AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1059950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1059950 MtrunA17_Chr7g0237221 67.961 206 9 3 1 149 1 206 1.68e-77 236
Msa1059950 MtrunA17_Chr4g0010101 44.776 134 51 5 26 149 80 200 5.86e-21 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1059950 AT3G24800.1 32.800 125 80 3 28 149 86 209 7.79e-11 59.3

Find 91 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCATTTGGTTATATAAAT+TGG 0.214799 7_2:+47366913 None:intergenic
CGGTAACAACGGTGAAAATA+TGG 0.244050 7_2:-47368559 Msa1059950:three_prime_UTR
ATTCTATGTGTGAATCATAA+TGG 0.273252 7_2:-47366953 Msa1059950:three_prime_UTR
TCTTTCAACATCCAGTCTTT+AGG 0.278763 7_2:-47367319 Msa1059950:three_prime_UTR
AGATTCAGTTGGAAACTTAT+TGG 0.282390 7_2:+47367127 None:intergenic
GTTCTCTGTGCATATTCTTC+AGG 0.323222 7_2:+47370196 None:intergenic
TAATTTCAGGTTCTCCTTCA+TGG 0.328542 7_2:+47370587 None:intergenic
TTCCTCCTCTACGATAAATC+TGG 0.336084 7_2:-47370665 Msa1059950:CDS
TGTGAATCACAAGCTAAATT+TGG 0.337553 7_2:-47370706 Msa1059950:CDS
CTATGAGAATCCTACTATTA+AGG 0.339041 7_2:+47367040 None:intergenic
ATTAAATCGACCGGGAAGTT+TGG 0.339988 7_2:+47367438 None:intergenic
TTCTATGTGTGAATCATAAT+GGG 0.341287 7_2:-47366952 Msa1059950:three_prime_UTR
ACCACTTGAGTTCAATCATT+TGG 0.346067 7_2:+47366900 None:intergenic
ATACAAGAGGAAGATGTCTT+AGG 0.351778 7_2:+47370139 None:intergenic
ACTCGAGTACCAGTAATTTC+AGG 0.355130 7_2:+47370574 None:intergenic
ACGCAACAACAAAAGGAATC+TGG 0.356154 7_2:+47373450 None:intergenic
TCATAATGGGATATACTCTA+TGG 0.368473 7_2:-47366939 Msa1059950:three_prime_UTR
AAAGTAGATCATGATTACTT+TGG 0.376500 7_2:+47367204 None:intergenic
TTATATCTATTTCCAATGAT+AGG 0.376913 7_2:+47367523 None:intergenic
AAGTAATCATGATCTACTTT+TGG 0.377167 7_2:-47367201 Msa1059950:three_prime_UTR
AGACATACCAAGGGTTTGAT+TGG 0.383910 7_2:+47372167 None:intergenic
AAGTAGATCATGATTACTTT+GGG 0.384261 7_2:+47367205 None:intergenic
GTCCTTCTATTGTAAGCAAC+AGG 0.387178 7_2:+47372189 None:intergenic
ATCCTGTTGCTTACAATAGA+AGG 0.392555 7_2:-47372191 Msa1059950:CDS
CTATGTTTGGCCTTAATAGT+AGG 0.399237 7_2:-47367050 Msa1059950:three_prime_UTR
CCAAAGTGAGCTTTCGAGTC+AGG 0.400318 7_2:+47368522 None:intergenic
CAGACTTTCGGAAATCCTCT+TGG 0.402123 7_2:+47370253 None:intergenic
TTAGAGGAAGAGAAGAAATC+AGG 0.403372 7_2:-47370760 Msa1059950:intron
AGGATTTCCGAAAGTCTGTT+TGG 0.403934 7_2:-47370248 Msa1059950:three_prime_UTR
GAAGGAGAACCTGAAATTAC+TGG 0.405207 7_2:-47370583 Msa1059950:CDS
GAAGCACTTGGGTTGTTTGA+TGG 0.422048 7_2:-47367277 Msa1059950:three_prime_UTR
GACAGTCGCTCCAAACTTCC+CGG 0.423547 7_2:-47367448 Msa1059950:three_prime_UTR
ATTCTATGTTTCCTAAAGAC+TGG 0.428866 7_2:+47367308 None:intergenic
GGCTGATCACTGGACAGTTA+AGG 0.432087 7_2:-47367348 Msa1059950:three_prime_UTR
ATGCAATGCGCAACTATGTT+TGG 0.437020 7_2:-47367063 Msa1059950:three_prime_UTR
TTCAGAAGTTCCGACATTGC+TGG 0.439795 7_2:+47370633 None:intergenic
TTCTTAGGTTTATTAGATAA+CGG 0.442432 7_2:-47368579 Msa1059950:intron
GCTGATCACTGGACAGTTAA+GGG 0.453416 7_2:-47367347 Msa1059950:three_prime_UTR
GAATTTACAGCTGAAGCACT+TGG 0.454031 7_2:-47367289 Msa1059950:three_prime_UTR
TGTCGGAACTTCTGAATGTA+TGG 0.457216 7_2:-47370626 Msa1059950:CDS
TCAAACTCCAAACAGACTTT+CGG 0.459929 7_2:+47370241 None:intergenic
CTTCATGTTCATCGTGATCA+AGG 0.464343 7_2:+47373481 None:intergenic
GTACAGGTATTACCTATCAT+TGG 0.466067 7_2:-47367535 Msa1059950:intron
CAGACAAACGCAACAACAAA+AGG 0.468211 7_2:+47373443 None:intergenic
AGTTCCGACATTGCTGGAGT+TGG 0.473470 7_2:+47370639 None:intergenic
AACAGATGCTATTGAACTAA+AGG 0.473532 7_2:-47370176 Msa1059950:three_prime_UTR
TTCGGAAATCCTCTTGGATG+TGG 0.478072 7_2:+47370259 None:intergenic
TCGAAAGCTCACTTTGGAGT+TGG 0.481647 7_2:-47368516 Msa1059950:three_prime_UTR
TTGTAGCATCAGGTTCATCT+TGG 0.481698 7_2:+47367242 None:intergenic
CGCAACAACAAAAGGAATCT+GGG 0.481878 7_2:+47373451 None:intergenic
AATTTCAGGTTCTCCTTCAT+GGG 0.482482 7_2:+47370588 None:intergenic
GTAGTTCTTCATTGCGGTCA+TGG 0.487400 7_2:-47370454 Msa1059950:CDS
CCTGACTCGAAAGCTCACTT+TGG 0.493932 7_2:-47368522 Msa1059950:three_prime_UTR
CTTAATAGTAGGATTCTCAT+AGG 0.498453 7_2:-47367039 Msa1059950:three_prime_UTR
ATTATGTTACGACGAGGGTC+AGG 0.504681 7_2:+47367376 None:intergenic
AATATACTTGAGAAAACGTC+AGG 0.506540 7_2:+47370341 None:intergenic
TTTATCGTAGAGGAGGAAGA+AGG 0.510014 7_2:+47370670 None:intergenic
ATGTTGTTGATTAAATCGAC+CGG 0.525287 7_2:+47367429 None:intergenic
CACATTGTACACATCACGTC+AGG 0.527410 7_2:+47370499 None:intergenic
AAGCTAGAGAAAGATTCAGT+TGG 0.540119 7_2:+47367116 None:intergenic
ATAATGTTGAGGCTGATCAC+TGG 0.541980 7_2:-47367358 Msa1059950:three_prime_UTR
ATGTGTCGAGATCAAATTGA+GGG 0.551782 7_2:+47370728 None:intergenic
AGAAGGACCAATCAAACCCT+TGG 0.556347 7_2:-47372174 Msa1059950:intron
CAACCTGGGTCTTCCCATGA+AGG 0.559563 7_2:-47370601 Msa1059950:CDS
ACCAAATGATTGAACTCAAG+TGG 0.560364 7_2:-47366901 Msa1059950:three_prime_UTR
TGACCGCAATGAAGAACTAC+AGG 0.562056 7_2:+47370457 None:intergenic
CTTCATGGGAAGACCCAGGT+TGG 0.564739 7_2:+47370602 None:intergenic
TTATCGTAGAGGAGGAAGAA+GGG 0.571648 7_2:+47370671 None:intergenic
GATTCCAACTCCAGCAATGT+CGG 0.586368 7_2:-47370643 Msa1059950:CDS
AATTTACAGCTGAAGCACTT+GGG 0.587037 7_2:-47367288 Msa1059950:three_prime_UTR
ATATAAATGCAATGACTGCA+AGG 0.592429 7_2:-47367506 Msa1059950:three_prime_UTR
CTGAATGTATGGACCAACCT+GGG 0.596406 7_2:-47370615 Msa1059950:CDS
GCACTTGGGTTGTTTGATGG+TGG 0.598437 7_2:-47367274 Msa1059950:three_prime_UTR
AAGACTGGATGTTGAAAGAA+CGG 0.601005 7_2:+47367323 None:intergenic
TCTGAATGTATGGACCAACC+TGG 0.603579 7_2:-47370616 Msa1059950:CDS
ATCCAGATTTATCGTAGAGG+AGG 0.605715 7_2:+47370663 None:intergenic
ACAACGGTGAAAATATGGAA+TGG 0.622237 7_2:-47368554 Msa1059950:three_prime_UTR
TGTTGTTGATTAAATCGACC+GGG 0.622865 7_2:+47367430 None:intergenic
CATCCTGTAGTTCTTCATTG+CGG 0.631699 7_2:-47370460 Msa1059950:CDS
TCTCCTTCATGGGAAGACCC+AGG 0.634624 7_2:+47370598 None:intergenic
GATGTGGAATTTGACAAACT+TGG 0.636520 7_2:+47370275 None:intergenic
CATGTGTCGAGATCAAATTG+AGG 0.638580 7_2:+47370727 None:intergenic
TGTCAAATTCCACATCCAAG+AGG 0.641776 7_2:-47370268 Msa1059950:three_prime_UTR
AAGCTTGAAACTGTGATCTG+AGG 0.649140 7_2:+47367405 None:intergenic
CTCAACATTATGTTACGACG+AGG 0.657315 7_2:+47367370 None:intergenic
GGAATCCAGATTTATCGTAG+AGG 0.677717 7_2:+47370660 None:intergenic
TTATTAGATAACGGTAACAA+CGG 0.687872 7_2:-47368570 Msa1059950:three_prime_UTR
TGTTGTGTAAGATTATCCTG+AGG 0.689095 7_2:+47370535 None:intergenic
TGTGTCGAGATCAAATTGAG+GGG 0.711213 7_2:+47370729 None:intergenic
TCAACATTATGTTACGACGA+GGG 0.714087 7_2:+47367371 None:intergenic
CTCGTCGTAACATAATGTTG+AGG 0.716659 7_2:-47367369 Msa1059950:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATAT+AGG + chr7_2:47368637-47368656 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr7_2:47368637-47368656 Msa1059950:intron 0.0%
!! TATATATATATATATATATA+GGG - chr7_2:47368636-47368655 Msa1059950:intron 0.0%
!! ATATATATATATATATATAT+GGG + chr7_2:47368637-47368656 None:intergenic 0.0%
!! TATATATATATATATATATA+TGG + chr7_2:47368636-47368655 None:intergenic 0.0%
!! TTTAATAAAAATAAAAATAA+AGG + chr7_2:47371447-47371466 None:intergenic 0.0%
!! TTTGAATAGTAAATAATAAT+TGG + chr7_2:47367074-47367093 None:intergenic 10.0%
!! ATTATTATTTACTATTCAAA+AGG - chr7_2:47367074-47367093 Msa1059950:three_prime_UTR 10.0%
!! TTATTATTTACTATTCAAAA+GGG - chr7_2:47367075-47367094 Msa1059950:three_prime_UTR 10.0%
!!! TCATCATTTTAAAAAAATAA+AGG + chr7_2:47367113-47367132 None:intergenic 10.0%
!!! ATTTTTATTCTAAAGTTAAA+AGG - chr7_2:47367802-47367821 Msa1059950:intron 10.0%
!! TTAAAATGAAATAGTATTAT+AGG + chr7_2:47370566-47370585 None:intergenic 10.0%
!!! GTTATTTTGAATAATTTTTA+TGG + chr7_2:47370589-47370608 None:intergenic 10.0%
!!! AATTTTTTCTCTTTTTATCA+AGG - chr7_2:47367035-47367054 Msa1059950:three_prime_UTR 15.0%
!! ATGAATTATTATAACTCTAA+TGG + chr7_2:47367339-47367358 None:intergenic 15.0%
!! AAAAAAAAAAAAACAGTATC+CGG + chr7_2:47367671-47367690 None:intergenic 15.0%
!! TATAATTTAATAAAGAAACG+AGG + chr7_2:47367886-47367905 None:intergenic 15.0%
!! AAATTAATAGTAACTATCTT+TGG + chr7_2:47368301-47368320 None:intergenic 15.0%
!!! GTTTTATTTCTAATGTTTTA+TGG - chr7_2:47369404-47369423 Msa1059950:intron 15.0%
!! AATAAATACAATTTACTAGA+AGG + chr7_2:47369536-47369555 None:intergenic 15.0%
!! TAATAAAATATACATACAAG+AGG + chr7_2:47370260-47370279 None:intergenic 15.0%
!!! TGCTTTTAGATTTTTTTATA+TGG - chr7_2:47370353-47370372 Msa1059950:three_prime_UTR 15.0%
!! ATAACAATAAGTAATAGATA+TGG + chr7_2:47370787-47370806 None:intergenic 15.0%
!!! AAATCATTTTTAGTGATTTA+TGG - chr7_2:47370910-47370929 Msa1059950:intron 15.0%
!!! AATCATTTTTAGTGATTTAT+GGG - chr7_2:47370911-47370930 Msa1059950:intron 15.0%
!!! TAATTATTTTCTTCTTTCTT+AGG - chr7_2:47371789-47371808 Msa1059950:intron 15.0%
!! TTAACAATATGTAGAATTAA+AGG + chr7_2:47372044-47372063 None:intergenic 15.0%
!!! ATTCTACATATTGTTAATTT+TGG - chr7_2:47372047-47372066 Msa1059950:intron 15.0%
!!! TATTAGTTTATAGATGTTAA+CGG - chr7_2:47372627-47372646 Msa1059950:intron 15.0%
!! AATCATTTGGTTATATAAAT+TGG + chr7_2:47373473-47373492 None:intergenic 15.0%
!! AAGAGAAAAAATTGAACATA+GGG + chr7_2:47367028-47367047 None:intergenic 20.0%
!! AAAGAGAAAAAATTGAACAT+AGG + chr7_2:47367029-47367048 None:intergenic 20.0%
!!! TTAGCTTTAGTTAATTTGAT+TGG - chr7_2:47367151-47367170 Msa1059950:three_prime_UTR 20.0%
!!! ATGGACTAATACATAAAAAT+TGG + chr7_2:47367604-47367623 None:intergenic 20.0%
!!! TAGAATAACTTGTATTAATG+AGG - chr7_2:47368357-47368376 Msa1059950:intron 20.0%
!!! GATTTTTTTATATGGTTTGT+TGG - chr7_2:47370361-47370380 Msa1059950:three_prime_UTR 20.0%
!!! ATCATTTTTAGTGATTTATG+GGG - chr7_2:47370912-47370931 Msa1059950:intron 20.0%
!! ACTAAACCATAGATTTAAAT+TGG + chr7_2:47371060-47371079 None:intergenic 20.0%
!!! CCATTTTAATGGTAATTATT+GGG + chr7_2:47371177-47371196 None:intergenic 20.0%
!!! ACCATTTTAATGGTAATTAT+TGG + chr7_2:47371178-47371197 None:intergenic 20.0%
!! AACTTATAATCCAGAATTTA+AGG + chr7_2:47371311-47371330 None:intergenic 20.0%
!!! TATACTAATTTTCTATCTCT+TGG - chr7_2:47371752-47371771 Msa1059950:intron 20.0%
!! TTCTTAGGTTTATTAGATAA+CGG - chr7_2:47371804-47371823 Msa1059950:intron 20.0%
!! TAAAAGCCATATTATGTATA+TGG - chr7_2:47372084-47372103 Msa1059950:intron 20.0%
!!! AAATTTCCTTTCTTCTTTTA+AGG - chr7_2:47372141-47372160 Msa1059950:intron 20.0%
!!! AATTTCCTTTCTTCTTTTAA+GGG - chr7_2:47372142-47372161 Msa1059950:intron 20.0%
!! TGAGAAAACTGAAAATAATA+AGG + chr7_2:47372180-47372199 None:intergenic 20.0%
!! AGCAACAAAGAAAAATAAAT+AGG + chr7_2:47372276-47372295 None:intergenic 20.0%
!! ATTATATCCTAAGTAAAGAA+TGG + chr7_2:47372441-47372460 None:intergenic 20.0%
!!! TTTATTTTTCTGAGTATCTT+TGG - chr7_2:47372760-47372779 Msa1059950:intron 20.0%
!! TTATATCTATTTCCAATGAT+AGG + chr7_2:47372863-47372882 None:intergenic 20.0%
! ATGTAACTAGAATTTAGAAG+AGG - chr7_2:47367286-47367305 Msa1059950:three_prime_UTR 25.0%
!!! ACTCGTTTGATATTTGTTTT+TGG - chr7_2:47367408-47367427 Msa1059950:three_prime_UTR 25.0%
!! TTGGTAATTCATAGTTAGTA+TGG - chr7_2:47367464-47367483 Msa1059950:three_prime_UTR 25.0%
! TGGTAATTCATAGTTAGTAT+GGG - chr7_2:47367465-47367484 Msa1059950:three_prime_UTR 25.0%
! GCATAAGTTCATTTGAATAT+AGG - chr7_2:47368255-47368274 Msa1059950:intron 25.0%
!! AGCTTTTATAAACATTACAC+AGG + chr7_2:47369249-47369268 None:intergenic 25.0%
! CTTATAATGTCTTGGAATTT+GGG + chr7_2:47369323-47369342 None:intergenic 25.0%
! TCTTATAATGTCTTGGAATT+TGG + chr7_2:47369324-47369343 None:intergenic 25.0%
! CAGTTAATCTTATAATGTCT+TGG + chr7_2:47369331-47369350 None:intergenic 25.0%
! AAAAAATCTAAAAGCAAAGC+TGG + chr7_2:47370349-47370368 None:intergenic 25.0%
! GAAAAGACATTAAGTGATTT+AGG - chr7_2:47370524-47370543 Msa1059950:CDS 25.0%
! ATTGTTCTAATAAAGACACT+TGG - chr7_2:47370631-47370650 Msa1059950:CDS 25.0%
! TTGTTCTAATAAAGACACTT+GGG - chr7_2:47370632-47370651 Msa1059950:CDS 25.0%
!! CTTTTGGATAAAATTGTTGT+GGG + chr7_2:47370660-47370679 None:intergenic 25.0%
!! CACAACAATTTTATCCAAAA+GGG - chr7_2:47370659-47370678 Msa1059950:CDS 25.0%
!! ACAACAATTTTATCCAAAAG+GGG - chr7_2:47370660-47370679 Msa1059950:CDS 25.0%
! CCTAAATAAATAGGAAAATC+AGG + chr7_2:47370819-47370838 None:intergenic 25.0%
!! CCTGATTTTCCTATTTATTT+AGG - chr7_2:47370816-47370835 Msa1059950:intron 25.0%
! AGACTCAATCCTAAATAAAT+AGG + chr7_2:47370828-47370847 None:intergenic 25.0%
!! ATACAATCATTTTCCTATGT+TGG - chr7_2:47370848-47370867 Msa1059950:intron 25.0%
!! TACAATCATTTTCCTATGTT+GGG - chr7_2:47370849-47370868 Msa1059950:intron 25.0%
! AGTTGTAAACTCTTAGAATT+TGG + chr7_2:47370882-47370901 None:intergenic 25.0%
! AACCATAGATTTAAATTGGA+TGG + chr7_2:47371056-47371075 None:intergenic 25.0%
! TTGTCTAAAAACAATCTAGA+GGG - chr7_2:47371093-47371112 Msa1059950:intron 25.0%
!! AAATATTGACTGTAATCGAA+AGG + chr7_2:47371121-47371140 None:intergenic 25.0%
! CCCAATAATTACCATTAAAA+TGG - chr7_2:47371174-47371193 Msa1059950:intron 25.0%
!! TTTCTACTGAACCATTTTAA+TGG + chr7_2:47371188-47371207 None:intergenic 25.0%
! ATTAAAATGGTTCAGTAGAA+AGG - chr7_2:47371187-47371206 Msa1059950:intron 25.0%
! AAATCTGTGTCAAAATTATC+CGG - chr7_2:47371464-47371483 Msa1059950:intron 25.0%
! AAATTGTCTCCTTATTGAAT+CGG + chr7_2:47371591-47371610 None:intergenic 25.0%
!! ACAATCTTCAGTGTATTTTA+GGG + chr7_2:47371657-47371676 None:intergenic 25.0%
!! TACAATCTTCAGTGTATTTT+AGG + chr7_2:47371658-47371677 None:intergenic 25.0%
! AAAACAGAGAATGTATACTA+GGG + chr7_2:47371704-47371723 None:intergenic 25.0%
! AAAAACAGAGAATGTATACT+AGG + chr7_2:47371705-47371724 None:intergenic 25.0%
!! TTATTAGATAACGGTAACAA+CGG - chr7_2:47371813-47371832 Msa1059950:intron 25.0%
! TTGGAACCATATACATAATA+TGG + chr7_2:47372093-47372112 None:intergenic 25.0%
!! GATCATATCGATTATCTTAT+TGG + chr7_2:47372112-47372131 None:intergenic 25.0%
!!! ATAGTTTTGTAAAGAAGACA+TGG - chr7_2:47372201-47372220 Msa1059950:intron 25.0%
!!! TAGTTTTGTAAAGAAGACAT+GGG - chr7_2:47372202-47372221 Msa1059950:intron 25.0%
! TTTATATAACTAAGTTGCAG+TGG - chr7_2:47372299-47372318 Msa1059950:intron 25.0%
! AGTAAAGAATGGAATTAGTT+TGG + chr7_2:47372430-47372449 None:intergenic 25.0%
! ACTAATTCCATTCTTTACTT+AGG - chr7_2:47372431-47372450 Msa1059950:intron 25.0%
!!! AAAATAGGTTTTGATCTTTG+TGG - chr7_2:47372902-47372921 Msa1059950:intron 25.0%
!! AATTTTCAATTTGTAGCATC+AGG + chr7_2:47373154-47373173 None:intergenic 25.0%
! AAGTAGATCATGATTACTTT+GGG + chr7_2:47373181-47373200 None:intergenic 25.0%
! AAAGTAGATCATGATTACTT+TGG + chr7_2:47373182-47373201 None:intergenic 25.0%
!! AAGTAATCATGATCTACTTT+TGG - chr7_2:47373182-47373201 Msa1059950:intron 25.0%
!! GATTTAAGAGATGCAATTTT+TGG - chr7_2:47373223-47373242 Msa1059950:intron 25.0%
! ATTCTATGTGTGAATCATAA+TGG - chr7_2:47373430-47373449 Msa1059950:intron 25.0%
! TTCTATGTGTGAATCATAAT+GGG - chr7_2:47373431-47373450 Msa1059950:intron 25.0%
! AAAGGCATAGAATTGAAAGA+TGG + chr7_2:47366979-47366998 None:intergenic 30.0%
TCATAAAAGGGGGAAAAAAA+AGG + chr7_2:47366997-47367016 None:intergenic 30.0%
! AGGGTGTGTTTTTCATAAAA+GGG + chr7_2:47367009-47367028 None:intergenic 30.0%
! TAGGGTGTGTTTTTCATAAA+AGG + chr7_2:47367010-47367029 None:intergenic 30.0%
TTGCATTATCTTCAGTGAAT+TGG + chr7_2:47367266-47367285 None:intergenic 30.0%
TAATTCATAGTTAGTATGGG+AGG - chr7_2:47367468-47367487 Msa1059950:three_prime_UTR 30.0%
TAAAGTTAAAAGGATGATGC+TGG - chr7_2:47367812-47367831 Msa1059950:intron 30.0%
!!! TTGGTCAATGTGTCATTTTA+AGG - chr7_2:47367846-47367865 Msa1059950:intron 30.0%
GTTGTCTTACATAGTACAAT+GGG + chr7_2:47367958-47367977 None:intergenic 30.0%
TGTGTACATAAATCAATGAG+TGG - chr7_2:47368077-47368096 Msa1059950:intron 30.0%
GTGTACATAAATCAATGAGT+GGG - chr7_2:47368078-47368097 Msa1059950:intron 30.0%
TGTACATAAATCAATGAGTG+GGG - chr7_2:47368079-47368098 Msa1059950:intron 30.0%
! GAAGCAAAAAATGAAGCATT+TGG + chr7_2:47368163-47368182 None:intergenic 30.0%
TAGAGAAATAGACATACCAA+GGG + chr7_2:47368228-47368247 None:intergenic 30.0%
TTAGAGAAATAGACATACCA+AGG + chr7_2:47368229-47368248 None:intergenic 30.0%
ATACTACGATAACATCATAC+CGG - chr7_2:47368416-47368435 Msa1059950:intron 30.0%
ACATCATACCGGTATATATA+TGG - chr7_2:47368427-47368446 Msa1059950:intron 30.0%
CATCATACCGGTATATATAT+GGG - chr7_2:47368428-47368447 Msa1059950:intron 30.0%
AGCAAAACCCATATATATAC+CGG + chr7_2:47368438-47368457 None:intergenic 30.0%
ACACCTTCATAAAAGTAAGT+TGG - chr7_2:47368541-47368560 Msa1059950:three_prime_UTR 30.0%
!! ACACCAACTTACTTTTATGA+AGG + chr7_2:47368784-47368803 None:intergenic 30.0%
ATAAAAGACACCTTCACAAA+AGG + chr7_2:47368735-47368754 None:intergenic 30.0%
!! ACACCAACTTACTTTTATGA+AGG - chr7_2:47368784-47368803 Msa1059950:intron 30.0%
ACACCTTCATAAAAGTAAGT+TGG + chr7_2:47368541-47368560 None:intergenic 30.0%
AAAGTGAAAATCACACCTTA+AGG - chr7_2:47368832-47368851 Msa1059950:intron 30.0%
! TTTTATCAAGTCACACCTTA+AGG + chr7_2:47368850-47368869 None:intergenic 30.0%
! CATTTTGCTTACACATATGA+AGG + chr7_2:47369010-47369029 None:intergenic 30.0%
ATTCTATTATGCTTTAGTCC+AGG + chr7_2:47369359-47369378 None:intergenic 30.0%
TGGACTAAAGCATAATAGAA+TGG - chr7_2:47369358-47369377 Msa1059950:intron 30.0%
CCAATAATCAGAATAAGACA+CGG + chr7_2:47369458-47369477 None:intergenic 30.0%
!!! TCATTGATCTCTTGTTTTAG+AGG - chr7_2:47369607-47369626 Msa1059950:intron 30.0%
TGTGAATCACAAGCTAAATT+TGG - chr7_2:47369677-47369696 Msa1059950:intron 30.0%
AATATACTTGAGAAAACGTC+AGG + chr7_2:47370045-47370064 None:intergenic 30.0%
!! TTTGGAGTTTGATCACTTTT+TGG - chr7_2:47370153-47370172 Msa1059950:three_prime_UTR 30.0%
AACAGATGCTATTGAACTAA+AGG - chr7_2:47370207-47370226 Msa1059950:three_prime_UTR 30.0%
GCATTTGCACTTAAGATAAA+TGG - chr7_2:47370417-47370436 Msa1059950:three_prime_UTR 30.0%
! CCTTTTGGATAAAATTGTTG+TGG + chr7_2:47370661-47370680 None:intergenic 30.0%
! CCACAACAATTTTATCCAAA+AGG - chr7_2:47370658-47370677 Msa1059950:CDS 30.0%
! CAACAATTTTATCCAAAAGG+GGG - chr7_2:47370661-47370680 Msa1059950:CDS 30.0%
AAAATTCTCTTAGCGTATCT+TGG - chr7_2:47370753-47370772 Msa1059950:CDS 30.0%
ACCACATCAAGAATGAATAA+AGG + chr7_2:47370943-47370962 None:intergenic 30.0%
! GGTATCAGATTTTGTATAAG+AGG + chr7_2:47371023-47371042 None:intergenic 30.0%
! AAATTGGATGGCAATTTTCA+AGG + chr7_2:47371044-47371063 None:intergenic 30.0%
TGCCATCCAATTTAAATCTA+TGG - chr7_2:47371051-47371070 Msa1059950:intron 30.0%
CTTGTCTAAAAACAATCTAG+AGG - chr7_2:47371092-47371111 Msa1059950:intron 30.0%
!! AATTTGAGAAGTGTTACAAC+TGG - chr7_2:47371263-47371282 Msa1059950:intron 30.0%
TTGTTTAGAGAATCCAGATA+AGG + chr7_2:47371408-47371427 None:intergenic 30.0%
TTATCTGGATTCTCTAAACA+AGG - chr7_2:47371407-47371426 Msa1059950:intron 30.0%
! TGTCAAAATTATCCGGTTTT+AGG - chr7_2:47371471-47371490 Msa1059950:intron 30.0%
ATCCTAATTCCGATTCAATA+AGG - chr7_2:47371579-47371598 Msa1059950:intron 30.0%
TAAGGAGACAATTTATGACA+TGG - chr7_2:47371597-47371616 Msa1059950:intron 30.0%
CACTTCAAACATATGATCTA+CGG - chr7_2:47371624-47371643 Msa1059950:intron 30.0%
TCATAAGCATGCATTTAACA+AGG + chr7_2:47372007-47372026 None:intergenic 30.0%
! GAATGGAATTAGTTTGGAAT+CGG + chr7_2:47372373-47372392 None:intergenic 30.0%
AGTGAAGAATGGAATTAGTT+TGG + chr7_2:47372379-47372398 None:intergenic 30.0%
TTTATATCCTGAGTGAAGAA+TGG + chr7_2:47372390-47372409 None:intergenic 30.0%
! GAATGGAATTAGTTTGGAAT+CGG + chr7_2:47372373-47372392 None:intergenic 30.0%
!! TTTTGGAAGACTGATATTTG+AGG + chr7_2:47372534-47372553 None:intergenic 30.0%
AGTTTCACATAACCAATCTA+GGG + chr7_2:47372580-47372599 None:intergenic 30.0%
ATATAAATGCAATGACTGCA+AGG - chr7_2:47372877-47372896 Msa1059950:intron 30.0%
AATGACTGCAAGGAAAAAAT+AGG - chr7_2:47372887-47372906 Msa1059950:intron 30.0%
! ATGTTGTTGATTAAATCGAC+CGG + chr7_2:47372957-47372976 None:intergenic 30.0%
ATTCTATGTTTCCTAAAGAC+TGG + chr7_2:47373078-47373097 None:intergenic 30.0%
AGATTCAGTTGGAAACTTAT+TGG + chr7_2:47373259-47373278 None:intergenic 30.0%
CTATGAGAATCCTACTATTA+AGG + chr7_2:47373346-47373365 None:intergenic 30.0%
CTTAATAGTAGGATTCTCAT+AGG - chr7_2:47373344-47373363 Msa1059950:intron 30.0%
! TCATAATGGGATATACTCTA+TGG - chr7_2:47373444-47373463 Msa1059950:intron 30.0%
! GGTGTGTTTTTCATAAAAGG+GGG + chr7_2:47367007-47367026 None:intergenic 35.0%
! GGGTGTGTTTTTCATAAAAG+GGG + chr7_2:47367008-47367027 None:intergenic 35.0%
!! TCTGAAGTTGATATGCATGT+AGG - chr7_2:47367201-47367220 Msa1059950:three_prime_UTR 35.0%
!! CTGAAGTTGATATGCATGTA+GGG - chr7_2:47367202-47367221 Msa1059950:three_prime_UTR 35.0%
GAAGAGGAAAAACTCATCAT+TGG - chr7_2:47367302-47367321 Msa1059950:three_prime_UTR 35.0%
AGGAAAAACTCATCATTGGT+TGG - chr7_2:47367306-47367325 Msa1059950:three_prime_UTR 35.0%
AACGAGTCACATTACATTCT+GGG + chr7_2:47367395-47367414 None:intergenic 35.0%
AAACGAGTCACATTACATTC+TGG + chr7_2:47367396-47367415 None:intergenic 35.0%
ATGGGAGGTAAATAATGTCT+AGG - chr7_2:47367483-47367502 Msa1059950:three_prime_UTR 35.0%
ACATAAAAATTGGCACCTGA+AGG + chr7_2:47367594-47367613 None:intergenic 35.0%
GTATTAGTCCATATAGAGCT+TGG - chr7_2:47367612-47367631 Msa1059950:intron 35.0%
AAAAAACAGTATCCGGTCAA+AGG + chr7_2:47367664-47367683 None:intergenic 35.0%
!! CTCACGAATGATTTGTCTTT+TGG - chr7_2:47367735-47367754 Msa1059950:intron 35.0%
!! TTGTCTTTTGGTAATCTTGC+TGG - chr7_2:47367747-47367766 Msa1059950:intron 35.0%
!!! TAAAAGGATGATGCTGGTTT+TGG - chr7_2:47367818-47367837 Msa1059950:intron 35.0%
TAACACTACTTTCATCATGC+AGG - chr7_2:47367917-47367936 Msa1059950:intron 35.0%
AACACTACTTTCATCATGCA+GGG - chr7_2:47367918-47367937 Msa1059950:intron 35.0%
CGTTGTCTTACATAGTACAA+TGG + chr7_2:47367959-47367978 None:intergenic 35.0%
AATCTAAGTGTCCAACTTGT+AGG - chr7_2:47368108-47368127 Msa1059950:intron 35.0%
!! TAGTATTGATGCCTACAAGT+TGG + chr7_2:47368122-47368141 None:intergenic 35.0%
! ATCCTGTTGCTTACAATAGA+AGG - chr7_2:47368192-47368211 Msa1059950:intron 35.0%
AAAGTGAAAATCACACCTTG+AGG + chr7_2:47368499-47368518 None:intergenic 35.0%
CTAAAAGACACCTTCACAAA+AGG - chr7_2:47368596-47368615 Msa1059950:intron 35.0%
! ATAGAAGACACCTTTTGTGA+AGG - chr7_2:47368722-47368741 Msa1059950:intron 35.0%
TTGATAAAAGACACCACCAA+AGG - chr7_2:47368861-47368880 Msa1059950:intron 35.0%
TGATAAAAGACACCACCAAA+GGG - chr7_2:47368862-47368881 Msa1059950:intron 35.0%
GATCATTCAAGTGCATAACT+AGG - chr7_2:47369033-47369052 Msa1059950:intron 35.0%
TTCCATATTGCCTAGAGATA+TGG - chr7_2:47369085-47369104 Msa1059950:intron 35.0%
TCAAACACCTTCATTCTGTT+CGG - chr7_2:47369181-47369200 Msa1059950:intron 35.0%
! AATGTCTTGGAATTTGGGTT+GGG + chr7_2:47369318-47369337 None:intergenic 35.0%
TAATGTCTTGGAATTTGGGT+TGG + chr7_2:47369319-47369338 None:intergenic 35.0%
! GATAATTTTCTGCAGCTTTG+TGG - chr7_2:47369380-47369399 Msa1059950:intron 35.0%
! CCGTGTCTTATTCTGATTAT+TGG - chr7_2:47369455-47369474 Msa1059950:intron 35.0%
TAGAAGGTGATGTTGAGAAA+GGG + chr7_2:47369520-47369539 None:intergenic 35.0%
TTAGAGGAAGAGAAGAAATC+AGG - chr7_2:47369623-47369642 Msa1059950:intron 35.0%
ATGTGTCGAGATCAAATTGA+GGG + chr7_2:47369658-47369677 None:intergenic 35.0%
!! AATTTCAGGTTCTCCTTCAT+GGG + chr7_2:47369798-47369817 None:intergenic 35.0%
!! TAATTTCAGGTTCTCCTTCA+TGG + chr7_2:47369799-47369818 None:intergenic 35.0%
TGTTGTGTAAGATTATCCTG+AGG + chr7_2:47369851-47369870 None:intergenic 35.0%
GATGTGGAATTTGACAAACT+TGG + chr7_2:47370111-47370130 None:intergenic 35.0%
TCAAACTCCAAACAGACTTT+CGG + chr7_2:47370145-47370164 None:intergenic 35.0%
ATACAAGAGGAAGATGTCTT+AGG + chr7_2:47370247-47370266 None:intergenic 35.0%
TTCAGTTACAACTATCTCGT+AGG + chr7_2:47370507-47370526 None:intergenic 35.0%
TTAAGTGATTTAGGTGTGAG+TGG - chr7_2:47370533-47370552 Msa1059950:CDS 35.0%
! AGAGAATTTTCTCCATAGCT+GGG + chr7_2:47370743-47370762 None:intergenic 35.0%
! AAGAGAATTTTCTCCATAGC+TGG + chr7_2:47370744-47370763 None:intergenic 35.0%
! TTTTAGTGATTTATGGGGAC+TGG - chr7_2:47370917-47370936 Msa1059950:intron 35.0%
GCCTTTATTCATTCTTGATG+TGG - chr7_2:47370939-47370958 Msa1059950:intron 35.0%
!! ATCACTATTTCTAACCTGTG+TGG - chr7_2:47370964-47370983 Msa1059950:intron 35.0%
ATGCTCATTCCAAATGCATT+TGG - chr7_2:47370991-47371010 Msa1059950:intron 35.0%
AGGAATGATCCAAATGCATT+TGG + chr7_2:47371003-47371022 None:intergenic 35.0%
!!! GTCAATATTTTAGCAAGCTC+TGG - chr7_2:47371131-47371150 Msa1059950:intron 35.0%
ACTTCTCAAATTCTCAGCAT+CGG + chr7_2:47371255-47371274 None:intergenic 35.0%
TAAGGAACAGCTTCGAATAA+CGG + chr7_2:47371293-47371312 None:intergenic 35.0%
! CGAGTGTTATCATTTTCTTG+AGG - chr7_2:47371349-47371368 Msa1059950:intron 35.0%
TCCTCATCTTTACCTAAAAC+CGG + chr7_2:47371486-47371505 None:intergenic 35.0%
CTCCTTATTGAATCGGAATT+AGG + chr7_2:47371584-47371603 None:intergenic 35.0%
CGTAGATCATATGTTTGAAG+TGG + chr7_2:47371626-47371645 None:intergenic 35.0%
ACAACGGTGAAAATATGGAA+TGG - chr7_2:47371829-47371848 Msa1059950:intron 35.0%
CTCTCATATACTGCTATAGT+AGG - chr7_2:47371920-47371939 Msa1059950:intron 35.0%
ATGCTCCCTTAAAAGAAGAA+AGG + chr7_2:47372150-47372169 None:intergenic 35.0%
! TAGTTTGGAATCGGTCTTTA+TGG + chr7_2:47372364-47372383 None:intergenic 35.0%
ACTAATTCCATTCTTCACTC+AGG - chr7_2:47372380-47372399 Msa1059950:intron 35.0%
! TAGTTTGGAATCGGTCTTTA+TGG + chr7_2:47372364-47372383 None:intergenic 35.0%
! ATGTCAGCTGAGTAGTTTTT+AGG + chr7_2:47372473-47372492 None:intergenic 35.0%
TCTTCCAAAACATTAACCAC+TGG - chr7_2:47372544-47372563 Msa1059950:intron 35.0%
CAGTTTCACATAACCAATCT+AGG + chr7_2:47372581-47372600 None:intergenic 35.0%
! AAATGCAGTGTGATAATGTG+TGG - chr7_2:47372818-47372837 Msa1059950:intron 35.0%
GTACAGGTATTACCTATCAT+TGG - chr7_2:47372848-47372867 Msa1059950:intron 35.0%
! TGTTGTTGATTAAATCGACC+GGG + chr7_2:47372956-47372975 None:intergenic 35.0%
TCAACATTATGTTACGACGA+GGG + chr7_2:47373015-47373034 None:intergenic 35.0%
AAGACTGGATGTTGAAAGAA+CGG + chr7_2:47373063-47373082 None:intergenic 35.0%
TCTTTCAACATCCAGTCTTT+AGG - chr7_2:47373064-47373083 Msa1059950:intron 35.0%
! AATTTACAGCTGAAGCACTT+GGG - chr7_2:47373095-47373114 Msa1059950:intron 35.0%
AAGCTAGAGAAAGATTCAGT+TGG + chr7_2:47373270-47373289 None:intergenic 35.0%
!! CTATGTTTGGCCTTAATAGT+AGG - chr7_2:47373333-47373352 Msa1059950:intron 35.0%
ACCAAATGATTGAACTCAAG+TGG - chr7_2:47373482-47373501 Msa1059950:CDS 35.0%
ACCACTTGAGTTCAATCATT+TGG + chr7_2:47373486-47373505 None:intergenic 35.0%
CTTCATGTTCATCGTGATCA+AGG + chr7_2:47366905-47366924 None:intergenic 40.0%
CGCAACAACAAAAGGAATCT+GGG + chr7_2:47366935-47366954 None:intergenic 40.0%
ACGCAACAACAAAAGGAATC+TGG + chr7_2:47366936-47366955 None:intergenic 40.0%
CAGACAAACGCAACAACAAA+AGG + chr7_2:47366943-47366962 None:intergenic 40.0%
ACGAGTCACATTACATTCTG+GGG + chr7_2:47367394-47367413 None:intergenic 40.0%
AAATTGGCACCTGAAGGATT+CGG + chr7_2:47367588-47367607 None:intergenic 40.0%
TTAGTCCATATAGAGCTTGG+TGG - chr7_2:47367615-47367634 Msa1059950:intron 40.0%
TAGTCCATATAGAGCTTGGT+GGG - chr7_2:47367616-47367635 Msa1059950:intron 40.0%
TGATCAAGAATTGTTCACCC+AGG - chr7_2:47367697-47367716 Msa1059950:intron 40.0%
TTCACCCAGGAATCGAATTT+GGG - chr7_2:47367710-47367729 Msa1059950:intron 40.0%
! GGTAATCTTGCTGGTTGATA+TGG - chr7_2:47367756-47367775 Msa1059950:intron 40.0%
TGAACGTGTTAGTAGTGTGA+TGG - chr7_2:47367998-47368017 Msa1059950:intron 40.0%
ATGACCACAAGCTGCAAAAA+TGG + chr7_2:47368042-47368061 None:intergenic 40.0%
GTCCTTCTATTGTAAGCAAC+AGG + chr7_2:47368197-47368216 None:intergenic 40.0%
AGACATACCAAGGGTTTGAT+TGG + chr7_2:47368219-47368238 None:intergenic 40.0%
TGCTAAAAGACACCACCAAA+GGG + chr7_2:47368469-47368488 None:intergenic 40.0%
TTGCTAAAAGACACCACCAA+AGG + chr7_2:47368470-47368489 None:intergenic 40.0%
! TTTTAGCAAGTCACACCTCA+AGG - chr7_2:47368481-47368500 Msa1059950:intron 40.0%
! CTACAAGACACCTTTTGTGA+AGG + chr7_2:47368609-47368628 None:intergenic 40.0%
! TTTTGTTACAAGCCACCCTT+TGG + chr7_2:47368880-47368899 None:intergenic 40.0%
CTTAGAGTCTCTTTCCAGTT+AGG + chr7_2:47368982-47369001 None:intergenic 40.0%
CTAACTGGAAAGAGACTCTA+AGG - chr7_2:47368980-47368999 Msa1059950:intron 40.0%
AGGCCTTCATATGTGTGAAA+TGG - chr7_2:47369053-47369072 Msa1059950:intron 40.0%
CCACCATTTCACACATATGA+AGG + chr7_2:47369059-47369078 None:intergenic 40.0%
CCTTCATATGTGTGAAATGG+TGG - chr7_2:47369056-47369075 Msa1059950:intron 40.0%
TCAACAAAGGCCATATCTCT+AGG + chr7_2:47369098-47369117 None:intergenic 40.0%
! GAAGGCGGAATTTTCAACAA+AGG + chr7_2:47369111-47369130 None:intergenic 40.0%
TGAAAATTCCGCCTTCATTG+TGG - chr7_2:47369115-47369134 Msa1059950:intron 40.0%
!! GAACAGAATGAAGGTGTTTG+AGG + chr7_2:47369182-47369201 None:intergenic 40.0%
!! TTCATTCTGTTCGGTGTGAA+GGG - chr7_2:47369190-47369209 Msa1059950:intron 40.0%
ATTACACAGGCCATATCTCT+AGG + chr7_2:47369236-47369255 None:intergenic 40.0%
CTAACTCAACCTTGCAAAAC+CGG + chr7_2:47369294-47369313 None:intergenic 40.0%
ATAAGATTAACTGCGTCTCC+TGG - chr7_2:47369338-47369357 Msa1059950:intron 40.0%
TGTTTCATGCATACTGCTTG+AGG - chr7_2:47369478-47369497 Msa1059950:intron 40.0%
GTTTCATGCATACTGCTTGA+GGG - chr7_2:47369479-47369498 Msa1059950:intron 40.0%
CTAGAAGGTGATGTTGAGAA+AGG + chr7_2:47369521-47369540 None:intergenic 40.0%
TGTGTCGAGATCAAATTGAG+GGG + chr7_2:47369657-47369676 None:intergenic 40.0%
CATGTGTCGAGATCAAATTG+AGG + chr7_2:47369659-47369678 None:intergenic 40.0%
TTATCGTAGAGGAGGAAGAA+GGG + chr7_2:47369715-47369734 None:intergenic 40.0%
TTTATCGTAGAGGAGGAAGA+AGG + chr7_2:47369716-47369735 None:intergenic 40.0%
TTCCTCCTCTACGATAAATC+TGG - chr7_2:47369718-47369737 Msa1059950:intron 40.0%
ATCCAGATTTATCGTAGAGG+AGG + chr7_2:47369723-47369742 None:intergenic 40.0%
GGAATCCAGATTTATCGTAG+AGG + chr7_2:47369726-47369745 None:intergenic 40.0%
TGTCGGAACTTCTGAATGTA+TGG - chr7_2:47369757-47369776 Msa1059950:intron 40.0%
GAAGGAGAACCTGAAATTAC+TGG - chr7_2:47369800-47369819 Msa1059950:intron 40.0%
ACTCGAGTACCAGTAATTTC+AGG + chr7_2:47369812-47369831 None:intergenic 40.0%
!! TGAAGAAAAAGCATTGCCTC+AGG - chr7_2:47369832-47369851 Msa1059950:intron 40.0%
CATCCTGTAGTTCTTCATTG+CGG - chr7_2:47369923-47369942 Msa1059950:intron 40.0%
TGTCAAATTCCACATCCAAG+AGG - chr7_2:47370115-47370134 Msa1059950:intron 40.0%
AGGATTTCCGAAAGTCTGTT+TGG - chr7_2:47370135-47370154 Msa1059950:intron 40.0%
!!! GGAGTTTGATCACTTTTTGG+AGG - chr7_2:47370156-47370175 Msa1059950:three_prime_UTR 40.0%
GTTCTCTGTGCATATTCTTC+AGG + chr7_2:47370190-47370209 None:intergenic 40.0%
CTTAAGTGCAAATGCTAGCA+AGG + chr7_2:47370412-47370431 None:intergenic 40.0%
ATCCTTGTGGAACAGTTTCA+GGG + chr7_2:47370477-47370496 None:intergenic 40.0%
AATCCTTGTGGAACAGTTTC+AGG + chr7_2:47370478-47370497 None:intergenic 40.0%
! ATAACACTATCTCCCCCTTT+TGG + chr7_2:47370676-47370695 None:intergenic 40.0%
!! CTATTTCTAACCTGTGTGGA+TGG - chr7_2:47370968-47370987 Msa1059950:intron 40.0%
AAGGAACAGCTTCGAATAAC+GGG + chr7_2:47371292-47371311 None:intergenic 40.0%
CGAAGCTGTTCCTTAAATTC+TGG - chr7_2:47371298-47371317 Msa1059950:intron 40.0%
AGAATCCAGATAAGGAGACT+AGG + chr7_2:47371400-47371419 None:intergenic 40.0%
!!! TCCGGTTTTAGGTAAAGATG+AGG - chr7_2:47371482-47371501 Msa1059950:intron 40.0%
CGGTAACAACGGTGAAAATA+TGG - chr7_2:47371824-47371843 Msa1059950:intron 40.0%
!! GAGTTGGTTGTGACTTTTGT+GGG - chr7_2:47371883-47371902 Msa1059950:intron 40.0%
! AGTTGGTTGTGACTTTTGTG+GGG - chr7_2:47371884-47371903 Msa1059950:intron 40.0%
TACCTGTCTAGTATGAAGCA+GGG + chr7_2:47371959-47371978 None:intergenic 40.0%
AGCATGCATTTAACAAGGAC+AGG + chr7_2:47372002-47372021 None:intergenic 40.0%
!! TCTACTATGACTCGGTTGAA+AGG - chr7_2:47372323-47372342 Msa1059950:intron 40.0%
! TGTGCCAGTGGTTAATGTTT+TGG + chr7_2:47372551-47372570 None:intergenic 40.0%
! AATGTGTGGCTTGTATGTAC+AGG - chr7_2:47372832-47372851 Msa1059950:intron 40.0%
ATTAAATCGACCGGGAAGTT+TGG + chr7_2:47372948-47372967 None:intergenic 40.0%
AAGCTTGAAACTGTGATCTG+AGG + chr7_2:47372981-47373000 None:intergenic 40.0%
CTCAACATTATGTTACGACG+AGG + chr7_2:47373016-47373035 None:intergenic 40.0%
CTCGTCGTAACATAATGTTG+AGG - chr7_2:47373014-47373033 Msa1059950:intron 40.0%
ATAATGTTGAGGCTGATCAC+TGG - chr7_2:47373025-47373044 Msa1059950:intron 40.0%
! GAATTTACAGCTGAAGCACT+TGG - chr7_2:47373094-47373113 Msa1059950:intron 40.0%
TTGTAGCATCAGGTTCATCT+TGG + chr7_2:47373144-47373163 None:intergenic 40.0%
ATGCAATGCGCAACTATGTT+TGG - chr7_2:47373320-47373339 Msa1059950:intron 40.0%
TCTAGGCTAGAAACCCACAT+GGG - chr7_2:47367500-47367519 Msa1059950:three_prime_UTR 45.0%
CAATCCCACCAAGCTCTATA+TGG + chr7_2:47367623-47367642 None:intergenic 45.0%
! CATATAGAGCTTGGTGGGAT+TGG - chr7_2:47367621-47367640 Msa1059950:intron 45.0%
GGTCAAAGGACCAACTAATC+CGG + chr7_2:47367650-47367669 None:intergenic 45.0%
!! GGATTAGTTGGTCCTTTGAC+CGG - chr7_2:47367649-47367668 Msa1059950:intron 45.0%
GTTCACCCAGGAATCGAATT+TGG - chr7_2:47367709-47367728 Msa1059950:intron 45.0%
AGAGCCCAAATTCGATTCCT+GGG + chr7_2:47367717-47367736 None:intergenic 45.0%
!!! GATGCTGGTTTTGGACATGT+TGG - chr7_2:47367827-47367846 Msa1059950:intron 45.0%
!! TCCTCCATTTTTGCAGCTTG+TGG - chr7_2:47368035-47368054 Msa1059950:intron 45.0%
ACCACAAGCTGCAAAAATGG+AGG + chr7_2:47368039-47368058 None:intergenic 45.0%
!! GTGGTCATATGTGCTGTTTC+TGG - chr7_2:47368054-47368073 Msa1059950:intron 45.0%
! GAAGCATTTGGCAGACTGTT+GGG + chr7_2:47368151-47368170 None:intergenic 45.0%
! TGAAGCATTTGGCAGACTGT+TGG + chr7_2:47368152-47368171 None:intergenic 45.0%
AGAAGGACCAATCAAACCCT+TGG - chr7_2:47368209-47368228 Msa1059950:intron 45.0%
! TTTTGCTACAAGCCACCCTT+TGG - chr7_2:47368451-47368470 Msa1059950:intron 45.0%
TAAAAGACACCACCAAAGGG+TGG + chr7_2:47368865-47368884 None:intergenic 45.0%
TAAAAGACACCACCAAAGGG+TGG - chr7_2:47368865-47368884 Msa1059950:intron 45.0%
CAAGCAAGAGATGTCCTAAC+TGG - chr7_2:47368965-47368984 Msa1059950:intron 45.0%
GGCCATATCTCTAGGCAATA+TGG + chr7_2:47369090-47369109 None:intergenic 45.0%
AACCCAGATGTCGCAATTAG+GGG + chr7_2:47369146-47369165 None:intergenic 45.0%
CAACCCAGATGTCGCAATTA+GGG + chr7_2:47369147-47369166 None:intergenic 45.0%
CTTCACACCGAACAGAATGA+AGG + chr7_2:47369191-47369210 None:intergenic 45.0%
!! CTTCATTCTGTTCGGTGTGA+AGG - chr7_2:47369189-47369208 Msa1059950:intron 45.0%
!! TCATTCTGTTCGGTGTGAAG+GGG - chr7_2:47369191-47369210 Msa1059950:intron 45.0%
TCCCACATTGCCTAGAGATA+TGG - chr7_2:47369223-47369242 Msa1059950:intron 45.0%
GCCATATCTCTAGGCAATGT+GGG + chr7_2:47369227-47369246 None:intergenic 45.0%
!! AAAACCGGCTTGTAAGGTGA+AGG + chr7_2:47369279-47369298 None:intergenic 45.0%
! CGGTTTTGCAAGGTTGAGTT+AGG - chr7_2:47369292-47369311 Msa1059950:intron 45.0%
AAGGTGATGTTGAGAAAGGG+AGG + chr7_2:47369517-47369536 None:intergenic 45.0%
GATTCCAACTCCAGCAATGT+CGG - chr7_2:47369740-47369759 Msa1059950:intron 45.0%
TTCAGAAGTTCCGACATTGC+TGG + chr7_2:47369753-47369772 None:intergenic 45.0%
TCTGAATGTATGGACCAACC+TGG - chr7_2:47369767-47369786 Msa1059950:intron 45.0%
CTGAATGTATGGACCAACCT+GGG - chr7_2:47369768-47369787 Msa1059950:intron 45.0%
CACATTGTACACATCACGTC+AGG + chr7_2:47369887-47369906 None:intergenic 45.0%
TGACCGCAATGAAGAACTAC+AGG + chr7_2:47369929-47369948 None:intergenic 45.0%
GTAGTTCTTCATTGCGGTCA+TGG - chr7_2:47369929-47369948 Msa1059950:intron 45.0%
TTCGGAAATCCTCTTGGATG+TGG + chr7_2:47370127-47370146 None:intergenic 45.0%
CAGACTTTCGGAAATCCTCT+TGG + chr7_2:47370133-47370152 None:intergenic 45.0%
TCAGGGCAATATCGTTCTGT+AGG + chr7_2:47370460-47370479 None:intergenic 45.0%
! CGTAGGAGTTCTAATCCTTG+TGG + chr7_2:47370490-47370509 None:intergenic 45.0%
!! AGCATCGGCTATAAGAGAGT+AGG + chr7_2:47371240-47371259 None:intergenic 45.0%
CAGATAAGGAGACTAGGACA+CGG + chr7_2:47371394-47371413 None:intergenic 45.0%
!! TCGAAAGCTCACTTTGGAGT+TGG - chr7_2:47371867-47371886 Msa1059950:intron 45.0%
!! GGAGTTGGTTGTGACTTTTG+TGG - chr7_2:47371882-47371901 Msa1059950:intron 45.0%
ACCTGTCTAGTATGAAGCAG+GGG + chr7_2:47371958-47371977 None:intergenic 45.0%
CTACCTGTCTAGTATGAAGC+AGG + chr7_2:47371960-47371979 None:intergenic 45.0%
! CAGGTAGTCATCGTTTTACG+CGG - chr7_2:47371973-47371992 Msa1059950:intron 45.0%
ATTATGTTACGACGAGGGTC+AGG + chr7_2:47373010-47373029 None:intergenic 45.0%
GCTGATCACTGGACAGTTAA+GGG - chr7_2:47373036-47373055 Msa1059950:intron 45.0%
! GAAGCACTTGGGTTGTTTGA+TGG - chr7_2:47373106-47373125 Msa1059950:intron 45.0%
!!! AAATTATTTTATCTATTTAT+TGG - chr7_2:47369563-47369582 Msa1059950:intron 5.0%
!!! AATTATTTTATCTATTTATT+GGG - chr7_2:47369564-47369583 Msa1059950:intron 5.0%
!! TAAATATAAAAAGAATTTAA+AGG + chr7_2:47372744-47372763 None:intergenic 5.0%
TTCCTAGGGGAAAGAGGCTT+TGG - chr7_2:47367445-47367464 Msa1059950:three_prime_UTR 50.0%
TACCAAAGCCTCTTTCCCCT+AGG + chr7_2:47367450-47367469 None:intergenic 50.0%
GTCTAGGCTAGAAACCCACA+TGG - chr7_2:47367499-47367518 Msa1059950:three_prime_UTR 50.0%
! CTTGAGAGGAGCACACTCTA+AGG + chr7_2:47367551-47367570 None:intergenic 50.0%
CTTAGAGTGTGCTCCTCTCA+AGG - chr7_2:47367549-47367568 Msa1059950:intron 50.0%
ACTTGAGCTGAGACCTTGAG+AGG + chr7_2:47367565-47367584 None:intergenic 50.0%
AGCTCAAGTCCGAATCCTTC+AGG - chr7_2:47367576-47367595 Msa1059950:intron 50.0%
!! GGATTGGTCTCCGGATTAGT+TGG - chr7_2:47367637-47367656 Msa1059950:intron 50.0%
GAGAGCCCAAATTCGATTCC+TGG + chr7_2:47367718-47367737 None:intergenic 50.0%
TGTTACAAGCCACCCTTTGG+TGG + chr7_2:47368877-47368896 None:intergenic 50.0%
ACCCAGATGTCGCAATTAGG+GGG + chr7_2:47369145-47369164 None:intergenic 50.0%
GCAACCCAGATGTCGCAATT+AGG + chr7_2:47369148-47369167 None:intergenic 50.0%
! GGTGTTTGAGGCTGCAACAA+AGG + chr7_2:47369170-47369189 None:intergenic 50.0%
GGCCATATCTCTAGGCAATG+TGG + chr7_2:47369228-47369247 None:intergenic 50.0%
!! CCTTGCAAAACCGGCTTGTA+AGG + chr7_2:47369285-47369304 None:intergenic 50.0%
!! CCTTACAAGCCGGTTTTGCA+AGG - chr7_2:47369282-47369301 Msa1059950:intron 50.0%
AGTTCCGACATTGCTGGAGT+TGG + chr7_2:47369747-47369766 None:intergenic 50.0%
TGCCCTGAAACTGTTCCACA+AGG - chr7_2:47370472-47370491 Msa1059950:CDS 50.0%
AAGAGTCAAGCTCCCAGCTA+TGG - chr7_2:47370728-47370747 Msa1059950:CDS 50.0%
GAATGAGCATCCATCCACAC+AGG + chr7_2:47370981-47371000 None:intergenic 50.0%
CGTGTCCTAGTCTCCTTATC+TGG - chr7_2:47371392-47371411 Msa1059950:intron 50.0%
! CCAAAGTGAGCTTTCGAGTC+AGG + chr7_2:47371864-47371883 None:intergenic 50.0%
! CCTGACTCGAAAGCTCACTT+TGG - chr7_2:47371861-47371880 Msa1059950:intron 50.0%
TCCCCTGCTTCATACTAGAC+AGG - chr7_2:47371954-47371973 Msa1059950:intron 50.0%
! GCAGTGGCTCTACTATGACT+CGG - chr7_2:47372315-47372334 Msa1059950:intron 50.0%
GGCACACACATTCCCTAGAT+TGG - chr7_2:47372565-47372584 Msa1059950:intron 50.0%
GGCTGATCACTGGACAGTTA+AGG - chr7_2:47373035-47373054 Msa1059950:intron 50.0%
! GCACTTGGGTTGTTTGATGG+TGG - chr7_2:47373109-47373128 Msa1059950:intron 50.0%
TGCTAACCCTCGCGTTCCTA+GGG - chr7_2:47367431-47367450 Msa1059950:three_prime_UTR 55.0%
TCTTTCCCCTAGGAACGCGA+GGG + chr7_2:47367440-47367459 None:intergenic 55.0%
GGCTAGAAACCCACATGGGT+TGG - chr7_2:47367504-47367523 Msa1059950:three_prime_UTR 55.0%
ACAACGAGGCCAACCCATGT+GGG + chr7_2:47367516-47367535 None:intergenic 55.0%
!! ATGGGTTGGCCTCGTTGTGT+AGG - chr7_2:47367518-47367537 Msa1059950:three_prime_UTR 55.0%
GGTCTCAAGCCTACACAACG+AGG + chr7_2:47367530-47367549 None:intergenic 55.0%
!! AGCTTGGTGGGATTGGTCTC+CGG - chr7_2:47367628-47367647 Msa1059950:intron 55.0%
TGCTACAAGCCACCCTTTGG+TGG - chr7_2:47368454-47368473 Msa1059950:intron 55.0%
AGATGTCGCAATTAGGGGGC+GGG + chr7_2:47369141-47369160 None:intergenic 55.0%
CAGATGTCGCAATTAGGGGG+CGG + chr7_2:47369142-47369161 None:intergenic 55.0%
GCCCCCTAATTGCGACATCT+GGG - chr7_2:47369141-47369160 Msa1059950:intron 55.0%
GCAGCCTTCACCTTACAAGC+CGG - chr7_2:47369272-47369291 Msa1059950:intron 55.0%
CTTCATGGGAAGACCCAGGT+TGG + chr7_2:47369784-47369803 None:intergenic 55.0%
CAACCTGGGTCTTCCCATGA+AGG - chr7_2:47369782-47369801 Msa1059950:intron 55.0%
TCTCCTTCATGGGAAGACCC+AGG + chr7_2:47369788-47369807 None:intergenic 55.0%
CTAGGGAATGTGTGTGCCAG+TGG + chr7_2:47372563-47372582 None:intergenic 55.0%
GACAGTCGCTCCAAACTTCC+CGG - chr7_2:47372935-47372954 Msa1059950:intron 55.0%
GTGCTAACCCTCGCGTTCCT+AGG - chr7_2:47367430-47367449 Msa1059950:three_prime_UTR 60.0%
GCTAACCCTCGCGTTCCTAG+GGG - chr7_2:47367432-47367451 Msa1059950:three_prime_UTR 60.0%
CTCTTTCCCCTAGGAACGCG+AGG + chr7_2:47367441-47367460 None:intergenic 60.0%
CTCGCGTTCCTAGGGGAAAG+AGG - chr7_2:47367439-47367458 Msa1059950:three_prime_UTR 60.0%
CACAACGAGGCCAACCCATG+TGG + chr7_2:47367517-47367536 None:intergenic 60.0%
CGCCCCCTAATTGCGACATC+TGG - chr7_2:47369140-47369159 Msa1059950:intron 60.0%
TAGGGGGCGGGCCACAATGA+AGG + chr7_2:47369129-47369148 None:intergenic 65.0%
GGGGCGGGCCACAATGAAGG+CGG + chr7_2:47369126-47369145 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 47366879 47373526 47366879 ID=Msa1059950;Name=Msa1059950
chr7_2 mRNA 47366879 47373526 47366879 ID=Msa1059950-mRNA-1;Parent=Msa1059950;Name=Msa1059950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.6|0.5|1|1|0.83|6|1063|154
chr7_2 exon 47366879 47367551 47366879 ID=Msa1059950-mRNA-1:exon:8523;Parent=Msa1059950-mRNA-1
chr7_2 exon 47368500 47368594 47368500 ID=Msa1059950-mRNA-1:exon:8522;Parent=Msa1059950-mRNA-1
chr7_2 exon 47370143 47370778 47370143 ID=Msa1059950-mRNA-1:exon:8521;Parent=Msa1059950-mRNA-1
chr7_2 exon 47372175 47372217 47372175 ID=Msa1059950-mRNA-1:exon:8520;Parent=Msa1059950-mRNA-1
chr7_2 exon 47372349 47372354 47372349 ID=Msa1059950-mRNA-1:exon:8519;Parent=Msa1059950-mRNA-1
chr7_2 exon 47373452 47373526 47373452 ID=Msa1059950-mRNA-1:exon:8518;Parent=Msa1059950-mRNA-1
chr7_2 CDS 47373452 47373526 47373452 ID=Msa1059950-mRNA-1:cds;Parent=Msa1059950-mRNA-1
chr7_2 CDS 47372349 47372354 47372349 ID=Msa1059950-mRNA-1:cds;Parent=Msa1059950-mRNA-1
chr7_2 CDS 47372175 47372217 47372175 ID=Msa1059950-mRNA-1:cds;Parent=Msa1059950-mRNA-1
chr7_2 CDS 47370438 47370778 47370438 ID=Msa1059950-mRNA-1:cds;Parent=Msa1059950-mRNA-1
chr7_2 three_prime_UTR 47370143 47370437 47370143 ID=Msa1059950-mRNA-1:three_prime_utr;Parent=Msa1059950-mRNA-1
chr7_2 three_prime_UTR 47368500 47368594 47368500 ID=Msa1059950-mRNA-1:three_prime_utr;Parent=Msa1059950-mRNA-1
chr7_2 three_prime_UTR 47366879 47367551 47366879 ID=Msa1059950-mRNA-1:three_prime_utr;Parent=Msa1059950-mRNA-1
Gene Sequence

>Msa1059950

ATGGAGAACACAACATTGAAAGACCTTGATCACGATGAACATGAAGAACAAATCCCAGATTCCTTTTGTTGTTGCCTTGTGCTCTATCCTGTTGCTTACAATAGAAGGACCAATCAAACCCTTGAGGAAGAGAAGAAATCAGGCTACTACTCCCCTCAATTTGATCTCGACACATGTGAATCACAAGCTAAATTTGGTCATTCATGTAGCCCTTCTTCCTCCTCTACGATAAATCTGGATTCCAACTCCAGCAATGTCGGAACTTCTGAATGTATGGACCAACCTGGGTCTTCCCATGAAGGAGAACCTGAAATTACTGGTACTCGAGTTGAAGAAAAAGCATTGCCTCAGGATAATCTTACACAACAGAAAATATCAGTTCCTGACGTGATGTGTACAATGTGCAAGCAACTGCTTTTTCATCCTGTAGTTCTTCATTGCGGTCATGGTATTCGATGCATTTAA
Protein sequence

>Msa1059950

MENTTLKDLDHDEHEEQIPDSFCCCLVLYPVAYNRRTNQTLEEEKKSGYYSPQFDLDTCESQAKFGHSCSPSSSSTINLDSNSSNVGTSECMDQPGSSHEGEPEITGTRVEEKALPQDNLTQQKISVPDVMCTMCKQLLFHPVVLHCGHGIRCI*