Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435180 | XP_003614009.2 | 90.385 | 312 | 29 | 1 | 1 | 311 | 1 | 312 | 4.63e-179 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435180 | G7JXW7 | 90.385 | 312 | 29 | 1 | 1 | 311 | 1 | 312 | 2.21e-179 | 507 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0846760 | Msa1435180 | 0.885993 | 5.031731e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435180 | MtrunA17_Chr5g0418651 | 90.385 | 312 | 29 | 1 | 1 | 311 | 1 | 312 | 0.0 | 507 |
| Msa1435180 | MtrunA17_Chr4g0042991 | 41.985 | 393 | 140 | 10 | 1 | 311 | 1 | 387 | 2.83e-56 | 186 |
| Msa1435180 | MtrunA17_Chr5g0418641 | 84.000 | 75 | 11 | 1 | 8 | 81 | 1 | 75 | 2.30e-32 | 115 |
| Msa1435180 | MtrunA17_Chr3g0086051 | 35.455 | 110 | 71 | 0 | 202 | 311 | 151 | 260 | 2.20e-19 | 85.9 |
| Msa1435180 | MtrunA17_Chr5g0418631 | 64.912 | 57 | 19 | 1 | 246 | 301 | 36 | 92 | 1.44e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1435180 | AT1G13920.1 | 46.903 | 113 | 59 | 1 | 200 | 311 | 233 | 345 | 8.68e-25 | 102 |
| Msa1435180 | AT1G13920.4 | 46.903 | 113 | 59 | 1 | 200 | 311 | 266 | 378 | 1.01e-24 | 103 |
| Msa1435180 | AT5G61280.2 | 35.652 | 115 | 74 | 0 | 197 | 311 | 123 | 237 | 5.55e-20 | 87.4 |
| Msa1435180 | AT5G61280.1 | 35.652 | 115 | 74 | 0 | 197 | 311 | 146 | 260 | 9.47e-20 | 87.4 |
| Msa1435180 | AT1G69325.1 | 44.444 | 99 | 55 | 0 | 207 | 305 | 18 | 116 | 1.32e-13 | 67.0 |
Find 87 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGTAGAATGGAGAATTTA+TGG | 0.262483 | tig0027629:+52981 | Msa1435180:exon |
| TAATTGGTGGTGGCGGTGGC+GGG | 0.267031 | tig0027629:-54560 | Msa1435180:intergenic |
| TGCATTATCAATTAATTTGC+AGG | 0.274227 | tig0027629:+54144 | Msa1435180:CDS |
| CTCTCAAACTCCTTGATGTT+TGG | 0.274954 | tig0027629:-55302 | Msa1435180:intergenic |
| AAATATTACCTTTGAAAGAT+TGG | 0.293146 | tig0027629:-53637 | Msa1435180:intergenic |
| TTATAGCATCATGTATTGTT+TGG | 0.306290 | tig0027629:-55383 | Msa1435180:intergenic |
| ATAATTGGTGGTGGCGGTGG+CGG | 0.306446 | tig0027629:-54561 | Msa1435180:intergenic |
| AATTGGTGGTGGCGGTGGCG+GGG | 0.311891 | tig0027629:-54559 | Msa1435180:intergenic |
| ATCTCTGAAGTCTTCATAAT+TGG | 0.323102 | tig0027629:-54576 | Msa1435180:intergenic |
| TATAGCATCATGTATTGTTT+GGG | 0.350982 | tig0027629:-55382 | Msa1435180:intergenic |
| ATTGGTGGTGGCGGTGGCGG+GGG | 0.361406 | tig0027629:-54558 | Msa1435180:intergenic |
| TGAAAATGTTGATAGATTCC+TGG | 0.363230 | tig0027629:+54831 | Msa1435180:CDS |
| AGCTTGGCCGATGAGGCCTC+CGG | 0.366801 | tig0027629:-54193 | Msa1435180:intergenic |
| CCTGTTGTAGTCTGTCTTAG+AGG | 0.376234 | tig0027629:-54606 | Msa1435180:intergenic |
| TTTGTTAGGGTACAACTTAC+CGG | 0.378969 | tig0027629:+53551 | Msa1435180:intron |
| ACGGAGAAGGTTAAAAGCTT+TGG | 0.381346 | tig0027629:+55109 | Msa1435180:CDS |
| CCATAAATTCTCCATTCTAC+TGG | 0.390458 | tig0027629:-52981 | Msa1435180:intergenic |
| AATATTACCTTTGAAAGATT+GGG | 0.397926 | tig0027629:-53636 | Msa1435180:intergenic |
| TTGCTTCATTAGCTTGCGTT+TGG | 0.400523 | tig0027629:-54876 | Msa1435180:intergenic |
| TAGTGCATCCAAGCGATTAT+CGG | 0.415944 | tig0027629:+54261 | Msa1435180:CDS |
| TTCTAAATTGCAGAGTGAAA+TGG | 0.423619 | tig0027629:+55085 | Msa1435180:intron |
| AAACAGCTTTCAGGTAAAAC+AGG | 0.436606 | tig0027629:+54070 | Msa1435180:CDS |
| GTAGTCTGTCTTAGAGGATC+AGG | 0.438277 | tig0027629:-54600 | Msa1435180:intergenic |
| AGAAGAAGAAGGGCCAGAAT+TGG | 0.439656 | tig0027629:+54041 | Msa1435180:CDS |
| CCTCTAAGACAGACTACAAC+AGG | 0.445039 | tig0027629:+54606 | Msa1435180:CDS |
| AATGAAGAGCTACAAGCAAA+AGG | 0.447061 | tig0027629:+55209 | Msa1435180:CDS |
| TTCATAATTGGTGGTGGCGG+TGG | 0.460521 | tig0027629:-54564 | Msa1435180:intergenic |
| GGGAGACAGATGCAGATGAA+TGG | 0.461311 | tig0027629:+54640 | Msa1435180:CDS |
| TTTCTATGTGGTCGTAATCA+TGG | 0.462345 | tig0027629:-54093 | Msa1435180:intergenic |
| ATCTTTACCCGATAATCGCT+TGG | 0.462904 | tig0027629:-54269 | Msa1435180:intergenic |
| CATTGTTGGCGTAGGAGTAA+TGG | 0.466358 | tig0027629:-54472 | Msa1435180:intergenic |
| TGAGCAGAAGAGTGAGAGCC+CGG | 0.469018 | tig0027629:+54174 | Msa1435180:CDS |
| GCTTGGCCGATGAGGCCTCC+GGG | 0.477470 | tig0027629:-54192 | Msa1435180:intergenic |
| CTACAACAGGATCAAACAAT+GGG | 0.477695 | tig0027629:+54619 | Msa1435180:CDS |
| GAGGAGAACAAAGCTGATCT+TGG | 0.481626 | tig0027629:+53578 | Msa1435180:CDS |
| ACAAAACCCTCCCAGTAGAA+TGG | 0.487032 | tig0027629:+52970 | Msa1435180:exon |
| AGTGCATCCAAGCGATTATC+GGG | 0.489926 | tig0027629:+54262 | Msa1435180:CDS |
| ATTCCTGGGAAGACAAGAAA+AGG | 0.490794 | tig0027629:+54846 | Msa1435180:CDS |
| TGATTACGACCACATAGAAA+TGG | 0.492344 | tig0027629:+54096 | Msa1435180:CDS |
| GAAAATGTTGATAGATTCCT+GGG | 0.493456 | tig0027629:+54832 | Msa1435180:CDS |
| GGAGACAGATGCAGATGAAT+GGG | 0.502514 | tig0027629:+54641 | Msa1435180:CDS |
| TGAGAGCCCGGAGGCCTCAT+CGG | 0.503947 | tig0027629:+54186 | Msa1435180:CDS |
| ATGAAGAGCTACAAGCAAAA+GGG | 0.506299 | tig0027629:+55210 | Msa1435180:CDS |
| AGCTTTGTTCTCCTCCGTAC+CGG | 0.507897 | tig0027629:-53570 | Msa1435180:intergenic |
| AGTTGTAGAAGAAAAGAAAC+CGG | 0.517846 | tig0027629:+54443 | Msa1435180:CDS |
| TCTGAAGTCTTCATAATTGG+TGG | 0.519146 | tig0027629:-54573 | Msa1435180:intergenic |
| AGAATTTATGGAGTCAAATG+AGG | 0.520763 | tig0027629:+52993 | Msa1435180:CDS |
| AATTCTCCATTCTACTGGGA+GGG | 0.531614 | tig0027629:-52976 | Msa1435180:intergenic |
| CGGATGTATTTCTGCTTCTG+AGG | 0.538775 | tig0027629:+55269 | Msa1435180:CDS |
| CATAAATTCTCCATTCTACT+GGG | 0.545165 | tig0027629:-52980 | Msa1435180:intergenic |
| AGAAGAAAAGAAACCGGAAA+AGG | 0.548483 | tig0027629:+54449 | Msa1435180:CDS |
| GTCTTCATAATTGGTGGTGG+CGG | 0.550990 | tig0027629:-54567 | Msa1435180:intergenic |
| TCACTAATTGCCAAACATCA+AGG | 0.556055 | tig0027629:+55292 | Msa1435180:three_prime_UTR |
| ATTTAGATCTAAAGATGACC+AGG | 0.556568 | tig0027629:+54398 | Msa1435180:CDS |
| GCTTGGATGCACTACTGAGA+AGG | 0.556868 | tig0027629:-54252 | Msa1435180:intergenic |
| GAAGTCTTCATAATTGGTGG+TGG | 0.559569 | tig0027629:-54570 | Msa1435180:intergenic |
| TGCAGACGGCGCAAGAGCAA+AGG | 0.562482 | tig0027629:+55169 | Msa1435180:CDS |
| CAGAAAACCCAATCTTTCAA+AGG | 0.570940 | tig0027629:+53629 | Msa1435180:CDS |
| ATCTTGGTGCCACAAGAGAT+CGG | 0.579109 | tig0027629:+53594 | Msa1435180:CDS |
| CGGCGCAAGAGCAAAGGTCG+AGG | 0.580597 | tig0027629:+55175 | Msa1435180:CDS |
| ATGTTCAACAGAGAAGAAGA+AGG | 0.587013 | tig0027629:+54030 | Msa1435180:intron |
| ATGTTGACGCCTTGTCACCC+TGG | 0.599021 | tig0027629:-54416 | Msa1435180:intergenic |
| CTTGGATGCACTACTGAGAA+GGG | 0.599961 | tig0027629:-54251 | Msa1435180:intergenic |
| AGAGTGAAATGGAACGGAGA+AGG | 0.604934 | tig0027629:+55096 | Msa1435180:intron |
| CAAACATCAAGGAGTTTGAG+AGG | 0.607037 | tig0027629:+55303 | Msa1435180:three_prime_UTR |
| TAGGGTACAACTTACCGGTA+CGG | 0.607951 | tig0027629:+53556 | Msa1435180:intron |
| AAGCTCAAAAGCAAGGTGGA+CGG | 0.608433 | tig0027629:+54211 | Msa1435180:CDS |
| AATTGCAGAGTGAAATGGAA+CGG | 0.610000 | tig0027629:+55090 | Msa1435180:intron |
| TAAAGATGACCAGGGTGACA+AGG | 0.610189 | tig0027629:+54407 | Msa1435180:CDS |
| ATCGGCCAAGCTCAAAAGCA+AGG | 0.610955 | tig0027629:+54204 | Msa1435180:CDS |
| ACGCAAGCTAATGAAGCAAG+AGG | 0.611713 | tig0027629:+54880 | Msa1435180:CDS |
| ACTACAACAGGATCAAACAA+TGG | 0.614774 | tig0027629:+54618 | Msa1435180:CDS |
| AGGAGGAGCATTTGGCGCTG+TGG | 0.618095 | tig0027629:-54532 | Msa1435180:intergenic |
| GAACAGCATGCAAACTGCCA+CGG | 0.622376 | tig0027629:+55249 | Msa1435180:CDS |
| AAATTCTCCATTCTACTGGG+AGG | 0.626794 | tig0027629:-52977 | Msa1435180:intergenic |
| TGTTCAACAGAGAAGAAGAA+GGG | 0.638777 | tig0027629:+54031 | Msa1435180:intron |
| TATGTAAATCTAGTTGCAGA+CGG | 0.648425 | tig0027629:+55155 | Msa1435180:CDS |
| CAGCATGCACCATTTCTATG+TGG | 0.651802 | tig0027629:-54105 | Msa1435180:intergenic |
| CAAATTAATTGATAATGCAG+CGG | 0.651965 | tig0027629:-54140 | Msa1435180:intergenic |
| AGAGCTACAAGCAAAAGGGA+AGG | 0.666489 | tig0027629:+55214 | Msa1435180:CDS |
| GCAGAAGAGTGAGAGCCCGG+AGG | 0.674160 | tig0027629:+54177 | Msa1435180:CDS |
| TTTAGATCTAAAGATGACCA+GGG | 0.678368 | tig0027629:+54399 | Msa1435180:CDS |
| AACTCGACAAGATCAAACAA+AGG | 0.689212 | tig0027629:+54673 | Msa1435180:CDS |
| GGTACAACTTACCGGTACGG+AGG | 0.692894 | tig0027629:+53559 | Msa1435180:CDS |
| CAGAAGCAGAAATACATCCG+TGG | 0.708198 | tig0027629:-55266 | Msa1435180:intergenic |
| GGCCAAGCTCAAAAGCAAGG+TGG | 0.710319 | tig0027629:+54207 | Msa1435180:CDS |
| TACAACAGGATCAAACAATG+GGG | 0.783663 | tig0027629:+54620 | Msa1435180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTCAAAAAAAATAGTT+AGG | + | tig0027629:53440-53459 | Msa1435180:intron | 10.0% |
| !! | TTATTCAAAAAAAATAGTTA+GGG | + | tig0027629:53441-53460 | Msa1435180:intron | 10.0% |
| !!! | TTTCTTTTCCTTTTATTTTT+TGG | - | tig0027629:53926-53945 | Msa1435180:intergenic | 15.0% |
| !! | TACAATATTTACCATGTTAA+TGG | + | tig0027629:53105-53124 | Msa1435180:intron | 20.0% |
| !! | AAAAAAGTGATTATGATGTT+TGG | - | tig0027629:53306-53325 | Msa1435180:intergenic | 20.0% |
| !!! | ATTACATGAACAATTTTGTT+AGG | + | tig0027629:53537-53556 | Msa1435180:intron | 20.0% |
| !!! | TTACATGAACAATTTTGTTA+GGG | + | tig0027629:53538-53557 | Msa1435180:intron | 20.0% |
| !!! | AATATTACCTTTGAAAGATT+GGG | - | tig0027629:53639-53658 | Msa1435180:intergenic | 20.0% |
| !!! | AAATATTACCTTTGAAAGAT+TGG | - | tig0027629:53640-53659 | Msa1435180:intergenic | 20.0% |
| !! | ATAATAAAGAGGAAAAGAAA+AGG | + | tig0027629:53822-53841 | Msa1435180:intron | 20.0% |
| !! | ATTATGATTCATAAATGAAG+TGG | - | tig0027629:54304-54323 | Msa1435180:intergenic | 20.0% |
| !!! | GTTTTTCTACTTAAGAATAA+TGG | - | tig0027629:54329-54348 | Msa1435180:intergenic | 20.0% |
| !! | TATTAATGAAAAACATTGTC+AGG | + | tig0027629:54798-54817 | Msa1435180:intron | 20.0% |
| !! | AATGATAAAAGAAACTAGAA+AGG | + | tig0027629:55013-55032 | Msa1435180:intron | 20.0% |
| ! | AAATATTGTAACAACAAGCT+AGG | - | tig0027629:53095-53114 | Msa1435180:intergenic | 25.0% |
| ! | AATATTTACCATGTTAATGG+TGG | + | tig0027629:53108-53127 | Msa1435180:intron | 25.0% |
| !!! | TTGAAAAAGCTAGTTTTTCA+AGG | + | tig0027629:53139-53158 | Msa1435180:intron | 25.0% |
| !! | AGAAAACATGAGATTTTCAA+TGG | - | tig0027629:53241-53260 | Msa1435180:intergenic | 25.0% |
| !!! | TTCTCTATAGTATTGGTTAT+TGG | - | tig0027629:53273-53292 | Msa1435180:intergenic | 25.0% |
| !!! | CTCACACCATTTTATTTTAA+GGG | + | tig0027629:53339-53358 | Msa1435180:intron | 25.0% |
| ! | TCAAGACCCTTAAAATAAAA+TGG | - | tig0027629:53348-53367 | Msa1435180:intergenic | 25.0% |
| ! | TTGATATAGCTATCATTGAT+CGG | - | tig0027629:53411-53430 | Msa1435180:intergenic | 25.0% |
| !! | AAGATGCTCATAATTTTCAT+TGG | + | tig0027629:53505-53524 | Msa1435180:intron | 25.0% |
| ! | TAAGATGTATCTAATGTGTT+TGG | - | tig0027629:53706-53725 | Msa1435180:intergenic | 25.0% |
| ! | AACCATTAAGCATAATAAAG+AGG | + | tig0027629:53811-53830 | Msa1435180:intron | 25.0% |
| ! | TTCCTCTTTATTATGCTTAA+TGG | - | tig0027629:53816-53835 | Msa1435180:intergenic | 25.0% |
| ! | GATAATGCATAATATATGCA+GGG | + | tig0027629:53875-53894 | Msa1435180:intron | 25.0% |
| !!! | CTTTTCCTTTTATTTTTTGG+TGG | - | tig0027629:53923-53942 | Msa1435180:intergenic | 25.0% |
| !!! | CAAATTAATTGATAATGCAG+CGG | - | tig0027629:54143-54162 | Msa1435180:intergenic | 25.0% |
| !!! | TGCATTATCAATTAATTTGC+AGG | + | tig0027629:54144-54163 | Msa1435180:CDS | 25.0% |
| ! | TATAGCATCATGTATTGTTT+GGG | - | tig0027629:55385-55404 | Msa1435180:intergenic | 25.0% |
| ! | TTATAGCATCATGTATTGTT+TGG | - | tig0027629:55386-55405 | Msa1435180:intergenic | 25.0% |
| CATAAATTCTCCATTCTACT+GGG | - | tig0027629:52983-53002 | Msa1435180:intergenic | 30.0% | |
| AGAATTTATGGAGTCAAATG+AGG | + | tig0027629:52993-53012 | Msa1435180:CDS | 30.0% | |
| TTTCTTTCCACACATCTTAT+TGG | + | tig0027629:53031-53050 | Msa1435180:intron | 30.0% | |
| ATGGAGATTCTCTATAGTAT+TGG | - | tig0027629:53280-53299 | Msa1435180:intergenic | 30.0% | |
| TGATTATGATGTTTGGATGA+TGG | - | tig0027629:53299-53318 | Msa1435180:intergenic | 30.0% | |
| CCTTAAAATAAAATGGTGTG+AGG | - | tig0027629:53341-53360 | Msa1435180:intergenic | 30.0% | |
| !!! | CCTCACACCATTTTATTTTA+AGG | + | tig0027629:53338-53357 | Msa1435180:intron | 30.0% |
| ! | TTTAAGGGTCTTGATTTTAC+AGG | + | tig0027629:53354-53373 | Msa1435180:intron | 30.0% |
| TGATATAGCTATCATTGATC+GGG | - | tig0027629:53410-53429 | Msa1435180:intergenic | 30.0% | |
| ! | AAAGATTGGGTTTTCTGTAT+AGG | - | tig0027629:53626-53645 | Msa1435180:intergenic | 30.0% |
| AATGAGAGAAATGAAGGTAA+GGG | - | tig0027629:53676-53695 | Msa1435180:intergenic | 30.0% | |
| ACTAACAATGAGAGAAATGA+AGG | - | tig0027629:53682-53701 | Msa1435180:intergenic | 30.0% | |
| TATTTCAATCACTCTCCAAT+GGG | - | tig0027629:53737-53756 | Msa1435180:intergenic | 30.0% | |
| TTATTTCAATCACTCTCCAA+TGG | - | tig0027629:53738-53757 | Msa1435180:intergenic | 30.0% | |
| GGATAATGCATAATATATGC+AGG | + | tig0027629:53874-53893 | Msa1435180:intron | 30.0% | |
| CATAATATATGCAGGGTTTA+TGG | + | tig0027629:53882-53901 | Msa1435180:intron | 30.0% | |
| !!! | TTTATTTTTTGGTGGTGTCT+GGG | - | tig0027629:53915-53934 | Msa1435180:intergenic | 30.0% |
| !!! | TTTTATTTTTTGGTGGTGTC+TGG | - | tig0027629:53916-53935 | Msa1435180:intergenic | 30.0% |
| AGACACCACCAAAAAATAAA+AGG | + | tig0027629:53915-53934 | Msa1435180:intron | 30.0% | |
| ATTTAGATCTAAAGATGACC+AGG | + | tig0027629:54398-54417 | Msa1435180:CDS | 30.0% | |
| TTTAGATCTAAAGATGACCA+GGG | + | tig0027629:54399-54418 | Msa1435180:CDS | 30.0% | |
| ! | TTTCTTTTCTTCTACAACTG+AGG | - | tig0027629:54442-54461 | Msa1435180:intergenic | 30.0% |
| AGTTGTAGAAGAAAAGAAAC+CGG | + | tig0027629:54443-54462 | Msa1435180:CDS | 30.0% | |
| !! | ATCTCTGAAGTCTTCATAAT+TGG | - | tig0027629:54579-54598 | Msa1435180:intergenic | 30.0% |
| ! | TGAAAATGTTGATAGATTCC+TGG | + | tig0027629:54831-54850 | Msa1435180:CDS | 30.0% |
| ! | GAAAATGTTGATAGATTCCT+GGG | + | tig0027629:54832-54851 | Msa1435180:CDS | 30.0% |
| ATAAAAGAAACTAGAAAGGC+CGG | + | tig0027629:55017-55036 | Msa1435180:intron | 30.0% | |
| TTCTAAATTGCAGAGTGAAA+TGG | + | tig0027629:55085-55104 | Msa1435180:intron | 30.0% | |
| TATGTAAATCTAGTTGCAGA+CGG | + | tig0027629:55155-55174 | Msa1435180:CDS | 30.0% | |
| !!! | CTTGTAGCTCTTCATTTTTT+CGG | - | tig0027629:55205-55224 | Msa1435180:intergenic | 30.0% |
| CCATAAATTCTCCATTCTAC+TGG | - | tig0027629:52984-53003 | Msa1435180:intergenic | 35.0% | |
| CCAGTAGAATGGAGAATTTA+TGG | + | tig0027629:52981-53000 | Msa1435180:exon | 35.0% | |
| ! | TCAAATGAGGTTAGTTGTTC+TGG | + | tig0027629:53006-53025 | Msa1435180:intron | 35.0% |
| TTTCCACACATCTTATTGGA+TGG | + | tig0027629:53035-53054 | Msa1435180:intron | 35.0% | |
| TTACCATCCAATAAGATGTG+TGG | - | tig0027629:53041-53060 | Msa1435180:intergenic | 35.0% | |
| !!! | AAAAGCTAGTTTTTCAAGGC+TGG | + | tig0027629:53143-53162 | Msa1435180:intron | 35.0% |
| ! | AGATTTTCAATGGAGAGAGT+CGG | - | tig0027629:53231-53250 | Msa1435180:intergenic | 35.0% |
| ATATAGCTATCATTGATCGG+GGG | - | tig0027629:53408-53427 | Msa1435180:intergenic | 35.0% | |
| GATATAGCTATCATTGATCG+GGG | - | tig0027629:53409-53428 | Msa1435180:intergenic | 35.0% | |
| TTTGTTAGGGTACAACTTAC+CGG | + | tig0027629:53551-53570 | Msa1435180:intron | 35.0% | |
| CAGAAAACCCAATCTTTCAA+AGG | + | tig0027629:53629-53648 | Msa1435180:CDS | 35.0% | |
| ATGAGAGAAATGAAGGTAAG+GGG | - | tig0027629:53675-53694 | Msa1435180:intergenic | 35.0% | |
| CAATGAGAGAAATGAAGGTA+AGG | - | tig0027629:53677-53696 | Msa1435180:intergenic | 35.0% | |
| CATCTTATTATGTACCCCAT+TGG | + | tig0027629:53719-53738 | Msa1435180:intron | 35.0% | |
| ATTTCAATCACTCTCCAATG+GGG | - | tig0027629:53736-53755 | Msa1435180:intergenic | 35.0% | |
| !!! | TTATTTTTTGGTGGTGTCTG+GGG | - | tig0027629:53914-53933 | Msa1435180:intergenic | 35.0% |
| TTCTTCTTCTCTGTTGAACA+TGG | - | tig0027629:54031-54050 | Msa1435180:intergenic | 35.0% | |
| ATGTTCAACAGAGAAGAAGA+AGG | + | tig0027629:54030-54049 | Msa1435180:intron | 35.0% | |
| TGTTCAACAGAGAAGAAGAA+GGG | + | tig0027629:54031-54050 | Msa1435180:intron | 35.0% | |
| ! | AAACAGCTTTCAGGTAAAAC+AGG | + | tig0027629:54070-54089 | Msa1435180:CDS | 35.0% |
| TTTCTATGTGGTCGTAATCA+TGG | - | tig0027629:54096-54115 | Msa1435180:intergenic | 35.0% | |
| TGATTACGACCACATAGAAA+TGG | + | tig0027629:54096-54115 | Msa1435180:CDS | 35.0% | |
| ACTTTGTCTGCATCATGTTT+AGG | + | tig0027629:54372-54391 | Msa1435180:intron | 35.0% | |
| AGAAGAAAAGAAACCGGAAA+AGG | + | tig0027629:54449-54468 | Msa1435180:CDS | 35.0% | |
| !! | GTTGCAGTCTTTTTCATTGT+TGG | - | tig0027629:54489-54508 | Msa1435180:intergenic | 35.0% |
| AAAAAGACTGCAACTTTCAC+TGG | + | tig0027629:54495-54514 | Msa1435180:CDS | 35.0% | |
| ! | TCTGAAGTCTTCATAATTGG+TGG | - | tig0027629:54576-54595 | Msa1435180:intergenic | 35.0% |
| ACTACAACAGGATCAAACAA+TGG | + | tig0027629:54618-54637 | Msa1435180:CDS | 35.0% | |
| CTACAACAGGATCAAACAAT+GGG | + | tig0027629:54619-54638 | Msa1435180:CDS | 35.0% | |
| TACAACAGGATCAAACAATG+GGG | + | tig0027629:54620-54639 | Msa1435180:CDS | 35.0% | |
| AACTCGACAAGATCAAACAA+AGG | + | tig0027629:54673-54692 | Msa1435180:CDS | 35.0% | |
| !! | CAAGATCAAACAAAGGTACT+TGG | + | tig0027629:54680-54699 | Msa1435180:intron | 35.0% |
| CTGAATGTAATGCTTGATTC+AGG | - | tig0027629:54772-54791 | Msa1435180:intergenic | 35.0% | |
| TCCTTATTAGCTGTCTAGTA+TGG | + | tig0027629:54977-54996 | Msa1435180:intron | 35.0% | |
| TCCATACTAGACAGCTAATA+AGG | - | tig0027629:54981-55000 | Msa1435180:intergenic | 35.0% | |
| TAAAAGAAACTAGAAAGGCC+GGG | + | tig0027629:55018-55037 | Msa1435180:intron | 35.0% | |
| AATTGCAGAGTGAAATGGAA+CGG | + | tig0027629:55090-55109 | Msa1435180:intron | 35.0% | |
| AATGAAGAGCTACAAGCAAA+AGG | + | tig0027629:55209-55228 | Msa1435180:CDS | 35.0% | |
| ATGAAGAGCTACAAGCAAAA+GGG | + | tig0027629:55210-55229 | Msa1435180:CDS | 35.0% | |
| TCACTAATTGCCAAACATCA+AGG | + | tig0027629:55292-55311 | Msa1435180:three_prime_UTR | 35.0% | |
| AATTCTCCATTCTACTGGGA+GGG | - | tig0027629:52979-52998 | Msa1435180:intergenic | 40.0% | |
| AAATTCTCCATTCTACTGGG+AGG | - | tig0027629:52980-52999 | Msa1435180:intergenic | 40.0% | |
| TCTTGTTGCCACCATTAACA+TGG | - | tig0027629:53119-53138 | Msa1435180:intergenic | 40.0% | |
| ! | GGGTATCGTTGATCAAACAT+GGG | - | tig0027629:53210-53229 | Msa1435180:intergenic | 40.0% |
| ! | GATTTTCAATGGAGAGAGTC+GGG | - | tig0027629:53230-53249 | Msa1435180:intergenic | 40.0% |
| ! | AGGTATTTTCCGATCTCTTG+TGG | - | tig0027629:53606-53625 | Msa1435180:intergenic | 40.0% |
| TACCAACTGAGCTAAGTTCA+CGG | - | tig0027629:53853-53872 | Msa1435180:intergenic | 40.0% | |
| ! | TGAACTTAGCTCAGTTGGTA+AGG | + | tig0027629:53853-53872 | Msa1435180:intron | 40.0% |
| !!! | GCTGTTTTTGCAACCAATTC+TGG | - | tig0027629:54057-54076 | Msa1435180:intergenic | 40.0% |
| TGGTTGCAAAAACAGCTTTC+AGG | + | tig0027629:54061-54080 | Msa1435180:CDS | 40.0% | |
| TAGTGCATCCAAGCGATTAT+CGG | + | tig0027629:54261-54280 | Msa1435180:CDS | 40.0% | |
| ATCTTTACCCGATAATCGCT+TGG | - | tig0027629:54272-54291 | Msa1435180:intergenic | 40.0% | |
| !! | GTCTTTTTCATTGTTGGCGT+AGG | - | tig0027629:54483-54502 | Msa1435180:intergenic | 40.0% |
| GAAGTCTTCATAATTGGTGG+TGG | - | tig0027629:54573-54592 | Msa1435180:intergenic | 40.0% | |
| GTAATGCTTGATTCAGGAGA+TGG | - | tig0027629:54766-54785 | Msa1435180:intergenic | 40.0% | |
| ATTCCTGGGAAGACAAGAAA+AGG | + | tig0027629:54846-54865 | Msa1435180:CDS | 40.0% | |
| !! | TTGCTTCATTAGCTTGCGTT+TGG | - | tig0027629:54879-54898 | Msa1435180:intergenic | 40.0% |
| ACGGAGAAGGTTAAAAGCTT+TGG | + | tig0027629:55109-55128 | Msa1435180:CDS | 40.0% | |
| CTCTCAAACTCCTTGATGTT+TGG | - | tig0027629:55305-55324 | Msa1435180:intergenic | 40.0% | |
| CAAACATCAAGGAGTTTGAG+AGG | + | tig0027629:55303-55322 | Msa1435180:three_prime_UTR | 40.0% | |
| ACAAAACCCTCCCAGTAGAA+TGG | + | tig0027629:52970-52989 | Msa1435180:exon | 45.0% | |
| CAACAAGCTAGGTATGTGTC+TGG | - | tig0027629:53084-53103 | Msa1435180:intergenic | 45.0% | |
| ! | CGGGTATCGTTGATCAAACA+TGG | - | tig0027629:53211-53230 | Msa1435180:intergenic | 45.0% |
| AGGACCATATTGTCCCTGAA+GGG | + | tig0027629:53374-53393 | Msa1435180:intron | 45.0% | |
| CTATCATTGATCGGGGGAAA+GGG | - | tig0027629:53402-53421 | Msa1435180:intergenic | 45.0% | |
| TAGGGTACAACTTACCGGTA+CGG | + | tig0027629:53556-53575 | Msa1435180:intron | 45.0% | |
| GAGGAGAACAAAGCTGATCT+TGG | + | tig0027629:53578-53597 | Msa1435180:CDS | 45.0% | |
| !! | ATCTTGGTGCCACAAGAGAT+CGG | + | tig0027629:53594-53613 | Msa1435180:CDS | 45.0% |
| AGAAGAAGAAGGGCCAGAAT+TGG | + | tig0027629:54041-54060 | Msa1435180:CDS | 45.0% | |
| CAGCATGCACCATTTCTATG+TGG | - | tig0027629:54108-54127 | Msa1435180:intergenic | 45.0% | |
| AAGCTCAAAAGCAAGGTGGA+CGG | + | tig0027629:54211-54230 | Msa1435180:CDS | 45.0% | |
| CTTGGATGCACTACTGAGAA+GGG | - | tig0027629:54254-54273 | Msa1435180:intergenic | 45.0% | |
| AGTGCATCCAAGCGATTATC+GGG | + | tig0027629:54262-54281 | Msa1435180:CDS | 45.0% | |
| TAAAGATGACCAGGGTGACA+AGG | + | tig0027629:54407-54426 | Msa1435180:CDS | 45.0% | |
| ! | GTAGGAGTAATGGCCTTTTC+CGG | - | tig0027629:54465-54484 | Msa1435180:intergenic | 45.0% |
| CATTGTTGGCGTAGGAGTAA+TGG | - | tig0027629:54475-54494 | Msa1435180:intergenic | 45.0% | |
| !! | GTCTTCATAATTGGTGGTGG+CGG | - | tig0027629:54570-54589 | Msa1435180:intergenic | 45.0% |
| GTAGTCTGTCTTAGAGGATC+AGG | - | tig0027629:54603-54622 | Msa1435180:intergenic | 45.0% | |
| CCTGTTGTAGTCTGTCTTAG+AGG | - | tig0027629:54609-54628 | Msa1435180:intergenic | 45.0% | |
| !! | CCTCTAAGACAGACTACAAC+AGG | + | tig0027629:54606-54625 | Msa1435180:CDS | 45.0% |
| GGAGACAGATGCAGATGAAT+GGG | + | tig0027629:54641-54660 | Msa1435180:CDS | 45.0% | |
| ! | CATCCTTTTCTTGTCTTCCC+AGG | - | tig0027629:54852-54871 | Msa1435180:intergenic | 45.0% |
| ACGCAAGCTAATGAAGCAAG+AGG | + | tig0027629:54880-54899 | Msa1435180:CDS | 45.0% | |
| AGGCCGGGTAAAAAATGTTG+TGG | + | tig0027629:55033-55052 | Msa1435180:intron | 45.0% | |
| GGCCGGGTAAAAAATGTTGT+GGG | + | tig0027629:55034-55053 | Msa1435180:intron | 45.0% | |
| !!! | CGCCCACAACATTTTTTACC+CGG | - | tig0027629:55039-55058 | Msa1435180:intergenic | 45.0% |
| AGAGTGAAATGGAACGGAGA+AGG | + | tig0027629:55096-55115 | Msa1435180:intron | 45.0% | |
| AGAGCTACAAGCAAAAGGGA+AGG | + | tig0027629:55214-55233 | Msa1435180:CDS | 45.0% | |
| CAGAAGCAGAAATACATCCG+TGG | - | tig0027629:55269-55288 | Msa1435180:intergenic | 45.0% | |
| ! | CGGATGTATTTCTGCTTCTG+AGG | + | tig0027629:55269-55288 | Msa1435180:CDS | 45.0% |
| !!! | ACTGGGAGGGTTTTGTTCTC+AGG | - | tig0027629:52966-52985 | Msa0224770:intergenic | 50.0% |
| CAGGACCATATTGTCCCTGA+AGG | + | tig0027629:53373-53392 | Msa1435180:intron | 50.0% | |
| GGTTCCCTTCAGGGACAATA+TGG | - | tig0027629:53381-53400 | Msa1435180:intergenic | 50.0% | |
| GCTATCATTGATCGGGGGAA+AGG | - | tig0027629:53403-53422 | Msa1435180:intergenic | 50.0% | |
| !! | AGCTTTGTTCTCCTCCGTAC+CGG | - | tig0027629:53573-53592 | Msa1435180:intergenic | 50.0% |
| CTCCGTGAACTTAGCTCAGT+TGG | + | tig0027629:53848-53867 | Msa1435180:intron | 50.0% | |
| ATCGGCCAAGCTCAAAAGCA+AGG | + | tig0027629:54204-54223 | Msa1435180:CDS | 50.0% | |
| !! | GTCCACCTTGCTTTTGAGCT+TGG | - | tig0027629:54212-54231 | Msa1435180:intergenic | 50.0% |
| GCTTGGATGCACTACTGAGA+AGG | - | tig0027629:54255-54274 | Msa1435180:intergenic | 50.0% | |
| !! | TTCATAATTGGTGGTGGCGG+TGG | - | tig0027629:54567-54586 | Msa1435180:intergenic | 50.0% |
| GGGAGACAGATGCAGATGAA+TGG | + | tig0027629:54640-54659 | Msa1435180:CDS | 50.0% | |
| GAACAGCATGCAAACTGCCA+CGG | + | tig0027629:55249-55268 | Msa1435180:CDS | 50.0% | |
| GGTACAACTTACCGGTACGG+AGG | + | tig0027629:53559-53578 | Msa1435180:CDS | 55.0% | |
| TGAGCAGAAGAGTGAGAGCC+CGG | + | tig0027629:54174-54193 | Msa1435180:CDS | 55.0% | |
| ! | GCTTTTGAGCTTGGCCGATG+AGG | - | tig0027629:54203-54222 | Msa1435180:intergenic | 55.0% |
| GGCCAAGCTCAAAAGCAAGG+TGG | + | tig0027629:54207-54226 | Msa1435180:CDS | 55.0% | |
| ATGTTGACGCCTTGTCACCC+TGG | - | tig0027629:54419-54438 | Msa1435180:intergenic | 55.0% | |
| !! | ATAATTGGTGGTGGCGGTGG+CGG | - | tig0027629:54564-54583 | Msa1435180:intergenic | 55.0% |
| GGGGGAAAGGGTTCCCTTCA+GGG | - | tig0027629:53390-53409 | Msa1435180:intergenic | 60.0% | |
| !! | AGGAGGAGCATTTGGCGCTG+TGG | - | tig0027629:54535-54554 | Msa1435180:intergenic | 60.0% |
| !! | TAATTGGTGGTGGCGGTGGC+GGG | - | tig0027629:54563-54582 | Msa1435180:intergenic | 60.0% |
| TGCAGACGGCGCAAGAGCAA+AGG | + | tig0027629:55169-55188 | Msa1435180:CDS | 60.0% | |
| CGGGGGAAAGGGTTCCCTTC+AGG | - | tig0027629:53391-53410 | Msa1435180:intergenic | 65.0% | |
| GCAGAAGAGTGAGAGCCCGG+AGG | + | tig0027629:54177-54196 | Msa1435180:CDS | 65.0% | |
| TGAGAGCCCGGAGGCCTCAT+CGG | + | tig0027629:54186-54205 | Msa1435180:CDS | 65.0% | |
| AGCTTGGCCGATGAGGCCTC+CGG | - | tig0027629:54196-54215 | Msa1435180:intergenic | 65.0% | |
| !! | GGGGGTGGAGGAGGAGCATT+TGG | - | tig0027629:54543-54562 | Msa1435180:intergenic | 65.0% |
| !! | AATTGGTGGTGGCGGTGGCG+GGG | - | tig0027629:54562-54581 | Msa1435180:intergenic | 65.0% |
| CGGCGCAAGAGCAAAGGTCG+AGG | + | tig0027629:55175-55194 | Msa1435180:CDS | 65.0% | |
| GCTTGGCCGATGAGGCCTCC+GGG | - | tig0027629:54195-54214 | Msa1435180:intergenic | 70.0% | |
| !! | ATTGGTGGTGGCGGTGGCGG+GGG | - | tig0027629:54561-54580 | Msa1435180:intergenic | 70.0% |
| !!! | GGCGGTGGCGGGGGTGGAGG+AGG | - | tig0027629:54552-54571 | Msa1435180:intergenic | 85.0% |
| !!! | GGTGGCGGTGGCGGGGGTGG+AGG | - | tig0027629:54555-54574 | Msa1435180:intergenic | 85.0% |
| !!! | GGTGGTGGCGGTGGCGGGGG+TGG | - | tig0027629:54558-54577 | Msa1435180:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0027629 | gene | 52952 | 55478 | 52952 | ID=Msa1435180;Name=Msa1435180 |
| tig0027629 | mRNA | 52952 | 55478 | 52952 | ID=Msa1435180-mRNA-1;Parent=Msa1435180;Name=Msa1435180-mRNA-1;_AED=0.13;_eAED=0.13;_QI=37|1|1|1|0.8|0.83|6|189|311 |
| tig0027629 | exon | 52952 | 53014 | 52952 | ID=Msa1435180-mRNA-1:exon:9532;Parent=Msa1435180-mRNA-1 |
| tig0027629 | exon | 53559 | 53650 | 53559 | ID=Msa1435180-mRNA-1:exon:9533;Parent=Msa1435180-mRNA-1 |
| tig0027629 | exon | 54041 | 54283 | 54041 | ID=Msa1435180-mRNA-1:exon:9534;Parent=Msa1435180-mRNA-1 |
| tig0027629 | exon | 54394 | 54694 | 54394 | ID=Msa1435180-mRNA-1:exon:9535;Parent=Msa1435180-mRNA-1 |
| tig0027629 | exon | 54820 | 54901 | 54820 | ID=Msa1435180-mRNA-1:exon:9536;Parent=Msa1435180-mRNA-1 |
| tig0027629 | exon | 55098 | 55478 | 55098 | ID=Msa1435180-mRNA-1:exon:9537;Parent=Msa1435180-mRNA-1 |
| tig0027629 | five_prime_UTR | 52952 | 52988 | 52952 | ID=Msa1435180-mRNA-1:five_prime_utr;Parent=Msa1435180-mRNA-1 |
| tig0027629 | CDS | 52989 | 53014 | 52989 | ID=Msa1435180-mRNA-1:cds;Parent=Msa1435180-mRNA-1 |
| tig0027629 | CDS | 53559 | 53650 | 53559 | ID=Msa1435180-mRNA-1:cds;Parent=Msa1435180-mRNA-1 |
| tig0027629 | CDS | 54041 | 54283 | 54041 | ID=Msa1435180-mRNA-1:cds;Parent=Msa1435180-mRNA-1 |
| tig0027629 | CDS | 54394 | 54694 | 54394 | ID=Msa1435180-mRNA-1:cds;Parent=Msa1435180-mRNA-1 |
| tig0027629 | CDS | 54820 | 54901 | 54820 | ID=Msa1435180-mRNA-1:cds;Parent=Msa1435180-mRNA-1 |
| tig0027629 | CDS | 55098 | 55289 | 55098 | ID=Msa1435180-mRNA-1:cds;Parent=Msa1435180-mRNA-1 |
| tig0027629 | three_prime_UTR | 55290 | 55478 | 55290 | ID=Msa1435180-mRNA-1:three_prime_utr;Parent=Msa1435180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
