Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137850 | XP_024630833.1 | 94.862 | 253 | 13 | 0 | 113 | 365 | 1335 | 1587 | 4.54e-157 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137850 | sp|Q9FJL3|FKB65_ARATH | 63.889 | 72 | 14 | 1 | 10 | 69 | 29 | 100 | 2.18e-17 | 87.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137850 | A0A396JP05 | 72.332 | 253 | 70 | 0 | 113 | 365 | 119 | 371 | 4.93e-131 | 389 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0672690 | Msa1137850 | 0.803487 | 3.405993e-49 | -8.615850e-47 |
| Msa0676080 | Msa1137850 | 0.801450 | 8.952871e-49 | -8.615850e-47 |
| Msa0813400 | Msa1137850 | 0.801909 | 7.207347e-49 | -8.615850e-47 |
| Msa1015730 | Msa1137850 | 0.804398 | 2.201543e-49 | -8.615850e-47 |
| Msa1015790 | Msa1137850 | 0.805655 | 1.201863e-49 | -8.615850e-47 |
| Msa1015800 | Msa1137850 | 0.804475 | 2.122578e-49 | -8.615850e-47 |
| Msa1015810 | Msa1137850 | 0.801210 | 1.002474e-48 | -8.615850e-47 |
| Msa1071110 | Msa1137850 | 0.818878 | 1.557261e-52 | -8.615850e-47 |
| Msa1081590 | Msa1137850 | 0.803588 | 3.245447e-49 | -8.615850e-47 |
| Msa0266720 | Msa1137850 | 0.801723 | 7.871774e-49 | -8.615850e-47 |
| Msa1137850 | Msa1187950 | 0.801426 | 9.054368e-49 | -8.615850e-47 |
| Msa1137850 | Msa1440060 | 0.911083 | 9.080092e-83 | -8.615850e-47 |
| Msa1137850 | Msa1451620 | -0.822330 | 2.509041e-53 | -8.615850e-47 |
| Msa0931520 | Msa1137850 | 0.803472 | 3.430654e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137850 | MtrunA17_Chr1g0173691 | 72.332 | 253 | 70 | 0 | 113 | 365 | 119 | 371 | 9.49e-135 | 389 |
| Msa1137850 | MtrunA17_Chr7g0248821 | 75.127 | 197 | 49 | 0 | 169 | 365 | 1 | 197 | 9.16e-105 | 306 |
| Msa1137850 | MtrunA17_Chr1g0206511 | 72.727 | 198 | 54 | 0 | 168 | 365 | 1 | 198 | 4.65e-101 | 296 |
| Msa1137850 | MtrunA17_Chr7g0269671 | 69.014 | 213 | 66 | 0 | 113 | 325 | 120 | 332 | 7.85e-101 | 301 |
| Msa1137850 | MtrunA17_Chr3g0101861 | 56.522 | 253 | 110 | 0 | 113 | 365 | 213 | 465 | 1.30e-96 | 295 |
| Msa1137850 | MtrunA17_Chr3g0133361 | 56.250 | 256 | 106 | 2 | 113 | 365 | 41 | 293 | 1.64e-95 | 286 |
| Msa1137850 | MtrunA17_Chr6g0472831 | 55.399 | 213 | 91 | 3 | 113 | 323 | 41 | 251 | 7.32e-75 | 232 |
| Msa1137850 | MtrunA17_Chr3g0100401 | 69.291 | 127 | 39 | 0 | 168 | 294 | 1 | 127 | 1.87e-62 | 196 |
| Msa1137850 | MtrunA17_Chr3g0139511 | 75.676 | 74 | 18 | 0 | 292 | 365 | 107 | 180 | 1.44e-32 | 120 |
| Msa1137850 | MtrunA17_Chr8g0339141 | 78.750 | 80 | 5 | 1 | 1 | 68 | 13 | 92 | 3.06e-22 | 98.2 |
| Msa1137850 | MtrunA17_Chr8g0377771 | 57.778 | 90 | 16 | 2 | 1 | 68 | 1 | 90 | 5.97e-21 | 94.4 |
| Msa1137850 | MtrunA17_Chr3g0129801 | 77.083 | 48 | 11 | 0 | 268 | 315 | 7 | 54 | 7.94e-19 | 80.1 |
| Msa1137850 | MtrunA17_Chr2g0307571 | 61.404 | 57 | 22 | 0 | 248 | 304 | 1 | 57 | 2.66e-16 | 72.4 |
| Msa1137850 | MtrunA17_Chr7g0234801 | 54.651 | 86 | 21 | 2 | 1 | 68 | 1 | 86 | 2.18e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1137850 | AT3G51690.1 | 45.098 | 255 | 133 | 3 | 113 | 365 | 82 | 331 | 3.05e-68 | 218 |
| Msa1137850 | AT3G51700.1 | 46.586 | 249 | 127 | 3 | 117 | 362 | 87 | 332 | 9.43e-66 | 212 |
| Msa1137850 | AT5G28780.1 | 41.732 | 254 | 144 | 3 | 113 | 365 | 80 | 330 | 3.04e-60 | 197 |
| Msa1137850 | AT5G48570.1 | 63.889 | 72 | 14 | 1 | 10 | 69 | 29 | 100 | 2.21e-18 | 87.0 |
| Msa1137850 | AT3G25230.1 | 69.697 | 66 | 7 | 2 | 15 | 68 | 27 | 91 | 5.79e-17 | 82.8 |
| Msa1137850 | AT3G25230.2 | 69.697 | 66 | 7 | 2 | 15 | 68 | 27 | 91 | 6.23e-17 | 82.4 |
Find 80 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATGTTTCCTAACAAATT+TGG | 0.087569 | 7_4:+6874697 | None:intergenic |
| GAGGACCATAGATCAAAATT+TGG | 0.204699 | 7_4:-6874419 | Msa1137850:CDS |
| TGATCAACAATTGTATTCTT+TGG | 0.265335 | 7_4:+6874637 | None:intergenic |
| CAATGTTTCCTAACAAATTT+GGG | 0.286373 | 7_4:+6874698 | None:intergenic |
| CTTGAGGCAGAGATAATATC+TGG | 0.311263 | 7_4:-6874346 | Msa1137850:CDS |
| TTATGTGTAGTTCATTATAC+TGG | 0.313269 | 7_4:-6877036 | Msa1137850:intron |
| ACTACTTTCAATTTCACTCT+TGG | 0.361943 | 7_4:-6876967 | Msa1137850:CDS |
| AGGACCATAGATCAAAATTT+GGG | 0.367590 | 7_4:-6874418 | Msa1137850:CDS |
| TTCAATCGAATCCTATGGTT+TGG | 0.369262 | 7_4:+6874466 | None:intergenic |
| ACAATGGTGTTGAGAAATTC+AGG | 0.378095 | 7_4:+6874502 | None:intergenic |
| AGCACTTACCCAAATTTGTT+AGG | 0.378715 | 7_4:-6874706 | Msa1137850:CDS |
| AGTTTGATTCTAGCAGAGAT+AGG | 0.388381 | 7_4:-6876993 | Msa1137850:CDS |
| TATACTGGAACGTTGCTTGA+TGG | 0.393092 | 7_4:-6877021 | Msa1137850:CDS |
| GACTTGCTTATTCCAAGTTC+AGG | 0.393967 | 7_4:-6874754 | Msa1137850:CDS |
| AAAGAATACAATTGTTGATC+AGG | 0.395362 | 7_4:-6874635 | Msa1137850:CDS |
| AAACCAAGTGCTACACATTA+CGG | 0.405179 | 7_4:+6874017 | None:intergenic |
| TCCCACATCGTACTATTATC+AGG | 0.413728 | 7_4:-6876392 | Msa1137850:CDS |
| CTTTCAACAATAGATGCAAT+AGG | 0.418780 | 7_4:+6874727 | None:intergenic |
| CTTCAAGAATAATAATAGAT+AGG | 0.425201 | 7_4:+6876769 | None:intergenic |
| AAGATTGATTATTACAAAGA+TGG | 0.426799 | 7_4:-6874380 | Msa1137850:CDS |
| ATAATATCTGGGTCTAATAT+AGG | 0.430195 | 7_4:-6874334 | Msa1137850:CDS |
| AAACTGCCTTCGTTTAAACT+TGG | 0.436534 | 7_4:+6874255 | None:intergenic |
| AATGACTATTAACAAGAGTC+AGG | 0.437464 | 7_4:-6874212 | Msa1137850:CDS |
| CCAAATTTGTTAGGAAACAT+TGG | 0.447300 | 7_4:-6874697 | Msa1137850:CDS |
| GAAGTCGAAGTCGTCTTTCA+TGG | 0.449885 | 7_4:+6877245 | None:intergenic |
| CTACTTTCAATCGAATCCTA+TGG | 0.456534 | 7_4:+6874461 | None:intergenic |
| TATGTGTTAGACTTGATTCC+TGG | 0.457640 | 7_4:-6874604 | Msa1137850:CDS |
| AAGAAGAAGCTTCTCAAAGA+AGG | 0.467998 | 7_4:-6877156 | Msa1137850:CDS |
| TGGGTCTAATATAGGTGAAA+AGG | 0.473433 | 7_4:-6874326 | Msa1137850:CDS |
| GTTTGATTCTAGCAGAGATA+GGG | 0.475863 | 7_4:-6876992 | Msa1137850:CDS |
| TAGGCAGATGGAAGGTGATA+AGG | 0.476180 | 7_4:+6876788 | None:intergenic |
| CTCAACACCATTGTTGCCTA+CGG | 0.480015 | 7_4:-6874493 | Msa1137850:CDS |
| GCAATAGGATTACCTGAACT+TGG | 0.485967 | 7_4:+6874742 | None:intergenic |
| ATCTATTATTATTCTTGAAG+AGG | 0.490271 | 7_4:-6876766 | Msa1137850:intron |
| GTGAAAAGGTGTTTATTCCA+AGG | 0.504306 | 7_4:-6874312 | Msa1137850:CDS |
| TGCCTTCGTTTAAACTTGGA+CGG | 0.507384 | 7_4:+6874259 | None:intergenic |
| GACTTCGACTTCGCCGGTGC+CGG | 0.516399 | 7_4:-6877234 | Msa1137850:CDS |
| AATGAAATTAAAAGCATGGC+AGG | 0.519602 | 7_4:-6876424 | Msa1137850:CDS |
| CCTACGGATTGCCAAACCAT+AGG | 0.521168 | 7_4:-6874477 | Msa1137850:CDS |
| AATTGGATTATCGCCGGCAC+CGG | 0.525961 | 7_4:+6877221 | None:intergenic |
| CAAAATTTGGGCTTATGTAA+CGG | 0.527652 | 7_4:-6874406 | Msa1137850:CDS |
| TTCAATTTCACTCTTGGACA+AGG | 0.538952 | 7_4:-6876961 | Msa1137850:intron |
| CATAGGATTCGATTGAAAGT+AGG | 0.539405 | 7_4:-6874460 | Msa1137850:CDS |
| GTCAAATGAAATTAAAAGCA+TGG | 0.545516 | 7_4:-6876428 | Msa1137850:CDS |
| AGATTGATTATTACAAAGAT+GGG | 0.546305 | 7_4:-6874379 | Msa1137850:CDS |
| TCGAGGGTTACTTCGAGGGA+TGG | 0.549125 | 7_4:-6874115 | Msa1137850:CDS |
| GATGGGTAAATTTGTGCTTG+AGG | 0.550283 | 7_4:-6874362 | Msa1137850:CDS |
| GAGTACCTGTGATGTTATTG+AGG | 0.552635 | 7_4:-6874438 | Msa1137850:CDS |
| AGTCTAGTGCGTCACCGCCT+AGG | 0.557393 | 7_4:+6874536 | None:intergenic |
| AATTGTACGTCGCAGTATCG+AGG | 0.559466 | 7_4:-6874132 | Msa1137850:CDS |
| CAGTATCGAGGGTTACTTCG+AGG | 0.568304 | 7_4:-6874120 | Msa1137850:CDS |
| AATAATAATAGATAGGCAGA+TGG | 0.568838 | 7_4:+6876776 | None:intergenic |
| CTTGAGAATTGGATTATCGC+CGG | 0.576084 | 7_4:+6877215 | None:intergenic |
| TGGCAATCCGTAGGCAACAA+TGG | 0.580673 | 7_4:+6874486 | None:intergenic |
| TTGGAATAAGCAAGTCGCAC+GGG | 0.580905 | 7_4:+6874761 | None:intergenic |
| TTTGATTCTAGCAGAGATAG+GGG | 0.593989 | 7_4:-6876991 | Msa1137850:CDS |
| ATTGTACGTCGCAGTATCGA+GGG | 0.596952 | 7_4:-6874131 | Msa1137850:CDS |
| ATGGTCCTCAATAACATCAC+AGG | 0.600653 | 7_4:+6874433 | None:intergenic |
| AAAGACGACTTCGACTTCGC+CGG | 0.605504 | 7_4:-6877240 | Msa1137850:CDS |
| GACGGAATTCTAGTATCAGA+CGG | 0.605881 | 7_4:+6874277 | None:intergenic |
| GACGGTTCTAGCGATAACCT+TGG | 0.611697 | 7_4:+6874295 | None:intergenic |
| AAGCTTCTCAAAGAAGGTGA+AGG | 0.613170 | 7_4:-6877150 | Msa1137850:intron |
| CGGCGATAATCCAATTCTCA+AGG | 0.616014 | 7_4:-6877214 | Msa1137850:CDS |
| AGTATCGAGGGTTACTTCGA+GGG | 0.620591 | 7_4:-6874119 | Msa1137850:CDS |
| TGCCTGATAATAGTACGATG+TGG | 0.623695 | 7_4:+6876390 | None:intergenic |
| ATAATAGATAGGCAGATGGA+AGG | 0.627317 | 7_4:+6876780 | None:intergenic |
| TTCCGTCCAAGTTTAAACGA+AGG | 0.627501 | 7_4:-6874261 | Msa1137850:CDS |
| AATAGTCATTGCAAATGAGA+CGG | 0.630026 | 7_4:+6874225 | None:intergenic |
| CCTATGGTTTGGCAATCCGT+AGG | 0.635128 | 7_4:+6874477 | None:intergenic |
| TTGAGGCAGAGATAATATCT+GGG | 0.637426 | 7_4:-6874345 | Msa1137850:CDS |
| TACTAATGTGACATCGAATG+TGG | 0.638564 | 7_4:-6874056 | Msa1137850:CDS |
| ATGACTATTAACAAGAGTCA+GGG | 0.638649 | 7_4:-6874211 | Msa1137850:CDS |
| GCCTGATAATAGTACGATGT+GGG | 0.647015 | 7_4:+6876391 | None:intergenic |
| CTTGGAATAAGCAAGTCGCA+CGG | 0.658446 | 7_4:+6874760 | None:intergenic |
| TGTTGAGAAATTCAGGCGTG+TGG | 0.667687 | 7_4:+6874509 | None:intergenic |
| ATTGCAAATGAGACGGACAA+CGG | 0.675963 | 7_4:+6874232 | None:intergenic |
| GTTAGACTTGATTCCTGGTG+AGG | 0.676404 | 7_4:-6874599 | Msa1137850:CDS |
| AAAGATGTTGATCAATGACG+AGG | 0.692006 | 7_4:-6874089 | Msa1137850:CDS |
| GATAATCCAATTCTCAAGGT+CGG | 0.697498 | 7_4:-6877210 | Msa1137850:CDS |
| ATGTTGATCAATGACGAGGA+CGG | 0.706081 | 7_4:-6874085 | Msa1137850:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATTTTTGTTATTTTAAT+TGG | - | chr7_4:6874356-6874375 | Msa1137850:CDS | 10.0% |
| !!! | ATGTTTTTTTAAAAATAGTT+TGG | - | chr7_4:6875023-6875042 | Msa1137850:intron | 10.0% |
| !!! | TTTAAATGAAAAATTTTAAC+GGG | - | chr7_4:6876291-6876310 | Msa1137850:intron | 10.0% |
| !!! | TATGATAAAAATGTATTTTA+GGG | + | chr7_4:6876425-6876444 | None:intergenic | 10.0% |
| !!! | ATATGATAAAAATGTATTTT+AGG | + | chr7_4:6876426-6876445 | None:intergenic | 10.0% |
| !! | AAATCAAACATAGAAATTAA+CGG | + | chr7_4:6874384-6874403 | None:intergenic | 15.0% |
| !!! | TTAATTTCTATGTTTGATTT+AGG | - | chr7_4:6874384-6874403 | Msa1137850:CDS | 15.0% |
| !!! | ACTAATTTTATAGTGTTTTT+TGG | - | chr7_4:6875650-6875669 | Msa1137850:intron | 15.0% |
| !! | GTAACACATATATATATATT+TGG | - | chr7_4:6876038-6876057 | Msa1137850:intron | 15.0% |
| !! | TTTGATAAAAATTTGACATA+AGG | - | chr7_4:6876351-6876370 | Msa1137850:intron | 15.0% |
| !! | TGATAAAAATGTATTAGATT+AGG | + | chr7_4:6876396-6876415 | None:intergenic | 15.0% |
| !! | CTTCAAGAATAATAATAGAT+AGG | + | chr7_4:6874504-6874523 | None:intergenic | 20.0% |
| !! | ATCTATTATTATTCTTGAAG+AGG | - | chr7_4:6874504-6874523 | Msa1137850:CDS | 20.0% |
| !!! | TCTTTTATTTTCTTCACAAA+TGG | + | chr7_4:6874746-6874765 | None:intergenic | 20.0% |
| !!! | TTATTTTGTGAGTAAAAGTT+TGG | - | chr7_4:6875565-6875584 | Msa1137850:intron | 20.0% |
| !!! | ATAAGTGATCAATTAAGTTT+TGG | - | chr7_4:6875612-6875631 | Msa1137850:intron | 20.0% |
| !!! | TAAATTCTAGAATATAACGT+AGG | - | chr7_4:6875818-6875837 | Msa1137850:intron | 20.0% |
| !!! | CTTATTTGACAACTTTTTAT+CGG | + | chr7_4:6876255-6876274 | None:intergenic | 20.0% |
| !! | AAGATTGATTATTACAAAGA+TGG | - | chr7_4:6876890-6876909 | Msa1137850:intron | 20.0% |
| !! | AGATTGATTATTACAAAGAT+GGG | - | chr7_4:6876891-6876910 | Msa1137850:intron | 20.0% |
| ! | TTATGTGTAGTTCATTATAC+TGG | - | chr7_4:6874234-6874253 | Msa1137850:CDS | 25.0% |
| !! | TGTTTGATTTAGGTTATGTT+TGG | - | chr7_4:6874394-6874413 | Msa1137850:CDS | 25.0% |
| ! | AATAATAATAGATAGGCAGA+TGG | + | chr7_4:6874497-6874516 | None:intergenic | 25.0% |
| !!! | GAGGTAAATTTTTAAAAGTC+AGG | - | chr7_4:6874523-6874542 | Msa1137850:CDS | 25.0% |
| ! | TGTCATCAATAACATATTGT+TGG | - | chr7_4:6874557-6874576 | Msa1137850:CDS | 25.0% |
| ! | GATTTCAAACAATAAAAAGC+AGG | - | chr7_4:6874594-6874613 | Msa1137850:CDS | 25.0% |
| !! | CCTTTAATTTCCTCATAATA+GGG | + | chr7_4:6874686-6874705 | None:intergenic | 25.0% |
| !! | ACCTTTAATTTCCTCATAAT+AGG | + | chr7_4:6874687-6874706 | None:intergenic | 25.0% |
| ! | GTCAAATGAAATTAAAAGCA+TGG | - | chr7_4:6874842-6874861 | Msa1137850:intron | 25.0% |
| !!! | CTACATATGGTTGTTTTAAT+TGG | - | chr7_4:6874949-6874968 | Msa1137850:intron | 25.0% |
| ! | AAAAAACACAGTATTTATGC+AGG | + | chr7_4:6875139-6875158 | None:intergenic | 25.0% |
| ! | CATTTACTGATAACTACAAA+AGG | + | chr7_4:6875234-6875253 | None:intergenic | 25.0% |
| ! | TAGTTATCAGTAAATGAGAT+AGG | - | chr7_4:6875238-6875257 | Msa1137850:intron | 25.0% |
| ! | ACACATTATAAAGAGACAAA+AGG | + | chr7_4:6875387-6875406 | None:intergenic | 25.0% |
| !!! | TATAGTGTTTTTTGGTGAAA+TGG | - | chr7_4:6875658-6875677 | Msa1137850:intron | 25.0% |
| ! | AACATAAAAGAACTATCAGA+AGG | + | chr7_4:6876015-6876034 | None:intergenic | 25.0% |
| ! | CAATGTTTCCTAACAAATTT+GGG | + | chr7_4:6876575-6876594 | None:intergenic | 25.0% |
| !! | TTTTCAAAGTAGAGCAATAT+TGG | - | chr7_4:6876608-6876627 | Msa1137850:intron | 25.0% |
| ! | TGATCAACAATTGTATTCTT+TGG | + | chr7_4:6876636-6876655 | None:intergenic | 25.0% |
| ! | AAAGAATACAATTGTTGATC+AGG | - | chr7_4:6876635-6876654 | Msa1137850:intron | 25.0% |
| ! | ATAATATCTGGGTCTAATAT+AGG | - | chr7_4:6876936-6876955 | Msa1137850:intron | 25.0% |
| AATCAACGAAGAAAGAACAT+AGG | + | chr7_4:6874172-6874191 | None:intergenic | 30.0% | |
| ACTACTTTCAATTTCACTCT+TGG | - | chr7_4:6874303-6874322 | Msa1137850:CDS | 30.0% | |
| !! | TGAAAAGTGCTTATCATATC+AGG | - | chr7_4:6874448-6874467 | Msa1137850:CDS | 30.0% |
| ! | CATTTGCTGATAACTACAAA+AGG | + | chr7_4:6874654-6874673 | None:intergenic | 30.0% |
| TAGTTATCAGCAAATGAGAT+AGG | - | chr7_4:6874658-6874677 | Msa1137850:CDS | 30.0% | |
| CCCTATTATGAGGAAATTAA+AGG | - | chr7_4:6874683-6874702 | Msa1137850:CDS | 30.0% | |
| ! | AATGAAATTAAAAGCATGGC+AGG | - | chr7_4:6874846-6874865 | Msa1137850:intron | 30.0% |
| CTTTAACTCGATGTTTGTAT+TGG | - | chr7_4:6874993-6875012 | Msa1137850:intron | 30.0% | |
| !!! | TAGCTTTGGTTTGTTTTCTT+TGG | - | chr7_4:6875060-6875079 | Msa1137850:intron | 30.0% |
| !!! | TTGGTTTGTTTTCTTTGGAA+TGG | - | chr7_4:6875065-6875084 | Msa1137850:intron | 30.0% |
| !!! | TAGCTTTGGTTTGTTTTCTT+TGG | - | chr7_4:6875060-6875079 | Msa1137850:intron | 30.0% |
| !!! | TTGGTTTGTTTTCTTTGGAA+TGG | - | chr7_4:6875065-6875084 | Msa1137850:intron | 30.0% |
| GAAAATCAACGCATAGTAAA+TGG | - | chr7_4:6875504-6875523 | Msa1137850:intron | 30.0% | |
| ! | AAACTAAGCTCATAGCTTTT+TGG | - | chr7_4:6875719-6875738 | Msa1137850:intron | 30.0% |
| ! | AACTAAGCTCATAGCTTTTT+GGG | - | chr7_4:6875720-6875739 | Msa1137850:intron | 30.0% |
| !! | CATCTTTGTTGATTTAAGCA+TGG | - | chr7_4:6875860-6875879 | Msa1137850:intron | 30.0% |
| !!! | GGTTTTGAAGAATTGAAACA+TGG | + | chr7_4:6875986-6876005 | None:intergenic | 30.0% |
| ! | AAGAACTATCAGAAGGTATA+GGG | + | chr7_4:6876008-6876027 | None:intergenic | 30.0% |
| ! | AAAGAACTATCAGAAGGTAT+AGG | + | chr7_4:6876009-6876028 | None:intergenic | 30.0% |
| ! | CGTAACAAATTTTGTAGCAA+TGG | - | chr7_4:6876094-6876113 | Msa1137850:intron | 30.0% |
| !!! | GTTCATGCTTTTTCTTATCA+TGG | - | chr7_4:6876164-6876183 | Msa1137850:intron | 30.0% |
| TAGCAAACAAAACATAAGCA+CGG | + | chr7_4:6876225-6876244 | None:intergenic | 30.0% | |
| !!! | GCTTATGTTTTGTTTGCTAT+TGG | - | chr7_4:6876226-6876245 | Msa1137850:intron | 30.0% |
| !!! | TTATTCGTGCATGTTTTAGT+CGG | - | chr7_4:6876482-6876501 | Msa1137850:intron | 30.0% |
| CTTTCAACAATAGATGCAAT+AGG | + | chr7_4:6876546-6876565 | None:intergenic | 30.0% | |
| CCAATGTTTCCTAACAAATT+TGG | + | chr7_4:6876576-6876595 | None:intergenic | 30.0% | |
| !! | CCAAATTTGTTAGGAAACAT+TGG | - | chr7_4:6876573-6876592 | Msa1137850:intron | 30.0% |
| ! | AAATAAATTTTCTCCTCACC+AGG | + | chr7_4:6876687-6876706 | None:intergenic | 30.0% |
| ACACCTTATCATAAAAACCT+AGG | - | chr7_4:6876717-6876736 | Msa1137850:intron | 30.0% | |
| AGGACCATAGATCAAAATTT+GGG | - | chr7_4:6876852-6876871 | Msa1137850:intron | 30.0% | |
| !! | TAAGCCCAAATTTTGATCTA+TGG | + | chr7_4:6876859-6876878 | None:intergenic | 30.0% |
| CAAAATTTGGGCTTATGTAA+CGG | - | chr7_4:6876864-6876883 | Msa1137850:intron | 30.0% | |
| AATAGTCATTGCAAATGAGA+CGG | + | chr7_4:6877048-6877067 | None:intergenic | 30.0% | |
| AATGACTATTAACAAGAGTC+AGG | - | chr7_4:6877058-6877077 | Msa1137850:intron | 30.0% | |
| ATGACTATTAACAAGAGTCA+GGG | - | chr7_4:6877059-6877078 | Msa1137850:intron | 30.0% | |
| AATTGTCCATGTGAAAAAAC+AGG | + | chr7_4:6877122-6877141 | None:intergenic | 30.0% | |
| GATAATCCAATTCTCAAGGT+CGG | - | chr7_4:6874060-6874079 | Msa1137850:CDS | 35.0% | |
| GTCGGTGAAAAAAAGGAAAT+CGG | - | chr7_4:6874078-6874097 | Msa1137850:CDS | 35.0% | |
| AAAAAGGAAATCGGAAAGCA+AGG | - | chr7_4:6874087-6874106 | Msa1137850:CDS | 35.0% | |
| AAGAAGAAGCTTCTCAAAGA+AGG | - | chr7_4:6874114-6874133 | Msa1137850:CDS | 35.0% | |
| AGTTTGATTCTAGCAGAGAT+AGG | - | chr7_4:6874277-6874296 | Msa1137850:CDS | 35.0% | |
| GTTTGATTCTAGCAGAGATA+GGG | - | chr7_4:6874278-6874297 | Msa1137850:CDS | 35.0% | |
| TTTGATTCTAGCAGAGATAG+GGG | - | chr7_4:6874279-6874298 | Msa1137850:CDS | 35.0% | |
| TTCAATTTCACTCTTGGACA+AGG | - | chr7_4:6874309-6874328 | Msa1137850:CDS | 35.0% | |
| ATAATAGATAGGCAGATGGA+AGG | + | chr7_4:6874493-6874512 | None:intergenic | 35.0% | |
| !! | GCTGCTTACTTTTGATATTG+TGG | - | chr7_4:6874772-6874791 | Msa1137850:CDS | 35.0% |
| CATATGTAGACACTGTCATA+GGG | + | chr7_4:6874938-6874957 | None:intergenic | 35.0% | |
| AATGGTTTCTTATGCTCTCT+TGG | - | chr7_4:6875083-6875102 | Msa1137850:intron | 35.0% | |
| ! | GGAGCACTAAAAGAAACAAA+AGG | + | chr7_4:6875118-6875137 | None:intergenic | 35.0% |
| GATTTCAAACAACAAGAAGC+AGG | - | chr7_4:6875174-6875193 | Msa1137850:intron | 35.0% | |
| ATGAGATAGGATCCCTATTA+TGG | - | chr7_4:6874671-6874690 | Msa1137850:CDS | 35.0% | |
| AATGGTTTCTTATGCTCTCT+TGG | - | chr7_4:6875083-6875102 | Msa1137850:intron | 35.0% | |
| ! | GGAGCACTAAAAGAAACAAA+AGG | + | chr7_4:6875118-6875137 | None:intergenic | 35.0% |
| AGGAAACACAGTAGTTATGT+AGG | + | chr7_4:6875367-6875386 | None:intergenic | 35.0% | |
| ! | GTACAAAACTGACTTTGGTA+AGG | + | chr7_4:6875446-6875465 | None:intergenic | 35.0% |
| ! | CTAAGGTACAAAACTGACTT+TGG | + | chr7_4:6875451-6875470 | None:intergenic | 35.0% |
| !! | AAGTCAGTTTTGTACCTTAG+TGG | - | chr7_4:6875451-6875470 | Msa1137850:intron | 35.0% |
| GCATAGTAAATGGCAATTGA+AGG | - | chr7_4:6875514-6875533 | Msa1137850:intron | 35.0% | |
| !! | AGCTTTTTGGGAAGATATTG+TGG | - | chr7_4:6875732-6875751 | Msa1137850:intron | 35.0% |
| TGGTAGCATATTTCAGTCAT+TGG | - | chr7_4:6875752-6875771 | Msa1137850:intron | 35.0% | |
| TTAAGCATGGTCTGTTTGTA+AGG | - | chr7_4:6875873-6875892 | Msa1137850:intron | 35.0% | |
| !!! | TGGAATTGGTTTTGCTAACA+AGG | - | chr7_4:6875898-6875917 | Msa1137850:intron | 35.0% |
| GAAGAATTGAAACATGGTAG+AGG | + | chr7_4:6875980-6875999 | None:intergenic | 35.0% | |
| ! | AGAACTATCAGAAGGTATAG+GGG | + | chr7_4:6876007-6876026 | None:intergenic | 35.0% |
| TAACTAAGTCATGTCGATGA+AGG | - | chr7_4:6876320-6876339 | Msa1137850:intron | 35.0% | |
| ! | AGCACTTACCCAAATTTGTT+AGG | - | chr7_4:6876564-6876583 | Msa1137850:intron | 35.0% |
| TATGTGTTAGACTTGATTCC+TGG | - | chr7_4:6876666-6876685 | Msa1137850:intron | 35.0% | |
| CCTTATCATAAAAACCTAGG+CGG | - | chr7_4:6876720-6876739 | Msa1137850:intron | 35.0% | |
| ! | ACAATGGTGTTGAGAAATTC+AGG | + | chr7_4:6876771-6876790 | None:intergenic | 35.0% |
| TTCAATCGAATCCTATGGTT+TGG | + | chr7_4:6876807-6876826 | None:intergenic | 35.0% | |
| CTACTTTCAATCGAATCCTA+TGG | + | chr7_4:6876812-6876831 | None:intergenic | 35.0% | |
| CATAGGATTCGATTGAAAGT+AGG | - | chr7_4:6876810-6876829 | Msa1137850:intron | 35.0% | |
| GAGGACCATAGATCAAAATT+TGG | - | chr7_4:6876851-6876870 | Msa1137850:intron | 35.0% | |
| TTGAGGCAGAGATAATATCT+GGG | - | chr7_4:6876925-6876944 | Msa1137850:intron | 35.0% | |
| TGGGTCTAATATAGGTGAAA+AGG | - | chr7_4:6876944-6876963 | Msa1137850:intron | 35.0% | |
| !! | GTGAAAAGGTGTTTATTCCA+AGG | - | chr7_4:6876958-6876977 | Msa1137850:intron | 35.0% |
| AAACTGCCTTCGTTTAAACT+TGG | + | chr7_4:6877018-6877037 | None:intergenic | 35.0% | |
| ! | GGTCAGTCTTTGAAAAATGT+TGG | - | chr7_4:6877080-6877099 | Msa1137850:intron | 35.0% |
| AAAGATGTTGATCAATGACG+AGG | - | chr7_4:6877181-6877200 | Msa1137850:CDS | 35.0% | |
| TACTAATGTGACATCGAATG+TGG | - | chr7_4:6877214-6877233 | Msa1137850:CDS | 35.0% | |
| CTTGAGAATTGGATTATCGC+CGG | + | chr7_4:6874058-6874077 | None:intergenic | 40.0% | |
| ! | TTTTCACCGACCTTGAGAAT+TGG | + | chr7_4:6874069-6874088 | None:intergenic | 40.0% |
| TCTCAAGGTCGGTGAAAAAA+AGG | - | chr7_4:6874071-6874090 | Msa1137850:CDS | 40.0% | |
| AAGCTTCTCAAAGAAGGTGA+AGG | - | chr7_4:6874120-6874139 | Msa1137850:CDS | 40.0% | |
| TTCTCAAAGAAGGTGAAGGT+TGG | - | chr7_4:6874124-6874143 | Msa1137850:CDS | 40.0% | |
| TCTCAAAGAAGGTGAAGGTT+GGG | - | chr7_4:6874125-6874144 | Msa1137850:CDS | 40.0% | |
| TATACTGGAACGTTGCTTGA+TGG | - | chr7_4:6874249-6874268 | Msa1137850:CDS | 40.0% | |
| GAGATAGGATCCCTATTATG+AGG | - | chr7_4:6874673-6874692 | Msa1137850:CDS | 40.0% | |
| TCCCACATCGTACTATTATC+AGG | - | chr7_4:6874878-6874897 | Msa1137850:intron | 40.0% | |
| GCCTGATAATAGTACGATGT+GGG | + | chr7_4:6874882-6874901 | None:intergenic | 40.0% | |
| TGCCTGATAATAGTACGATG+TGG | + | chr7_4:6874883-6874902 | None:intergenic | 40.0% | |
| TCGTACTATTATCAGGCAAG+TGG | - | chr7_4:6874885-6874904 | Msa1137850:intron | 40.0% | |
| CGTACTATTATCAGGCAAGT+GGG | - | chr7_4:6874886-6874905 | Msa1137850:intron | 40.0% | |
| GTGGGTACTAGAGAATTCAT+AGG | - | chr7_4:6874904-6874923 | Msa1137850:intron | 40.0% | |
| CCATATGTAGACACTGTCAT+AGG | + | chr7_4:6874939-6874958 | None:intergenic | 40.0% | |
| CCTATGACAGTGTCTACATA+TGG | - | chr7_4:6874936-6874955 | Msa1137850:intron | 40.0% | |
| AACCAAAGCTAACTACACTG+AGG | + | chr7_4:6875051-6875070 | None:intergenic | 40.0% | |
| TACACTGAGGAGCCATAATA+GGG | + | chr7_4:6875266-6875285 | None:intergenic | 40.0% | |
| AACCAAAGCTAACTACACTG+AGG | + | chr7_4:6875051-6875070 | None:intergenic | 40.0% | |
| TCGCAACAACTAATCCACTA+AGG | + | chr7_4:6875468-6875487 | None:intergenic | 40.0% | |
| CTGTTTGTAAGGCTTGGAAT+TGG | - | chr7_4:6875884-6875903 | Msa1137850:intron | 40.0% | |
| ! | GACTTGCTTATTCCAAGTTC+AGG | - | chr7_4:6876516-6876535 | Msa1137850:intron | 40.0% |
| GCAATAGGATTACCTGAACT+TGG | + | chr7_4:6876531-6876550 | None:intergenic | 40.0% | |
| ! | CCGCCTAGGTTTTTATGATA+AGG | + | chr7_4:6876723-6876742 | None:intergenic | 40.0% |
| GAGTACCTGTGATGTTATTG+AGG | - | chr7_4:6876832-6876851 | Msa1137850:intron | 40.0% | |
| ATGGTCCTCAATAACATCAC+AGG | + | chr7_4:6876840-6876859 | None:intergenic | 40.0% | |
| GATGGGTAAATTTGTGCTTG+AGG | - | chr7_4:6876908-6876927 | Msa1137850:intron | 40.0% | |
| CTTGAGGCAGAGATAATATC+TGG | - | chr7_4:6876924-6876943 | Msa1137850:intron | 40.0% | |
| GACGGAATTCTAGTATCAGA+CGG | + | chr7_4:6876996-6877015 | None:intergenic | 40.0% | |
| TTCCGTCCAAGTTTAAACGA+AGG | - | chr7_4:6877009-6877028 | Msa1137850:CDS | 40.0% | |
| TGCCTTCGTTTAAACTTGGA+CGG | + | chr7_4:6877014-6877033 | None:intergenic | 40.0% | |
| ATTGCAAATGAGACGGACAA+CGG | + | chr7_4:6877041-6877060 | None:intergenic | 40.0% | |
| CCATGTGAAAAAACAGGAGA+CGG | + | chr7_4:6877116-6877135 | None:intergenic | 40.0% | |
| ATGTTGATCAATGACGAGGA+CGG | - | chr7_4:6877185-6877204 | Msa1137850:CDS | 40.0% | |
| CGGCGATAATCCAATTCTCA+AGG | - | chr7_4:6874056-6874075 | Msa1137850:CDS | 45.0% | |
| CTTGGACAAGGTTAGTGCAT+TGG | - | chr7_4:6874321-6874340 | Msa1137850:CDS | 45.0% | |
| AGGTTAGTGCATTGGAACGA+CGG | - | chr7_4:6874329-6874348 | Msa1137850:CDS | 45.0% | |
| TAGGCAGATGGAAGGTGATA+AGG | + | chr7_4:6874485-6874504 | None:intergenic | 45.0% | |
| ! | CTCCTCAGTGTAGTTAGCTT+TGG | - | chr7_4:6875046-6875065 | Msa1137850:intron | 45.0% |
| CTACACTGAGGAGCCATAAT+AGG | + | chr7_4:6875267-6875286 | None:intergenic | 45.0% | |
| ! | CTCCTCAGTGTAGTTAGCTT+TGG | - | chr7_4:6875046-6875065 | Msa1137850:intron | 45.0% |
| TTGTTGCGAGTAGCATGTCA+TGG | - | chr7_4:6875479-6875498 | Msa1137850:intron | 45.0% | |
| TTTCAGTCATTGGCCATAGC+AGG | - | chr7_4:6875762-6875781 | Msa1137850:intron | 45.0% | |
| AAAACCAGCTGAACCTGCTA+TGG | + | chr7_4:6875778-6875797 | None:intergenic | 45.0% | |
| CATGGTCTGTTTGTAAGGCT+TGG | - | chr7_4:6875878-6875897 | Msa1137850:intron | 45.0% | |
| CGATAGAAGCTGACATAGTG+AGG | + | chr7_4:6876076-6876095 | None:intergenic | 45.0% | |
| TTGGAATAAGCAAGTCGCAC+GGG | + | chr7_4:6876512-6876531 | None:intergenic | 45.0% | |
| CTTGGAATAAGCAAGTCGCA+CGG | + | chr7_4:6876513-6876532 | None:intergenic | 45.0% | |
| GTTAGACTTGATTCCTGGTG+AGG | - | chr7_4:6876671-6876690 | Msa1137850:intron | 45.0% | |
| TGTTGAGAAATTCAGGCGTG+TGG | + | chr7_4:6876764-6876783 | None:intergenic | 45.0% | |
| CTCAACACCATTGTTGCCTA+CGG | - | chr7_4:6876777-6876796 | Msa1137850:CDS | 45.0% | |
| !!! | CCGTCTCCTGTTTTTTCACA+TGG | - | chr7_4:6877113-6877132 | Msa1137850:intron | 45.0% |
| AATTGTACGTCGCAGTATCG+AGG | - | chr7_4:6877138-6877157 | Msa1137850:intron | 45.0% | |
| ! | ATTGTACGTCGCAGTATCGA+GGG | - | chr7_4:6877139-6877158 | Msa1137850:intron | 45.0% |
| ! | AGTATCGAGGGTTACTTCGA+GGG | - | chr7_4:6877151-6877170 | Msa1137850:CDS | 45.0% |
| !!! | ATTTAAATGAAAAATTTTAA+CGG | - | chr7_4:6876290-6876309 | Msa1137850:intron | 5.0% |
| AAAGACGACTTCGACTTCGC+CGG | - | chr7_4:6874030-6874049 | Msa1137850:CDS | 50.0% | |
| AATTGGATTATCGCCGGCAC+CGG | + | chr7_4:6874052-6874071 | None:intergenic | 50.0% | |
| GGTTGGGATGCTCATGATGT+TGG | - | chr7_4:6874141-6874160 | Msa1137850:CDS | 50.0% | |
| TGGCAATCCGTAGGCAACAA+TGG | + | chr7_4:6876787-6876806 | None:intergenic | 50.0% | |
| ! | CCTATGGTTTGGCAATCCGT+AGG | + | chr7_4:6876796-6876815 | None:intergenic | 50.0% |
| ! | CCTACGGATTGCCAAACCAT+AGG | - | chr7_4:6876793-6876812 | Msa1137850:CDS | 50.0% |
| ! | GACGGTTCTAGCGATAACCT+TGG | + | chr7_4:6876978-6876997 | None:intergenic | 50.0% |
| ! | CAGTATCGAGGGTTACTTCG+AGG | - | chr7_4:6877150-6877169 | Msa1137850:intron | 50.0% |
| TTGGCCATAGCAGGTTCAGC+TGG | - | chr7_4:6875771-6875790 | Msa1137850:intron | 55.0% | |
| TCGAGGGTTACTTCGAGGGA+TGG | - | chr7_4:6877155-6877174 | Msa1137850:CDS | 55.0% | |
| AGTCTAGTGCGTCACCGCCT+AGG | + | chr7_4:6876737-6876756 | None:intergenic | 60.0% | |
| GACTTCGACTTCGCCGGTGC+CGG | - | chr7_4:6874036-6874055 | Msa1137850:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 6874027 | 6877265 | 6874027 | ID=Msa1137850;Name=Msa1137850 |
| chr7_4 | mRNA | 6874027 | 6877265 | 6874027 | ID=Msa1137850-mRNA-1;Parent=Msa1137850;Name=Msa1137850-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0|0.2|1|1|5|0|365 |
| chr7_4 | exon | 6877151 | 6877265 | 6877151 | ID=Msa1137850-mRNA-1:exon:1919;Parent=Msa1137850-mRNA-1 |
| chr7_4 | exon | 6876962 | 6877048 | 6876962 | ID=Msa1137850-mRNA-1:exon:1918;Parent=Msa1137850-mRNA-1 |
| chr7_4 | exon | 6876767 | 6876822 | 6876767 | ID=Msa1137850-mRNA-1:exon:1917;Parent=Msa1137850-mRNA-1 |
| chr7_4 | exon | 6876389 | 6876463 | 6876389 | ID=Msa1137850-mRNA-1:exon:1916;Parent=Msa1137850-mRNA-1 |
| chr7_4 | exon | 6874027 | 6874791 | 6874027 | ID=Msa1137850-mRNA-1:exon:1915;Parent=Msa1137850-mRNA-1 |
| chr7_4 | CDS | 6877151 | 6877265 | 6877151 | ID=Msa1137850-mRNA-1:cds;Parent=Msa1137850-mRNA-1 |
| chr7_4 | CDS | 6876962 | 6877048 | 6876962 | ID=Msa1137850-mRNA-1:cds;Parent=Msa1137850-mRNA-1 |
| chr7_4 | CDS | 6876767 | 6876822 | 6876767 | ID=Msa1137850-mRNA-1:cds;Parent=Msa1137850-mRNA-1 |
| chr7_4 | CDS | 6876389 | 6876463 | 6876389 | ID=Msa1137850-mRNA-1:cds;Parent=Msa1137850-mRNA-1 |
| chr7_4 | CDS | 6874027 | 6874791 | 6874027 | ID=Msa1137850-mRNA-1:cds;Parent=Msa1137850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
