AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1433640

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433640 MtrunA17_Chr4g0060681 97.855 373 8 0 1 373 1 373 0.0 745
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1433640 AT1G74640.1 70.621 354 98 3 19 370 19 368 0.0 519

Find 136 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCCAACTGCAGGCGCCTTTA+AGG 0.104317 tig0027382:-30137 None:intergenic
TTGGCATCATCAAGATATTT+TGG 0.129202 tig0027382:-28470 None:intergenic
CAATTCTTGCAACAGAATTT+TGG 0.177594 tig0027382:+30550 Msa1433640:CDS
GAGAAAGGGTTTGCGAAATT+TGG 0.180260 tig0027382:-27156 None:intergenic
AGTAGTCCGTGCTGCGAAAA+AGG 0.196098 tig0027382:+29716 Msa1433640:CDS
TGATATAATGAAAAGGTTTA+AGG 0.201671 tig0027382:-27041 None:intergenic
CCTTCAACTCTTTGCAGATT+TGG 0.235687 tig0027382:+30360 Msa1433640:CDS
AGTCCAGTGGGAAATGATTT+TGG 0.244831 tig0027382:-30741 None:intergenic
GGTCCCCTTCCTATCGTATT+TGG 0.283801 tig0027382:+29786 Msa1433640:CDS
ATGGCTGGTGTCACGTTATC+AGG 0.302525 tig0027382:-30235 None:intergenic
TGTTAAACTAGACAACAATT+TGG 0.317013 tig0027382:+29662 Msa1433640:intron
TCTTCTAAGAGGCACCTTAA+AGG 0.331435 tig0027382:+30123 Msa1433640:CDS
TGAAATTCTGCATCCTCTAA+TGG 0.335653 tig0027382:+27082 Msa1433640:exon
TTACCCGCGGCTTTCTTGAC+TGG 0.345149 tig0027382:+30304 Msa1433640:CDS
TTTAATAAATATTTATTATG+AGG 0.349662 tig0027382:+28419 Msa1433640:CDS
TCAGCATTGTAATCAATCTT+TGG 0.350565 tig0027382:-28618 None:intergenic
TAACTGTTTCCACAAATTAG+AGG 0.361127 tig0027382:+30799 Msa1433640:three_prime_UTR
TTCTTAAACCCTTGAAGATC+CGG 0.361648 tig0027382:+27195 Msa1433640:CDS
CAACTAAAGGGTCTCCTAAA+AGG 0.373750 tig0027382:+30410 Msa1433640:CDS
ACCTTAAAGGCGCCTGCAGT+TGG 0.374128 tig0027382:+30136 Msa1433640:CDS
TTAGTTGATACAACAAATAC+TGG 0.382699 tig0027382:-30394 None:intergenic
GCAACAGCAGCTATAGCTTT+GGG 0.386160 tig0027382:-29750 None:intergenic
GTTAGCTATGAAGATTCATA+TGG 0.386956 tig0027382:-30852 None:intergenic
ATTGTTGATTGGCCTGGTCT+AGG 0.387080 tig0027382:+28582 Msa1433640:CDS
CCAAATCTGCAAAGAGTTGA+AGG 0.392385 tig0027382:-30360 None:intergenic
TGCAACAGCAGCTATAGCTT+TGG 0.393323 tig0027382:-29751 None:intergenic
ATAGTTATTCTCACCTTCAA+TGG 0.393751 tig0027382:-27269 None:intergenic
ATAAACAGAGTGAGAGAGAA+AGG 0.394175 tig0027382:-27171 None:intergenic
GCTGTTGCACCCACTTGGTC+TGG 0.395668 tig0027382:+29765 Msa1433640:CDS
ACCGCACTACTATTGTTGAT+TGG 0.409875 tig0027382:+28571 Msa1433640:CDS
CCTTAAAGGCGCCTGCAGTT+GGG 0.416753 tig0027382:+30137 Msa1433640:CDS
TAGTTATTCTCACCTTCAAT+GGG 0.421788 tig0027382:-27268 None:intergenic
GGCACAAAGATACTGAATAA+TGG 0.424213 tig0027382:-30928 None:intergenic
TGGAAACAGTTATCTTTCAC+TGG 0.425630 tig0027382:-30788 None:intergenic
GATTTCATCAATTCACCCTA+TGG 0.425874 tig0027382:+28663 Msa1433640:CDS
AACATGTCGCCTCTAATTTG+TGG 0.430514 tig0027382:-30808 None:intergenic
GTTGCAGAGAGTGCCATTAG+AGG 0.440819 tig0027382:-27095 None:intergenic
GTATTTGTTGTATCAACTAA+AGG 0.441722 tig0027382:+30397 Msa1433640:CDS
TATTTGTTGTATCAACTAAA+GGG 0.442235 tig0027382:+30398 Msa1433640:CDS
GTGTAAAGGTTAGAACTTGA+AGG 0.449656 tig0027382:-27134 None:intergenic
GAATAATGGTAGGGGCCATC+AGG 0.452543 tig0027382:-30914 None:intergenic
GGTTGAAGAAAGATAGTAAT+GGG 0.452915 tig0027382:+30645 Msa1433640:three_prime_UTR
GTTTGCGAAATTTGGTGTAA+AGG 0.453319 tig0027382:-27148 None:intergenic
TGACAAATCTTCCCCATTGA+AGG 0.454945 tig0027382:+27256 Msa1433640:CDS
AACAGTGCTCACATCAGAAA+TGG 0.454974 tig0027382:-28493 None:intergenic
GCTGAGATGGAAGCTCTTAA+CGG 0.459166 tig0027382:+30439 Msa1433640:CDS
AGCTCTTCCGCGACTAAAGC+AGG 0.462416 tig0027382:-30523 None:intergenic
AGGGTCTCCTAAAAGGTCTA+AGG 0.474040 tig0027382:+30417 Msa1433640:CDS
TGATTACAATGCTGACGTCT+TGG 0.475636 tig0027382:+28626 Msa1433640:CDS
TGCACAGGCAATAATATTAG+TGG 0.476061 tig0027382:+30623 Msa1433640:three_prime_UTR
TCAACTCTTTGCAGATTTGG+AGG 0.476813 tig0027382:+30363 Msa1433640:CDS
TTGTTTCCATGCTGGAATCT+CGG 0.482856 tig0027382:-29809 None:intergenic
CTATCACGAATTTAGCTACA+TGG 0.483359 tig0027382:-26921 None:intergenic
TAGCTGCTGTTGCACCCACT+TGG 0.485030 tig0027382:+29760 Msa1433640:CDS
AAGAGACATTGGAATAATCA+AGG 0.490245 tig0027382:-27229 None:intergenic
ACTACTATTGTTGATTGGCC+TGG 0.490253 tig0027382:+28576 Msa1433640:CDS
ATCAGACTAGCAACTGGCAG+TGG 0.495627 tig0027382:+28382 Msa1433640:intron
TGAAGAATGATATAATGAAA+AGG 0.497054 tig0027382:-27048 None:intergenic
TCTTAAACCCTTGAAGATCC+GGG 0.498375 tig0027382:+27196 Msa1433640:CDS
TAAAAGGTCTAAGGCTGAGA+TGG 0.498747 tig0027382:+30426 Msa1433640:CDS
CAACTCTTTGCAGATTTGGA+GGG 0.500215 tig0027382:+30364 Msa1433640:CDS
TACATAAATATGTATACCCT+TGG 0.503007 tig0027382:-30669 None:intergenic
GAAGCTCTTAACGGAGCTAA+AGG 0.503984 tig0027382:+30448 Msa1433640:CDS
GGAACATGTGAAGGAGAGTT+CGG 0.504267 tig0027382:+28440 Msa1433640:CDS
CATGTGATTTGTACTGCGAT+TGG 0.504645 tig0027382:-30201 None:intergenic
TAAACAGAGTGAGAGAGAAA+GGG 0.504897 tig0027382:-27170 None:intergenic
TAAAGGAGTGAGCAAGTTTG+TGG 0.516133 tig0027382:+30465 Msa1433640:CDS
ATAGTACCTTGTTTCCATGC+TGG 0.516722 tig0027382:-29817 None:intergenic
TTTGTCACTGGAAGAGACAT+TGG 0.523723 tig0027382:-27240 None:intergenic
TGCATATCTGCTTTCGACAA+TGG 0.528904 tig0027382:-30254 None:intergenic
TGGTGTCACGTTATCAGGAT+TGG 0.532092 tig0027382:-30230 None:intergenic
CAAAGATACTGAATAATGGT+AGG 0.535120 tig0027382:-30924 None:intergenic
GACAGGTATGGTCTTCTAAG+AGG 0.537611 tig0027382:+30112 Msa1433640:intron
AGTTGAAGCCCGGATCTTCA+AGG 0.538256 tig0027382:-27204 None:intergenic
GAAGACATTGCTCAACGTAA+TGG 0.538261 tig0027382:+28537 Msa1433640:CDS
TTAGCTATGAAGATTCATAT+GGG 0.539283 tig0027382:-30851 None:intergenic
TACACCATCCACCCAACTGC+AGG 0.541976 tig0027382:-30148 None:intergenic
AGCAAGTTTGTGGAAGTGCC+TGG 0.543593 tig0027382:+30475 Msa1433640:CDS
GGCGCCTGCAGTTGGGTGGA+TGG 0.552084 tig0027382:+30144 Msa1433640:CDS
CTCGGCCAAATACGATAGGA+AGG 0.553390 tig0027382:-29791 None:intergenic
TGGTGCTCTTCTTCCACAAG+AGG 0.557293 tig0027382:+30495 Msa1433640:CDS
TATCTGCTTTCGACAATGGC+TGG 0.559916 tig0027382:-30250 None:intergenic
CACGGGATGTTACAGGGTCT+AGG 0.561594 tig0027382:-30330 None:intergenic
CAACTGGCAGTGGAAATTCA+AGG 0.569094 tig0027382:+28392 Msa1433640:CDS
CAATGGGGAAGATTTGTCAC+TGG 0.569238 tig0027382:-27252 None:intergenic
CACATGGTACTTGTGTATGT+TGG 0.570576 tig0027382:+30593 Msa1433640:three_prime_UTR
AGGAAGGGGACCAGACCAAG+TGG 0.570715 tig0027382:-29775 None:intergenic
AAAGATACTGAATAATGGTA+GGG 0.571487 tig0027382:-30923 None:intergenic
GTTGAAGCCCGGATCTTCAA+GGG 0.571737 tig0027382:-27203 None:intergenic
TTATTATGAGGAACATGTGA+AGG 0.571752 tig0027382:+28431 Msa1433640:CDS
TTGCCAAAATCATTTCCCAC+TGG 0.573272 tig0027382:+30738 Msa1433640:three_prime_UTR
AATCAAGGGTAGTTGAAGCC+CGG 0.574487 tig0027382:-27214 None:intergenic
GAGTTGAAGGAACTCCTCAC+GGG 0.577784 tig0027382:-30347 None:intergenic
CGGCCAAATACGATAGGAAG+GGG 0.580257 tig0027382:-29789 None:intergenic
GCACAGGCAATAATATTAGT+GGG 0.582169 tig0027382:+30624 Msa1433640:three_prime_UTR
TCTTGTGGAAGAAGAGCACC+AGG 0.583551 tig0027382:-30493 None:intergenic
TCTGCTATAGTTCCATTCCG+TGG 0.583780 tig0027382:+27007 Msa1433640:five_prime_UTR
TTCTGATGTGAGCACTGTTG+AGG 0.584543 tig0027382:+28497 Msa1433640:CDS
AGAGTTGAAGGAACTCCTCA+CGG 0.588545 tig0027382:-30348 None:intergenic
AGGTTAGAACTTGAAGGTGA+AGG 0.589083 tig0027382:-27128 None:intergenic
GGCCATCAGGATACCCACAC+AGG 0.589117 tig0027382:-30901 None:intergenic
AAAGATAGTAATGGGACCAA+GGG 0.591891 tig0027382:+30653 Msa1433640:three_prime_UTR
AAAGCAGGATACTCCTCTTG+TGG 0.594658 tig0027382:-30508 None:intergenic
GAAAGATAGTAATGGGACCA+AGG 0.595183 tig0027382:+30652 Msa1433640:three_prime_UTR
GTATACATATTTATGTAATG+TGG 0.599384 tig0027382:+30675 Msa1433640:three_prime_UTR
CGATCAGAATAACCTAGACC+AGG 0.599579 tig0027382:-28594 None:intergenic
GTGCTCACATCAGAAATGGT+TGG 0.600768 tig0027382:-28489 None:intergenic
GGAAACAGTTATCTTTCACT+GGG 0.602157 tig0027382:-30787 None:intergenic
AGAGACATTGGAATAATCAA+GGG 0.606155 tig0027382:-27228 None:intergenic
GAATCTCGGCCAAATACGAT+AGG 0.608486 tig0027382:-29795 None:intergenic
TAAAGGCGCCTGCAGTTGGG+TGG 0.609424 tig0027382:+30140 Msa1433640:CDS
GAGATTCCAGCATGGAAACA+AGG 0.610360 tig0027382:+29811 Msa1433640:CDS
AGTCCAGTCAAGAAAGCCGC+GGG 0.612625 tig0027382:-30307 None:intergenic
AAGATACTGAATAATGGTAG+GGG 0.612746 tig0027382:-30922 None:intergenic
AAGTCAAACATCAGTCCAGT+GGG 0.614257 tig0027382:-30753 None:intergenic
ATAAAATCTAATCAAGTCCA+CGG 0.616862 tig0027382:+26975 Msa1433640:five_prime_UTR
ACTCCTCACGGGATGTTACA+GGG 0.624393 tig0027382:-30336 None:intergenic
TCGGCCAAATACGATAGGAA+GGG 0.628777 tig0027382:-29790 None:intergenic
CAAGTCAAACATCAGTCCAG+TGG 0.629595 tig0027382:-30754 None:intergenic
GGGTTGAAGAAAGATAGTAA+TGG 0.642136 tig0027382:+30644 Msa1433640:three_prime_UTR
TATGTTGGTGAAGCTTGCAC+AGG 0.645457 tig0027382:+30608 Msa1433640:three_prime_UTR
GAGTCCAGTCAAGAAAGCCG+CGG 0.650624 tig0027382:-30308 None:intergenic
ATAGCAGAAAATACTGACCG+TGG 0.653567 tig0027382:-26992 None:intergenic
ACCCTGTGTGGGTATCCTGA+TGG 0.657405 tig0027382:+30899 Msa1433640:three_prime_UTR
ATGTGAGCACTGTTGAGGAG+TGG 0.662423 tig0027382:+28502 Msa1433640:CDS
TAGCTATGAAGATTCATATG+GGG 0.663913 tig0027382:-30850 None:intergenic
GTCGCTTAAAAGTTGACACA+TGG 0.670730 tig0027382:+30577 Msa1433640:exon
GCCAATCAACAATAGTAGTG+CGG 0.675154 tig0027382:-28572 None:intergenic
GGAGTATCCTGCTTTAGTCG+CGG 0.676120 tig0027382:+30516 Msa1433640:CDS
GGAAGGGGACCAGACCAAGT+GGG 0.693482 tig0027382:-29774 None:intergenic
GCCATCAGGATACCCACACA+GGG 0.702305 tig0027382:-30900 None:intergenic
AGTTATTCTCACCTTCAATG+GGG 0.717725 tig0027382:-27267 None:intergenic
ATTTGGCCGAGATTCCAGCA+TGG 0.719142 tig0027382:+29803 Msa1433640:CDS
TATGGTCCAGTAAAACAACC+AGG 0.727257 tig0027382:+28681 Msa1433640:CDS
AGACCCTGTAACATCCCGTG+AGG 0.736244 tig0027382:+30333 Msa1433640:CDS
TATGCATTGACAAAACGACA+AGG 0.775132 tig0027382:+30271 Msa1433640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTTATTTATTTTTTAAT+TGG + tig0027382:27308-27327 Msa1433640:intron 0.0%
!!! TTTTTTTTTTTAAAAGCAAT+TGG + tig0027382:27365-27384 Msa1433640:intron 10.0%
!! AAAATGAAAGAAAAAAAAAA+GGG - tig0027382:28360-28379 None:intergenic 10.0%
!! CTAAAATATATTTACTAAAT+TGG + tig0027382:28920-28939 Msa1433640:intron 10.0%
!! AAAAAATAGTGTTAGAAAAA+CGG + tig0027382:26883-26902 Msa1433640:five_prime_UTR 15.0%
!! AGTAAAATGACAAAAATTTA+AGG - tig0027382:27342-27361 None:intergenic 15.0%
!! GTTACTCTTAAATAAATAAA+AGG - tig0027382:28140-28159 None:intergenic 15.0%
!! AATATGGAAGAAAAAAAAAT+CGG - tig0027382:28320-28339 None:intergenic 15.0%
!!! TTTTTTTTTCTTCCATATTT+TGG + tig0027382:28321-28340 Msa1433640:intron 15.0%
!! GAAAATGAAAGAAAAAAAAA+AGG - tig0027382:28361-28380 None:intergenic 15.0%
!!! TATTATTTATAAGCTTGTTA+AGG - tig0027382:29079-29098 None:intergenic 15.0%
!! ATTAGATGGTAATATATAAA+AGG + tig0027382:29910-29929 Msa1433640:intron 15.0%
!! TTAGATGGTAATATATAAAA+GGG + tig0027382:29911-29930 Msa1433640:intron 15.0%
!! TTAAGGTTAATAAAAAACCA+CGG - tig0027382:27027-27046 None:intergenic 20.0%
!! TGATATAATGAAAAGGTTTA+AGG - tig0027382:27044-27063 None:intergenic 20.0%
!! TGAAGAATGATATAATGAAA+AGG - tig0027382:27051-27070 None:intergenic 20.0%
!! TAAATAAATAACTGATAGAG+AGG - tig0027382:27295-27314 None:intergenic 20.0%
!! GATTATTCATAATTCAAAGT+TGG + tig0027382:27397-27416 Msa1433640:intron 20.0%
!! TTACATGTATATCTAATTGT+TGG + tig0027382:27516-27535 Msa1433640:intron 20.0%
!! CTTAAATAAATAAAAGGCAA+GGG - tig0027382:28134-28153 None:intergenic 20.0%
!! TCTTAAATAAATAAAAGGCA+AGG - tig0027382:28135-28154 None:intergenic 20.0%
!! GATTTATACTCAATTTAAAG+AGG + tig0027382:28288-28307 Msa1433640:intron 20.0%
!!! ATTCCTCCTTTTAATTATTT+TGG + tig0027382:28842-28861 Msa1433640:intron 20.0%
!!! TTCCTCCTTTTAATTATTTT+GGG + tig0027382:28843-28862 Msa1433640:intron 20.0%
!! AACTACCCAAAATAATTAAA+AGG - tig0027382:28851-28870 None:intergenic 20.0%
!!! GGTTTATTTTCTTTATTGAT+TGG + tig0027382:29240-29259 Msa1433640:intron 20.0%
!!! TTATTTTCTTTATTGATTGG+TGG + tig0027382:29243-29262 Msa1433640:intron 20.0%
!!! TATTTTCTTTATTGATTGGT+GGG + tig0027382:29244-29263 Msa1433640:intron 20.0%
!! AAAAAAATGCTCATTGAAAA+GGG - tig0027382:29850-29869 None:intergenic 20.0%
!! TAGATGGTAATATATAAAAG+GGG + tig0027382:29912-29931 Msa1433640:intron 20.0%
!!! TATTTGTTGTATCAACTAAA+GGG + tig0027382:30398-30417 Msa1433640:CDS 20.0%
!! GTATACATATTTATGTAATG+TGG + tig0027382:30675-30694 Msa1433640:three_prime_UTR 20.0%
!! GACTTGATTAGATTTTATGT+TGG - tig0027382:26973-26992 None:intergenic 25.0%
! ATAAAATCTAATCAAGTCCA+CGG + tig0027382:26975-26994 Msa1433640:five_prime_UTR 25.0%
! ACGGTTAATCAACAAATTAA+TGG + tig0027382:27485-27504 Msa1433640:intron 25.0%
!! CATTTTAGATCAGTATAGTT+CGG + tig0027382:28773-28792 Msa1433640:intron 25.0%
! TACCCAAAATAATTAAAAGG+AGG - tig0027382:28848-28867 None:intergenic 25.0%
!!! TTTTTCAGTTGAGAAGTTTA+TGG + tig0027382:28896-28915 Msa1433640:intron 25.0%
! ATATTTGAGAAATTGTGCTA+AGG + tig0027382:28948-28967 Msa1433640:intron 25.0%
! TATTTGAGAAATTGTGCTAA+GGG + tig0027382:28949-28968 Msa1433640:intron 25.0%
! AAAGCTACATAAAAGACTTA+GGG - tig0027382:29168-29187 None:intergenic 25.0%
! AAAAGCTACATAAAAGACTT+AGG - tig0027382:29169-29188 None:intergenic 25.0%
!! TAAGTCTTTTATGTAGCTTT+TGG + tig0027382:29168-29187 Msa1433640:intron 25.0%
! TGTTAAACTAGACAACAATT+TGG + tig0027382:29662-29681 Msa1433640:intron 25.0%
! AAAAAATGCTCATTGAAAAG+GGG - tig0027382:29849-29868 None:intergenic 25.0%
! GAAAAAAATGCTCATTGAAA+AGG - tig0027382:29851-29870 None:intergenic 25.0%
!!! GATTTCTAGTTTCTATTAGA+TGG + tig0027382:29896-29915 Msa1433640:intron 25.0%
! AGATGGTAATATATAAAAGG+GGG + tig0027382:29913-29932 Msa1433640:intron 25.0%
!! TTAGTTGATACAACAAATAC+TGG - tig0027382:30397-30416 None:intergenic 25.0%
!!! GTATTTGTTGTATCAACTAA+AGG + tig0027382:30397-30416 Msa1433640:CDS 25.0%
! TACATAAATATGTATACCCT+TGG - tig0027382:30672-30691 None:intergenic 25.0%
! TTAGCTATGAAGATTCATAT+GGG - tig0027382:30854-30873 None:intergenic 25.0%
! AAAGATACTGAATAATGGTA+GGG - tig0027382:30926-30945 None:intergenic 25.0%
!! TTAGAAAAACGGTGTTGTTT+AGG + tig0027382:26894-26913 Msa1433640:five_prime_UTR 30.0%
GTTAATAAAAAACCACGGAA+TGG - tig0027382:27022-27041 None:intergenic 30.0%
AGAGACATTGGAATAATCAA+GGG - tig0027382:27231-27250 None:intergenic 30.0%
AAGAGACATTGGAATAATCA+AGG - tig0027382:27232-27251 None:intergenic 30.0%
TAGTTATTCTCACCTTCAAT+GGG - tig0027382:27271-27290 None:intergenic 30.0%
ATAGTTATTCTCACCTTCAA+TGG - tig0027382:27272-27291 None:intergenic 30.0%
AAGGAAGAAGATCATAAACA+TGG + tig0027382:27567-27586 Msa1433640:intron 30.0%
GAAGAAAAAAAAATCGGATC+TGG - tig0027382:28314-28333 None:intergenic 30.0%
TTATTATGAGGAACATGTGA+AGG + tig0027382:28431-28450 Msa1433640:CDS 30.0%
!! ATCATCAAGATATTTTGGGA+AGG - tig0027382:28468-28487 None:intergenic 30.0%
! TGGCATCATCAAGATATTTT+GGG - tig0027382:28472-28491 None:intergenic 30.0%
! TTGGCATCATCAAGATATTT+TGG - tig0027382:28473-28492 None:intergenic 30.0%
TCAGCATTGTAATCAATCTT+TGG - tig0027382:28621-28640 None:intergenic 30.0%
!!! TTATTTTGGGTAGTTTCTCT+TGG + tig0027382:28856-28875 Msa1433640:intron 30.0%
CTAAAATAAGCCAATCCAAA+CGG + tig0027382:29141-29160 Msa1433640:intron 30.0%
AATACAATTCCTAATGTGCT+TGG + tig0027382:29199-29218 Msa1433640:intron 30.0%
! TTTATTGATTGGTGGGTATT+AGG + tig0027382:29251-29270 Msa1433640:intron 30.0%
GATCTACAGTTAACTATTGT+TGG + tig0027382:29325-29344 Msa1433640:intron 30.0%
TGATTTGAAAACTATACTGG+TGG - tig0027382:29407-29426 None:intergenic 30.0%
CCATGATTTGAAAACTATAC+TGG - tig0027382:29410-29429 None:intergenic 30.0%
! CCAGTATAGTTTTCAAATCA+TGG + tig0027382:29407-29426 Msa1433640:intron 30.0%
TGCAAAATTCCATCAGATAA+CGG - tig0027382:29477-29496 None:intergenic 30.0%
! TCCAATGATTGTCTTTTGTT+TGG + tig0027382:29549-29568 Msa1433640:intron 30.0%
!! CCAATGATTGTCTTTTGTTT+GGG + tig0027382:29550-29569 Msa1433640:intron 30.0%
GTGACATATTCAACTAATCA+TGG - tig0027382:29601-29620 None:intergenic 30.0%
!! GACAACAATTTGGTGATTTT+TGG + tig0027382:29672-29691 Msa1433640:intron 30.0%
!! AACAATTTGGTGATTTTTGG+TGG + tig0027382:29675-29694 Msa1433640:CDS 30.0%
AAAACAAGTTATCACCTATC+AGG - tig0027382:30065-30084 None:intergenic 30.0%
! CAATTCTTGCAACAGAATTT+TGG + tig0027382:30550-30569 Msa1433640:CDS 30.0%
GGTTGAAGAAAGATAGTAAT+GGG + tig0027382:30645-30664 Msa1433640:three_prime_UTR 30.0%
TAACTGTTTCCACAAATTAG+AGG + tig0027382:30799-30818 Msa1433640:three_prime_UTR 30.0%
TAGCTATGAAGATTCATATG+GGG - tig0027382:30853-30872 None:intergenic 30.0%
GTTAGCTATGAAGATTCATA+TGG - tig0027382:30855-30874 None:intergenic 30.0%
!!! ACATTTTAAAATACCCTGTG+TGG + tig0027382:30887-30906 Msa1433640:three_prime_UTR 30.0%
!!! CATTTTAAAATACCCTGTGT+GGG + tig0027382:30888-30907 Msa1433640:three_prime_UTR 30.0%
AAGATACTGAATAATGGTAG+GGG - tig0027382:30925-30944 None:intergenic 30.0%
CAAAGATACTGAATAATGGT+AGG - tig0027382:30927-30946 None:intergenic 30.0%
CTATCACGAATTTAGCTACA+TGG - tig0027382:26924-26943 None:intergenic 35.0%
TGAAATTCTGCATCCTCTAA+TGG + tig0027382:27082-27101 Msa1433640:exon 35.0%
GTGTAAAGGTTAGAACTTGA+AGG - tig0027382:27137-27156 None:intergenic 35.0%
!! GTTTGCGAAATTTGGTGTAA+AGG - tig0027382:27151-27170 None:intergenic 35.0%
TAAACAGAGTGAGAGAGAAA+GGG - tig0027382:27173-27192 None:intergenic 35.0%
ATAAACAGAGTGAGAGAGAA+AGG - tig0027382:27174-27193 None:intergenic 35.0%
TTCTTAAACCCTTGAAGATC+CGG + tig0027382:27195-27214 Msa1433640:CDS 35.0%
AGTTATTCTCACCTTCAATG+GGG - tig0027382:27270-27289 None:intergenic 35.0%
GCTTTACACAAACCTCAAAT+GGG - tig0027382:27426-27445 None:intergenic 35.0%
AGCTTTACACAAACCTCAAA+TGG - tig0027382:27427-27446 None:intergenic 35.0%
!! TGTGTAAAGCTTGTTGAATC+TGG + tig0027382:27436-27455 Msa1433640:intron 35.0%
! AAGTCTGAAGTGAGTAATGA+CGG + tig0027382:27466-27485 Msa1433640:intron 35.0%
! TTCCTTTTGATCCATGGATT+CGG - tig0027382:27553-27572 None:intergenic 35.0%
! ATCTTCTTCCTTTTGATCCA+TGG - tig0027382:27559-27578 None:intergenic 35.0%
GAACGTGAAAAACGAGAAAT+CGG + tig0027382:27662-27681 Msa1433640:intron 35.0%
ATCATAACAACAGAGAATCG+TGG + tig0027382:27729-27748 Msa1433640:intron 35.0%
! GATTAGGCCAACAAATTTTC+TGG + tig0027382:27764-27783 Msa1433640:intron 35.0%
!! CCAACAAATTTTCTGGTGTA+CGG + tig0027382:27771-27790 Msa1433640:intron 35.0%
! CCTAAAGTGTTAAACGCAAA+TGG - tig0027382:27968-27987 None:intergenic 35.0%
CCATTTGCGTTTAACACTTT+AGG + tig0027382:27965-27984 Msa1433640:intron 35.0%
ATAACAATGTTGTGTCTCCT+AGG + tig0027382:28041-28060 Msa1433640:intron 35.0%
TGCCATATAGAAAGAGTTAG+CGG + tig0027382:28096-28115 Msa1433640:intron 35.0%
AATCCCTATCTAACTCCTAA+AGG + tig0027382:28183-28202 Msa1433640:intron 35.0%
! ACTCCTTTAGGAGTTAGATA+GGG - tig0027382:28189-28208 None:intergenic 35.0%
! AACTCCTTTAGGAGTTAGAT+AGG - tig0027382:28190-28209 None:intergenic 35.0%
!!! TTTCTTCCATATTTTGGCTC+AGG + tig0027382:28327-28346 Msa1433640:intron 35.0%
ATTATGCCTGAGCCAAAATA+TGG - tig0027382:28336-28355 None:intergenic 35.0%
TGACGTCTTGGAAAAATTTC+TGG + tig0027382:28638-28657 Msa1433640:CDS 35.0%
GATTTCATCAATTCACCCTA+TGG + tig0027382:28663-28682 Msa1433640:CDS 35.0%
TGTACTTGTTTCATTGTTGC+TGG + tig0027382:29288-29307 Msa1433640:intron 35.0%
ATACTGGTGGTTCATTGAAT+CGG - tig0027382:29394-29413 None:intergenic 35.0%
!! ATCAGATAACGGAAGAAACA+TGG - tig0027382:29466-29485 None:intergenic 35.0%
ATGTTTCTTCCGTTATCTGA+TGG + tig0027382:29465-29484 Msa1433640:intron 35.0%
CCCAAACAAAAGACAATCAT+TGG - tig0027382:29553-29572 None:intergenic 35.0%
GTCTTTGTGACTAACATTGT+TGG + tig0027382:29639-29658 Msa1433640:intron 35.0%
!!! AATTTGGTGATTTTTGGTGG+AGG + tig0027382:29678-29697 Msa1433640:CDS 35.0%
!!! ATTTGGTGATTTTTGGTGGA+GGG + tig0027382:29679-29698 Msa1433640:CDS 35.0%
TCAATGCTACAGTGATCAAT+TGG - tig0027382:29878-29897 None:intergenic 35.0%
CTTGTTGACATCTAAATGCT+CGG + tig0027382:29977-29996 Msa1433640:intron 35.0%
TATGTCACAAACAACCTGAT+AGG + tig0027382:30048-30067 Msa1433640:intron 35.0%
! TATGCATTGACAAAACGACA+AGG + tig0027382:30271-30290 Msa1433640:CDS 35.0%
TGCACAGGCAATAATATTAG+TGG + tig0027382:30623-30642 Msa1433640:three_prime_UTR 35.0%
GCACAGGCAATAATATTAGT+GGG + tig0027382:30624-30643 Msa1433640:three_prime_UTR 35.0%
GGGTTGAAGAAAGATAGTAA+TGG + tig0027382:30644-30663 Msa1433640:three_prime_UTR 35.0%
! AAAGATAGTAATGGGACCAA+GGG + tig0027382:30653-30672 Msa1433640:three_prime_UTR 35.0%
GGAAACAGTTATCTTTCACT+GGG - tig0027382:30790-30809 None:intergenic 35.0%
TGGAAACAGTTATCTTTCAC+TGG - tig0027382:30791-30810 None:intergenic 35.0%
ATAGCAGAAAATACTGACCG+TGG - tig0027382:26995-27014 None:intergenic 40.0%
AGGTTAGAACTTGAAGGTGA+AGG - tig0027382:27131-27150 None:intergenic 40.0%
GAGAAAGGGTTTGCGAAATT+TGG - tig0027382:27159-27178 None:intergenic 40.0%
TCTTAAACCCTTGAAGATCC+GGG + tig0027382:27196-27215 Msa1433640:CDS 40.0%
TTTGTCACTGGAAGAGACAT+TGG - tig0027382:27243-27262 None:intergenic 40.0%
TGACAAATCTTCCCCATTGA+AGG + tig0027382:27256-27275 Msa1433640:CDS 40.0%
TTCCGAATCCATGGATCAAA+AGG + tig0027382:27548-27567 Msa1433640:intron 40.0%
TTGATGCTCGTGCATCAAAT+TGG + tig0027382:27693-27712 Msa1433640:intron 40.0%
GCATCAAATTGGTGAATGCA+CGG + tig0027382:27704-27723 Msa1433640:intron 40.0%
! GTGGTCCTTTGAGAATGATT+AGG + tig0027382:27748-27767 Msa1433640:intron 40.0%
! GTTGGCCTAATCATTCTCAA+AGG - tig0027382:27756-27775 None:intergenic 40.0%
CCGTACACCAGAAAATTTGT+TGG - tig0027382:27774-27793 None:intergenic 40.0%
AGGAAGGAAACATGCATGTT+TGG + tig0027382:27800-27819 Msa1433640:intron 40.0%
! TTTGCTTGAAGCAGCTTTGA+GGG - tig0027382:27889-27908 None:intergenic 40.0%
! TTTAGGTTTCCTAGCACTAG+AGG + tig0027382:27982-28001 Msa1433640:intron 40.0%
AAAACGACATCCATAGACCT+AGG - tig0027382:28061-28080 None:intergenic 40.0%
CATATAGAAAGAGTTAGCGG+CGG + tig0027382:28099-28118 Msa1433640:intron 40.0%
! TTTTCCATCAGACTAGCAAC+TGG + tig0027382:28376-28395 Msa1433640:intron 40.0%
AACAGTGCTCACATCAGAAA+TGG - tig0027382:28496-28515 None:intergenic 40.0%
GAAGACATTGCTCAACGTAA+TGG + tig0027382:28537-28556 Msa1433640:CDS 40.0%
ACCGCACTACTATTGTTGAT+TGG + tig0027382:28571-28590 Msa1433640:CDS 40.0%
GCCAATCAACAATAGTAGTG+CGG - tig0027382:28575-28594 None:intergenic 40.0%
! ACTACTATTGTTGATTGGCC+TGG + tig0027382:28576-28595 Msa1433640:CDS 40.0%
TGATTACAATGCTGACGTCT+TGG + tig0027382:28626-28645 Msa1433640:CDS 40.0%
!! GGTTGTTTTACTGGACCATA+GGG - tig0027382:28681-28700 None:intergenic 40.0%
!! TGGTTGTTTTACTGGACCAT+AGG - tig0027382:28682-28701 None:intergenic 40.0%
TATGGTCCAGTAAAACAACC+AGG + tig0027382:28681-28700 Msa1433640:CDS 40.0%
!! TCAGTACCTGGTTGTTTTAC+TGG - tig0027382:28690-28709 None:intergenic 40.0%
AATTGTGCTAAGGGTCTGTT+TGG + tig0027382:28958-28977 Msa1433640:intron 40.0%
TAAAAGACTTAGGGTCCGTT+TGG - tig0027382:29159-29178 None:intergenic 40.0%
AATTCCTAATGTGCTTGGCA+GGG + tig0027382:29204-29223 Msa1433640:intron 40.0%
! ATTGGTGGGTATTAGGAATC+TGG + tig0027382:29258-29277 Msa1433640:intron 40.0%
GTTTCATTGTTGCTGGTACT+TGG + tig0027382:29295-29314 Msa1433640:intron 40.0%
CATTGAATCGGTGAAAACAG+TGG - tig0027382:29382-29401 None:intergenic 40.0%
ATGACCTCTCCTGTAAATTG+TGG + tig0027382:29503-29522 Msa1433640:intron 40.0%
TGACCTCTCCTGTAAATTGT+GGG + tig0027382:29504-29523 Msa1433640:intron 40.0%
ACTTTGACCCCACAATTTAC+AGG - tig0027382:29515-29534 None:intergenic 40.0%
TTGTTTCCATGCTGGAATCT+CGG - tig0027382:29812-29831 None:intergenic 40.0%
! ATAGTACCTTGTTTCCATGC+TGG - tig0027382:29820-29839 None:intergenic 40.0%
CCATACCTGTCAAGTTCATA+GGG - tig0027382:30103-30122 None:intergenic 40.0%
ACCATACCTGTCAAGTTCAT+AGG - tig0027382:30104-30123 None:intergenic 40.0%
!! TCTTCTAAGAGGCACCTTAA+AGG + tig0027382:30123-30142 Msa1433640:CDS 40.0%
! CATGTGATTTGTACTGCGAT+TGG - tig0027382:30204-30223 None:intergenic 40.0%
TGCATATCTGCTTTCGACAA+TGG - tig0027382:30257-30276 None:intergenic 40.0%
CCAAATCTGCAAAGAGTTGA+AGG - tig0027382:30363-30382 None:intergenic 40.0%
CCTTCAACTCTTTGCAGATT+TGG + tig0027382:30360-30379 Msa1433640:CDS 40.0%
TCAACTCTTTGCAGATTTGG+AGG + tig0027382:30363-30382 Msa1433640:CDS 40.0%
CAACTCTTTGCAGATTTGGA+GGG + tig0027382:30364-30383 Msa1433640:CDS 40.0%
CAACTAAAGGGTCTCCTAAA+AGG + tig0027382:30410-30429 Msa1433640:CDS 40.0%
! ATCTCAGCCTTAGACCTTTT+AGG - tig0027382:30427-30446 None:intergenic 40.0%
! TAAAAGGTCTAAGGCTGAGA+TGG + tig0027382:30426-30445 Msa1433640:CDS 40.0%
TAAAGGAGTGAGCAAGTTTG+TGG + tig0027382:30465-30484 Msa1433640:CDS 40.0%
! GTGTCAACTTTTAAGCGACA+GGG - tig0027382:30576-30595 None:intergenic 40.0%
! TGTGTCAACTTTTAAGCGAC+AGG - tig0027382:30577-30596 None:intergenic 40.0%
GTCGCTTAAAAGTTGACACA+TGG + tig0027382:30577-30596 Msa1433640:exon 40.0%
CACATGGTACTTGTGTATGT+TGG + tig0027382:30593-30612 Msa1433640:three_prime_UTR 40.0%
! GAAAGATAGTAATGGGACCA+AGG + tig0027382:30652-30671 Msa1433640:three_prime_UTR 40.0%
TTGCCAAAATCATTTCCCAC+TGG + tig0027382:30738-30757 Msa1433640:three_prime_UTR 40.0%
! AGTCCAGTGGGAAATGATTT+TGG - tig0027382:30744-30763 None:intergenic 40.0%
AAGTCAAACATCAGTCCAGT+GGG - tig0027382:30756-30775 None:intergenic 40.0%
AACATGTCGCCTCTAATTTG+TGG - tig0027382:30811-30830 None:intergenic 40.0%
TCTGCTATAGTTCCATTCCG+TGG + tig0027382:27007-27026 Msa1433640:five_prime_UTR 45.0%
AATCAAGGGTAGTTGAAGCC+CGG - tig0027382:27217-27236 None:intergenic 45.0%
CAATGGGGAAGATTTGTCAC+TGG - tig0027382:27255-27274 None:intergenic 45.0%
CAAAGTTGGATGCCCATTTG+AGG + tig0027382:27411-27430 Msa1433640:intron 45.0%
TGTGTTGTGTTCCGAATCCA+TGG + tig0027382:27539-27558 Msa1433640:intron 45.0%
! TAGAGAGCATGTTGATGCTC+AGG + tig0027382:27596-27615 Msa1433640:intron 45.0%
TTGATGCACGAGCATCAACA+TGG - tig0027382:27691-27710 None:intergenic 45.0%
! TTTCTGGTGTACGGATGAGT+AGG + tig0027382:27780-27799 Msa1433640:intron 45.0%
TGCATGTTTGGACTTGACTG+AGG + tig0027382:27812-27831 Msa1433640:intron 45.0%
CTTTGCTTGAAGCAGCTTTG+AGG - tig0027382:27890-27909 None:intergenic 45.0%
CAAAGCTGCTTCAAGCAAAG+TGG + tig0027382:27890-27909 Msa1433640:intron 45.0%
GATTCACAACCTCTAGTGCT+AGG - tig0027382:27994-28013 None:intergenic 45.0%
TGTTGTGTCTCCTAGGTCTA+TGG + tig0027382:28048-28067 Msa1433640:intron 45.0%
CGCCGCTAACTCTTTCTATA+TGG - tig0027382:28101-28120 None:intergenic 45.0%
GAGTTAGTCGCAACTCCTTT+AGG - tig0027382:28201-28220 None:intergenic 45.0%
CAACTGGCAGTGGAAATTCA+AGG + tig0027382:28392-28411 Msa1433640:CDS 45.0%
GGAACATGTGAAGGAGAGTT+CGG + tig0027382:28440-28459 Msa1433640:CDS 45.0%
GTGCTCACATCAGAAATGGT+TGG - tig0027382:28492-28511 None:intergenic 45.0%
! TTCTGATGTGAGCACTGTTG+AGG + tig0027382:28497-28516 Msa1433640:CDS 45.0%
!! ATTGTTGATTGGCCTGGTCT+AGG + tig0027382:28582-28601 Msa1433640:CDS 45.0%
CGATCAGAATAACCTAGACC+AGG - tig0027382:28597-28616 None:intergenic 45.0%
!! CAACCAGGTACTGATAGTAG+TGG + tig0027382:28696-28715 Msa1433640:intron 45.0%
CAATTCCTAATGTGCTTGGC+AGG + tig0027382:29203-29222 Msa1433640:intron 45.0%
AAAACCCTGCCAAGCACATT+AGG - tig0027382:29211-29230 None:intergenic 45.0%
! AATGTGCTTGGCAGGGTTTT+AGG + tig0027382:29211-29230 Msa1433640:intron 45.0%
! ATGTGCTTGGCAGGGTTTTA+GGG + tig0027382:29212-29231 Msa1433640:intron 45.0%
! AACAGTGGTTCACGGATTAC+TGG - tig0027382:29367-29386 None:intergenic 45.0%
TCGGTGAAAACAGTGGTTCA+CGG - tig0027382:29375-29394 None:intergenic 45.0%
GACCTCTCCTGTAAATTGTG+GGG + tig0027382:29505-29524 Msa1433640:intron 45.0%
GCAACAGCAGCTATAGCTTT+GGG - tig0027382:29753-29772 None:intergenic 45.0%
TGCAACAGCAGCTATAGCTT+TGG - tig0027382:29754-29773 None:intergenic 45.0%
TCGGCCAAATACGATAGGAA+GGG - tig0027382:29793-29812 None:intergenic 45.0%
GAATCTCGGCCAAATACGAT+AGG - tig0027382:29798-29817 None:intergenic 45.0%
GAGATTCCAGCATGGAAACA+AGG + tig0027382:29811-29830 Msa1433640:CDS 45.0%
GCTACAGTGATCAATTGGCA+AGG - tig0027382:29873-29892 None:intergenic 45.0%
CCTGTCAAGTTCATAGGGAA+GGG - tig0027382:30098-30117 None:intergenic 45.0%
ACCTGTCAAGTTCATAGGGA+AGG - tig0027382:30099-30118 None:intergenic 45.0%
CCCTATGAACTTGACAGGTA+TGG + tig0027382:30100-30119 Msa1433640:intron 45.0%
GACAGGTATGGTCTTCTAAG+AGG + tig0027382:30112-30131 Msa1433640:intron 45.0%
!! TGGTGTCACGTTATCAGGAT+TGG - tig0027382:30233-30252 None:intergenic 45.0%
TATCTGCTTTCGACAATGGC+TGG - tig0027382:30253-30272 None:intergenic 45.0%
AGAGTTGAAGGAACTCCTCA+CGG - tig0027382:30351-30370 None:intergenic 45.0%
AGGGTCTCCTAAAAGGTCTA+AGG + tig0027382:30417-30436 Msa1433640:CDS 45.0%
GCTGAGATGGAAGCTCTTAA+CGG + tig0027382:30439-30458 Msa1433640:CDS 45.0%
GAAGCTCTTAACGGAGCTAA+AGG + tig0027382:30448-30467 Msa1433640:CDS 45.0%
AAAGCAGGATACTCCTCTTG+TGG - tig0027382:30511-30530 None:intergenic 45.0%
! TATGTTGGTGAAGCTTGCAC+AGG + tig0027382:30608-30627 Msa1433640:three_prime_UTR 45.0%
CAAGTCAAACATCAGTCCAG+TGG - tig0027382:30757-30776 None:intergenic 45.0%
!! TAAATATAAGATTATTTAAT+TGG - tig0027382:28230-28249 None:intergenic 5.0%
!! TTTAATAAATATTTATTATG+AGG + tig0027382:28419-28438 Msa1433640:CDS 5.0%
!! GTTGCAGAGAGTGCCATTAG+AGG - tig0027382:27098-27117 None:intergenic 50.0%
GTTGAAGCCCGGATCTTCAA+GGG - tig0027382:27206-27225 None:intergenic 50.0%
AGTTGAAGCCCGGATCTTCA+AGG - tig0027382:27207-27226 None:intergenic 50.0%
TGGTGTACGGATGAGTAGGA+AGG + tig0027382:27784-27803 Msa1433640:intron 50.0%
ACTGAGGTTTCCCCACTTGT+GGG + tig0027382:27828-27847 Msa1433640:intron 50.0%
GTCTCTCAATCCCACAAGTG+GGG - tig0027382:27841-27860 None:intergenic 50.0%
CGTCTCTCAATCCCACAAGT+GGG - tig0027382:27842-27861 None:intergenic 50.0%
ACTTGTGGGATTGAGAGACG+CGG + tig0027382:27842-27861 Msa1433640:intron 50.0%
AGAGACGCGGCTTTCACTTT+GGG + tig0027382:27855-27874 Msa1433640:intron 50.0%
! ACTGCCAGTTGCTAGTCTGA+TGG - tig0027382:28383-28402 None:intergenic 50.0%
ATCAGACTAGCAACTGGCAG+TGG + tig0027382:28382-28401 Msa1433640:intron 50.0%
! ATGTGAGCACTGTTGAGGAG+TGG + tig0027382:28502-28521 Msa1433640:CDS 50.0%
CCTCCACTACTATCAGTACC+TGG - tig0027382:28702-28721 None:intergenic 50.0%
!! CCAGGTACTGATAGTAGTGG+AGG + tig0027382:28699-28718 Msa1433640:intron 50.0%
GACTTAGGGTCCGTTTGGAT+TGG - tig0027382:29154-29173 None:intergenic 50.0%
!!! TGGCAGGGTTTTAGGGCTTT+TGG + tig0027382:29219-29238 Msa1433640:intron 50.0%
GACCCCACAATTTACAGGAG+AGG - tig0027382:29510-29529 None:intergenic 50.0%
AGTAGTCCGTGCTGCGAAAA+AGG + tig0027382:29716-29735 Msa1433640:CDS 50.0%
GTAGTCCGTGCTGCGAAAAA+GGG + tig0027382:29717-29736 Msa1433640:CDS 50.0%
GGTCCCCTTCCTATCGTATT+TGG + tig0027382:29786-29805 Msa1433640:CDS 50.0%
CGGCCAAATACGATAGGAAG+GGG - tig0027382:29792-29811 None:intergenic 50.0%
CTCGGCCAAATACGATAGGA+AGG - tig0027382:29794-29813 None:intergenic 50.0%
ATTTGGCCGAGATTCCAGCA+TGG + tig0027382:29803-29822 Msa1433640:CDS 50.0%
CCCTTCCCTATGAACTTGAC+AGG + tig0027382:30095-30114 Msa1433640:intron 50.0%
!! ATGGCTGGTGTCACGTTATC+AGG - tig0027382:30238-30257 None:intergenic 50.0%
ACTCCTCACGGGATGTTACA+GGG - tig0027382:30339-30358 None:intergenic 50.0%
AACTCCTCACGGGATGTTAC+AGG - tig0027382:30340-30359 None:intergenic 50.0%
GAGTTGAAGGAACTCCTCAC+GGG - tig0027382:30350-30369 None:intergenic 50.0%
!! AGCAAGTTTGTGGAAGTGCC+TGG + tig0027382:30475-30494 Msa1433640:CDS 50.0%
!! TCTTGTGGAAGAAGAGCACC+AGG - tig0027382:30496-30515 None:intergenic 50.0%
TGGTGCTCTTCTTCCACAAG+AGG + tig0027382:30495-30514 Msa1433640:CDS 50.0%
! GGAGTATCCTGCTTTAGTCG+CGG + tig0027382:30516-30535 Msa1433640:CDS 50.0%
GAATAATGGTAGGGGCCATC+AGG - tig0027382:30917-30936 None:intergenic 50.0%
GACTGAGGTTTCCCCACTTG+TGG + tig0027382:27827-27846 Msa1433640:intron 55.0%
GCGTCTCTCAATCCCACAAG+TGG - tig0027382:27843-27862 None:intergenic 55.0%
GAGAGACGCGGCTTTCACTT+TGG + tig0027382:27854-27873 Msa1433640:intron 55.0%
!! CCAGACCCTTTTTCGCAGCA+CGG - tig0027382:29725-29744 None:intergenic 55.0%
TAGCTGCTGTTGCACCCACT+TGG + tig0027382:29760-29779 Msa1433640:CDS 55.0%
!! ACCTTAAAGGCGCCTGCAGT+TGG + tig0027382:30136-30155 Msa1433640:CDS 55.0%
!! CCTTAAAGGCGCCTGCAGTT+GGG + tig0027382:30137-30156 Msa1433640:CDS 55.0%
TACACCATCCACCCAACTGC+AGG - tig0027382:30151-30170 None:intergenic 55.0%
! AGGAGCACGTTACTTACCCG+CGG + tig0027382:30291-30310 Msa1433640:CDS 55.0%
TTACCCGCGGCTTTCTTGAC+TGG + tig0027382:30304-30323 Msa1433640:CDS 55.0%
AGTCCAGTCAAGAAAGCCGC+GGG - tig0027382:30310-30329 None:intergenic 55.0%
GAGTCCAGTCAAGAAAGCCG+CGG - tig0027382:30311-30330 None:intergenic 55.0%
CACGGGATGTTACAGGGTCT+AGG - tig0027382:30333-30352 None:intergenic 55.0%
AGACCCTGTAACATCCCGTG+AGG + tig0027382:30333-30352 Msa1433640:CDS 55.0%
AGCTCTTCCGCGACTAAAGC+AGG - tig0027382:30526-30545 None:intergenic 55.0%
ACCCTGTGTGGGTATCCTGA+TGG + tig0027382:30899-30918 Msa1433640:three_prime_UTR 55.0%
GCCATCAGGATACCCACACA+GGG - tig0027382:30903-30922 None:intergenic 55.0%
CCGTGCTGCGAAAAAGGGTC+TGG + tig0027382:29722-29741 Msa1433640:CDS 60.0%
GCTGTTGCACCCACTTGGTC+TGG + tig0027382:29765-29784 Msa1433640:CDS 60.0%
GGAAGGGGACCAGACCAAGT+GGG - tig0027382:29777-29796 None:intergenic 60.0%
AGGAAGGGGACCAGACCAAG+TGG - tig0027382:29778-29797 None:intergenic 60.0%
CCCAACTGCAGGCGCCTTTA+AGG - tig0027382:30140-30159 None:intergenic 60.0%
!! TAAAGGCGCCTGCAGTTGGG+TGG + tig0027382:30140-30159 Msa1433640:CDS 60.0%
GGCCATCAGGATACCCACAC+AGG - tig0027382:30904-30923 None:intergenic 60.0%
GGCGCCTGCAGTTGGGTGGA+TGG + tig0027382:30144-30163 Msa1433640:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0027382 gene 26881 30946 26881 ID=Msa1433640;Name=Msa1433640
tig0027382 mRNA 26881 30946 26881 ID=Msa1433640-mRNA-1;Parent=Msa1433640;Name=Msa1433640-mRNA-1;_AED=0.01;_eAED=0.01;_QI=220|1|1|1|1|1|4|361|373
tig0027382 exon 26881 27277 26881 ID=Msa1433640-mRNA-1:exon:8709;Parent=Msa1433640-mRNA-1
tig0027382 exon 28387 28702 28387 ID=Msa1433640-mRNA-1:exon:8710;Parent=Msa1433640-mRNA-1
tig0027382 exon 29673 29832 29673 ID=Msa1433640-mRNA-1:exon:8711;Parent=Msa1433640-mRNA-1
tig0027382 exon 30117 30946 30117 ID=Msa1433640-mRNA-1:exon:8712;Parent=Msa1433640-mRNA-1
tig0027382 five_prime_UTR 26881 27100 26881 ID=Msa1433640-mRNA-1:five_prime_utr;Parent=Msa1433640-mRNA-1
tig0027382 CDS 27101 27277 27101 ID=Msa1433640-mRNA-1:cds;Parent=Msa1433640-mRNA-1
tig0027382 CDS 28387 28702 28387 ID=Msa1433640-mRNA-1:cds;Parent=Msa1433640-mRNA-1
tig0027382 CDS 29673 29832 29673 ID=Msa1433640-mRNA-1:cds;Parent=Msa1433640-mRNA-1
tig0027382 CDS 30117 30585 30117 ID=Msa1433640-mRNA-1:cds;Parent=Msa1433640-mRNA-1
tig0027382 three_prime_UTR 30586 30946 30586 ID=Msa1433640-mRNA-1:three_prime_utr;Parent=Msa1433640-mRNA-1
Gene Sequence

>Msa1433640

ATGGCACTCTCTGCAACATTTATCACTCCTTCACCTTCAAGTTCTAACCTTTACACCAAATTTCGCAAACCCTTTCTCTCTCACTCTGTTTATCTTCTTAAACCCTTGAAGATCCGGGCTTCAACTACCCTTGATTATTCCAATGTCTCTTCCAGTGACAAATCTTCCCCATTGAAGACTAGCAACTGGCAGTGGAAATTCAAGGACAATTTAATAAATATTTATTATGAGGAACATGTGAAGGAGAGTTCGGAGCCTTCCCAAAATATCTTGATGATGCCAACCATTTCTGATGTGAGCACTGTTGAGGAGTGGAGATTAGTTGCTGAAGACATTGCTCAACGTAATGGCAGTGTCAATTACCGCACTACTATTGTTGATTGGCCTGGTCTAGGTTATTCTGATCGACCAAAGATTGATTACAATGCTGACGTCTTGGAAAAATTTCTGGTTGATTTCATCAATTCACCCTATGGTCCAGTAAAACAACCAGACAACAATTTGGTGATTTTTGGTGGAGGGCATGCTGCTTCAATAGTAGTCCGTGCTGCGAAAAAGGGTCTGGTGAAGCCCAAAGCTATAGCTGCTGTTGCACCCACTTGGTCTGGTCCCCTTCCTATCGTATTTGGCCGAGATTCCAGCATGGAAACAAGGTATGGTCTTCTAAGAGGCACCTTAAAGGCGCCTGCAGTTGGGTGGATGGTGTATAACATGCTTGTGAGCAATGAGAATGCAATCCAATCGCAGTACAAATCACATGTATATGCCAATCCTGATAACGTGACACCAGCCATTGTCGAAAGCAGATATGCATTGACAAAACGACAAGGAGCACGTTACTTACCCGCGGCTTTCTTGACTGGACTCCTAGACCCTGTAACATCCCGTGAGGAGTTCCTTCAACTCTTTGCAGATTTGGAGGGAAAAATACCAGTATTTGTTGTATCAACTAAAGGGTCTCCTAAAAGGTCTAAGGCTGAGATGGAAGCTCTTAACGGAGCTAAAGGAGTGAGCAAGTTTGTGGAAGTGCCTGGTGCTCTTCTTCCACAAGAGGAGTATCCTGCTTTAGTCGCGGAAGAGCTTTATCAATTCTTGCAACAGAATTTTGGCCCTGTCGCTTAA
Protein sequence

>Msa1433640

MALSATFITPSPSSSNLYTKFRKPFLSHSVYLLKPLKIRASTTLDYSNVSSSDKSSPLKTSNWQWKFKDNLINIYYEEHVKESSEPSQNILMMPTISDVSTVEEWRLVAEDIAQRNGSVNYRTTIVDWPGLGYSDRPKIDYNADVLEKFLVDFINSPYGPVKQPDNNLVIFGGGHAASIVVRAAKKGLVKPKAIAAVAPTWSGPLPIVFGRDSSMETRYGLLRGTLKAPAVGWMVYNMLVSNENAIQSQYKSHVYANPDNVTPAIVESRYALTKRQGARYLPAAFLTGLLDPVTSREEFLQLFADLEGKIPVFVVSTKGSPKRSKAEMEALNGAKGVSKFVEVPGALLPQEEYPALVAEELYQFLQQNFGPVA*