Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431860 | XP_013448091.1 | 86.255 | 502 | 29 | 2 | 1 | 463 | 1 | 501 | 0.0 | 853 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431860 | sp|Q6NQK2|NAC8_ARATH | 37.313 | 469 | 244 | 13 | 2 | 453 | 3 | 438 | 3.30e-81 | 261 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431860 | A0A072TZ22 | 86.255 | 502 | 29 | 2 | 1 | 463 | 1 | 501 | 0.0 | 853 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1431860 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1014110 | Msa1431860 | 0.980054 | 2.431800e-149 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431860 | MtrunA17_Chr7g0227071 | 86.255 | 502 | 29 | 2 | 1 | 463 | 1 | 501 | 0.0 | 853 |
| Msa1431860 | MtrunA17_Chr5g0422431 | 38.351 | 485 | 212 | 14 | 5 | 456 | 6 | 436 | 2.86e-92 | 286 |
| Msa1431860 | MtrunA17_Chr1g0198751 | 51.362 | 257 | 118 | 3 | 5 | 256 | 8 | 262 | 4.90e-88 | 277 |
| Msa1431860 | MtrunA17_Chr2g0282871 | 56.216 | 185 | 74 | 3 | 35 | 215 | 31 | 212 | 4.80e-67 | 217 |
| Msa1431860 | MtrunA17_Chr4g0046431 | 55.978 | 184 | 74 | 3 | 36 | 215 | 47 | 227 | 1.69e-64 | 211 |
| Msa1431860 | MtrunA17_Chr8g0367761 | 56.667 | 180 | 71 | 3 | 36 | 211 | 47 | 223 | 5.07e-63 | 205 |
| Msa1431860 | MtrunA17_Chr4g0040541 | 54.054 | 185 | 82 | 1 | 34 | 215 | 24 | 208 | 6.39e-63 | 205 |
| Msa1431860 | MtrunA17_Chr8g0389661 | 53.646 | 192 | 80 | 4 | 30 | 215 | 25 | 213 | 8.95e-61 | 206 |
| Msa1431860 | MtrunA17_Chr2g0324961 | 50.246 | 203 | 97 | 2 | 34 | 233 | 25 | 226 | 1.60e-56 | 189 |
| Msa1431860 | MtrunA17_Chr1g0198741 | 48.227 | 141 | 68 | 2 | 113 | 249 | 10 | 149 | 1.42e-35 | 133 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1431860 | AT3G01600.1 | 55.856 | 222 | 97 | 1 | 1 | 222 | 1 | 221 | 6.72e-85 | 265 |
| Msa1431860 | AT5G14490.4 | 46.897 | 290 | 146 | 3 | 1 | 285 | 1 | 287 | 1.35e-83 | 261 |
| Msa1431860 | AT5G14490.3 | 46.552 | 290 | 147 | 3 | 1 | 285 | 4 | 290 | 6.84e-83 | 260 |
| Msa1431860 | AT5G14490.2 | 51.867 | 241 | 113 | 2 | 1 | 241 | 1 | 238 | 7.05e-83 | 257 |
| Msa1431860 | AT5G14490.1 | 46.552 | 290 | 147 | 3 | 1 | 285 | 4 | 290 | 8.84e-83 | 259 |
| Msa1431860 | AT1G25580.1 | 37.313 | 469 | 244 | 13 | 2 | 453 | 3 | 438 | 3.35e-82 | 261 |
| Msa1431860 | AT4G29230.3 | 52.332 | 193 | 82 | 3 | 30 | 215 | 26 | 215 | 1.08e-62 | 210 |
| Msa1431860 | AT4G29230.1 | 52.332 | 193 | 82 | 3 | 30 | 215 | 26 | 215 | 3.18e-62 | 210 |
| Msa1431860 | AT4G29230.2 | 52.332 | 193 | 81 | 3 | 30 | 215 | 26 | 214 | 3.60e-62 | 210 |
| Msa1431860 | AT1G28470.1 | 49.515 | 206 | 91 | 4 | 36 | 233 | 53 | 253 | 3.31e-61 | 202 |
| Msa1431860 | AT4G28500.1 | 48.718 | 195 | 98 | 1 | 34 | 226 | 36 | 230 | 4.39e-61 | 202 |
| Msa1431860 | AT5G56620.2 | 49.495 | 198 | 84 | 6 | 30 | 215 | 20 | 213 | 1.69e-56 | 192 |
| Msa1431860 | AT5G56620.3 | 49.495 | 198 | 84 | 6 | 30 | 215 | 20 | 213 | 1.81e-56 | 193 |
| Msa1431860 | AT5G56620.1 | 49.495 | 198 | 84 | 6 | 30 | 215 | 20 | 213 | 3.80e-56 | 191 |
Find 118 sgRNAs with CRISPR-Local
Find 294 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCGGTGGATTTGGAGGATT+TGG | 0.165293 | tig0026915:-34283 | None:intergenic |
| CGTTTCTTTGATTTCAATAA+TGG | 0.247959 | tig0026915:+31184 | Msa1431860:exon |
| TTTCCTGTACGCGGTGGATT+TGG | 0.270486 | tig0026915:-34292 | None:intergenic |
| TGCCCCGCAATTTGATATTC+AGG | 0.273298 | tig0026915:+34930 | Msa1431860:CDS |
| TCCTTCTGATGTGGAAATAT+TGG | 0.291101 | tig0026915:+32672 | Msa1431860:CDS |
| TGCCATGCAATCTGATATTC+AGG | 0.303911 | tig0026915:+34858 | Msa1431860:CDS |
| AAATCTCGTCACACAATAAT+AGG | 0.320076 | tig0026915:-35170 | None:intergenic |
| TCCATGTTCTATTATAGCTT+TGG | 0.323257 | tig0026915:-34023 | None:intergenic |
| GATTCTGAATATCAGTTTGC+AGG | 0.324041 | tig0026915:-35068 | None:intergenic |
| ATTCAAAACAAAAGTCTATA+TGG | 0.333060 | tig0026915:-35699 | None:intergenic |
| GGATTTGGGTTTGGAGTCCT+TGG | 0.334390 | tig0026915:-34268 | None:intergenic |
| CCAGTCAGATTTGTAGGACT+TGG | 0.338941 | tig0026915:-34101 | None:intergenic |
| GGAATTGGTGAATAGATCTT+TGG | 0.341596 | tig0026915:+35736 | Msa1431860:three_prime_UTR |
| ACACATCCTGAAAATCTTCC+AGG | 0.345121 | tig0026915:+32793 | Msa1431860:CDS |
| AAAACGCTTCTGGTACAAAA+AGG | 0.355639 | tig0026915:-35526 | None:intergenic |
| CACATACAACTTTGCATGGT+TGG | 0.357647 | tig0026915:+34891 | Msa1431860:CDS |
| AGAACTGAACAAAACGCTTC+TGG | 0.370919 | tig0026915:-35536 | None:intergenic |
| TTCATGCAGAATTTGACATT+TGG | 0.373477 | tig0026915:+35440 | Msa1431860:intron |
| GTTTGATAGGTGGGCTATGA+GGG | 0.374223 | tig0026915:+35486 | Msa1431860:CDS |
| ATAGAATCAAATACACCATT+TGG | 0.377118 | tig0026915:-35768 | None:intergenic |
| TCCTCCAGAGTATGATCTTT+CGG | 0.378493 | tig0026915:+35332 | Msa1431860:CDS |
| GCAAACTGATATTCAGAATC+AGG | 0.380819 | tig0026915:+35071 | Msa1431860:CDS |
| ACAATGAATGCATATAGTTC+TGG | 0.388883 | tig0026915:+33926 | Msa1431860:CDS |
| AATAGAACATGGAGAACATA+AGG | 0.393301 | tig0026915:+34033 | Msa1431860:CDS |
| TGCATGGCATTTGATTCTAC+AGG | 0.393871 | tig0026915:-34844 | None:intergenic |
| TTTATAGGTGCTAAGAAAGA+TGG | 0.402571 | tig0026915:+33878 | Msa1431860:intron |
| ATCACAGGCTATGGAAAATT+CGG | 0.402981 | tig0026915:+35128 | Msa1431860:CDS |
| GATCTTGAATATCAGATTGC+AGG | 0.404223 | tig0026915:-35005 | None:intergenic |
| GATCCTGAATATCAAATTGC+GGG | 0.404686 | tig0026915:-34933 | None:intergenic |
| GGATTTGGAGGATTTGGGTT+TGG | 0.408606 | tig0026915:-34277 | None:intergenic |
| CCTTGTTCTCCTTCCAATGT+TGG | 0.412278 | tig0026915:-32760 | None:intergenic |
| CAGTCTTGTGCCAGCGTACA+TGG | 0.417800 | tig0026915:-33994 | None:intergenic |
| GCAATTTGATATTCAGGATC+AGG | 0.422075 | tig0026915:+34936 | Msa1431860:CDS |
| GGTTTGATAGGTGGGCTATG+AGG | 0.422768 | tig0026915:+35485 | Msa1431860:CDS |
| TCTATTTACTGATTCTCAAT+TGG | 0.425400 | tig0026915:+35206 | Msa1431860:CDS |
| TGAAACTTCAACTGCTGTCC+TGG | 0.427456 | tig0026915:+35290 | Msa1431860:CDS |
| AACAACTCTGCATGGTTGGC+TGG | 0.431062 | tig0026915:+35102 | Msa1431860:CDS |
| TCTATACGACAATGACAGTT+TGG | 0.435157 | tig0026915:-32284 | None:intergenic |
| TTCAACTCTGCATGGTTGGC+TGG | 0.436796 | tig0026915:+34967 | Msa1431860:CDS |
| GTTCGCAATGTTATACTGTC+AGG | 0.437129 | tig0026915:-34241 | None:intergenic |
| GCGGTGGATTTGGAGGATTT+GGG | 0.438699 | tig0026915:-34282 | None:intergenic |
| CACATTCAACTCTGCATGGT+TGG | 0.439730 | tig0026915:+34963 | Msa1431860:CDS |
| AAAATGCATCAGTACCATCT+AGG | 0.444254 | tig0026915:+34124 | Msa1431860:CDS |
| CAGGGCAGCTTGCGATTCAC+CGG | 0.446866 | tig0026915:-35049 | None:intergenic |
| GACAGTATCCTTGGTTTGAT+AGG | 0.449913 | tig0026915:+35473 | Msa1431860:CDS |
| AACCACGATGATGAATCTTT+CGG | 0.450635 | tig0026915:-33961 | None:intergenic |
| GCAATCTGATATTCAGGATC+AGG | 0.451964 | tig0026915:+34864 | Msa1431860:CDS |
| CCTGTACGCGGTGGATTTGG+AGG | 0.456268 | tig0026915:-34289 | None:intergenic |
| CACAAACAACTCTGCATGGT+TGG | 0.457938 | tig0026915:+35098 | Msa1431860:CDS |
| TGTCCTGGATACACTGGAAT+TGG | 0.458293 | tig0026915:+35305 | Msa1431860:CDS |
| TAGCGGCTAAATGCGGTGTT+GGG | 0.459673 | tig0026915:+32701 | Msa1431860:CDS |
| TACAACTTTGCATGGTTGGC+TGG | 0.462824 | tig0026915:+34895 | Msa1431860:CDS |
| CGTCTTCATCAGTCCCTAGA+TGG | 0.465866 | tig0026915:-34138 | None:intergenic |
| GACAACTCTGCATGGTTGGC+CGG | 0.472780 | tig0026915:+35030 | Msa1431860:CDS |
| TTGTTACACACCTCTGCAAA+TGG | 0.484050 | tig0026915:-34355 | None:intergenic |
| TAAGGGATTTAAGAAGATCA+TGG | 0.488299 | tig0026915:+34051 | Msa1431860:CDS |
| CTCTTCAGCTGATCAGATCA+AGG | 0.488697 | tig0026915:+32238 | Msa1431860:CDS |
| AGAGCGAGTTGAGTGTTGTT+CGG | 0.490322 | tig0026915:-31128 | None:intergenic |
| GGCTGGTGAATCACAGGCTA+TGG | 0.490693 | tig0026915:+35119 | Msa1431860:CDS |
| CATGTACGCTGGCACAAGAC+TGG | 0.493768 | tig0026915:+33995 | Msa1431860:CDS |
| CTTTGATTTCAATAATGGCT+AGG | 0.494505 | tig0026915:+31189 | Msa1431860:exon |
| CGAGGAGTTCATACCAACAT+TGG | 0.496522 | tig0026915:+32747 | Msa1431860:CDS |
| AGTATCCTTGGTTTGATAGG+TGG | 0.497056 | tig0026915:+35476 | Msa1431860:CDS |
| TCTCAAGACGACAGTATCCT+TGG | 0.497503 | tig0026915:+35464 | Msa1431860:CDS |
| ATGGTTGGCTGGTGAATCAC+AGG | 0.504683 | tig0026915:+34978 | Msa1431860:CDS |
| CCAAGTCCTACAAATCTGAC+TGG | 0.505991 | tig0026915:+34101 | Msa1431860:CDS |
| CCTCCAAATCCACCGCGTAC+AGG | 0.506008 | tig0026915:+34289 | Msa1431860:CDS |
| GGAAATATTGGAGCATTTAG+CGG | 0.509677 | tig0026915:+32684 | Msa1431860:CDS |
| ATAGAACATGGAGAACATAA+GGG | 0.517209 | tig0026915:+34034 | Msa1431860:CDS |
| TAGGTTTCTAGTGAGTGGCC+TGG | 0.519691 | tig0026915:+32625 | Msa1431860:intron |
| CTTTGGTACTGAAATCCAAA+TGG | 0.521041 | tig0026915:+35753 | Msa1431860:three_prime_UTR |
| GTATCCTTGGTTTGATAGGT+GGG | 0.521729 | tig0026915:+35477 | Msa1431860:CDS |
| AAAATTTGATCCTTCTGATG+TGG | 0.522815 | tig0026915:+32663 | Msa1431860:CDS |
| TTTATGCCGAGGGGAAAGCC+AGG | 0.525377 | tig0026915:-32643 | None:intergenic |
| AAAACACATACAACTTTGCA+TGG | 0.525483 | tig0026915:+34887 | Msa1431860:CDS |
| TATCCAATTCCAGTGTATCC+AGG | 0.527108 | tig0026915:-35308 | None:intergenic |
| ACTGATGAAGACGAGAAGAA+TGG | 0.528383 | tig0026915:+34148 | Msa1431860:CDS |
| CACTACGAAAACAAAATGAC+AGG | 0.538985 | tig0026915:+35249 | Msa1431860:CDS |
| AATGACAGTTTGGACATTCA+CGG | 0.539158 | tig0026915:-32274 | None:intergenic |
| CAATAATAGGTCATCCAAGC+CGG | 0.539478 | tig0026915:-35157 | None:intergenic |
| ATGGTTGGCTGGTGAATCAC+AGG | 0.540111 | tig0026915:+35113 | Msa1431860:CDS |
| GAGTGGCCTGGCTTTCCCCT+CGG | 0.541252 | tig0026915:+32637 | Msa1431860:CDS |
| TCCAATATTTCCACATCAGA+AGG | 0.541653 | tig0026915:-32673 | None:intergenic |
| TTATAGGTGCTAAGAAAGAT+GGG | 0.542670 | tig0026915:+33879 | Msa1431860:intron |
| AAATTCGGAATATGCCGGCT+TGG | 0.543783 | tig0026915:+35143 | Msa1431860:CDS |
| ATGGTTGGCTGGTGAATCAC+AGG | 0.543839 | tig0026915:+34906 | Msa1431860:CDS |
| GAATGGCTAATTAACATAAG+AGG | 0.545620 | tig0026915:+32185 | Msa1431860:CDS |
| TCACGACAACTCTGCATGGT+TGG | 0.547089 | tig0026915:+35026 | Msa1431860:CDS |
| TTTGATAGGTGGGCTATGAG+GGG | 0.553023 | tig0026915:+35487 | Msa1431860:exon |
| TTCACTGTTGCCATTTGCAG+AGG | 0.555067 | tig0026915:+34345 | Msa1431860:CDS |
| AACTGCTGTCCTGGATACAC+TGG | 0.556255 | tig0026915:+35299 | Msa1431860:CDS |
| AAATGCATCAGTACCATCTA+GGG | 0.560385 | tig0026915:+34125 | Msa1431860:CDS |
| CCAACATTGGAAGGAGAACA+AGG | 0.565627 | tig0026915:+32760 | Msa1431860:CDS |
| ATCCTGAATATCAGATTGCA+TGG | 0.571869 | tig0026915:-34860 | None:intergenic |
| ATCTTGAATATCAGATTGCA+GGG | 0.579882 | tig0026915:-35004 | None:intergenic |
| ATGGAAAATTCGGAATATGC+CGG | 0.581608 | tig0026915:+35138 | Msa1431860:CDS |
| ATTCTGAATATCAGTTTGCA+GGG | 0.585363 | tig0026915:-35067 | None:intergenic |
| CTGTGTAGGTTTCTAGTGAG+TGG | 0.586670 | tig0026915:+32620 | Msa1431860:intron |
| AGATCTATTCACCAATTCCA+CGG | 0.598780 | tig0026915:-35732 | None:intergenic |
| GAGTTCATACCAACATTGGA+AGG | 0.612629 | tig0026915:+32751 | Msa1431860:CDS |
| CTTACCGAAAGATCATACTC+TGG | 0.616790 | tig0026915:-35336 | None:intergenic |
| GCTGATCAGATCAAGGATTG+TGG | 0.624068 | tig0026915:+32245 | Msa1431860:CDS |
| ACCAAAGCTATAATAGAACA+TGG | 0.626362 | tig0026915:+34022 | Msa1431860:CDS |
| TAACATTGCGAACAAGTCCA+AGG | 0.631835 | tig0026915:+34251 | Msa1431860:CDS |
| ACAACACATTCAACTCTGCA+TGG | 0.632912 | tig0026915:+34959 | Msa1431860:CDS |
| GCATGGCATTTGATTCTACA+GGG | 0.633182 | tig0026915:-34843 | None:intergenic |
| ATAACACAAACAACTCTGCA+TGG | 0.636499 | tig0026915:+35094 | Msa1431860:CDS |
| TGATCCTGAATATCAAATTG+CGG | 0.639621 | tig0026915:-34934 | None:intergenic |
| AAGATCACGACAACTCTGCA+TGG | 0.641984 | tig0026915:+35022 | Msa1431860:CDS |
| ACCGAAAGATCATACTCTGG+AGG | 0.654254 | tig0026915:-35333 | None:intergenic |
| ACAGGAAAATGTGTTGACAA+TGG | 0.656459 | tig0026915:+34307 | Msa1431860:CDS |
| AACTCCTCGATAAACATGTG+AGG | 0.657869 | tig0026915:-32733 | None:intergenic |
| CAACTGAAGACCATGTACGC+TGG | 0.659374 | tig0026915:+33984 | Msa1431860:CDS |
| GAGCATTTAGCGGCTAAATG+CGG | 0.674801 | tig0026915:+32694 | Msa1431860:CDS |
| CGCCGAAAGATTCATCATCG+TGG | 0.681320 | tig0026915:+33959 | Msa1431860:CDS |
| ATCCTGAATATCAAATTGCG+GGG | 0.687588 | tig0026915:-34932 | None:intergenic |
| AAAGCCTCACATGTTTATCG+AGG | 0.708264 | tig0026915:+32729 | Msa1431860:CDS |
| ATAGCCCACCTATCAAACCA+AGG | 0.709079 | tig0026915:-35481 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTGACTTTT+TGG | + | tig0026915:31521-31540 | Msa1431860:intron | 10.0% |
| !!! | TTTTTTTTTTTTGACTTTTT+GGG | + | tig0026915:31522-31541 | Msa1431860:intron | 10.0% |
| !!! | TTGTTTATTAATTTTTTTAC+TGG | + | tig0026915:34492-34511 | Msa1431860:intron | 10.0% |
| !! | AAATATAAAAAATGAAGTAT+GGG | - | tig0026915:35385-35404 | None:intergenic | 10.0% |
| !! | AAAATATAAAAAATGAAGTA+TGG | - | tig0026915:35386-35405 | None:intergenic | 10.0% |
| !!! | AAAGTTATTTTTCTTTTATT+TGG | + | tig0026915:35585-35604 | Msa1431860:three_prime_UTR | 10.0% |
| !! | TTTATACACAACAAAAAAAT+GGG | - | tig0026915:31282-31301 | None:intergenic | 15.0% |
| !!! | TTTTATACACAACAAAAAAA+TGG | - | tig0026915:31283-31302 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTATCTTTTGAG+TGG | + | tig0026915:31307-31326 | Msa1431860:intron | 15.0% |
| !! | AAATAAAGGAATTTACAATT+TGG | + | tig0026915:31619-31638 | Msa1431860:intron | 15.0% |
| !! | AATAAAGGAATTTACAATTT+GGG | + | tig0026915:31620-31639 | Msa1431860:intron | 15.0% |
| !! | ATTATAAGAGTAATAAACAT+AGG | - | tig0026915:33513-33532 | None:intergenic | 15.0% |
| !!! | TATTATCTGTTTTGTTTTAT+AGG | + | tig0026915:33863-33882 | Msa1431860:intron | 15.0% |
| !!! | AACTTTAAATTTTATGAACT+AGG | + | tig0026915:34807-34826 | Msa1431860:intron | 15.0% |
| !! | CAAAATATCATTCCATATAT+AGG | - | tig0026915:31594-31613 | None:intergenic | 20.0% |
| !!! | ATATATGGAATGATATTTTG+TGG | + | tig0026915:31594-31613 | Msa1431860:intron | 20.0% |
| !!! | TATATGGAATGATATTTTGT+GGG | + | tig0026915:31595-31614 | Msa1431860:intron | 20.0% |
| !! | ATAAAGGAATTTACAATTTG+GGG | + | tig0026915:31621-31640 | Msa1431860:intron | 20.0% |
| !!! | ACTTAGTATAGATTTTATGT+TGG | + | tig0026915:31968-31987 | Msa1431860:intron | 20.0% |
| !!! | TGTTTTTATGTAGTACAAAT+TGG | - | tig0026915:32833-32852 | None:intergenic | 20.0% |
| !!! | GGTAATAGTATTGTTTTAAA+CGG | + | tig0026915:32968-32987 | Msa1431860:intron | 20.0% |
| !! | TCTAATCATTAAGAAGAATT+TGG | + | tig0026915:33064-33083 | Msa1431860:intron | 20.0% |
| !! | AAAAATCTTGAAAGTGATAA+GGG | + | tig0026915:33206-33225 | Msa1431860:intron | 20.0% |
| !! | CCTTAACTTATAAAATATGA+TGG | - | tig0026915:33369-33388 | None:intergenic | 20.0% |
| !!! | CCATCATATTTTATAAGTTA+AGG | + | tig0026915:33366-33385 | Msa1431860:intron | 20.0% |
| !! | TGTTTATTACTCTTATAATG+TGG | + | tig0026915:33514-33533 | Msa1431860:intron | 20.0% |
| !!! | AGTAAAAACAGTGTTATTTT+TGG | - | tig0026915:34462-34481 | None:intergenic | 20.0% |
| !! | TGTAATTAAAATTTGAAGAC+AGG | + | tig0026915:34570-34589 | Msa1431860:intron | 20.0% |
| !! | ATTCAAAACAAAAGTCTATA+TGG | - | tig0026915:35702-35721 | None:intergenic | 20.0% |
| !! | CGTTTCTTTGATTTCAATAA+TGG | + | tig0026915:31184-31203 | Msa1431860:exon | 25.0% |
| !!! | TTTTATCTTTTGAGTGGTTT+TGG | + | tig0026915:31313-31332 | Msa1431860:intron | 25.0% |
| !!! | TATTTTTTTCCTCCTTTGTT+AGG | + | tig0026915:31376-31395 | Msa1431860:intron | 25.0% |
| !!! | ATTTTTTTCCTCCTTTGTTA+GGG | + | tig0026915:31377-31396 | Msa1431860:intron | 25.0% |
| !!! | ATGATGTGAATGGATTATTT+TGG | + | tig0026915:31562-31581 | Msa1431860:intron | 25.0% |
| !!! | TTTTGGCTTTTTCCTATATA+TGG | + | tig0026915:31579-31598 | Msa1431860:intron | 25.0% |
| !! | GATATTTTGTGGGTAAATAA+AGG | + | tig0026915:31605-31624 | Msa1431860:intron | 25.0% |
| ! | TAAAGGAATTTACAATTTGG+GGG | + | tig0026915:31622-31641 | Msa1431860:intron | 25.0% |
| ! | CAAAATATACCATTCATATG+TGG | - | tig0026915:31774-31793 | None:intergenic | 25.0% |
| ! | ATTCTTGAAAAAGTTTAGCA+TGG | + | tig0026915:32547-32566 | Msa1431860:intron | 25.0% |
| ! | TTCTTGAAAAAGTTTAGCAT+GGG | + | tig0026915:32548-32567 | Msa1431860:intron | 25.0% |
| ! | TAGCATTAGTGTAGAAAATA+TGG | + | tig0026915:32947-32966 | Msa1431860:intron | 25.0% |
| ! | GTAAGACATTATCTATTGTT+TGG | + | tig0026915:33127-33146 | Msa1431860:intron | 25.0% |
| ! | AATAACAGTGTTCTATCATT+AGG | - | tig0026915:33171-33190 | None:intergenic | 25.0% |
| ! | CAAAAATCTTGAAAGTGATA+AGG | + | tig0026915:33205-33224 | Msa1431860:intron | 25.0% |
| ! | CAGTTAACATTAGACTAATA+TGG | - | tig0026915:33273-33292 | None:intergenic | 25.0% |
| ! | AAATGAACTGAATCTTGATT+AGG | - | tig0026915:33481-33500 | None:intergenic | 25.0% |
| !! | ACACAATGAACTAGATTTTT+GGG | - | tig0026915:33559-33578 | None:intergenic | 25.0% |
| !! | AACACAATGAACTAGATTTT+TGG | - | tig0026915:33560-33579 | None:intergenic | 25.0% |
| !! | AAAATCTAGTTCATTGTGTT+AGG | + | tig0026915:33560-33579 | Msa1431860:intron | 25.0% |
| !! | AAATCTAGTTCATTGTGTTA+GGG | + | tig0026915:33561-33580 | Msa1431860:intron | 25.0% |
| ! | TGAATGCATATAGTAAACAA+GGG | + | tig0026915:33763-33782 | Msa1431860:intron | 25.0% |
| ! | GAAAAATGAAGATAAAGCAA+TGG | + | tig0026915:34210-34229 | Msa1431860:CDS | 25.0% |
| !!! | ATTTTTGGAAAAGAAACTGA+AGG | - | tig0026915:34447-34466 | None:intergenic | 25.0% |
| ! | TAAAATTTGAAGACAGGAAT+TGG | + | tig0026915:34576-34595 | Msa1431860:intron | 25.0% |
| !!! | AACTACTTTTATCTTCTATG+AGG | - | tig0026915:34645-34664 | None:intergenic | 25.0% |
| !!! | TCTATTTACTGATTCTCAAT+TGG | + | tig0026915:35206-35225 | Msa1431860:CDS | 25.0% |
| !!! | TAGTTACATGCAGTTTTTTT+TGG | + | tig0026915:35641-35660 | Msa1431860:three_prime_UTR | 25.0% |
| !!! | GCAGTTTTTTTTGGTTAAAT+TGG | + | tig0026915:35650-35669 | Msa1431860:three_prime_UTR | 25.0% |
| !!! | TTTTTTGGTTAAATTGGCTT+TGG | + | tig0026915:35656-35675 | Msa1431860:three_prime_UTR | 25.0% |
| ! | ATAGAATCAAATACACCATT+TGG | - | tig0026915:35771-35790 | None:intergenic | 25.0% |
| ! | CTTTGATTTCAATAATGGCT+AGG | + | tig0026915:31189-31208 | Msa1431860:exon | 30.0% |
| AATTGAACTATCCAGTTTCT+CGG | + | tig0026915:31436-31455 | Msa1431860:intron | 30.0% | |
| ATTTACAATTTGGGGGTTTA+TGG | + | tig0026915:31629-31648 | Msa1431860:intron | 30.0% | |
| TTTACAATTTGGGGGTTTAT+GGG | + | tig0026915:31630-31649 | Msa1431860:intron | 30.0% | |
| TCATCATCAATTGCAGAAAA+TGG | + | tig0026915:31720-31739 | Msa1431860:intron | 30.0% | |
| AATATACCATTCATATGTGG+TGG | - | tig0026915:31771-31790 | None:intergenic | 30.0% | |
| ! | ATATTTTGTGATCGCGATAT+AGG | + | tig0026915:31786-31805 | Msa1431860:intron | 30.0% |
| ! | AAAATTTGGCCCTTGTATTT+TGG | + | tig0026915:31924-31943 | Msa1431860:intron | 30.0% |
| AGAAAACCACCAAAATACAA+GGG | - | tig0026915:31936-31955 | None:intergenic | 30.0% | |
| TAGAAAACCACCAAAATACA+AGG | - | tig0026915:31937-31956 | None:intergenic | 30.0% | |
| !! | TATTTGTTGATTTATCCTGC+AGG | + | tig0026915:32162-32181 | Msa1431860:intron | 30.0% |
| !! | ATTTGTTGATTTATCCTGCA+GGG | + | tig0026915:32163-32182 | Msa1431860:intron | 30.0% |
| GAATGGCTAATTAACATAAG+AGG | + | tig0026915:32185-32204 | Msa1431860:CDS | 30.0% | |
| !! | GCTTCAAATTTTCTTGTTTC+TGG | - | tig0026915:32389-32408 | None:intergenic | 30.0% |
| AAAATGCAGGGTATAGTAAT+TGG | - | tig0026915:32461-32480 | None:intergenic | 30.0% | |
| TCCAACAAAAGAAAAATGCA+GGG | - | tig0026915:32473-32492 | None:intergenic | 30.0% | |
| TTCCAACAAAAGAAAAATGC+AGG | - | tig0026915:32474-32493 | None:intergenic | 30.0% | |
| ! | TCAAGTTTTTAATGTGCTTG+CGG | + | tig0026915:32506-32525 | Msa1431860:intron | 30.0% |
| AAAATTTGATCCTTCTGATG+TGG | + | tig0026915:32663-32682 | Msa1431860:CDS | 30.0% | |
| TCAAATACAATGGACAAAGT+GGG | - | tig0026915:32859-32878 | None:intergenic | 30.0% | |
| ATCAAATACAATGGACAAAG+TGG | - | tig0026915:32860-32879 | None:intergenic | 30.0% | |
| AGCTCATTGATCAAATACAA+TGG | - | tig0026915:32869-32888 | None:intergenic | 30.0% | |
| ATTGTATTTGATCAATGAGC+TGG | + | tig0026915:32868-32887 | Msa1431860:intron | 30.0% | |
| ! | AGAACATACACATTCTGAAA+TGG | + | tig0026915:32908-32927 | Msa1431860:intron | 30.0% |
| ! | CACATGTAATTTGTAACCAT+GGG | - | tig0026915:33019-33038 | None:intergenic | 30.0% |
| ! | TCACATGTAATTTGTAACCA+TGG | - | tig0026915:33020-33039 | None:intergenic | 30.0% |
| TGGTTACAAATTACATGTGA+AGG | + | tig0026915:33020-33039 | Msa1431860:intron | 30.0% | |
| GGTTACAAATTACATGTGAA+GGG | + | tig0026915:33021-33040 | Msa1431860:intron | 30.0% | |
| CATTAGACTAATATGGAATG+CGG | - | tig0026915:33266-33285 | None:intergenic | 30.0% | |
| CATAATGTAACTGACATTCT+TGG | + | tig0026915:33405-33424 | Msa1431860:intron | 30.0% | |
| !! | TGATTAGGTTCTAGTTTGAA+GGG | - | tig0026915:33466-33485 | None:intergenic | 30.0% |
| !! | TTGATTAGGTTCTAGTTTGA+AGG | - | tig0026915:33467-33486 | None:intergenic | 30.0% |
| !! | TAGATTTTTGGGCTTGATTT+AGG | - | tig0026915:33548-33567 | None:intergenic | 30.0% |
| ACGGAGGAAAATAAATATAG+CGG | + | tig0026915:33637-33656 | Msa1431860:intron | 30.0% | |
| !! | ATGACATTTGCTGATCTTTT+AGG | + | tig0026915:33697-33716 | Msa1431860:intron | 30.0% |
| GTGAATGCATATAGTAAACA+AGG | + | tig0026915:33762-33781 | Msa1431860:intron | 30.0% | |
| GAATGCATATAGTAAACAAG+GGG | + | tig0026915:33764-33783 | Msa1431860:intron | 30.0% | |
| CTTCAAAACAGAAAAAGATC+AGG | - | tig0026915:33838-33857 | None:intergenic | 30.0% | |
| TTTATAGGTGCTAAGAAAGA+TGG | + | tig0026915:33878-33897 | Msa1431860:intron | 30.0% | |
| TTATAGGTGCTAAGAAAGAT+GGG | + | tig0026915:33879-33898 | Msa1431860:intron | 30.0% | |
| ACAATGAATGCATATAGTTC+TGG | + | tig0026915:33926-33945 | Msa1431860:CDS | 30.0% | |
| ACCAAAGCTATAATAGAACA+TGG | + | tig0026915:34022-34041 | Msa1431860:CDS | 30.0% | |
| TCCATGTTCTATTATAGCTT+TGG | - | tig0026915:34026-34045 | None:intergenic | 30.0% | |
| AATAGAACATGGAGAACATA+AGG | + | tig0026915:34033-34052 | Msa1431860:CDS | 30.0% | |
| ATAGAACATGGAGAACATAA+GGG | + | tig0026915:34034-34053 | Msa1431860:CDS | 30.0% | |
| TAAGGGATTTAAGAAGATCA+TGG | + | tig0026915:34051-34070 | Msa1431860:CDS | 30.0% | |
| AACACAGAAAAGTGAAAAGA+AGG | + | tig0026915:34538-34557 | Msa1431860:intron | 30.0% | |
| TTCTATGAGGTGGAATAATA+AGG | - | tig0026915:34632-34651 | None:intergenic | 30.0% | |
| ! | TACTTTTATCTTCTATGAGG+TGG | - | tig0026915:34642-34661 | None:intergenic | 30.0% |
| AAAACACATACAACTTTGCA+TGG | + | tig0026915:34887-34906 | Msa1431860:CDS | 30.0% | |
| TGATCCTGAATATCAAATTG+CGG | - | tig0026915:34937-34956 | None:intergenic | 30.0% | |
| ATCTTGAATATCAGATTGCA+GGG | - | tig0026915:35007-35026 | None:intergenic | 30.0% | |
| ATTCTGAATATCAGTTTGCA+GGG | - | tig0026915:35070-35089 | None:intergenic | 30.0% | |
| AAATCTCGTCACACAATAAT+AGG | - | tig0026915:35173-35192 | None:intergenic | 30.0% | |
| AAGCCTCAAATTATGGTTAT+TGG | + | tig0026915:35356-35375 | Msa1431860:intron | 30.0% | |
| CAACCAATAACCATAATTTG+AGG | - | tig0026915:35362-35381 | None:intergenic | 30.0% | |
| ! | ATTTTTCCAAGTTACTGACA+TGG | + | tig0026915:35401-35420 | Msa1431860:intron | 30.0% |
| TTCATGCAGAATTTGACATT+TGG | + | tig0026915:35440-35459 | Msa1431860:intron | 30.0% | |
| ! | TGGTGTATTTTGTTCTTCTA+TGG | + | tig0026915:35676-35695 | Msa1431860:three_prime_UTR | 30.0% |
| AACTGTTCAAACCCTAACAA+AGG | - | tig0026915:31391-31410 | None:intergenic | 35.0% | |
| !! | GTTCAATTGGTTTGAGCTAA+CGG | - | tig0026915:31424-31443 | None:intergenic | 35.0% |
| GAGAAACTGGATAGTTCAAT+TGG | - | tig0026915:31437-31456 | None:intergenic | 35.0% | |
| ATTGAACTATCCAGTTTCTC+GGG | + | tig0026915:31437-31456 | Msa1431860:intron | 35.0% | |
| !!! | TTGACTTTTTGGGTTTGTGA+TGG | + | tig0026915:31532-31551 | Msa1431860:intron | 35.0% |
| TGGTCAATGAATGATGTGAA+TGG | + | tig0026915:31552-31571 | Msa1431860:intron | 35.0% | |
| CACATTGACATTGCAGAAAA+TGG | + | tig0026915:31669-31688 | Msa1431860:intron | 35.0% | |
| TTGACTTTAAACCACGATTG+AGG | + | tig0026915:31837-31856 | Msa1431860:intron | 35.0% | |
| TGAGGATGAATCAGTTGTAT+TGG | + | tig0026915:31855-31874 | Msa1431860:intron | 35.0% | |
| CTATACCAAAGATTGCTACA+CGG | + | tig0026915:31892-31911 | Msa1431860:intron | 35.0% | |
| AATGACAGTTTGGACATTCA+CGG | - | tig0026915:32277-32296 | None:intergenic | 35.0% | |
| TCTATACGACAATGACAGTT+TGG | - | tig0026915:32287-32306 | None:intergenic | 35.0% | |
| GCAAAGTCAATAGAAACATG+AGG | - | tig0026915:32431-32450 | None:intergenic | 35.0% | |
| ! | ACCCTGCATTTTTCTTTTGT+TGG | + | tig0026915:32469-32488 | Msa1431860:intron | 35.0% |
| !!! | AATGTTGTTTTTGCCTGTGT+AGG | + | tig0026915:32606-32625 | Msa1431860:intron | 35.0% |
| ! | AGGATCAAATTTTATGCCGA+GGG | - | tig0026915:32656-32675 | None:intergenic | 35.0% |
| ! | AAGGATCAAATTTTATGCCG+AGG | - | tig0026915:32657-32676 | None:intergenic | 35.0% |
| TCCTTCTGATGTGGAAATAT+TGG | + | tig0026915:32672-32691 | Msa1431860:CDS | 35.0% | |
| TCCAATATTTCCACATCAGA+AGG | - | tig0026915:32676-32695 | None:intergenic | 35.0% | |
| ! | GGAAATATTGGAGCATTTAG+CGG | + | tig0026915:32684-32703 | Msa1431860:CDS | 35.0% |
| CAAATACAATGGACAAAGTG+GGG | - | tig0026915:32858-32877 | None:intergenic | 35.0% | |
| AGCTGGTAAAATGAATTGAG+TGG | + | tig0026915:32885-32904 | Msa1431860:intron | 35.0% | |
| GGGAAACTAAAGCAAACTAT+AGG | + | tig0026915:33041-33060 | Msa1431860:intron | 35.0% | |
| ATCTTGAAAGTGATAAGGGA+TGG | + | tig0026915:33210-33229 | Msa1431860:intron | 35.0% | |
| ATTGATATCTGCCAGAAAGT+TGG | + | tig0026915:33331-33350 | Msa1431860:intron | 35.0% | |
| !! | ATTAGGTTCTAGTTTGAAGG+GGG | - | tig0026915:33464-33483 | None:intergenic | 35.0% |
| !! | GATTAGGTTCTAGTTTGAAG+GGG | - | tig0026915:33465-33484 | None:intergenic | 35.0% |
| ! | TGACATGTGTTTGTTGAAGT+GGG | - | tig0026915:33593-33612 | None:intergenic | 35.0% |
| ! | ATGACATGTGTTTGTTGAAG+TGG | - | tig0026915:33594-33613 | None:intergenic | 35.0% |
| CAACAAACACATGTCATGTT+CGG | + | tig0026915:33597-33616 | Msa1431860:intron | 35.0% | |
| !! | TCTTTTAGGTGTACGAAACA+TGG | + | tig0026915:33711-33730 | Msa1431860:intron | 35.0% |
| !! | CTTTTAGGTGTACGAAACAT+GGG | + | tig0026915:33712-33731 | Msa1431860:intron | 35.0% |
| !! | TTTTAGGTGTACGAAACATG+GGG | + | tig0026915:33713-33732 | Msa1431860:intron | 35.0% |
| AACCACGATGATGAATCTTT+CGG | - | tig0026915:33964-33983 | None:intergenic | 35.0% | |
| ! | CATTTTCCAGTCAGATTTGT+AGG | - | tig0026915:34110-34129 | None:intergenic | 35.0% |
| AAAATGCATCAGTACCATCT+AGG | + | tig0026915:34124-34143 | Msa1431860:CDS | 35.0% | |
| AAATGCATCAGTACCATCTA+GGG | + | tig0026915:34125-34144 | Msa1431860:CDS | 35.0% | |
| ! | ACAGGAAAATGTGTTGACAA+TGG | + | tig0026915:34307-34326 | Msa1431860:CDS | 35.0% |
| ! | GTAACAATCTATGCTGCTTA+TGG | + | tig0026915:34371-34390 | Msa1431860:intron | 35.0% |
| AGATAGAACAGAAACCAAAC+TGG | + | tig0026915:34606-34625 | Msa1431860:intron | 35.0% | |
| ATCCTGAATATCAGATTGCA+TGG | - | tig0026915:34863-34882 | None:intergenic | 35.0% | |
| ATCCTGAATATCAAATTGCG+GGG | - | tig0026915:34935-34954 | None:intergenic | 35.0% | |
| GATCCTGAATATCAAATTGC+GGG | - | tig0026915:34936-34955 | None:intergenic | 35.0% | |
| GCAATTTGATATTCAGGATC+AGG | + | tig0026915:34936-34955 | Msa1431860:CDS | 35.0% | |
| GATCTTGAATATCAGATTGC+AGG | - | tig0026915:35008-35027 | None:intergenic | 35.0% | |
| GATTCTGAATATCAGTTTGC+AGG | - | tig0026915:35071-35090 | None:intergenic | 35.0% | |
| GCAAACTGATATTCAGAATC+AGG | + | tig0026915:35071-35090 | Msa1431860:CDS | 35.0% | |
| ATAACACAAACAACTCTGCA+TGG | + | tig0026915:35094-35113 | Msa1431860:CDS | 35.0% | |
| ATCACAGGCTATGGAAAATT+CGG | + | tig0026915:35128-35147 | Msa1431860:CDS | 35.0% | |
| ATGGAAAATTCGGAATATGC+CGG | + | tig0026915:35138-35157 | Msa1431860:CDS | 35.0% | |
| CACTACGAAAACAAAATGAC+AGG | + | tig0026915:35249-35268 | Msa1431860:CDS | 35.0% | |
| TTTCGGTAAGCCTCAAATTA+TGG | + | tig0026915:35349-35368 | Msa1431860:intron | 35.0% | |
| AAAACGCTTCTGGTACAAAA+AGG | - | tig0026915:35529-35548 | None:intergenic | 35.0% | |
| ! | TTTGAATTTTGTCAAAGCCG+TGG | + | tig0026915:35715-35734 | Msa1431860:three_prime_UTR | 35.0% |
| AGATCTATTCACCAATTCCA+CGG | - | tig0026915:35735-35754 | None:intergenic | 35.0% | |
| GGAATTGGTGAATAGATCTT+TGG | + | tig0026915:35736-35755 | Msa1431860:three_prime_UTR | 35.0% | |
| ! | CTTTGGTACTGAAATCCAAA+TGG | + | tig0026915:35753-35772 | Msa1431860:three_prime_UTR | 35.0% |
| TGTTCAAACCCTAACAAAGG+AGG | - | tig0026915:31388-31407 | None:intergenic | 40.0% | |
| ! | AACTGATTCATCCTCAATCG+TGG | - | tig0026915:31851-31870 | None:intergenic | 40.0% |
| GAATCAGTTGTATTGGACTG+TGG | + | tig0026915:31862-31881 | Msa1431860:intron | 40.0% | |
| ! | CACGGTCGCAATCTAAAATT+TGG | + | tig0026915:31910-31929 | Msa1431860:intron | 40.0% |
| !! | ATTTGGCCCTTGTATTTTGG+TGG | + | tig0026915:31927-31946 | Msa1431860:intron | 40.0% |
| GCTTAAAAAGACGTCTGCTT+AGG | - | tig0026915:32072-32091 | None:intergenic | 40.0% | |
| TTGATTTATCCTGCAGGGAA+TGG | + | tig0026915:32168-32187 | Msa1431860:intron | 40.0% | |
| ! | GGATCAAATTTTATGCCGAG+GGG | - | tig0026915:32655-32674 | None:intergenic | 40.0% |
| AAAGCCTCACATGTTTATCG+AGG | + | tig0026915:32729-32748 | Msa1431860:CDS | 40.0% | |
| AACTCCTCGATAAACATGTG+AGG | - | tig0026915:32736-32755 | None:intergenic | 40.0% | |
| GAGTTCATACCAACATTGGA+AGG | + | tig0026915:32751-32770 | Msa1431860:CDS | 40.0% | |
| ACACATCCTGAAAATCTTCC+AGG | + | tig0026915:32793-32812 | Msa1431860:CDS | 40.0% | |
| ! | TTCTCACCTGGAAGATTTTC+AGG | - | tig0026915:32802-32821 | None:intergenic | 40.0% |
| GTACATTGTGACCAACTTTC+TGG | - | tig0026915:33345-33364 | None:intergenic | 40.0% | |
| TGCTAGAGTTATGGTATTGC+AGG | - | tig0026915:33431-33450 | None:intergenic | 40.0% | |
| ! | ACGGTTTTCTGCTAGAGTTA+TGG | - | tig0026915:33440-33459 | None:intergenic | 40.0% |
| TGGGCTTGATTTAGGTGAAA+TGG | - | tig0026915:33540-33559 | None:intergenic | 40.0% | |
| ! | GACATGTGTTTGTTGAAGTG+GGG | - | tig0026915:33592-33611 | None:intergenic | 40.0% |
| TGTTCGGTACTCTTTGTTGA+TGG | + | tig0026915:33613-33632 | Msa1431860:intron | 40.0% | |
| GTTCGGTACTCTTTGTTGAT+GGG | + | tig0026915:33614-33633 | Msa1431860:intron | 40.0% | |
| CAAGGGGTTTAAGAAGATCA+TGG | + | tig0026915:33780-33799 | Msa1431860:intron | 40.0% | |
| ACTGATGAAGACGAGAAGAA+TGG | + | tig0026915:34148-34167 | Msa1431860:CDS | 40.0% | |
| GTTCGCAATGTTATACTGTC+AGG | - | tig0026915:34244-34263 | None:intergenic | 40.0% | |
| TAACATTGCGAACAAGTCCA+AGG | + | tig0026915:34251-34270 | Msa1431860:CDS | 40.0% | |
| ! | TCAACACATTTTCCTGTACG+CGG | - | tig0026915:34304-34323 | None:intergenic | 40.0% |
| TTGTTACACACCTCTGCAAA+TGG | - | tig0026915:34358-34377 | None:intergenic | 40.0% | |
| GTGGAATAATAAGGCCAGTT+TGG | - | tig0026915:34623-34642 | None:intergenic | 40.0% | |
| GCATGGCATTTGATTCTACA+GGG | - | tig0026915:34846-34865 | None:intergenic | 40.0% | |
| TGCATGGCATTTGATTCTAC+AGG | - | tig0026915:34847-34866 | None:intergenic | 40.0% | |
| TGCCATGCAATCTGATATTC+AGG | + | tig0026915:34858-34877 | Msa1431860:CDS | 40.0% | |
| GCAATCTGATATTCAGGATC+AGG | + | tig0026915:34864-34883 | Msa1431860:CDS | 40.0% | |
| CACATACAACTTTGCATGGT+TGG | + | tig0026915:34891-34910 | Msa1431860:CDS | 40.0% | |
| ACAACACATTCAACTCTGCA+TGG | + | tig0026915:34959-34978 | Msa1431860:CDS | 40.0% | |
| CAATAATAGGTCATCCAAGC+CGG | - | tig0026915:35160-35179 | None:intergenic | 40.0% | |
| TATCCAATTCCAGTGTATCC+AGG | - | tig0026915:35311-35330 | None:intergenic | 40.0% | |
| TCCTCCAGAGTATGATCTTT+CGG | + | tig0026915:35332-35351 | Msa1431860:CDS | 40.0% | |
| CTTACCGAAAGATCATACTC+TGG | - | tig0026915:35339-35358 | None:intergenic | 40.0% | |
| CACATACCATGTCAGTAACT+TGG | - | tig0026915:35410-35429 | None:intergenic | 40.0% | |
| ! | GACAGTATCCTTGGTTTGAT+AGG | + | tig0026915:35473-35492 | Msa1431860:CDS | 40.0% |
| ! | AGTATCCTTGGTTTGATAGG+TGG | + | tig0026915:35476-35495 | Msa1431860:CDS | 40.0% |
| ! | GTATCCTTGGTTTGATAGGT+GGG | + | tig0026915:35477-35496 | Msa1431860:CDS | 40.0% |
| AGAACTGAACAAAACGCTTC+TGG | - | tig0026915:35539-35558 | None:intergenic | 40.0% | |
| ! | TTTTGTCAAAGCCGTGGAAT+TGG | + | tig0026915:35721-35740 | Msa1431860:three_prime_UTR | 40.0% |
| ! | AGAGCGAGTTGAGTGTTGTT+CGG | - | tig0026915:31131-31150 | None:intergenic | 45.0% |
| CTATCCAGTTTCTCGGGTTT+CGG | + | tig0026915:31443-31462 | Msa1431860:intron | 45.0% | |
| !! | AATGTGGTGTTGTGTAGGCT+AGG | + | tig0026915:31468-31487 | Msa1431860:intron | 45.0% |
| !! | ATGTGGTGTTGTGTAGGCTA+GGG | + | tig0026915:31469-31488 | Msa1431860:intron | 45.0% |
| TCAGCACCACCACATATGAA+TGG | + | tig0026915:31762-31781 | Msa1431860:intron | 45.0% | |
| !! | TCTCTAAAACCCTAATGCCG+CGG | - | tig0026915:31812-31831 | None:intergenic | 45.0% |
| GTTAATTAGCCATTCCCTGC+AGG | - | tig0026915:32180-32199 | None:intergenic | 45.0% | |
| CTCTTCAGCTGATCAGATCA+AGG | + | tig0026915:32238-32257 | Msa1431860:CDS | 45.0% | |
| GCTGATCAGATCAAGGATTG+TGG | + | tig0026915:32245-32264 | Msa1431860:CDS | 45.0% | |
| CACTCACTAGAAACCTACAC+AGG | - | tig0026915:32622-32641 | None:intergenic | 45.0% | |
| !! | CTGTGTAGGTTTCTAGTGAG+TGG | + | tig0026915:32620-32639 | Msa1431860:intron | 45.0% |
| GAGCATTTAGCGGCTAAATG+CGG | + | tig0026915:32694-32713 | Msa1431860:CDS | 45.0% | |
| CGAGGAGTTCATACCAACAT+TGG | + | tig0026915:32747-32766 | Msa1431860:CDS | 45.0% | |
| CCTTGTTCTCCTTCCAATGT+TGG | - | tig0026915:32763-32782 | None:intergenic | 45.0% | |
| CCAACATTGGAAGGAGAACA+AGG | + | tig0026915:32760-32779 | Msa1431860:CDS | 45.0% | |
| TTGGACTGAGAATTCTCACC+TGG | - | tig0026915:32814-32833 | None:intergenic | 45.0% | |
| CATTTGTGAAGACAGTCCCA+TGG | + | tig0026915:33000-33019 | Msa1431860:intron | 45.0% | |
| !! | GTTCTAGTTTGAAGGGGGAA+CGG | - | tig0026915:33459-33478 | None:intergenic | 45.0% |
| ! | GGTACTCTTTGTTGATGGGA+CGG | + | tig0026915:33618-33637 | Msa1431860:intron | 45.0% |
| CCAGTCAGATTTGTAGGACT+TGG | - | tig0026915:34104-34123 | None:intergenic | 45.0% | |
| CCAAGTCCTACAAATCTGAC+TGG | + | tig0026915:34101-34120 | Msa1431860:CDS | 45.0% | |
| ! | GGATTTGGAGGATTTGGGTT+TGG | - | tig0026915:34280-34299 | None:intergenic | 45.0% |
| ! | TTCACTGTTGCCATTTGCAG+AGG | + | tig0026915:34345-34364 | Msa1431860:CDS | 45.0% |
| TACAACTTTGCATGGTTGGC+TGG | + | tig0026915:34895-34914 | Msa1431860:CDS | 45.0% | |
| TGCCCCGCAATTTGATATTC+AGG | + | tig0026915:34930-34949 | Msa1431860:CDS | 45.0% | |
| CACATTCAACTCTGCATGGT+TGG | + | tig0026915:34963-34982 | Msa1431860:CDS | 45.0% | |
| AAGATCACGACAACTCTGCA+TGG | + | tig0026915:35022-35041 | Msa1431860:CDS | 45.0% | |
| CACAAACAACTCTGCATGGT+TGG | + | tig0026915:35098-35117 | Msa1431860:CDS | 45.0% | |
| ! | AAATTCGGAATATGCCGGCT+TGG | + | tig0026915:35143-35162 | Msa1431860:CDS | 45.0% |
| TGAAACTTCAACTGCTGTCC+TGG | + | tig0026915:35290-35309 | Msa1431860:CDS | 45.0% | |
| TGTCCTGGATACACTGGAAT+TGG | + | tig0026915:35305-35324 | Msa1431860:CDS | 45.0% | |
| ACCGAAAGATCATACTCTGG+AGG | - | tig0026915:35336-35355 | None:intergenic | 45.0% | |
| TCTCAAGACGACAGTATCCT+TGG | + | tig0026915:35464-35483 | Msa1431860:CDS | 45.0% | |
| ATAGCCCACCTATCAAACCA+AGG | - | tig0026915:35484-35503 | None:intergenic | 45.0% | |
| !! | GTTTGATAGGTGGGCTATGA+GGG | + | tig0026915:35486-35505 | Msa1431860:CDS | 45.0% |
| !! | TTTGATAGGTGGGCTATGAG+GGG | + | tig0026915:35487-35506 | Msa1431860:exon | 45.0% |
| TTCTCCGAAACCCGAGAAAC+TGG | - | tig0026915:31450-31469 | None:intergenic | 50.0% | |
| TTCTCGGGTTTCGGAGAATG+TGG | + | tig0026915:31452-31471 | Msa1431860:intron | 50.0% | |
| !! | CGGAGAATGTGGTGTTGTGT+AGG | + | tig0026915:31463-31482 | Msa1431860:intron | 50.0% |
| TGCGACCGTGTAGCAATCTT+TGG | - | tig0026915:31900-31919 | None:intergenic | 50.0% | |
| !! | TAGGTTTCTAGTGAGTGGCC+TGG | + | tig0026915:32625-32644 | Msa1431860:intron | 50.0% |
| TTAGCGGCTAAATGCGGTGT+TGG | + | tig0026915:32700-32719 | Msa1431860:CDS | 50.0% | |
| TAGCGGCTAAATGCGGTGTT+GGG | + | tig0026915:32701-32720 | Msa1431860:CDS | 50.0% | |
| AAGGGATGGTCTCTAGTCTG+TGG | + | tig0026915:33224-33243 | Msa1431860:intron | 50.0% | |
| CTTCTGCACACAGCACACAA+TGG | + | tig0026915:33294-33313 | Msa1431860:intron | 50.0% | |
| ! | ACTCTTTGTTGATGGGACGG+AGG | + | tig0026915:33621-33640 | Msa1431860:intron | 50.0% |
| CGCCGAAAGATTCATCATCG+TGG | + | tig0026915:33959-33978 | Msa1431860:CDS | 50.0% | |
| CAACTGAAGACCATGTACGC+TGG | + | tig0026915:33984-34003 | Msa1431860:CDS | 50.0% | |
| CGTCTTCATCAGTCCCTAGA+TGG | - | tig0026915:34141-34160 | None:intergenic | 50.0% | |
| ! | GGATTTGGGTTTGGAGTCCT+TGG | - | tig0026915:34271-34290 | None:intergenic | 50.0% |
| ! | GCGGTGGATTTGGAGGATTT+GGG | - | tig0026915:34285-34304 | None:intergenic | 50.0% |
| ! | TTTCCTGTACGCGGTGGATT+TGG | - | tig0026915:34295-34314 | None:intergenic | 50.0% |
| ! | ACACATTTTCCTGTACGCGG+TGG | - | tig0026915:34301-34320 | None:intergenic | 50.0% |
| ! | ATGGTTGGCTGGTGAATCAC+AGG | + | tig0026915:34906-34925 | Msa1431860:CDS | 50.0% |
| TTCAACTCTGCATGGTTGGC+TGG | + | tig0026915:34967-34986 | Msa1431860:CDS | 50.0% | |
| ! | ATGGTTGGCTGGTGAATCAC+AGG | + | tig0026915:34906-34925 | Msa1431860:CDS | 50.0% |
| TCACGACAACTCTGCATGGT+TGG | + | tig0026915:35026-35045 | Msa1431860:CDS | 50.0% | |
| AACAACTCTGCATGGTTGGC+TGG | + | tig0026915:35102-35121 | Msa1431860:CDS | 50.0% | |
| ! | ATGGTTGGCTGGTGAATCAC+AGG | + | tig0026915:34906-34925 | Msa1431860:CDS | 50.0% |
| AACTGCTGTCCTGGATACAC+TGG | + | tig0026915:35299-35318 | Msa1431860:CDS | 50.0% | |
| !! | GGTTTGATAGGTGGGCTATG+AGG | + | tig0026915:35485-35504 | Msa1431860:CDS | 50.0% |
| GTGTAGGCTAGGGTGTGACA+TGG | + | tig0026915:31479-31498 | Msa1431860:intron | 55.0% | |
| TGTGATCGCGATATAGGCCG+CGG | + | tig0026915:31792-31811 | Msa1431860:intron | 55.0% | |
| CGATATAGGCCGCGGCATTA+GGG | + | tig0026915:31800-31819 | Msa1431860:intron | 55.0% | |
| TTTATGCCGAGGGGAAAGCC+AGG | - | tig0026915:32646-32665 | None:intergenic | 55.0% | |
| ! | CAGTCTTGTGCCAGCGTACA+TGG | - | tig0026915:33997-34016 | None:intergenic | 55.0% |
| CATGTACGCTGGCACAAGAC+TGG | + | tig0026915:33995-34014 | Msa1431860:CDS | 55.0% | |
| ! | CGCGGTGGATTTGGAGGATT+TGG | - | tig0026915:34286-34305 | None:intergenic | 55.0% |
| GACAACTCTGCATGGTTGGC+CGG | + | tig0026915:35030-35049 | Msa1431860:CDS | 55.0% | |
| GGCTGGTGAATCACAGGCTA+TGG | + | tig0026915:35119-35138 | Msa1431860:CDS | 55.0% | |
| GCGATATAGGCCGCGGCATT+AGG | + | tig0026915:31799-31818 | Msa1431860:intron | 60.0% | |
| ! | CCTGTACGCGGTGGATTTGG+AGG | - | tig0026915:34292-34311 | None:intergenic | 60.0% |
| CCTCCAAATCCACCGCGTAC+AGG | + | tig0026915:34289-34308 | Msa1431860:CDS | 60.0% | |
| CAGGGCAGCTTGCGATTCAC+CGG | - | tig0026915:35052-35071 | None:intergenic | 60.0% | |
| ! | GAGTGGCCTGGCTTTCCCCT+CGG | + | tig0026915:32637-32656 | Msa1431860:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026915 | gene | 31084 | 35816 | 31084 | ID=Msa1431860;Name=Msa1431860 |
| tig0026915 | mRNA | 31084 | 35816 | 31084 | ID=Msa1431860-mRNA-1;Parent=Msa1431860;Name=Msa1431860-mRNA-1;_AED=0.04;_eAED=0.04;_QI=119|1|0.83|1|1|1|6|311|463 |
| tig0026915 | exon | 31084 | 31210 | 31084 | ID=Msa1431860-mRNA-1:exon:7765;Parent=Msa1431860-mRNA-1 |
| tig0026915 | exon | 32184 | 32316 | 32184 | ID=Msa1431860-mRNA-1:exon:7766;Parent=Msa1431860-mRNA-1 |
| tig0026915 | exon | 32628 | 32814 | 32628 | ID=Msa1431860-mRNA-1:exon:7767;Parent=Msa1431860-mRNA-1 |
| tig0026915 | exon | 33885 | 34366 | 33885 | ID=Msa1431860-mRNA-1:exon:7768;Parent=Msa1431860-mRNA-1 |
| tig0026915 | exon | 34829 | 35353 | 34829 | ID=Msa1431860-mRNA-1:exon:7769;Parent=Msa1431860-mRNA-1 |
| tig0026915 | exon | 35449 | 35816 | 35449 | ID=Msa1431860-mRNA-1:exon:7770;Parent=Msa1431860-mRNA-1 |
| tig0026915 | five_prime_UTR | 31084 | 31202 | 31084 | ID=Msa1431860-mRNA-1:five_prime_utr;Parent=Msa1431860-mRNA-1 |
| tig0026915 | CDS | 31203 | 31210 | 31203 | ID=Msa1431860-mRNA-1:cds;Parent=Msa1431860-mRNA-1 |
| tig0026915 | CDS | 32184 | 32316 | 32184 | ID=Msa1431860-mRNA-1:cds;Parent=Msa1431860-mRNA-1 |
| tig0026915 | CDS | 32628 | 32814 | 32628 | ID=Msa1431860-mRNA-1:cds;Parent=Msa1431860-mRNA-1 |
| tig0026915 | CDS | 33885 | 34366 | 33885 | ID=Msa1431860-mRNA-1:cds;Parent=Msa1431860-mRNA-1 |
| tig0026915 | CDS | 34829 | 35353 | 34829 | ID=Msa1431860-mRNA-1:cds;Parent=Msa1431860-mRNA-1 |
| tig0026915 | CDS | 35449 | 35505 | 35449 | ID=Msa1431860-mRNA-1:cds;Parent=Msa1431860-mRNA-1 |
| tig0026915 | three_prime_UTR | 35506 | 35816 | 35506 | ID=Msa1431860-mRNA-1:three_prime_utr;Parent=Msa1431860-mRNA-1 |
| Gene Sequence |
| Protein sequence |
