Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440890 | sp|Q8VZB9|R10A1_ARATH | 88.073 | 218 | 24 | 1 | 21 | 238 | 1 | 216 | 9.65e-125 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440890 | B7FGL9 | 99.083 | 218 | 0 | 1 | 21 | 238 | 1 | 216 | 1.41e-152 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140890 | Msa1440890 | 0.887790 | 1.046952e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440890 | MtrunA17_Chr3g0113691 | 99.083 | 218 | 0 | 1 | 21 | 238 | 1 | 216 | 2.71e-156 | 432 |
| Msa1440890 | MtrunA17_Chr2g0321491 | 97.706 | 218 | 3 | 1 | 21 | 238 | 1 | 216 | 5.24e-155 | 429 |
| Msa1440890 | MtrunA17_Chr5g0399471 | 96.789 | 218 | 5 | 1 | 21 | 238 | 1 | 216 | 1.05e-153 | 426 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1440890 | AT1G08360.1 | 88.073 | 218 | 24 | 1 | 21 | 238 | 1 | 216 | 9.81e-126 | 355 |
| Msa1440890 | AT5G22440.1 | 89.041 | 219 | 21 | 2 | 21 | 238 | 1 | 217 | 1.10e-124 | 352 |
| Msa1440890 | AT5G22440.2 | 89.041 | 219 | 21 | 2 | 21 | 238 | 1 | 217 | 1.10e-124 | 352 |
| Msa1440890 | AT2G27530.2 | 87.156 | 218 | 26 | 1 | 21 | 238 | 1 | 216 | 1.32e-124 | 352 |
| Msa1440890 | AT2G27530.1 | 87.156 | 218 | 26 | 1 | 21 | 238 | 1 | 216 | 1.32e-124 | 352 |
Find 49 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCCCTCAAGAGATTCT+TGG | 0.221837 | tig0029131:-9785 | None:intergenic |
| TAAACAAATTCCCCGTCTTT+TGG | 0.235742 | tig0029131:+9382 | Msa1440890:CDS |
| GAGACCATTGAACTTCAAAT+TGG | 0.290529 | tig0029131:+7245 | Msa1440890:CDS |
| TAAGAAAGCATGGTACTTCT+TGG | 0.344589 | tig0029131:-9342 | None:intergenic |
| GCTACTCATCTCTTTATGAT+TGG | 0.377046 | tig0029131:+10671 | Msa1440890:three_prime_UTR |
| TTGGTTTACGAACCTCATTT+TGG | 0.377155 | tig0029131:-7014 | None:intergenic |
| GAGACCAATTTGAAGTTCAA+TGG | 0.404007 | tig0029131:-7249 | None:intergenic |
| AGCATACAAAGCTTCATCTT+AGG | 0.414122 | tig0029131:-7338 | None:intergenic |
| AAGATGAAGCTTTGTATGCT+TGG | 0.426202 | tig0029131:+7341 | Msa1440890:CDS |
| GAAGATAGGTTTGGAATCAA+TGG | 0.426241 | tig0029131:+9265 | Msa1440890:CDS |
| GTATACCTCTTCGACGTGTT+GGG | 0.429152 | tig0029131:-7369 | None:intergenic |
| CTTGTATCTGAAAAGTTCAA+TGG | 0.435518 | tig0029131:+10451 | Msa1440890:CDS |
| GCAGGCAGAGAAGATAGGTT+TGG | 0.444089 | tig0029131:+9256 | Msa1440890:intron |
| GCTTCTGCTACAGAGCAAAA+TGG | 0.454827 | tig0029131:-6980 | None:intergenic |
| CTCTGCATGGGAGTAGCTGT+GGG | 0.459921 | tig0029131:+9852 | Msa1440890:CDS |
| AATTTGCAGGCAGAGAAGAT+AGG | 0.475004 | tig0029131:+9251 | Msa1440890:intron |
| ATCTTAGGACGAGGGATATG+AGG | 0.482343 | tig0029131:-7323 | None:intergenic |
| TGTATACCTCTTCGACGTGT+TGG | 0.483872 | tig0029131:-7370 | None:intergenic |
| TTGTATCTGAAAAGTTCAAT+GGG | 0.491020 | tig0029131:+10452 | Msa1440890:CDS |
| GCTCTGCATGGGAGTAGCTG+TGG | 0.501869 | tig0029131:+9851 | Msa1440890:CDS |
| CCAAGAATCTCTTGAGGGAA+AGG | 0.504153 | tig0029131:+9785 | Msa1440890:CDS |
| AGAAGCAATCTCAGGAATCA+TGG | 0.510750 | tig0029131:+7190 | Msa1440890:CDS |
| TATTCGGACAAATGTATTGA+AGG | 0.516581 | tig0029131:-10546 | None:intergenic |
| GAGACCAGGACCCAAAAGAC+GGG | 0.519890 | tig0029131:-9393 | None:intergenic |
| GCAGTGAGAGAAGCAATCTC+AGG | 0.522147 | tig0029131:+7182 | Msa1440890:CDS |
| CAAAGCTTCATCTTAGGACG+AGG | 0.528067 | tig0029131:-7332 | None:intergenic |
| TCTTGGTGAGAGACAAGTGT+TGG | 0.535756 | tig0029131:-9768 | None:intergenic |
| GGTGAAATTTCAGCTAAAGA+AGG | 0.544360 | tig0029131:+9827 | Msa1440890:CDS |
| GCTAAAGAAGGTGCTCTGCA+TGG | 0.545816 | tig0029131:+9839 | Msa1440890:CDS |
| CTAAAGAAGGTGCTCTGCAT+GGG | 0.546643 | tig0029131:+9840 | Msa1440890:CDS |
| CTTGGTGAGAGACAAGTGTT+GGG | 0.551609 | tig0029131:-9767 | None:intergenic |
| TCTCACCAAGAATCTCTTGA+GGG | 0.555778 | tig0029131:+9780 | Msa1440890:CDS |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | tig0029131:+9404 | Msa1440890:CDS |
| CCATGCTTTCTTAGCTTCTG+AGG | 0.565937 | tig0029131:+9352 | Msa1440890:CDS |
| AGGGATATGAGGCAACTTGA+CGG | 0.568095 | tig0029131:-7312 | None:intergenic |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | tig0029131:+9400 | Msa1440890:CDS |
| GGTCAATGAGACAAAGGCTA+TGG | 0.576127 | tig0029131:+9806 | Msa1440890:CDS |
| TTGTAGTAAGCTTCAAAGTG+AGG | 0.594735 | tig0029131:+7160 | Msa1440890:intron |
| CCACAGATTCAACCAAAATG+AGG | 0.601275 | tig0029131:+7002 | Msa1440890:CDS |
| CCTCAGAAGCTAAGAAAGCA+TGG | 0.604392 | tig0029131:-9352 | None:intergenic |
| AGCTGTGGGCAATGTTAGCA+TGG | 0.607215 | tig0029131:+9866 | Msa1440890:CDS |
| TGAGACCAGGACCCAAAAGA+CGG | 0.616750 | tig0029131:-9394 | None:intergenic |
| CTCTCACCAAGAATCTCTTG+AGG | 0.617687 | tig0029131:+9779 | Msa1440890:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | tig0029131:-9407 | None:intergenic |
| GGGAAAGGTCAATGAGACAA+AGG | 0.641581 | tig0029131:+9800 | Msa1440890:CDS |
| AGACGCCCAACACGTCGAAG+AGG | 0.667465 | tig0029131:+7364 | Msa1440890:CDS |
| AAAGCTTCATCTTAGGACGA+GGG | 0.681120 | tig0029131:-7331 | None:intergenic |
| ATAAGTTCCCTTAAAAGACA+CGG | 0.683519 | tig0029131:-10484 | None:intergenic |
| AGACCAGGACCCAAAAGACG+GGG | 0.716978 | tig0029131:-9392 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTGTATATTATTAAA+TGG | + | tig0029131:9075-9094 | Msa1440890:intron | 10.0% |
| !! | CAATAAACAAAACATTAAAT+TGG | - | tig0029131:7429-7448 | None:intergenic | 15.0% |
| !!! | TATAAGTTTTTACTGTTTTA+AGG | + | tig0029131:7646-7665 | Msa1440890:intron | 15.0% |
| !!! | ATAAGTTTTTACTGTTTTAA+GGG | + | tig0029131:7647-7666 | Msa1440890:intron | 15.0% |
| !! | AGATAGAATTTATCTTATAT+AGG | - | tig0029131:7817-7836 | None:intergenic | 15.0% |
| !! | TGTAAAATCCTAATATAAAT+CGG | + | tig0029131:7836-7855 | Msa1440890:intron | 15.0% |
| !! | AGAATAAAAAAAATATGAGA+TGG | - | tig0029131:8583-8602 | None:intergenic | 15.0% |
| !! | GTATATTATTAAATGGATAA+TGG | + | tig0029131:9082-9101 | Msa1440890:intron | 15.0% |
| !!! | GAATTCATTTATAGATTTTT+AGG | - | tig0029131:9584-9603 | None:intergenic | 15.0% |
| !!! | AATTTTTAAACACTGATTTA+CGG | + | tig0029131:10308-10327 | Msa1440890:intron | 15.0% |
| !! | CTTAAATATTGAAAAATGAA+AGG | - | tig0029131:10512-10531 | None:intergenic | 15.0% |
| !! | AAAGAAATGAGATATCAAAT+TGG | - | tig0029131:7758-7777 | None:intergenic | 20.0% |
| !! | ATGTAATATTCTAATCTCAT+TGG | - | tig0029131:7785-7804 | None:intergenic | 20.0% |
| !! | GTACAATATATATCAATCAA+TGG | - | tig0029131:7996-8015 | None:intergenic | 20.0% |
| !!! | TGTTTTATGAATATTCGATT+AGG | + | tig0029131:8810-8829 | Msa1440890:intron | 20.0% |
| !!! | TTTAGTTTTGCAAATTTTGT+TGG | + | tig0029131:8914-8933 | Msa1440890:intron | 20.0% |
| !! | AATTCATTGAATGAAATACT+TGG | - | tig0029131:9637-9656 | None:intergenic | 20.0% |
| !! | TAAAATATACCTTTCAAACA+AGG | - | tig0029131:9661-9680 | None:intergenic | 20.0% |
| !! | ATTTCAGAATTCAACAATTA+TGG | + | tig0029131:9698-9717 | Msa1440890:intron | 20.0% |
| !! | GTGTTTAAAAATTTCAACTA+GGG | - | tig0029131:10301-10320 | None:intergenic | 20.0% |
| !! | AGTGTTTAAAAATTTCAACT+AGG | - | tig0029131:10302-10321 | None:intergenic | 20.0% |
| !!! | ATTTTTAAACACTGATTTAC+GGG | + | tig0029131:10309-10328 | Msa1440890:intron | 20.0% |
| !! | ATCAGAAAGCATAAATTAGA+TGG | - | tig0029131:7057-7076 | None:intergenic | 25.0% |
| ! | AAGAACAATGATAAGATCTA+CGG | - | tig0029131:7401-7420 | None:intergenic | 25.0% |
| ! | AAAATCCTAATATAAATCGG+TGG | + | tig0029131:7839-7858 | Msa1440890:intron | 25.0% |
| ! | ACTACATTGTCATCATAAAA+AGG | + | tig0029131:7894-7913 | Msa1440890:intron | 25.0% |
| ! | ATATATCAATCAATGGCATT+GGG | - | tig0029131:7989-8008 | None:intergenic | 25.0% |
| ! | TATATATCAATCAATGGCAT+TGG | - | tig0029131:7990-8009 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTTTTTGTTGGTT+TGG | - | tig0029131:8040-8059 | None:intergenic | 25.0% |
| ! | ATAACAAAGGAAAATCAGAT+GGG | - | tig0029131:8249-8268 | None:intergenic | 25.0% |
| ! | ATCACTCATAAACATAACAA+AGG | - | tig0029131:8262-8281 | None:intergenic | 25.0% |
| ! | AAACAAACACTCTTTAAGTA+CGG | - | tig0029131:8320-8339 | None:intergenic | 25.0% |
| !!! | ACTTAAAGAGTGTTTGTTTT+TGG | + | tig0029131:8321-8340 | Msa1440890:intron | 25.0% |
| ! | AACATGATTTCCTTTACAAA+AGG | + | tig0029131:8442-8461 | Msa1440890:intron | 25.0% |
| !! | TCTGAATGTTTTCAGAAAAA+CGG | + | tig0029131:8466-8485 | Msa1440890:intron | 25.0% |
| ! | ATCACATATTGTACAAATTC+AGG | - | tig0029131:8694-8713 | None:intergenic | 25.0% |
| ! | CGAATATTCATAAAACAGTT+TGG | - | tig0029131:8807-8826 | None:intergenic | 25.0% |
| ! | GGAAGTTAAAAACAAAGATA+AGG | - | tig0029131:8892-8911 | None:intergenic | 25.0% |
| ! | CAAAATTTGCAAAACTAAAC+TGG | - | tig0029131:8913-8932 | None:intergenic | 25.0% |
| ! | AAGATTAAACACAAATGACT+AGG | - | tig0029131:9224-9243 | None:intergenic | 25.0% |
| !! | ATTTTTGTTAAGCTTCTTCA+AGG | - | tig0029131:9300-9319 | None:intergenic | 25.0% |
| ! | GCTTAACAAAAATAAGAAGT+TGG | + | tig0029131:9307-9326 | Msa1440890:CDS | 25.0% |
| !! | TAGGTTTTACGTTTATTTAC+CGG | + | tig0029131:9445-9464 | Msa1440890:intron | 25.0% |
| !!! | GAATTCTGAAATCTTAAGTA+CGG | - | tig0029131:9690-9709 | None:intergenic | 25.0% |
| !! | TATGTTTTGCATTACTTTAC+AGG | + | tig0029131:9738-9757 | Msa1440890:intron | 25.0% |
| !! | ATGTTTTGCATTACTTTACA+GGG | + | tig0029131:9739-9758 | Msa1440890:intron | 25.0% |
| !! | ATAACTTGCACAAAAAAGAA+AGG | - | tig0029131:10029-10048 | None:intergenic | 25.0% |
| ! | AATTCAAGGAAAGGAAATAA+AGG | - | tig0029131:10158-10177 | None:intergenic | 25.0% |
| ! | AAAAAATGTGACCTCAAATT+AGG | + | tig0029131:10192-10211 | Msa1440890:intron | 25.0% |
| ! | AAAAATGTGACCTCAAATTA+GGG | + | tig0029131:10193-10212 | Msa1440890:intron | 25.0% |
| ! | GAAGAAACAACAAAAAAATG+TGG | - | tig0029131:10353-10372 | None:intergenic | 25.0% |
| ! | TTGTATCTGAAAAGTTCAAT+GGG | + | tig0029131:10452-10471 | Msa1440890:CDS | 25.0% |
| !! | GAAGTTTTTATCAAGCTATT+CGG | - | tig0029131:10565-10584 | None:intergenic | 25.0% |
| ! | GGAAAGATGAATCGATTTAT+TGG | - | tig0029131:7036-7055 | None:intergenic | 30.0% |
| !! | TCTGATTGATTTGTGTTTGA+TGG | + | tig0029131:7135-7154 | Msa1440890:intron | 30.0% |
| ! | AAACTTGCGATTTTTCTCTT+TGG | - | tig0029131:7222-7241 | None:intergenic | 30.0% |
| ! | TGAAACGCTTATCTTTTTGT+GGG | - | tig0029131:7286-7305 | None:intergenic | 30.0% |
| TTACGCTACATAGATATATC+TGG | + | tig0029131:7559-7578 | Msa1440890:intron | 30.0% | |
| ! | TTCCACTATCCTTTTGTTAA+GGG | + | tig0029131:7596-7615 | Msa1440890:intron | 30.0% |
| AAATTGCATCCCTTAACAAA+AGG | - | tig0029131:7608-7627 | None:intergenic | 30.0% | |
| TTGCAACATTCAATAAAGAC+GGG | - | tig0029131:7721-7740 | None:intergenic | 30.0% | |
| CTTGCAACATTCAATAAAGA+CGG | - | tig0029131:7722-7741 | None:intergenic | 30.0% | |
| TCTTTATTGAATGTTGCAAG+AGG | + | tig0029131:7722-7741 | Msa1440890:intron | 30.0% | |
| !!! | GTTGGTGTTTTTGTTTTTGT+TGG | - | tig0029131:8045-8064 | None:intergenic | 30.0% |
| AAAAACCCAATTCAACAGAA+GGG | - | tig0029131:8179-8198 | None:intergenic | 30.0% | |
| CATAACAAAGGAAAATCAGA+TGG | - | tig0029131:8250-8269 | None:intergenic | 30.0% | |
| TTGTTCTCTTCTTGAAGATT+CGG | + | tig0029131:8374-8393 | Msa1440890:intron | 30.0% | |
| ! | ACATTCAGATCCTTTTGTAA+AGG | - | tig0029131:8455-8474 | None:intergenic | 30.0% |
| ! | AATGTTTTCAGAAAAACGGT+GGG | + | tig0029131:8470-8489 | Msa1440890:intron | 30.0% |
| AAAAAAAAACTCAGCATCTG+TGG | - | tig0029131:8540-8559 | None:intergenic | 30.0% | |
| ATGAGATGGAATTAGTAGTA+TGG | - | tig0029131:8569-8588 | None:intergenic | 30.0% | |
| TAATTGCTTGTCTAGGAATT+TGG | - | tig0029131:8615-8634 | None:intergenic | 30.0% | |
| TAGTCATTAATTGCTTGTCT+AGG | - | tig0029131:8622-8641 | None:intergenic | 30.0% | |
| ATATTGTACAAATTCAGGAG+TGG | - | tig0029131:8689-8708 | None:intergenic | 30.0% | |
| ATCACAAGTTCAAATACTCA+TGG | + | tig0029131:8844-8863 | Msa1440890:intron | 30.0% | |
| TGAACAGTGATTACACAATT+AGG | - | tig0029131:9008-9027 | None:intergenic | 30.0% | |
| TAATTGTGTAATCACTGTTC+AGG | + | tig0029131:9007-9026 | Msa1440890:intron | 30.0% | |
| AAAAGCTAAACACTCATTTC+CGG | - | tig0029131:9467-9486 | None:intergenic | 30.0% | |
| !! | AATGAATTGCCTTGTTTGAA+AGG | + | tig0029131:9649-9668 | Msa1440890:intron | 30.0% |
| TTGTGCAACGATGAAATAAA+AGG | - | tig0029131:9978-9997 | None:intergenic | 30.0% | |
| AAATAAAGGAAACATGTGTG+CGG | - | tig0029131:10144-10163 | None:intergenic | 30.0% | |
| TATTACAGCAATTCAAGGAA+AGG | - | tig0029131:10167-10186 | None:intergenic | 30.0% | |
| ACAGATATTACAGCAATTCA+AGG | - | tig0029131:10172-10191 | None:intergenic | 30.0% | |
| !! | TGTTGTTTCTTCAATATCCT+AGG | + | tig0029131:10361-10380 | Msa1440890:intron | 30.0% |
| !! | TATAACCTACTGTTGATTTC+AGG | + | tig0029131:10421-10440 | Msa1440890:intron | 30.0% |
| CTTGTATCTGAAAAGTTCAA+TGG | + | tig0029131:10451-10470 | Msa1440890:CDS | 30.0% | |
| ! | AAATCTTACCGTGTCTTTTA+AGG | + | tig0029131:10476-10495 | Msa1440890:CDS | 30.0% |
| ! | AATCTTACCGTGTCTTTTAA+GGG | + | tig0029131:10477-10496 | Msa1440890:CDS | 30.0% |
| ATAAGTTCCCTTAAAAGACA+CGG | - | tig0029131:10487-10506 | None:intergenic | 30.0% | |
| TATTCGGACAAATGTATTGA+AGG | - | tig0029131:10549-10568 | None:intergenic | 30.0% | |
| ! | TCATCTGTTTACAATTTTGC+TGG | + | tig0029131:10583-10602 | Msa1440890:three_prime_UTR | 30.0% |
| ! | TTGGTTTACGAACCTCATTT+TGG | - | tig0029131:7017-7036 | None:intergenic | 35.0% |
| TTGTAGTAAGCTTCAAAGTG+AGG | + | tig0029131:7160-7179 | Msa1440890:intron | 35.0% | |
| GAGACCATTGAACTTCAAAT+TGG | + | tig0029131:7245-7264 | Msa1440890:CDS | 35.0% | |
| ! | GAGACCAATTTGAAGTTCAA+TGG | - | tig0029131:7252-7271 | None:intergenic | 35.0% |
| ! | CTGAAACGCTTATCTTTTTG+TGG | - | tig0029131:7287-7306 | None:intergenic | 35.0% |
| CAAAAAGATAAGCGTTTCAG+TGG | + | tig0029131:7287-7306 | Msa1440890:CDS | 35.0% | |
| AGCATACAAAGCTTCATCTT+AGG | - | tig0029131:7341-7360 | None:intergenic | 35.0% | |
| ! | AAGATGAAGCTTTGTATGCT+TGG | + | tig0029131:7341-7360 | Msa1440890:CDS | 35.0% |
| ! | CTTCCACTATCCTTTTGTTA+AGG | + | tig0029131:7595-7614 | Msa1440890:intron | 35.0% |
| ATCCCTTAACAAAAGGATAG+TGG | - | tig0029131:7601-7620 | None:intergenic | 35.0% | |
| !! | TAGCACCACCGATTTATATT+AGG | - | tig0029131:7847-7866 | None:intergenic | 35.0% |
| GTTTGTGATTTAGAGGAAAG+TGG | - | tig0029131:8018-8037 | None:intergenic | 35.0% | |
| !! | TGGTTTGGTTTGTGATTTAG+AGG | - | tig0029131:8025-8044 | None:intergenic | 35.0% |
| ACCAAACCCTTAGATGAAAA+GGG | - | tig0029131:8099-8118 | None:intergenic | 35.0% | |
| AACCAAACCCTTAGATGAAA+AGG | - | tig0029131:8100-8119 | None:intergenic | 35.0% | |
| !! | TTCATCTAAGGGTTTGGTTT+TGG | + | tig0029131:8101-8120 | Msa1440890:intron | 35.0% |
| GAAAAACCCAATTCAACAGA+AGG | - | tig0029131:8180-8199 | None:intergenic | 35.0% | |
| ! | GAATGTTTTCAGAAAAACGG+TGG | + | tig0029131:8469-8488 | Msa1440890:intron | 35.0% |
| !! | ACGGTGGGTTTGTTATAATT+AGG | + | tig0029131:8485-8504 | Msa1440890:intron | 35.0% |
| !! | GGTTTGTTATAATTAGGCAG+CGG | + | tig0029131:8491-8510 | Msa1440890:intron | 35.0% |
| ! | GAATATTCGATTAGGTGTTG+TGG | + | tig0029131:8818-8837 | Msa1440890:intron | 35.0% |
| !! | GGAAAGTGTTGTCATTATGT+AGG | + | tig0029131:9028-9047 | Msa1440890:intron | 35.0% |
| GACAAATAAGTTACGACAGT+AGG | + | tig0029131:9137-9156 | Msa1440890:intron | 35.0% | |
| ACAAATGACTAGGCAAAAAC+TGG | - | tig0029131:9214-9233 | None:intergenic | 35.0% | |
| AATCTTTCACTCCAATTTGC+AGG | + | tig0029131:9238-9257 | Msa1440890:intron | 35.0% | |
| ! | GAAGATAGGTTTGGAATCAA+TGG | + | tig0029131:9265-9284 | Msa1440890:CDS | 35.0% |
| ! | TAAGAAAGCATGGTACTTCT+TGG | - | tig0029131:9345-9364 | None:intergenic | 35.0% |
| ! | TAAACAAATTCCCCGTCTTT+TGG | + | tig0029131:9382-9401 | Msa1440890:CDS | 35.0% |
| ! | AAACAAATTCCCCGTCTTTT+GGG | + | tig0029131:9383-9402 | Msa1440890:CDS | 35.0% |
| GGTGAAATTTCAGCTAAAGA+AGG | + | tig0029131:9827-9846 | Msa1440890:CDS | 35.0% | |
| !!! | TCTTTTTCAACAAGGAGACA+AGG | - | tig0029131:9935-9954 | None:intergenic | 35.0% |
| TCTCCTTGTTGAAAAAGAAC+TGG | + | tig0029131:9937-9956 | Msa1440890:CDS | 35.0% | |
| ATGATTTCTTTGATGCCCTT+CGG | + | tig0029131:10057-10076 | Msa1440890:intron | 35.0% | |
| AACCACTTATCCCTAATTTG+AGG | - | tig0029131:10206-10225 | None:intergenic | 35.0% | |
| CAATCAGACTGAATATTCCT+AGG | - | tig0029131:10381-10400 | None:intergenic | 35.0% | |
| GCTACTCATCTCTTTATGAT+TGG | + | tig0029131:10671-10690 | Msa1440890:three_prime_UTR | 35.0% | |
| !!! | CCTCATTTTGGTTGAATCTG+TGG | - | tig0029131:7005-7024 | None:intergenic | 40.0% |
| CCACAGATTCAACCAAAATG+AGG | + | tig0029131:7002-7021 | Msa1440890:CDS | 40.0% | |
| AGAAGCAATCTCAGGAATCA+TGG | + | tig0029131:7190-7209 | Msa1440890:CDS | 40.0% | |
| AAAGCTTCATCTTAGGACGA+GGG | - | tig0029131:7334-7353 | None:intergenic | 40.0% | |
| !! | ACAAAAGGATAGTGGAAGCA+TGG | - | tig0029131:7593-7612 | None:intergenic | 40.0% |
| TCAAGATCTGAGCTTCTTGT+TGG | - | tig0029131:8063-8082 | None:intergenic | 40.0% | |
| ACAAGAAGCTCAGATCTTGA+AGG | + | tig0029131:8063-8082 | Msa1440890:intron | 40.0% | |
| TAACGTCCCTTCTGTTGAAT+TGG | + | tig0029131:8170-8189 | Msa1440890:intron | 40.0% | |
| AACGTCCCTTCTGTTGAATT+GGG | + | tig0029131:8171-8190 | Msa1440890:intron | 40.0% | |
| ! | GCACTGATCCAATTTCTGAT+GGG | + | tig0029131:8343-8362 | Msa1440890:intron | 40.0% |
| CACTGATCCAATTTCTGATG+GGG | + | tig0029131:8344-8363 | Msa1440890:intron | 40.0% | |
| TGTGTTTCCCCATCAGAAAT+TGG | - | tig0029131:8354-8373 | None:intergenic | 40.0% | |
| ATCTGTGGATTCCATCTCTA+CGG | - | tig0029131:8525-8544 | None:intergenic | 40.0% | |
| TTATGTAGGTTCAACAACGC+TGG | + | tig0029131:9042-9061 | Msa1440890:intron | 40.0% | |
| ATGACTAGGCAAAAACTGGA+AGG | - | tig0029131:9210-9229 | None:intergenic | 40.0% | |
| TATCTTCTCTGCCTGCAAAT+TGG | - | tig0029131:9252-9271 | None:intergenic | 40.0% | |
| AATTTGCAGGCAGAGAAGAT+AGG | + | tig0029131:9251-9270 | Msa1440890:intron | 40.0% | |
| GCATGTGTTTCTCTTGGTTT+AGG | + | tig0029131:9426-9445 | Msa1440890:intron | 40.0% | |
| TCTCACCAAGAATCTCTTGA+GGG | + | tig0029131:9780-9799 | Msa1440890:CDS | 40.0% | |
| !!! | CTGCCAGTTCTTTTTCAACA+AGG | - | tig0029131:9943-9962 | None:intergenic | 40.0% |
| GACCTCAAATTAGGGATAAG+TGG | + | tig0029131:10201-10220 | Msa1440890:intron | 40.0% | |
| !! | CCTACTGTTGATTTCAGGTT+CGG | + | tig0029131:10426-10445 | Msa1440890:intron | 40.0% |
| GCTTCTGCTACAGAGCAAAA+TGG | - | tig0029131:6983-7002 | None:intergenic | 45.0% | |
| AGGGATATGAGGCAACTTGA+CGG | - | tig0029131:7315-7334 | None:intergenic | 45.0% | |
| ATCTTAGGACGAGGGATATG+AGG | - | tig0029131:7326-7345 | None:intergenic | 45.0% | |
| CAAAGCTTCATCTTAGGACG+AGG | - | tig0029131:7335-7354 | None:intergenic | 45.0% | |
| GTATACCTCTTCGACGTGTT+GGG | - | tig0029131:7372-7391 | None:intergenic | 45.0% | |
| TGTATACCTCTTCGACGTGT+TGG | - | tig0029131:7373-7392 | None:intergenic | 45.0% | |
| GGCAGTGATTAGAATGAGAG+AGG | + | tig0029131:7948-7967 | Msa1440890:intron | 45.0% | |
| CTTAGATGAAAAGGGCTTGG+CGG | - | tig0029131:8091-8110 | None:intergenic | 45.0% | |
| ! | GCCAAGCCCTTTTCATCTAA+GGG | + | tig0029131:8090-8109 | Msa1440890:intron | 45.0% |
| ACCCTTAGATGAAAAGGGCT+TGG | - | tig0029131:8094-8113 | None:intergenic | 45.0% | |
| ! | GCCCTTTTCATCTAAGGGTT+TGG | + | tig0029131:8095-8114 | Msa1440890:intron | 45.0% |
| AGGAAAATCAGATGGGAGCA+GGG | - | tig0029131:8242-8261 | None:intergenic | 45.0% | |
| AAGGAAAATCAGATGGGAGC+AGG | - | tig0029131:8243-8262 | None:intergenic | 45.0% | |
| !! | GGCACTGATCCAATTTCTGA+TGG | + | tig0029131:8342-8361 | Msa1440890:intron | 45.0% |
| CCTCAGAAGCTAAGAAAGCA+TGG | - | tig0029131:9355-9374 | None:intergenic | 45.0% | |
| CCATGCTTTCTTAGCTTCTG+AGG | + | tig0029131:9352-9371 | Msa1440890:CDS | 45.0% | |
| CTTGGTGAGAGACAAGTGTT+GGG | - | tig0029131:9770-9789 | None:intergenic | 45.0% | |
| TCTTGGTGAGAGACAAGTGT+TGG | - | tig0029131:9771-9790 | None:intergenic | 45.0% | |
| CTCTCACCAAGAATCTCTTG+AGG | + | tig0029131:9779-9798 | Msa1440890:CDS | 45.0% | |
| CCTTTCCCTCAAGAGATTCT+TGG | - | tig0029131:9788-9807 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGGAA+AGG | + | tig0029131:9785-9804 | Msa1440890:CDS | 45.0% | |
| GGGAAAGGTCAATGAGACAA+AGG | + | tig0029131:9800-9819 | Msa1440890:CDS | 45.0% | |
| GGTCAATGAGACAAAGGCTA+TGG | + | tig0029131:9806-9825 | Msa1440890:CDS | 45.0% | |
| !! | CTAAAGAAGGTGCTCTGCAT+GGG | + | tig0029131:9840-9859 | Msa1440890:CDS | 45.0% |
| CATGCTAGCATTTCACCGAA+GGG | - | tig0029131:10075-10094 | None:intergenic | 45.0% | |
| TCATGCTAGCATTTCACCGA+AGG | - | tig0029131:10076-10095 | None:intergenic | 45.0% | |
| ! | CGGATGAAAGAAAGCATGTC+AGG | - | tig0029131:10124-10143 | None:intergenic | 45.0% |
| CCGAACCTGAAATCAACAGT+AGG | - | tig0029131:10429-10448 | None:intergenic | 45.0% | |
| GCAGTGAGAGAAGCAATCTC+AGG | + | tig0029131:7182-7201 | Msa1440890:CDS | 50.0% | |
| ! | TTTTGCTGAGCTGAGAGAGC+AGG | + | tig0029131:7926-7945 | Msa1440890:intron | 50.0% |
| TTTGCTGAGCTGAGAGAGCA+GGG | + | tig0029131:7927-7946 | Msa1440890:intron | 50.0% | |
| ! | CGCCAAGCCCTTTTCATCTA+AGG | + | tig0029131:8089-8108 | Msa1440890:intron | 50.0% |
| GCAGGCAGAGAAGATAGGTT+TGG | + | tig0029131:9256-9275 | Msa1440890:intron | 50.0% | |
| TGAGACCAGGACCCAAAAGA+CGG | - | tig0029131:9397-9416 | None:intergenic | 50.0% | |
| TTTGGGTCCTGGTCTCAACA+AGG | + | tig0029131:9400-9419 | Msa1440890:CDS | 50.0% | |
| AGGCAGGCATGTGTTTCTCT+TGG | + | tig0029131:9420-9439 | Msa1440890:intron | 50.0% | |
| !! | GCTAAAGAAGGTGCTCTGCA+TGG | + | tig0029131:9839-9858 | Msa1440890:CDS | 50.0% |
| AGCTGTGGGCAATGTTAGCA+TGG | + | tig0029131:9866-9885 | Msa1440890:CDS | 50.0% | |
| AGAATGAGAGAGGCCTCGAG+TGG | + | tig0029131:7958-7977 | Msa1440890:intron | 55.0% | |
| GAATGAGAGAGGCCTCGAGT+GGG | + | tig0029131:7959-7978 | Msa1440890:intron | 55.0% | |
| GCATTGGGTATTCCCACTCG+AGG | - | tig0029131:7974-7993 | None:intergenic | 55.0% | |
| CGGCTAGACAACCGTAGAGA+TGG | + | tig0029131:8511-8530 | Msa1440890:intron | 55.0% | |
| !! | ATTCCCCGTCTTTTGGGTCC+TGG | + | tig0029131:9389-9408 | Msa1440890:CDS | 55.0% |
| AGACCAGGACCCAAAAGACG+GGG | - | tig0029131:9395-9414 | None:intergenic | 55.0% | |
| GAGACCAGGACCCAAAAGAC+GGG | - | tig0029131:9396-9415 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | - | tig0029131:9410-9429 | None:intergenic | 55.0% |
| CTCTGCATGGGAGTAGCTGT+GGG | + | tig0029131:9852-9871 | Msa1440890:CDS | 55.0% | |
| AGACGCCCAACACGTCGAAG+AGG | + | tig0029131:7364-7383 | Msa1440890:CDS | 60.0% | |
| GGTCCTGGTCTCAACAAGGC+AGG | + | tig0029131:9404-9423 | Msa1440890:CDS | 60.0% | |
| GCTCTGCATGGGAGTAGCTG+TGG | + | tig0029131:9851-9870 | Msa1440890:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029131 | gene | 6959 | 10745 | 6959 | ID=Msa1440890;Name=Msa1440890 |
| tig0029131 | mRNA | 6959 | 10745 | 6959 | ID=Msa1440890-mRNA-1;Parent=Msa1440890;Name=Msa1440890-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0.75|0.6|1|0.75|0.8|5|249|238 |
| tig0029131 | exon | 6959 | 7023 | 6959 | ID=Msa1440890-mRNA-1:exon:12470;Parent=Msa1440890-mRNA-1 |
| tig0029131 | exon | 7166 | 7385 | 7166 | ID=Msa1440890-mRNA-1:exon:12471;Parent=Msa1440890-mRNA-1 |
| tig0029131 | exon | 9260 | 9431 | 9260 | ID=Msa1440890-mRNA-1:exon:12472;Parent=Msa1440890-mRNA-1 |
| tig0029131 | exon | 9760 | 9965 | 9760 | ID=Msa1440890-mRNA-1:exon:12473;Parent=Msa1440890-mRNA-1 |
| tig0029131 | exon | 10443 | 10745 | 10443 | ID=Msa1440890-mRNA-1:exon:12474;Parent=Msa1440890-mRNA-1 |
| tig0029131 | CDS | 6959 | 7023 | 6959 | ID=Msa1440890-mRNA-1:cds;Parent=Msa1440890-mRNA-1 |
| tig0029131 | CDS | 7166 | 7385 | 7166 | ID=Msa1440890-mRNA-1:cds;Parent=Msa1440890-mRNA-1 |
| tig0029131 | CDS | 9260 | 9431 | 9260 | ID=Msa1440890-mRNA-1:cds;Parent=Msa1440890-mRNA-1 |
| tig0029131 | CDS | 9760 | 9965 | 9760 | ID=Msa1440890-mRNA-1:cds;Parent=Msa1440890-mRNA-1 |
| tig0029131 | CDS | 10443 | 10496 | 10443 | ID=Msa1440890-mRNA-1:cds;Parent=Msa1440890-mRNA-1 |
| tig0029131 | three_prime_UTR | 10497 | 10745 | 10497 | ID=Msa1440890-mRNA-1:three_prime_utr;Parent=Msa1440890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
