Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440060 | sp|Q9FJL3|FKB65_ARATH | 63.889 | 72 | 14 | 1 | 10 | 69 | 29 | 100 | 2.18e-17 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440060 | A0A396JP05 | 72.332 | 253 | 70 | 0 | 113 | 365 | 119 | 371 | 4.93e-131 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1137850 | Msa1440060 | 0.911083 | 9.080092e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440060 | MtrunA17_Chr1g0173691 | 72.332 | 253 | 70 | 0 | 113 | 365 | 119 | 371 | 9.49e-135 | 389 |
| Msa1440060 | MtrunA17_Chr7g0248821 | 75.127 | 197 | 49 | 0 | 169 | 365 | 1 | 197 | 9.16e-105 | 306 |
| Msa1440060 | MtrunA17_Chr1g0206511 | 72.727 | 198 | 54 | 0 | 168 | 365 | 1 | 198 | 4.65e-101 | 296 |
| Msa1440060 | MtrunA17_Chr7g0269671 | 69.014 | 213 | 66 | 0 | 113 | 325 | 120 | 332 | 7.85e-101 | 301 |
| Msa1440060 | MtrunA17_Chr3g0101861 | 56.522 | 253 | 110 | 0 | 113 | 365 | 213 | 465 | 1.30e-96 | 295 |
| Msa1440060 | MtrunA17_Chr3g0133361 | 56.250 | 256 | 106 | 2 | 113 | 365 | 41 | 293 | 1.64e-95 | 286 |
| Msa1440060 | MtrunA17_Chr6g0472831 | 55.399 | 213 | 91 | 3 | 113 | 323 | 41 | 251 | 7.32e-75 | 232 |
| Msa1440060 | MtrunA17_Chr3g0100401 | 69.291 | 127 | 39 | 0 | 168 | 294 | 1 | 127 | 1.87e-62 | 196 |
| Msa1440060 | MtrunA17_Chr3g0139511 | 75.676 | 74 | 18 | 0 | 292 | 365 | 107 | 180 | 1.44e-32 | 120 |
| Msa1440060 | MtrunA17_Chr8g0339141 | 78.750 | 80 | 5 | 1 | 1 | 68 | 13 | 92 | 3.06e-22 | 98.2 |
| Msa1440060 | MtrunA17_Chr8g0377771 | 57.778 | 90 | 16 | 2 | 1 | 68 | 1 | 90 | 5.97e-21 | 94.4 |
| Msa1440060 | MtrunA17_Chr3g0129801 | 77.083 | 48 | 11 | 0 | 268 | 315 | 7 | 54 | 7.94e-19 | 80.1 |
| Msa1440060 | MtrunA17_Chr2g0307571 | 61.404 | 57 | 22 | 0 | 248 | 304 | 1 | 57 | 2.66e-16 | 72.4 |
| Msa1440060 | MtrunA17_Chr7g0234801 | 54.651 | 86 | 21 | 2 | 1 | 68 | 1 | 86 | 2.18e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440060 | AT3G51690.1 | 45.098 | 255 | 133 | 3 | 113 | 365 | 82 | 331 | 3.05e-68 | 218 |
| Msa1440060 | AT3G51700.1 | 46.586 | 249 | 127 | 3 | 117 | 362 | 87 | 332 | 9.43e-66 | 212 |
| Msa1440060 | AT5G28780.1 | 41.732 | 254 | 144 | 3 | 113 | 365 | 80 | 330 | 3.04e-60 | 197 |
| Msa1440060 | AT5G48570.1 | 63.889 | 72 | 14 | 1 | 10 | 69 | 29 | 100 | 2.21e-18 | 87.0 |
| Msa1440060 | AT3G25230.1 | 69.697 | 66 | 7 | 2 | 15 | 68 | 27 | 91 | 5.79e-17 | 82.8 |
| Msa1440060 | AT3G25230.2 | 69.697 | 66 | 7 | 2 | 15 | 68 | 27 | 91 | 6.23e-17 | 82.4 |
Find 80 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATGTTTCCTAACAAATT+TGG | 0.087569 | tig0028948:-15442 | None:intergenic |
| GAGGACCATAGATCAAAATT+TGG | 0.204699 | tig0028948:+15720 | Msa1440060:CDS |
| TGATCAACAATTGTATTCTT+TGG | 0.265335 | tig0028948:-15502 | None:intergenic |
| CAATGTTTCCTAACAAATTT+GGG | 0.286373 | tig0028948:-15441 | None:intergenic |
| CTTGAGGCAGAGATAATATC+TGG | 0.311263 | tig0028948:+15793 | Msa1440060:CDS |
| TTATGTGTAGTTCATTATAC+TGG | 0.313269 | tig0028948:+13103 | Msa1440060:intron |
| ACTACTTTCAATTTCACTCT+TGG | 0.361943 | tig0028948:+13172 | Msa1440060:CDS |
| AGGACCATAGATCAAAATTT+GGG | 0.367590 | tig0028948:+15721 | Msa1440060:CDS |
| TTCAATCGAATCCTATGGTT+TGG | 0.369262 | tig0028948:-15673 | None:intergenic |
| ACAATGGTGTTGAGAAATTC+AGG | 0.378095 | tig0028948:-15637 | None:intergenic |
| AGCACTTACCCAAATTTGTT+AGG | 0.378715 | tig0028948:+15433 | Msa1440060:CDS |
| AGTTTGATTCTAGCAGAGAT+AGG | 0.388381 | tig0028948:+13146 | Msa1440060:CDS |
| TATACTGGAACGTTGCTTGA+TGG | 0.393092 | tig0028948:+13118 | Msa1440060:CDS |
| GACTTGCTTATTCCAAGTTC+AGG | 0.393967 | tig0028948:+15385 | Msa1440060:CDS |
| AAAGAATACAATTGTTGATC+AGG | 0.395362 | tig0028948:+15504 | Msa1440060:CDS |
| AAACCAAGTGCTACACATTA+CGG | 0.405179 | tig0028948:-16122 | None:intergenic |
| TCCCACATCGTACTATTATC+AGG | 0.413728 | tig0028948:+13747 | Msa1440060:CDS |
| CTTTCAACAATAGATGCAAT+AGG | 0.418780 | tig0028948:-15412 | None:intergenic |
| CTTCAAGAATAATAATAGAT+AGG | 0.425201 | tig0028948:-13370 | None:intergenic |
| AAGATTGATTATTACAAAGA+TGG | 0.426799 | tig0028948:+15759 | Msa1440060:CDS |
| ATAATATCTGGGTCTAATAT+AGG | 0.430195 | tig0028948:+15805 | Msa1440060:CDS |
| AAACTGCCTTCGTTTAAACT+TGG | 0.436534 | tig0028948:-15884 | None:intergenic |
| AATGACTATTAACAAGAGTC+AGG | 0.437464 | tig0028948:+15927 | Msa1440060:CDS |
| CCAAATTTGTTAGGAAACAT+TGG | 0.447300 | tig0028948:+15442 | Msa1440060:CDS |
| GAAGTCGAAGTCGTCTTTCA+TGG | 0.449885 | tig0028948:-12894 | None:intergenic |
| CTACTTTCAATCGAATCCTA+TGG | 0.456534 | tig0028948:-15678 | None:intergenic |
| TATGTGTTAGACTTGATTCC+TGG | 0.457640 | tig0028948:+15535 | Msa1440060:CDS |
| AAGAAGAAGCTTCTCAAAGA+AGG | 0.467998 | tig0028948:+12983 | Msa1440060:CDS |
| TGGGTCTAATATAGGTGAAA+AGG | 0.473433 | tig0028948:+15813 | Msa1440060:CDS |
| GTTTGATTCTAGCAGAGATA+GGG | 0.475863 | tig0028948:+13147 | Msa1440060:CDS |
| TAGGCAGATGGAAGGTGATA+AGG | 0.476180 | tig0028948:-13351 | None:intergenic |
| CTCAACACCATTGTTGCCTA+CGG | 0.480015 | tig0028948:+15646 | Msa1440060:CDS |
| GCAATAGGATTACCTGAACT+TGG | 0.485967 | tig0028948:-15397 | None:intergenic |
| ATCTATTATTATTCTTGAAG+AGG | 0.490271 | tig0028948:+13373 | Msa1440060:CDS |
| GTGAAAAGGTGTTTATTCCA+AGG | 0.504306 | tig0028948:+15827 | Msa1440060:CDS |
| TGCCTTCGTTTAAACTTGGA+CGG | 0.507384 | tig0028948:-15880 | None:intergenic |
| GACTTCGACTTCGCCGGTGC+CGG | 0.516399 | tig0028948:+12905 | Msa1440060:CDS |
| AATGAAATTAAAAGCATGGC+AGG | 0.519602 | tig0028948:+13715 | Msa1440060:CDS |
| CCTACGGATTGCCAAACCAT+AGG | 0.521168 | tig0028948:+15662 | Msa1440060:CDS |
| AATTGGATTATCGCCGGCAC+CGG | 0.525961 | tig0028948:-12918 | None:intergenic |
| CAAAATTTGGGCTTATGTAA+CGG | 0.527652 | tig0028948:+15733 | Msa1440060:CDS |
| TTCAATTTCACTCTTGGACA+AGG | 0.538952 | tig0028948:+13178 | Msa1440060:CDS |
| CATAGGATTCGATTGAAAGT+AGG | 0.539405 | tig0028948:+15679 | Msa1440060:CDS |
| GTCAAATGAAATTAAAAGCA+TGG | 0.545516 | tig0028948:+13711 | Msa1440060:CDS |
| AGATTGATTATTACAAAGAT+GGG | 0.546305 | tig0028948:+15760 | Msa1440060:CDS |
| TCGAGGGTTACTTCGAGGGA+TGG | 0.549125 | tig0028948:+16024 | Msa1440060:CDS |
| GATGGGTAAATTTGTGCTTG+AGG | 0.550283 | tig0028948:+15777 | Msa1440060:CDS |
| GAGTACCTGTGATGTTATTG+AGG | 0.552635 | tig0028948:+15701 | Msa1440060:CDS |
| AGTCTAGTGCGTCACCGCCT+AGG | 0.557393 | tig0028948:-15603 | None:intergenic |
| AATTGTACGTCGCAGTATCG+AGG | 0.559466 | tig0028948:+16007 | Msa1440060:CDS |
| CAGTATCGAGGGTTACTTCG+AGG | 0.568304 | tig0028948:+16019 | Msa1440060:CDS |
| AATAATAATAGATAGGCAGA+TGG | 0.568838 | tig0028948:-13363 | None:intergenic |
| CTTGAGAATTGGATTATCGC+CGG | 0.576084 | tig0028948:-12924 | None:intergenic |
| TGGCAATCCGTAGGCAACAA+TGG | 0.580673 | tig0028948:-15653 | None:intergenic |
| TTGGAATAAGCAAGTCGCAC+GGG | 0.580905 | tig0028948:-15378 | None:intergenic |
| TTTGATTCTAGCAGAGATAG+GGG | 0.593989 | tig0028948:+13148 | Msa1440060:CDS |
| ATTGTACGTCGCAGTATCGA+GGG | 0.596952 | tig0028948:+16008 | Msa1440060:CDS |
| ATGGTCCTCAATAACATCAC+AGG | 0.600653 | tig0028948:-15706 | None:intergenic |
| AAAGACGACTTCGACTTCGC+CGG | 0.605504 | tig0028948:+12899 | Msa1440060:CDS |
| GACGGAATTCTAGTATCAGA+CGG | 0.605881 | tig0028948:-15862 | None:intergenic |
| GACGGTTCTAGCGATAACCT+TGG | 0.611697 | tig0028948:-15844 | None:intergenic |
| AAGCTTCTCAAAGAAGGTGA+AGG | 0.613170 | tig0028948:+12989 | Msa1440060:CDS |
| CGGCGATAATCCAATTCTCA+AGG | 0.616014 | tig0028948:+12925 | Msa1440060:CDS |
| AGTATCGAGGGTTACTTCGA+GGG | 0.620591 | tig0028948:+16020 | Msa1440060:CDS |
| TGCCTGATAATAGTACGATG+TGG | 0.623695 | tig0028948:-13749 | None:intergenic |
| ATAATAGATAGGCAGATGGA+AGG | 0.627317 | tig0028948:-13359 | None:intergenic |
| TTCCGTCCAAGTTTAAACGA+AGG | 0.627501 | tig0028948:+15878 | Msa1440060:CDS |
| AATAGTCATTGCAAATGAGA+CGG | 0.630026 | tig0028948:-15914 | None:intergenic |
| CCTATGGTTTGGCAATCCGT+AGG | 0.635128 | tig0028948:-15662 | None:intergenic |
| TTGAGGCAGAGATAATATCT+GGG | 0.637426 | tig0028948:+15794 | Msa1440060:CDS |
| TACTAATGTGACATCGAATG+TGG | 0.638564 | tig0028948:+16083 | Msa1440060:CDS |
| ATGACTATTAACAAGAGTCA+GGG | 0.638649 | tig0028948:+15928 | Msa1440060:CDS |
| GCCTGATAATAGTACGATGT+GGG | 0.647015 | tig0028948:-13748 | None:intergenic |
| CTTGGAATAAGCAAGTCGCA+CGG | 0.658446 | tig0028948:-15379 | None:intergenic |
| TGTTGAGAAATTCAGGCGTG+TGG | 0.667687 | tig0028948:-15630 | None:intergenic |
| ATTGCAAATGAGACGGACAA+CGG | 0.675963 | tig0028948:-15907 | None:intergenic |
| GTTAGACTTGATTCCTGGTG+AGG | 0.676404 | tig0028948:+15540 | Msa1440060:CDS |
| AAAGATGTTGATCAATGACG+AGG | 0.692006 | tig0028948:+16050 | Msa1440060:CDS |
| GATAATCCAATTCTCAAGGT+CGG | 0.697498 | tig0028948:+12929 | Msa1440060:CDS |
| ATGTTGATCAATGACGAGGA+CGG | 0.706081 | tig0028948:+16054 | Msa1440060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTGTTATTTTAAT+TGG | + | tig0028948:13225-13244 | Msa1440060:intron | 10.0% |
| !!! | ATGTTTTTTTAAAAATAGTT+TGG | + | tig0028948:13892-13911 | Msa1440060:intron | 10.0% |
| !!! | TTTAAATGAAAAATTTTAAC+GGG | + | tig0028948:15160-15179 | Msa1440060:intron | 10.0% |
| !!! | TATGATAAAAATGTATTTTA+GGG | - | tig0028948:15294-15313 | None:intergenic | 10.0% |
| !!! | ATATGATAAAAATGTATTTT+AGG | - | tig0028948:15295-15314 | None:intergenic | 10.0% |
| !! | AAATCAAACATAGAAATTAA+CGG | - | tig0028948:13253-13272 | None:intergenic | 15.0% |
| !!! | TTAATTTCTATGTTTGATTT+AGG | + | tig0028948:13253-13272 | Msa1440060:intron | 15.0% |
| !!! | ACTAATTTTATAGTGTTTTT+TGG | + | tig0028948:14519-14538 | Msa1440060:intron | 15.0% |
| !! | GTAACACATATATATATATT+TGG | + | tig0028948:14907-14926 | Msa1440060:intron | 15.0% |
| !! | TTTGATAAAAATTTGACATA+AGG | + | tig0028948:15220-15239 | Msa1440060:intron | 15.0% |
| !! | TGATAAAAATGTATTAGATT+AGG | - | tig0028948:15265-15284 | None:intergenic | 15.0% |
| !! | CTTCAAGAATAATAATAGAT+AGG | - | tig0028948:13373-13392 | None:intergenic | 20.0% |
| !! | ATCTATTATTATTCTTGAAG+AGG | + | tig0028948:13373-13392 | Msa1440060:CDS | 20.0% |
| !!! | TCTTTTATTTTCTTCACAAA+TGG | - | tig0028948:13615-13634 | None:intergenic | 20.0% |
| !!! | TTATTTTGTGAGTAAAAGTT+TGG | + | tig0028948:14434-14453 | Msa1440060:intron | 20.0% |
| !!! | ATAAGTGATCAATTAAGTTT+TGG | + | tig0028948:14481-14500 | Msa1440060:intron | 20.0% |
| !!! | TAAATTCTAGAATATAACGT+AGG | + | tig0028948:14687-14706 | Msa1440060:intron | 20.0% |
| !!! | CTTATTTGACAACTTTTTAT+CGG | - | tig0028948:15124-15143 | None:intergenic | 20.0% |
| !! | AAGATTGATTATTACAAAGA+TGG | + | tig0028948:15759-15778 | Msa1440060:CDS | 20.0% |
| !! | AGATTGATTATTACAAAGAT+GGG | + | tig0028948:15760-15779 | Msa1440060:CDS | 20.0% |
| ! | TTATGTGTAGTTCATTATAC+TGG | + | tig0028948:13103-13122 | Msa1440060:intron | 25.0% |
| !! | TGTTTGATTTAGGTTATGTT+TGG | + | tig0028948:13263-13282 | Msa1440060:intron | 25.0% |
| ! | AATAATAATAGATAGGCAGA+TGG | - | tig0028948:13366-13385 | None:intergenic | 25.0% |
| !!! | GAGGTAAATTTTTAAAAGTC+AGG | + | tig0028948:13392-13411 | Msa1440060:intron | 25.0% |
| ! | TGTCATCAATAACATATTGT+TGG | + | tig0028948:13426-13445 | Msa1440060:intron | 25.0% |
| ! | GATTTCAAACAATAAAAAGC+AGG | + | tig0028948:13463-13482 | Msa1440060:intron | 25.0% |
| !! | CCTTTAATTTCCTCATAATA+GGG | - | tig0028948:13555-13574 | None:intergenic | 25.0% |
| !! | ACCTTTAATTTCCTCATAAT+AGG | - | tig0028948:13556-13575 | None:intergenic | 25.0% |
| ! | GTCAAATGAAATTAAAAGCA+TGG | + | tig0028948:13711-13730 | Msa1440060:CDS | 25.0% |
| !!! | CTACATATGGTTGTTTTAAT+TGG | + | tig0028948:13818-13837 | Msa1440060:intron | 25.0% |
| ! | AAAAAACACAGTATTTATGC+AGG | - | tig0028948:14008-14027 | None:intergenic | 25.0% |
| ! | CATTTACTGATAACTACAAA+AGG | - | tig0028948:14103-14122 | None:intergenic | 25.0% |
| ! | TAGTTATCAGTAAATGAGAT+AGG | + | tig0028948:14107-14126 | Msa1440060:intron | 25.0% |
| ! | ACACATTATAAAGAGACAAA+AGG | - | tig0028948:14256-14275 | None:intergenic | 25.0% |
| !!! | TATAGTGTTTTTTGGTGAAA+TGG | + | tig0028948:14527-14546 | Msa1440060:intron | 25.0% |
| ! | AACATAAAAGAACTATCAGA+AGG | - | tig0028948:14884-14903 | None:intergenic | 25.0% |
| ! | CAATGTTTCCTAACAAATTT+GGG | - | tig0028948:15444-15463 | None:intergenic | 25.0% |
| !! | TTTTCAAAGTAGAGCAATAT+TGG | + | tig0028948:15477-15496 | Msa1440060:CDS | 25.0% |
| ! | TGATCAACAATTGTATTCTT+TGG | - | tig0028948:15505-15524 | None:intergenic | 25.0% |
| ! | AAAGAATACAATTGTTGATC+AGG | + | tig0028948:15504-15523 | Msa1440060:CDS | 25.0% |
| ! | ATAATATCTGGGTCTAATAT+AGG | + | tig0028948:15805-15824 | Msa1440060:CDS | 25.0% |
| AATCAACGAAGAAAGAACAT+AGG | - | tig0028948:13041-13060 | None:intergenic | 30.0% | |
| ACTACTTTCAATTTCACTCT+TGG | + | tig0028948:13172-13191 | Msa1440060:CDS | 30.0% | |
| !! | TGAAAAGTGCTTATCATATC+AGG | + | tig0028948:13317-13336 | Msa1440060:intron | 30.0% |
| ! | CATTTGCTGATAACTACAAA+AGG | - | tig0028948:13523-13542 | None:intergenic | 30.0% |
| TAGTTATCAGCAAATGAGAT+AGG | + | tig0028948:13527-13546 | Msa1440060:intron | 30.0% | |
| CCCTATTATGAGGAAATTAA+AGG | + | tig0028948:13552-13571 | Msa1440060:intron | 30.0% | |
| ! | AATGAAATTAAAAGCATGGC+AGG | + | tig0028948:13715-13734 | Msa1440060:CDS | 30.0% |
| CTTTAACTCGATGTTTGTAT+TGG | + | tig0028948:13862-13881 | Msa1440060:intron | 30.0% | |
| !!! | TAGCTTTGGTTTGTTTTCTT+TGG | + | tig0028948:13929-13948 | Msa1440060:intron | 30.0% |
| !!! | TTGGTTTGTTTTCTTTGGAA+TGG | + | tig0028948:13934-13953 | Msa1440060:intron | 30.0% |
| !!! | TAGCTTTGGTTTGTTTTCTT+TGG | + | tig0028948:13929-13948 | Msa1440060:intron | 30.0% |
| !!! | TTGGTTTGTTTTCTTTGGAA+TGG | + | tig0028948:13934-13953 | Msa1440060:intron | 30.0% |
| GAAAATCAACGCATAGTAAA+TGG | + | tig0028948:14373-14392 | Msa1440060:intron | 30.0% | |
| ! | AAACTAAGCTCATAGCTTTT+TGG | + | tig0028948:14588-14607 | Msa1440060:intron | 30.0% |
| ! | AACTAAGCTCATAGCTTTTT+GGG | + | tig0028948:14589-14608 | Msa1440060:intron | 30.0% |
| !! | CATCTTTGTTGATTTAAGCA+TGG | + | tig0028948:14729-14748 | Msa1440060:intron | 30.0% |
| !!! | GGTTTTGAAGAATTGAAACA+TGG | - | tig0028948:14855-14874 | None:intergenic | 30.0% |
| ! | AAGAACTATCAGAAGGTATA+GGG | - | tig0028948:14877-14896 | None:intergenic | 30.0% |
| ! | AAAGAACTATCAGAAGGTAT+AGG | - | tig0028948:14878-14897 | None:intergenic | 30.0% |
| ! | CGTAACAAATTTTGTAGCAA+TGG | + | tig0028948:14963-14982 | Msa1440060:intron | 30.0% |
| !!! | GTTCATGCTTTTTCTTATCA+TGG | + | tig0028948:15033-15052 | Msa1440060:intron | 30.0% |
| TAGCAAACAAAACATAAGCA+CGG | - | tig0028948:15094-15113 | None:intergenic | 30.0% | |
| !!! | GCTTATGTTTTGTTTGCTAT+TGG | + | tig0028948:15095-15114 | Msa1440060:intron | 30.0% |
| !!! | TTATTCGTGCATGTTTTAGT+CGG | + | tig0028948:15351-15370 | Msa1440060:intron | 30.0% |
| CTTTCAACAATAGATGCAAT+AGG | - | tig0028948:15415-15434 | None:intergenic | 30.0% | |
| CCAATGTTTCCTAACAAATT+TGG | - | tig0028948:15445-15464 | None:intergenic | 30.0% | |
| !! | CCAAATTTGTTAGGAAACAT+TGG | + | tig0028948:15442-15461 | Msa1440060:CDS | 30.0% |
| ! | AAATAAATTTTCTCCTCACC+AGG | - | tig0028948:15556-15575 | None:intergenic | 30.0% |
| ACACCTTATCATAAAAACCT+AGG | + | tig0028948:15586-15605 | Msa1440060:CDS | 30.0% | |
| AGGACCATAGATCAAAATTT+GGG | + | tig0028948:15721-15740 | Msa1440060:CDS | 30.0% | |
| !! | TAAGCCCAAATTTTGATCTA+TGG | - | tig0028948:15728-15747 | None:intergenic | 30.0% |
| CAAAATTTGGGCTTATGTAA+CGG | + | tig0028948:15733-15752 | Msa1440060:CDS | 30.0% | |
| AATAGTCATTGCAAATGAGA+CGG | - | tig0028948:15917-15936 | None:intergenic | 30.0% | |
| AATGACTATTAACAAGAGTC+AGG | + | tig0028948:15927-15946 | Msa1440060:CDS | 30.0% | |
| ATGACTATTAACAAGAGTCA+GGG | + | tig0028948:15928-15947 | Msa1440060:CDS | 30.0% | |
| AATTGTCCATGTGAAAAAAC+AGG | - | tig0028948:15991-16010 | None:intergenic | 30.0% | |
| GATAATCCAATTCTCAAGGT+CGG | + | tig0028948:12929-12948 | Msa1440060:CDS | 35.0% | |
| GTCGGTGAAAAAAAGGAAAT+CGG | + | tig0028948:12947-12966 | Msa1440060:CDS | 35.0% | |
| AAAAAGGAAATCGGAAAGCA+AGG | + | tig0028948:12956-12975 | Msa1440060:CDS | 35.0% | |
| AAGAAGAAGCTTCTCAAAGA+AGG | + | tig0028948:12983-13002 | Msa1440060:CDS | 35.0% | |
| AGTTTGATTCTAGCAGAGAT+AGG | + | tig0028948:13146-13165 | Msa1440060:CDS | 35.0% | |
| GTTTGATTCTAGCAGAGATA+GGG | + | tig0028948:13147-13166 | Msa1440060:CDS | 35.0% | |
| TTTGATTCTAGCAGAGATAG+GGG | + | tig0028948:13148-13167 | Msa1440060:CDS | 35.0% | |
| TTCAATTTCACTCTTGGACA+AGG | + | tig0028948:13178-13197 | Msa1440060:CDS | 35.0% | |
| ATAATAGATAGGCAGATGGA+AGG | - | tig0028948:13362-13381 | None:intergenic | 35.0% | |
| !! | GCTGCTTACTTTTGATATTG+TGG | + | tig0028948:13641-13660 | Msa1440060:intron | 35.0% |
| CATATGTAGACACTGTCATA+GGG | - | tig0028948:13807-13826 | None:intergenic | 35.0% | |
| AATGGTTTCTTATGCTCTCT+TGG | + | tig0028948:13952-13971 | Msa1440060:intron | 35.0% | |
| ! | GGAGCACTAAAAGAAACAAA+AGG | - | tig0028948:13987-14006 | None:intergenic | 35.0% |
| GATTTCAAACAACAAGAAGC+AGG | + | tig0028948:14043-14062 | Msa1440060:intron | 35.0% | |
| ATGAGATAGGATCCCTATTA+TGG | + | tig0028948:13540-13559 | Msa1440060:intron | 35.0% | |
| AATGGTTTCTTATGCTCTCT+TGG | + | tig0028948:13952-13971 | Msa1440060:intron | 35.0% | |
| ! | GGAGCACTAAAAGAAACAAA+AGG | - | tig0028948:13987-14006 | None:intergenic | 35.0% |
| AGGAAACACAGTAGTTATGT+AGG | - | tig0028948:14236-14255 | None:intergenic | 35.0% | |
| ! | GTACAAAACTGACTTTGGTA+AGG | - | tig0028948:14315-14334 | None:intergenic | 35.0% |
| ! | CTAAGGTACAAAACTGACTT+TGG | - | tig0028948:14320-14339 | None:intergenic | 35.0% |
| !! | AAGTCAGTTTTGTACCTTAG+TGG | + | tig0028948:14320-14339 | Msa1440060:intron | 35.0% |
| GCATAGTAAATGGCAATTGA+AGG | + | tig0028948:14383-14402 | Msa1440060:intron | 35.0% | |
| !! | AGCTTTTTGGGAAGATATTG+TGG | + | tig0028948:14601-14620 | Msa1440060:intron | 35.0% |
| TGGTAGCATATTTCAGTCAT+TGG | + | tig0028948:14621-14640 | Msa1440060:intron | 35.0% | |
| TTAAGCATGGTCTGTTTGTA+AGG | + | tig0028948:14742-14761 | Msa1440060:intron | 35.0% | |
| !!! | TGGAATTGGTTTTGCTAACA+AGG | + | tig0028948:14767-14786 | Msa1440060:intron | 35.0% |
| GAAGAATTGAAACATGGTAG+AGG | - | tig0028948:14849-14868 | None:intergenic | 35.0% | |
| ! | AGAACTATCAGAAGGTATAG+GGG | - | tig0028948:14876-14895 | None:intergenic | 35.0% |
| TAACTAAGTCATGTCGATGA+AGG | + | tig0028948:15189-15208 | Msa1440060:intron | 35.0% | |
| ! | AGCACTTACCCAAATTTGTT+AGG | + | tig0028948:15433-15452 | Msa1440060:CDS | 35.0% |
| TATGTGTTAGACTTGATTCC+TGG | + | tig0028948:15535-15554 | Msa1440060:CDS | 35.0% | |
| CCTTATCATAAAAACCTAGG+CGG | + | tig0028948:15589-15608 | Msa1440060:CDS | 35.0% | |
| ! | ACAATGGTGTTGAGAAATTC+AGG | - | tig0028948:15640-15659 | None:intergenic | 35.0% |
| TTCAATCGAATCCTATGGTT+TGG | - | tig0028948:15676-15695 | None:intergenic | 35.0% | |
| CTACTTTCAATCGAATCCTA+TGG | - | tig0028948:15681-15700 | None:intergenic | 35.0% | |
| CATAGGATTCGATTGAAAGT+AGG | + | tig0028948:15679-15698 | Msa1440060:CDS | 35.0% | |
| GAGGACCATAGATCAAAATT+TGG | + | tig0028948:15720-15739 | Msa1440060:CDS | 35.0% | |
| TTGAGGCAGAGATAATATCT+GGG | + | tig0028948:15794-15813 | Msa1440060:CDS | 35.0% | |
| TGGGTCTAATATAGGTGAAA+AGG | + | tig0028948:15813-15832 | Msa1440060:CDS | 35.0% | |
| !! | GTGAAAAGGTGTTTATTCCA+AGG | + | tig0028948:15827-15846 | Msa1440060:CDS | 35.0% |
| AAACTGCCTTCGTTTAAACT+TGG | - | tig0028948:15887-15906 | None:intergenic | 35.0% | |
| ! | GGTCAGTCTTTGAAAAATGT+TGG | + | tig0028948:15949-15968 | Msa1440060:CDS | 35.0% |
| AAAGATGTTGATCAATGACG+AGG | + | tig0028948:16050-16069 | Msa1440060:CDS | 35.0% | |
| TACTAATGTGACATCGAATG+TGG | + | tig0028948:16083-16102 | Msa1440060:CDS | 35.0% | |
| CTTGAGAATTGGATTATCGC+CGG | - | tig0028948:12927-12946 | None:intergenic | 40.0% | |
| ! | TTTTCACCGACCTTGAGAAT+TGG | - | tig0028948:12938-12957 | None:intergenic | 40.0% |
| TCTCAAGGTCGGTGAAAAAA+AGG | + | tig0028948:12940-12959 | Msa1440060:CDS | 40.0% | |
| AAGCTTCTCAAAGAAGGTGA+AGG | + | tig0028948:12989-13008 | Msa1440060:CDS | 40.0% | |
| TTCTCAAAGAAGGTGAAGGT+TGG | + | tig0028948:12993-13012 | Msa1440060:intron | 40.0% | |
| TCTCAAAGAAGGTGAAGGTT+GGG | + | tig0028948:12994-13013 | Msa1440060:intron | 40.0% | |
| TATACTGGAACGTTGCTTGA+TGG | + | tig0028948:13118-13137 | Msa1440060:CDS | 40.0% | |
| GAGATAGGATCCCTATTATG+AGG | + | tig0028948:13542-13561 | Msa1440060:intron | 40.0% | |
| TCCCACATCGTACTATTATC+AGG | + | tig0028948:13747-13766 | Msa1440060:CDS | 40.0% | |
| GCCTGATAATAGTACGATGT+GGG | - | tig0028948:13751-13770 | None:intergenic | 40.0% | |
| TGCCTGATAATAGTACGATG+TGG | - | tig0028948:13752-13771 | None:intergenic | 40.0% | |
| TCGTACTATTATCAGGCAAG+TGG | + | tig0028948:13754-13773 | Msa1440060:intron | 40.0% | |
| CGTACTATTATCAGGCAAGT+GGG | + | tig0028948:13755-13774 | Msa1440060:intron | 40.0% | |
| GTGGGTACTAGAGAATTCAT+AGG | + | tig0028948:13773-13792 | Msa1440060:intron | 40.0% | |
| CCATATGTAGACACTGTCAT+AGG | - | tig0028948:13808-13827 | None:intergenic | 40.0% | |
| CCTATGACAGTGTCTACATA+TGG | + | tig0028948:13805-13824 | Msa1440060:intron | 40.0% | |
| AACCAAAGCTAACTACACTG+AGG | - | tig0028948:13920-13939 | None:intergenic | 40.0% | |
| TACACTGAGGAGCCATAATA+GGG | - | tig0028948:14135-14154 | None:intergenic | 40.0% | |
| AACCAAAGCTAACTACACTG+AGG | - | tig0028948:13920-13939 | None:intergenic | 40.0% | |
| TCGCAACAACTAATCCACTA+AGG | - | tig0028948:14337-14356 | None:intergenic | 40.0% | |
| CTGTTTGTAAGGCTTGGAAT+TGG | + | tig0028948:14753-14772 | Msa1440060:intron | 40.0% | |
| ! | GACTTGCTTATTCCAAGTTC+AGG | + | tig0028948:15385-15404 | Msa1440060:CDS | 40.0% |
| GCAATAGGATTACCTGAACT+TGG | - | tig0028948:15400-15419 | None:intergenic | 40.0% | |
| ! | CCGCCTAGGTTTTTATGATA+AGG | - | tig0028948:15592-15611 | None:intergenic | 40.0% |
| GAGTACCTGTGATGTTATTG+AGG | + | tig0028948:15701-15720 | Msa1440060:CDS | 40.0% | |
| ATGGTCCTCAATAACATCAC+AGG | - | tig0028948:15709-15728 | None:intergenic | 40.0% | |
| GATGGGTAAATTTGTGCTTG+AGG | + | tig0028948:15777-15796 | Msa1440060:CDS | 40.0% | |
| CTTGAGGCAGAGATAATATC+TGG | + | tig0028948:15793-15812 | Msa1440060:CDS | 40.0% | |
| GACGGAATTCTAGTATCAGA+CGG | - | tig0028948:15865-15884 | None:intergenic | 40.0% | |
| TTCCGTCCAAGTTTAAACGA+AGG | + | tig0028948:15878-15897 | Msa1440060:CDS | 40.0% | |
| TGCCTTCGTTTAAACTTGGA+CGG | - | tig0028948:15883-15902 | None:intergenic | 40.0% | |
| ATTGCAAATGAGACGGACAA+CGG | - | tig0028948:15910-15929 | None:intergenic | 40.0% | |
| CCATGTGAAAAAACAGGAGA+CGG | - | tig0028948:15985-16004 | None:intergenic | 40.0% | |
| ATGTTGATCAATGACGAGGA+CGG | + | tig0028948:16054-16073 | Msa1440060:CDS | 40.0% | |
| CGGCGATAATCCAATTCTCA+AGG | + | tig0028948:12925-12944 | Msa1440060:CDS | 45.0% | |
| CTTGGACAAGGTTAGTGCAT+TGG | + | tig0028948:13190-13209 | Msa1440060:intron | 45.0% | |
| AGGTTAGTGCATTGGAACGA+CGG | + | tig0028948:13198-13217 | Msa1440060:intron | 45.0% | |
| TAGGCAGATGGAAGGTGATA+AGG | - | tig0028948:13354-13373 | None:intergenic | 45.0% | |
| ! | CTCCTCAGTGTAGTTAGCTT+TGG | + | tig0028948:13915-13934 | Msa1440060:intron | 45.0% |
| CTACACTGAGGAGCCATAAT+AGG | - | tig0028948:14136-14155 | None:intergenic | 45.0% | |
| ! | CTCCTCAGTGTAGTTAGCTT+TGG | + | tig0028948:13915-13934 | Msa1440060:intron | 45.0% |
| TTGTTGCGAGTAGCATGTCA+TGG | + | tig0028948:14348-14367 | Msa1440060:intron | 45.0% | |
| TTTCAGTCATTGGCCATAGC+AGG | + | tig0028948:14631-14650 | Msa1440060:intron | 45.0% | |
| AAAACCAGCTGAACCTGCTA+TGG | - | tig0028948:14647-14666 | None:intergenic | 45.0% | |
| CATGGTCTGTTTGTAAGGCT+TGG | + | tig0028948:14747-14766 | Msa1440060:intron | 45.0% | |
| CGATAGAAGCTGACATAGTG+AGG | - | tig0028948:14945-14964 | None:intergenic | 45.0% | |
| TTGGAATAAGCAAGTCGCAC+GGG | - | tig0028948:15381-15400 | None:intergenic | 45.0% | |
| CTTGGAATAAGCAAGTCGCA+CGG | - | tig0028948:15382-15401 | None:intergenic | 45.0% | |
| GTTAGACTTGATTCCTGGTG+AGG | + | tig0028948:15540-15559 | Msa1440060:CDS | 45.0% | |
| TGTTGAGAAATTCAGGCGTG+TGG | - | tig0028948:15633-15652 | None:intergenic | 45.0% | |
| CTCAACACCATTGTTGCCTA+CGG | + | tig0028948:15646-15665 | Msa1440060:CDS | 45.0% | |
| !!! | CCGTCTCCTGTTTTTTCACA+TGG | + | tig0028948:15982-16001 | Msa1440060:CDS | 45.0% |
| AATTGTACGTCGCAGTATCG+AGG | + | tig0028948:16007-16026 | Msa1440060:CDS | 45.0% | |
| ! | ATTGTACGTCGCAGTATCGA+GGG | + | tig0028948:16008-16027 | Msa1440060:CDS | 45.0% |
| ! | AGTATCGAGGGTTACTTCGA+GGG | + | tig0028948:16020-16039 | Msa1440060:CDS | 45.0% |
| !!! | ATTTAAATGAAAAATTTTAA+CGG | + | tig0028948:15159-15178 | Msa1440060:intron | 5.0% |
| AAAGACGACTTCGACTTCGC+CGG | + | tig0028948:12899-12918 | Msa1440060:CDS | 50.0% | |
| AATTGGATTATCGCCGGCAC+CGG | - | tig0028948:12921-12940 | None:intergenic | 50.0% | |
| GGTTGGGATGCTCATGATGT+TGG | + | tig0028948:13010-13029 | Msa1440060:intron | 50.0% | |
| TGGCAATCCGTAGGCAACAA+TGG | - | tig0028948:15656-15675 | None:intergenic | 50.0% | |
| ! | CCTATGGTTTGGCAATCCGT+AGG | - | tig0028948:15665-15684 | None:intergenic | 50.0% |
| ! | CCTACGGATTGCCAAACCAT+AGG | + | tig0028948:15662-15681 | Msa1440060:CDS | 50.0% |
| ! | GACGGTTCTAGCGATAACCT+TGG | - | tig0028948:15847-15866 | None:intergenic | 50.0% |
| ! | CAGTATCGAGGGTTACTTCG+AGG | + | tig0028948:16019-16038 | Msa1440060:CDS | 50.0% |
| TTGGCCATAGCAGGTTCAGC+TGG | + | tig0028948:14640-14659 | Msa1440060:intron | 55.0% | |
| TCGAGGGTTACTTCGAGGGA+TGG | + | tig0028948:16024-16043 | Msa1440060:CDS | 55.0% | |
| AGTCTAGTGCGTCACCGCCT+AGG | - | tig0028948:15606-15625 | None:intergenic | 60.0% | |
| GACTTCGACTTCGCCGGTGC+CGG | + | tig0028948:12905-12924 | Msa1440060:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028948 | gene | 12896 | 16134 | 12896 | ID=Msa1440060;Name=Msa1440060 |
| tig0028948 | mRNA | 12896 | 16134 | 12896 | ID=Msa1440060-mRNA-1;Parent=Msa1440060;Name=Msa1440060-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|0.2|1|1|5|0|365 |
| tig0028948 | exon | 12896 | 13010 | 12896 | ID=Msa1440060-mRNA-1:exon:12085;Parent=Msa1440060-mRNA-1 |
| tig0028948 | exon | 13113 | 13199 | 13113 | ID=Msa1440060-mRNA-1:exon:12086;Parent=Msa1440060-mRNA-1 |
| tig0028948 | exon | 13339 | 13394 | 13339 | ID=Msa1440060-mRNA-1:exon:12087;Parent=Msa1440060-mRNA-1 |
| tig0028948 | exon | 13698 | 13772 | 13698 | ID=Msa1440060-mRNA-1:exon:12088;Parent=Msa1440060-mRNA-1 |
| tig0028948 | exon | 15370 | 16134 | 15370 | ID=Msa1440060-mRNA-1:exon:12089;Parent=Msa1440060-mRNA-1 |
| tig0028948 | CDS | 12896 | 13010 | 12896 | ID=Msa1440060-mRNA-1:cds;Parent=Msa1440060-mRNA-1 |
| tig0028948 | CDS | 13113 | 13199 | 13113 | ID=Msa1440060-mRNA-1:cds;Parent=Msa1440060-mRNA-1 |
| tig0028948 | CDS | 13339 | 13394 | 13339 | ID=Msa1440060-mRNA-1:cds;Parent=Msa1440060-mRNA-1 |
| tig0028948 | CDS | 13698 | 13772 | 13698 | ID=Msa1440060-mRNA-1:cds;Parent=Msa1440060-mRNA-1 |
| tig0028948 | CDS | 15370 | 16134 | 15370 | ID=Msa1440060-mRNA-1:cds;Parent=Msa1440060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
