Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140890 | XP_003600923.1 | 99.083 | 218 | 0 | 1 | 1 | 218 | 1 | 216 | 1.31e-152 | 432 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140890 | sp|Q8VZB9|R10A1_ARATH | 88.073 | 218 | 24 | 1 | 1 | 218 | 1 | 216 | 2.45e-125 | 356 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140890 | B7FGL9 | 99.083 | 218 | 0 | 1 | 1 | 218 | 1 | 216 | 6.26e-153 | 432 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140890 | Msa0264010 | 0.819287 | 1.257288e-52 | -8.615850e-47 |
| Msa0140890 | Msa0483110 | 0.827618 | 1.416239e-54 | -8.615850e-47 |
| Msa0140890 | Msa1440890 | 0.887790 | 1.046952e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140890 | MtrunA17_Chr3g0113691 | 99.083 | 218 | 0 | 1 | 1 | 218 | 1 | 216 | 1.21e-156 | 432 |
| Msa0140890 | MtrunA17_Chr2g0321491 | 97.706 | 218 | 3 | 1 | 1 | 218 | 1 | 216 | 1.70e-155 | 429 |
| Msa0140890 | MtrunA17_Chr5g0399471 | 96.789 | 218 | 5 | 1 | 1 | 218 | 1 | 216 | 3.74e-154 | 426 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0140890 | AT1G08360.1 | 88.073 | 218 | 24 | 1 | 1 | 218 | 1 | 216 | 2.49e-126 | 356 |
| Msa0140890 | AT5G22440.1 | 89.041 | 219 | 21 | 2 | 1 | 218 | 1 | 217 | 2.69e-125 | 353 |
| Msa0140890 | AT5G22440.2 | 89.041 | 219 | 21 | 2 | 1 | 218 | 1 | 217 | 2.69e-125 | 353 |
| Msa0140890 | AT2G27530.2 | 87.156 | 218 | 26 | 1 | 1 | 218 | 1 | 216 | 4.02e-125 | 353 |
| Msa0140890 | AT2G27530.1 | 87.156 | 218 | 26 | 1 | 1 | 218 | 1 | 216 | 4.02e-125 | 353 |
Find 49 sgRNAs with CRISPR-Local
Find 199 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTCCCTCAAGAGATTCT+TGG | 0.221837 | 1_3:+75450991 | None:intergenic |
| TAAACAAATTCCCCGTCTTT+TGG | 0.235742 | 1_3:-75451394 | Msa0140890:CDS |
| GAGACCATTGAACTTCAAAT+TGG | 0.290529 | 1_3:-75453531 | Msa0140890:CDS |
| TAAGAAAGCATGGTACTTCT+TGG | 0.344589 | 1_3:+75451434 | None:intergenic |
| GCTACTCATCTCTTTATGAT+TGG | 0.377046 | 1_3:-75450105 | Msa0140890:three_prime_UTR |
| TTGGTTTACGAACCTCATTT+TGG | 0.377155 | 1_3:+75453762 | None:intergenic |
| GAGACCAATTTGAAGTTCAA+TGG | 0.404007 | 1_3:+75453527 | None:intergenic |
| AGCATACAAAGCTTCATCTT+AGG | 0.414122 | 1_3:+75453438 | None:intergenic |
| AAGATGAAGCTTTGTATGCT+TGG | 0.426202 | 1_3:-75453435 | Msa0140890:CDS |
| GAAGATAGGTTTGGAATCAA+TGG | 0.426241 | 1_3:-75451511 | Msa0140890:CDS |
| GTATACCTCTTCGACGTGTT+GGG | 0.429152 | 1_3:+75453407 | None:intergenic |
| CTTGTATCTGAAAAGTTCAA+TGG | 0.435518 | 1_3:-75450325 | Msa0140890:CDS |
| GCAGGCAGAGAAGATAGGTT+TGG | 0.444089 | 1_3:-75451520 | Msa0140890:intron |
| GCTTCTGCTACAGAGCAAAA+TGG | 0.454827 | 1_3:+75453796 | None:intergenic |
| CTCTGCATGGGAGTAGCTGT+GGG | 0.459921 | 1_3:-75450924 | Msa0140890:CDS |
| AATTTGCAGGCAGAGAAGAT+AGG | 0.475004 | 1_3:-75451525 | Msa0140890:intron |
| ATCTTAGGACGAGGGATATG+AGG | 0.482343 | 1_3:+75453453 | None:intergenic |
| TGTATACCTCTTCGACGTGT+TGG | 0.483872 | 1_3:+75453406 | None:intergenic |
| TTGTATCTGAAAAGTTCAAT+GGG | 0.491020 | 1_3:-75450324 | Msa0140890:CDS |
| GCTCTGCATGGGAGTAGCTG+TGG | 0.501869 | 1_3:-75450925 | Msa0140890:CDS |
| CCAAGAATCTCTTGAGGGAA+AGG | 0.504153 | 1_3:-75450991 | Msa0140890:CDS |
| AGAAGCAATCTCAGGAATCA+TGG | 0.510750 | 1_3:-75453586 | Msa0140890:CDS |
| TATTCGGACAAATGTATTGA+AGG | 0.516581 | 1_3:+75450230 | None:intergenic |
| GAGACCAGGACCCAAAAGAC+GGG | 0.519890 | 1_3:+75451383 | None:intergenic |
| GCAGTGAGAGAAGCAATCTC+AGG | 0.522147 | 1_3:-75453594 | Msa0140890:CDS |
| CAAAGCTTCATCTTAGGACG+AGG | 0.528067 | 1_3:+75453444 | None:intergenic |
| TCTTGGTGAGAGACAAGTGT+TGG | 0.535756 | 1_3:+75451008 | None:intergenic |
| GGTGAAATTTCAGCTAAAGA+AGG | 0.544360 | 1_3:-75450949 | Msa0140890:CDS |
| GCTAAAGAAGGTGCTCTGCA+TGG | 0.545816 | 1_3:-75450937 | Msa0140890:CDS |
| CTAAAGAAGGTGCTCTGCAT+GGG | 0.546643 | 1_3:-75450936 | Msa0140890:CDS |
| CTTGGTGAGAGACAAGTGTT+GGG | 0.551609 | 1_3:+75451009 | None:intergenic |
| TCTCACCAAGAATCTCTTGA+GGG | 0.555778 | 1_3:-75450996 | Msa0140890:CDS |
| GGTCCTGGTCTCAACAAGGC+AGG | 0.563119 | 1_3:-75451372 | Msa0140890:CDS |
| CCATGCTTTCTTAGCTTCTG+AGG | 0.565937 | 1_3:-75451424 | Msa0140890:CDS |
| AGGGATATGAGGCAACTTGA+CGG | 0.568095 | 1_3:+75453464 | None:intergenic |
| TTTGGGTCCTGGTCTCAACA+AGG | 0.572628 | 1_3:-75451376 | Msa0140890:CDS |
| GGTCAATGAGACAAAGGCTA+TGG | 0.576127 | 1_3:-75450970 | Msa0140890:CDS |
| TTGTAGTAAGCTTCAAAGTG+AGG | 0.594735 | 1_3:-75453616 | Msa0140890:intron |
| CCACAGATTCAACCAAAATG+AGG | 0.601275 | 1_3:-75453774 | Msa0140890:intron |
| CCTCAGAAGCTAAGAAAGCA+TGG | 0.604392 | 1_3:+75451424 | None:intergenic |
| AGCTGTGGGCAATGTTAGCA+TGG | 0.607215 | 1_3:-75450910 | Msa0140890:CDS |
| TGAGACCAGGACCCAAAAGA+CGG | 0.616750 | 1_3:+75451382 | None:intergenic |
| CTCTCACCAAGAATCTCTTG+AGG | 0.617687 | 1_3:-75450997 | Msa0140890:CDS |
| ATGCCTGCCTTGTTGAGACC+AGG | 0.624246 | 1_3:+75451369 | None:intergenic |
| GGGAAAGGTCAATGAGACAA+AGG | 0.641581 | 1_3:-75450976 | Msa0140890:CDS |
| AGACGCCCAACACGTCGAAG+AGG | 0.667465 | 1_3:-75453412 | Msa0140890:intron |
| AAAGCTTCATCTTAGGACGA+GGG | 0.681120 | 1_3:+75453445 | None:intergenic |
| ATAAGTTCCCTTAAAAGACA+CGG | 0.683519 | 1_3:+75450292 | None:intergenic |
| AGACCAGGACCCAAAAGACG+GGG | 0.716978 | 1_3:+75451384 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTGTATATTATTAAA+TGG | - | chr1_3:75452163-75452182 | Msa0140890:intron | 10.0% |
| !! | CAATAAACAAAACATTAAAT+TGG | + | chr1_3:75450517-75450536 | None:intergenic | 15.0% |
| !!! | TATAAGTTTTTACTGTTTTA+AGG | - | chr1_3:75450734-75450753 | Msa0140890:intron | 15.0% |
| !!! | ATAAGTTTTTACTGTTTTAA+GGG | - | chr1_3:75450735-75450754 | Msa0140890:intron | 15.0% |
| !! | AGATAGAATTTATCTTATAT+AGG | + | chr1_3:75450905-75450924 | None:intergenic | 15.0% |
| !! | TGTAAAATCCTAATATAAAT+CGG | - | chr1_3:75450924-75450943 | Msa0140890:CDS | 15.0% |
| !! | AGAATAAAAAAAATATGAGA+TGG | + | chr1_3:75451671-75451690 | None:intergenic | 15.0% |
| !! | GTATATTATTAAATGGATAA+TGG | - | chr1_3:75452170-75452189 | Msa0140890:intron | 15.0% |
| !!! | GAATTCATTTATAGATTTTT+AGG | + | chr1_3:75452672-75452691 | None:intergenic | 15.0% |
| !!! | AATTTTTAAACACTGATTTA+CGG | - | chr1_3:75453396-75453415 | Msa0140890:intron | 15.0% |
| !! | CTTAAATATTGAAAAATGAA+AGG | + | chr1_3:75453600-75453619 | None:intergenic | 15.0% |
| !! | AAAGAAATGAGATATCAAAT+TGG | + | chr1_3:75450846-75450865 | None:intergenic | 20.0% |
| !! | ATGTAATATTCTAATCTCAT+TGG | + | chr1_3:75450873-75450892 | None:intergenic | 20.0% |
| !! | GTACAATATATATCAATCAA+TGG | + | chr1_3:75451084-75451103 | None:intergenic | 20.0% |
| !!! | TGTTTTATGAATATTCGATT+AGG | - | chr1_3:75451898-75451917 | Msa0140890:intron | 20.0% |
| !!! | TTTAGTTTTGCAAATTTTGT+TGG | - | chr1_3:75452002-75452021 | Msa0140890:intron | 20.0% |
| !! | AATTCATTGAATGAAATACT+TGG | + | chr1_3:75452725-75452744 | None:intergenic | 20.0% |
| !! | TAAAATATACCTTTCAAACA+AGG | + | chr1_3:75452749-75452768 | None:intergenic | 20.0% |
| !! | ATTTCAGAATTCAACAATTA+TGG | - | chr1_3:75452786-75452805 | Msa0140890:intron | 20.0% |
| !! | GTGTTTAAAAATTTCAACTA+GGG | + | chr1_3:75453389-75453408 | None:intergenic | 20.0% |
| !! | AGTGTTTAAAAATTTCAACT+AGG | + | chr1_3:75453390-75453409 | None:intergenic | 20.0% |
| !!! | ATTTTTAAACACTGATTTAC+GGG | - | chr1_3:75453397-75453416 | Msa0140890:intron | 20.0% |
| !! | ATCAGAAAGCATAAATTAGA+TGG | + | chr1_3:75450145-75450164 | None:intergenic | 25.0% |
| ! | AAGAACAATGATAAGATCTA+CGG | + | chr1_3:75450489-75450508 | None:intergenic | 25.0% |
| ! | AAAATCCTAATATAAATCGG+TGG | - | chr1_3:75450927-75450946 | Msa0140890:CDS | 25.0% |
| ! | ACTACATTGTCATCATAAAA+AGG | - | chr1_3:75450982-75451001 | Msa0140890:CDS | 25.0% |
| ! | ATATATCAATCAATGGCATT+GGG | + | chr1_3:75451077-75451096 | None:intergenic | 25.0% |
| ! | TATATATCAATCAATGGCAT+TGG | + | chr1_3:75451078-75451097 | None:intergenic | 25.0% |
| !!! | TGTTTTTGTTTTTGTTGGTT+TGG | + | chr1_3:75451128-75451147 | None:intergenic | 25.0% |
| ! | ATAACAAAGGAAAATCAGAT+GGG | + | chr1_3:75451337-75451356 | None:intergenic | 25.0% |
| ! | ATCACTCATAAACATAACAA+AGG | + | chr1_3:75451350-75451369 | None:intergenic | 25.0% |
| ! | AAACAAACACTCTTTAAGTA+CGG | + | chr1_3:75451408-75451427 | None:intergenic | 25.0% |
| !!! | ACTTAAAGAGTGTTTGTTTT+TGG | - | chr1_3:75451409-75451428 | Msa0140890:CDS | 25.0% |
| ! | AACATGATTTCCTTTACAAA+AGG | - | chr1_3:75451530-75451549 | Msa0140890:intron | 25.0% |
| !! | TCTGAATGTTTTCAGAAAAA+CGG | - | chr1_3:75451554-75451573 | Msa0140890:intron | 25.0% |
| ! | ATCACATATTGTACAAATTC+AGG | + | chr1_3:75451782-75451801 | None:intergenic | 25.0% |
| ! | CGAATATTCATAAAACAGTT+TGG | + | chr1_3:75451895-75451914 | None:intergenic | 25.0% |
| ! | GGAAGTTAAAAACAAAGATA+AGG | + | chr1_3:75451980-75451999 | None:intergenic | 25.0% |
| ! | CAAAATTTGCAAAACTAAAC+TGG | + | chr1_3:75452001-75452020 | None:intergenic | 25.0% |
| ! | AAGATTAAACACAAATGACT+AGG | + | chr1_3:75452312-75452331 | None:intergenic | 25.0% |
| !! | ATTTTTGTTAAGCTTCTTCA+AGG | + | chr1_3:75452388-75452407 | None:intergenic | 25.0% |
| ! | GCTTAACAAAAATAAGAAGT+TGG | - | chr1_3:75452395-75452414 | Msa0140890:intron | 25.0% |
| !! | TAGGTTTTACGTTTATTTAC+CGG | - | chr1_3:75452533-75452552 | Msa0140890:intron | 25.0% |
| !!! | GAATTCTGAAATCTTAAGTA+CGG | + | chr1_3:75452778-75452797 | None:intergenic | 25.0% |
| !! | TATGTTTTGCATTACTTTAC+AGG | - | chr1_3:75452826-75452845 | Msa0140890:intron | 25.0% |
| !! | ATGTTTTGCATTACTTTACA+GGG | - | chr1_3:75452827-75452846 | Msa0140890:intron | 25.0% |
| !! | ATAACTTGCACAAAAAAGAA+AGG | + | chr1_3:75453117-75453136 | None:intergenic | 25.0% |
| ! | AATTCAAGGAAAGGAAATAA+AGG | + | chr1_3:75453246-75453265 | None:intergenic | 25.0% |
| ! | AAAAAATGTGACCTCAAATT+AGG | - | chr1_3:75453280-75453299 | Msa0140890:intron | 25.0% |
| ! | AAAAATGTGACCTCAAATTA+GGG | - | chr1_3:75453281-75453300 | Msa0140890:intron | 25.0% |
| ! | GAAGAAACAACAAAAAAATG+TGG | + | chr1_3:75453441-75453460 | None:intergenic | 25.0% |
| ! | TTGTATCTGAAAAGTTCAAT+GGG | - | chr1_3:75453540-75453559 | Msa0140890:CDS | 25.0% |
| !! | GAAGTTTTTATCAAGCTATT+CGG | + | chr1_3:75453653-75453672 | None:intergenic | 25.0% |
| ! | GGAAAGATGAATCGATTTAT+TGG | + | chr1_3:75450124-75450143 | None:intergenic | 30.0% |
| !! | TCTGATTGATTTGTGTTTGA+TGG | - | chr1_3:75450223-75450242 | Msa0140890:three_prime_UTR | 30.0% |
| ! | AAACTTGCGATTTTTCTCTT+TGG | + | chr1_3:75450310-75450329 | None:intergenic | 30.0% |
| ! | TGAAACGCTTATCTTTTTGT+GGG | + | chr1_3:75450374-75450393 | None:intergenic | 30.0% |
| TTACGCTACATAGATATATC+TGG | - | chr1_3:75450647-75450666 | Msa0140890:intron | 30.0% | |
| ! | TTCCACTATCCTTTTGTTAA+GGG | - | chr1_3:75450684-75450703 | Msa0140890:intron | 30.0% |
| AAATTGCATCCCTTAACAAA+AGG | + | chr1_3:75450696-75450715 | None:intergenic | 30.0% | |
| TTGCAACATTCAATAAAGAC+GGG | + | chr1_3:75450809-75450828 | None:intergenic | 30.0% | |
| CTTGCAACATTCAATAAAGA+CGG | + | chr1_3:75450810-75450829 | None:intergenic | 30.0% | |
| TCTTTATTGAATGTTGCAAG+AGG | - | chr1_3:75450810-75450829 | Msa0140890:intron | 30.0% | |
| !!! | GTTGGTGTTTTTGTTTTTGT+TGG | + | chr1_3:75451133-75451152 | None:intergenic | 30.0% |
| AAAAACCCAATTCAACAGAA+GGG | + | chr1_3:75451267-75451286 | None:intergenic | 30.0% | |
| CATAACAAAGGAAAATCAGA+TGG | + | chr1_3:75451338-75451357 | None:intergenic | 30.0% | |
| TTGTTCTCTTCTTGAAGATT+CGG | - | chr1_3:75451462-75451481 | Msa0140890:CDS | 30.0% | |
| ! | ACATTCAGATCCTTTTGTAA+AGG | + | chr1_3:75451543-75451562 | None:intergenic | 30.0% |
| ! | AATGTTTTCAGAAAAACGGT+GGG | - | chr1_3:75451558-75451577 | Msa0140890:intron | 30.0% |
| AAAAAAAAACTCAGCATCTG+TGG | + | chr1_3:75451628-75451647 | None:intergenic | 30.0% | |
| ATGAGATGGAATTAGTAGTA+TGG | + | chr1_3:75451657-75451676 | None:intergenic | 30.0% | |
| TAATTGCTTGTCTAGGAATT+TGG | + | chr1_3:75451703-75451722 | None:intergenic | 30.0% | |
| TAGTCATTAATTGCTTGTCT+AGG | + | chr1_3:75451710-75451729 | None:intergenic | 30.0% | |
| ATATTGTACAAATTCAGGAG+TGG | + | chr1_3:75451777-75451796 | None:intergenic | 30.0% | |
| ATCACAAGTTCAAATACTCA+TGG | - | chr1_3:75451932-75451951 | Msa0140890:intron | 30.0% | |
| TGAACAGTGATTACACAATT+AGG | + | chr1_3:75452096-75452115 | None:intergenic | 30.0% | |
| TAATTGTGTAATCACTGTTC+AGG | - | chr1_3:75452095-75452114 | Msa0140890:intron | 30.0% | |
| AAAAGCTAAACACTCATTTC+CGG | + | chr1_3:75452555-75452574 | None:intergenic | 30.0% | |
| !! | AATGAATTGCCTTGTTTGAA+AGG | - | chr1_3:75452737-75452756 | Msa0140890:intron | 30.0% |
| TTGTGCAACGATGAAATAAA+AGG | + | chr1_3:75453066-75453085 | None:intergenic | 30.0% | |
| AAATAAAGGAAACATGTGTG+CGG | + | chr1_3:75453232-75453251 | None:intergenic | 30.0% | |
| TATTACAGCAATTCAAGGAA+AGG | + | chr1_3:75453255-75453274 | None:intergenic | 30.0% | |
| ACAGATATTACAGCAATTCA+AGG | + | chr1_3:75453260-75453279 | None:intergenic | 30.0% | |
| !! | TGTTGTTTCTTCAATATCCT+AGG | - | chr1_3:75453449-75453468 | Msa0140890:CDS | 30.0% |
| !! | TATAACCTACTGTTGATTTC+AGG | - | chr1_3:75453509-75453528 | Msa0140890:CDS | 30.0% |
| CTTGTATCTGAAAAGTTCAA+TGG | - | chr1_3:75453539-75453558 | Msa0140890:CDS | 30.0% | |
| ! | AAATCTTACCGTGTCTTTTA+AGG | - | chr1_3:75453564-75453583 | Msa0140890:CDS | 30.0% |
| ! | AATCTTACCGTGTCTTTTAA+GGG | - | chr1_3:75453565-75453584 | Msa0140890:CDS | 30.0% |
| ATAAGTTCCCTTAAAAGACA+CGG | + | chr1_3:75453575-75453594 | None:intergenic | 30.0% | |
| TATTCGGACAAATGTATTGA+AGG | + | chr1_3:75453637-75453656 | None:intergenic | 30.0% | |
| ! | TCATCTGTTTACAATTTTGC+TGG | - | chr1_3:75453671-75453690 | Msa0140890:intron | 30.0% |
| ! | TTGGTTTACGAACCTCATTT+TGG | + | chr1_3:75450105-75450124 | None:intergenic | 35.0% |
| TTGTAGTAAGCTTCAAAGTG+AGG | - | chr1_3:75450248-75450267 | Msa0140890:three_prime_UTR | 35.0% | |
| GAGACCATTGAACTTCAAAT+TGG | - | chr1_3:75450333-75450352 | Msa0140890:CDS | 35.0% | |
| ! | GAGACCAATTTGAAGTTCAA+TGG | + | chr1_3:75450340-75450359 | None:intergenic | 35.0% |
| ! | CTGAAACGCTTATCTTTTTG+TGG | + | chr1_3:75450375-75450394 | None:intergenic | 35.0% |
| CAAAAAGATAAGCGTTTCAG+TGG | - | chr1_3:75450375-75450394 | Msa0140890:intron | 35.0% | |
| AGCATACAAAGCTTCATCTT+AGG | + | chr1_3:75450429-75450448 | None:intergenic | 35.0% | |
| ! | AAGATGAAGCTTTGTATGCT+TGG | - | chr1_3:75450429-75450448 | Msa0140890:intron | 35.0% |
| ! | CTTCCACTATCCTTTTGTTA+AGG | - | chr1_3:75450683-75450702 | Msa0140890:intron | 35.0% |
| ATCCCTTAACAAAAGGATAG+TGG | + | chr1_3:75450689-75450708 | None:intergenic | 35.0% | |
| !! | TAGCACCACCGATTTATATT+AGG | + | chr1_3:75450935-75450954 | None:intergenic | 35.0% |
| GTTTGTGATTTAGAGGAAAG+TGG | + | chr1_3:75451106-75451125 | None:intergenic | 35.0% | |
| !! | TGGTTTGGTTTGTGATTTAG+AGG | + | chr1_3:75451113-75451132 | None:intergenic | 35.0% |
| ACCAAACCCTTAGATGAAAA+GGG | + | chr1_3:75451187-75451206 | None:intergenic | 35.0% | |
| AACCAAACCCTTAGATGAAA+AGG | + | chr1_3:75451188-75451207 | None:intergenic | 35.0% | |
| !! | TTCATCTAAGGGTTTGGTTT+TGG | - | chr1_3:75451189-75451208 | Msa0140890:intron | 35.0% |
| GAAAAACCCAATTCAACAGA+AGG | + | chr1_3:75451268-75451287 | None:intergenic | 35.0% | |
| ! | GAATGTTTTCAGAAAAACGG+TGG | - | chr1_3:75451557-75451576 | Msa0140890:intron | 35.0% |
| !! | ACGGTGGGTTTGTTATAATT+AGG | - | chr1_3:75451573-75451592 | Msa0140890:intron | 35.0% |
| !! | GGTTTGTTATAATTAGGCAG+CGG | - | chr1_3:75451579-75451598 | Msa0140890:intron | 35.0% |
| ! | GAATATTCGATTAGGTGTTG+TGG | - | chr1_3:75451906-75451925 | Msa0140890:intron | 35.0% |
| !! | GGAAAGTGTTGTCATTATGT+AGG | - | chr1_3:75452116-75452135 | Msa0140890:intron | 35.0% |
| GACAAATAAGTTACGACAGT+AGG | - | chr1_3:75452225-75452244 | Msa0140890:intron | 35.0% | |
| ACAAATGACTAGGCAAAAAC+TGG | + | chr1_3:75452302-75452321 | None:intergenic | 35.0% | |
| AATCTTTCACTCCAATTTGC+AGG | - | chr1_3:75452326-75452345 | Msa0140890:intron | 35.0% | |
| ! | GAAGATAGGTTTGGAATCAA+TGG | - | chr1_3:75452353-75452372 | Msa0140890:intron | 35.0% |
| ! | TAAGAAAGCATGGTACTTCT+TGG | + | chr1_3:75452433-75452452 | None:intergenic | 35.0% |
| ! | TAAACAAATTCCCCGTCTTT+TGG | - | chr1_3:75452470-75452489 | Msa0140890:intron | 35.0% |
| ! | AAACAAATTCCCCGTCTTTT+GGG | - | chr1_3:75452471-75452490 | Msa0140890:intron | 35.0% |
| GGTGAAATTTCAGCTAAAGA+AGG | - | chr1_3:75452915-75452934 | Msa0140890:intron | 35.0% | |
| !!! | TCTTTTTCAACAAGGAGACA+AGG | + | chr1_3:75453023-75453042 | None:intergenic | 35.0% |
| TCTCCTTGTTGAAAAAGAAC+TGG | - | chr1_3:75453025-75453044 | Msa0140890:intron | 35.0% | |
| ATGATTTCTTTGATGCCCTT+CGG | - | chr1_3:75453145-75453164 | Msa0140890:intron | 35.0% | |
| AACCACTTATCCCTAATTTG+AGG | + | chr1_3:75453294-75453313 | None:intergenic | 35.0% | |
| CAATCAGACTGAATATTCCT+AGG | + | chr1_3:75453469-75453488 | None:intergenic | 35.0% | |
| GCTACTCATCTCTTTATGAT+TGG | - | chr1_3:75453759-75453778 | Msa0140890:intron | 35.0% | |
| !!! | CCTCATTTTGGTTGAATCTG+TGG | + | chr1_3:75450093-75450112 | None:intergenic | 40.0% |
| CCACAGATTCAACCAAAATG+AGG | - | chr1_3:75450090-75450109 | Msa0140890:three_prime_UTR | 40.0% | |
| AGAAGCAATCTCAGGAATCA+TGG | - | chr1_3:75450278-75450297 | Msa0140890:three_prime_UTR | 40.0% | |
| AAAGCTTCATCTTAGGACGA+GGG | + | chr1_3:75450422-75450441 | None:intergenic | 40.0% | |
| !! | ACAAAAGGATAGTGGAAGCA+TGG | + | chr1_3:75450681-75450700 | None:intergenic | 40.0% |
| TCAAGATCTGAGCTTCTTGT+TGG | + | chr1_3:75451151-75451170 | None:intergenic | 40.0% | |
| ACAAGAAGCTCAGATCTTGA+AGG | - | chr1_3:75451151-75451170 | Msa0140890:intron | 40.0% | |
| TAACGTCCCTTCTGTTGAAT+TGG | - | chr1_3:75451258-75451277 | Msa0140890:intron | 40.0% | |
| AACGTCCCTTCTGTTGAATT+GGG | - | chr1_3:75451259-75451278 | Msa0140890:intron | 40.0% | |
| ! | GCACTGATCCAATTTCTGAT+GGG | - | chr1_3:75451431-75451450 | Msa0140890:CDS | 40.0% |
| CACTGATCCAATTTCTGATG+GGG | - | chr1_3:75451432-75451451 | Msa0140890:CDS | 40.0% | |
| TGTGTTTCCCCATCAGAAAT+TGG | + | chr1_3:75451442-75451461 | None:intergenic | 40.0% | |
| ATCTGTGGATTCCATCTCTA+CGG | + | chr1_3:75451613-75451632 | None:intergenic | 40.0% | |
| TTATGTAGGTTCAACAACGC+TGG | - | chr1_3:75452130-75452149 | Msa0140890:intron | 40.0% | |
| ATGACTAGGCAAAAACTGGA+AGG | + | chr1_3:75452298-75452317 | None:intergenic | 40.0% | |
| TATCTTCTCTGCCTGCAAAT+TGG | + | chr1_3:75452340-75452359 | None:intergenic | 40.0% | |
| AATTTGCAGGCAGAGAAGAT+AGG | - | chr1_3:75452339-75452358 | Msa0140890:intron | 40.0% | |
| GCATGTGTTTCTCTTGGTTT+AGG | - | chr1_3:75452514-75452533 | Msa0140890:intron | 40.0% | |
| TCTCACCAAGAATCTCTTGA+GGG | - | chr1_3:75452868-75452887 | Msa0140890:intron | 40.0% | |
| !!! | CTGCCAGTTCTTTTTCAACA+AGG | + | chr1_3:75453031-75453050 | None:intergenic | 40.0% |
| GACCTCAAATTAGGGATAAG+TGG | - | chr1_3:75453289-75453308 | Msa0140890:intron | 40.0% | |
| !! | CCTACTGTTGATTTCAGGTT+CGG | - | chr1_3:75453514-75453533 | Msa0140890:CDS | 40.0% |
| GCTTCTGCTACAGAGCAAAA+TGG | + | chr1_3:75450071-75450090 | None:intergenic | 45.0% | |
| AGGGATATGAGGCAACTTGA+CGG | + | chr1_3:75450403-75450422 | None:intergenic | 45.0% | |
| ATCTTAGGACGAGGGATATG+AGG | + | chr1_3:75450414-75450433 | None:intergenic | 45.0% | |
| CAAAGCTTCATCTTAGGACG+AGG | + | chr1_3:75450423-75450442 | None:intergenic | 45.0% | |
| GTATACCTCTTCGACGTGTT+GGG | + | chr1_3:75450460-75450479 | None:intergenic | 45.0% | |
| TGTATACCTCTTCGACGTGT+TGG | + | chr1_3:75450461-75450480 | None:intergenic | 45.0% | |
| GGCAGTGATTAGAATGAGAG+AGG | - | chr1_3:75451036-75451055 | Msa0140890:intron | 45.0% | |
| CTTAGATGAAAAGGGCTTGG+CGG | + | chr1_3:75451179-75451198 | None:intergenic | 45.0% | |
| ! | GCCAAGCCCTTTTCATCTAA+GGG | - | chr1_3:75451178-75451197 | Msa0140890:intron | 45.0% |
| ACCCTTAGATGAAAAGGGCT+TGG | + | chr1_3:75451182-75451201 | None:intergenic | 45.0% | |
| ! | GCCCTTTTCATCTAAGGGTT+TGG | - | chr1_3:75451183-75451202 | Msa0140890:intron | 45.0% |
| AGGAAAATCAGATGGGAGCA+GGG | + | chr1_3:75451330-75451349 | None:intergenic | 45.0% | |
| AAGGAAAATCAGATGGGAGC+AGG | + | chr1_3:75451331-75451350 | None:intergenic | 45.0% | |
| !! | GGCACTGATCCAATTTCTGA+TGG | - | chr1_3:75451430-75451449 | Msa0140890:CDS | 45.0% |
| CCTCAGAAGCTAAGAAAGCA+TGG | + | chr1_3:75452443-75452462 | None:intergenic | 45.0% | |
| CCATGCTTTCTTAGCTTCTG+AGG | - | chr1_3:75452440-75452459 | Msa0140890:intron | 45.0% | |
| CTTGGTGAGAGACAAGTGTT+GGG | + | chr1_3:75452858-75452877 | None:intergenic | 45.0% | |
| TCTTGGTGAGAGACAAGTGT+TGG | + | chr1_3:75452859-75452878 | None:intergenic | 45.0% | |
| CTCTCACCAAGAATCTCTTG+AGG | - | chr1_3:75452867-75452886 | Msa0140890:intron | 45.0% | |
| CCTTTCCCTCAAGAGATTCT+TGG | + | chr1_3:75452876-75452895 | None:intergenic | 45.0% | |
| CCAAGAATCTCTTGAGGGAA+AGG | - | chr1_3:75452873-75452892 | Msa0140890:intron | 45.0% | |
| GGGAAAGGTCAATGAGACAA+AGG | - | chr1_3:75452888-75452907 | Msa0140890:intron | 45.0% | |
| GGTCAATGAGACAAAGGCTA+TGG | - | chr1_3:75452894-75452913 | Msa0140890:intron | 45.0% | |
| !! | CTAAAGAAGGTGCTCTGCAT+GGG | - | chr1_3:75452928-75452947 | Msa0140890:intron | 45.0% |
| CATGCTAGCATTTCACCGAA+GGG | + | chr1_3:75453163-75453182 | None:intergenic | 45.0% | |
| TCATGCTAGCATTTCACCGA+AGG | + | chr1_3:75453164-75453183 | None:intergenic | 45.0% | |
| ! | CGGATGAAAGAAAGCATGTC+AGG | + | chr1_3:75453212-75453231 | None:intergenic | 45.0% |
| CCGAACCTGAAATCAACAGT+AGG | + | chr1_3:75453517-75453536 | None:intergenic | 45.0% | |
| GCAGTGAGAGAAGCAATCTC+AGG | - | chr1_3:75450270-75450289 | Msa0140890:three_prime_UTR | 50.0% | |
| ! | TTTTGCTGAGCTGAGAGAGC+AGG | - | chr1_3:75451014-75451033 | Msa0140890:CDS | 50.0% |
| TTTGCTGAGCTGAGAGAGCA+GGG | - | chr1_3:75451015-75451034 | Msa0140890:CDS | 50.0% | |
| ! | CGCCAAGCCCTTTTCATCTA+AGG | - | chr1_3:75451177-75451196 | Msa0140890:intron | 50.0% |
| GCAGGCAGAGAAGATAGGTT+TGG | - | chr1_3:75452344-75452363 | Msa0140890:intron | 50.0% | |
| TGAGACCAGGACCCAAAAGA+CGG | + | chr1_3:75452485-75452504 | None:intergenic | 50.0% | |
| TTTGGGTCCTGGTCTCAACA+AGG | - | chr1_3:75452488-75452507 | Msa0140890:intron | 50.0% | |
| AGGCAGGCATGTGTTTCTCT+TGG | - | chr1_3:75452508-75452527 | Msa0140890:intron | 50.0% | |
| !! | GCTAAAGAAGGTGCTCTGCA+TGG | - | chr1_3:75452927-75452946 | Msa0140890:intron | 50.0% |
| AGCTGTGGGCAATGTTAGCA+TGG | - | chr1_3:75452954-75452973 | Msa0140890:intron | 50.0% | |
| AGAATGAGAGAGGCCTCGAG+TGG | - | chr1_3:75451046-75451065 | Msa0140890:intron | 55.0% | |
| GAATGAGAGAGGCCTCGAGT+GGG | - | chr1_3:75451047-75451066 | Msa0140890:intron | 55.0% | |
| GCATTGGGTATTCCCACTCG+AGG | + | chr1_3:75451062-75451081 | None:intergenic | 55.0% | |
| CGGCTAGACAACCGTAGAGA+TGG | - | chr1_3:75451599-75451618 | Msa0140890:intron | 55.0% | |
| !! | ATTCCCCGTCTTTTGGGTCC+TGG | - | chr1_3:75452477-75452496 | Msa0140890:intron | 55.0% |
| AGACCAGGACCCAAAAGACG+GGG | + | chr1_3:75452483-75452502 | None:intergenic | 55.0% | |
| GAGACCAGGACCCAAAAGAC+GGG | + | chr1_3:75452484-75452503 | None:intergenic | 55.0% | |
| ! | ATGCCTGCCTTGTTGAGACC+AGG | + | chr1_3:75452498-75452517 | None:intergenic | 55.0% |
| CTCTGCATGGGAGTAGCTGT+GGG | - | chr1_3:75452940-75452959 | Msa0140890:intron | 55.0% | |
| AGACGCCCAACACGTCGAAG+AGG | - | chr1_3:75450452-75450471 | Msa0140890:intron | 60.0% | |
| GGTCCTGGTCTCAACAAGGC+AGG | - | chr1_3:75452492-75452511 | Msa0140890:intron | 60.0% | |
| GCTCTGCATGGGAGTAGCTG+TGG | - | chr1_3:75452939-75452958 | Msa0140890:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 75450053 | 75453833 | 75450053 | ID=Msa0140890;Name=Msa0140890 |
| chr1_3 | mRNA | 75450053 | 75453833 | 75450053 | ID=Msa0140890-mRNA-1;Parent=Msa0140890;Name=Msa0140890-mRNA-1;_AED=0.03;_eAED=0.03;_QI=54|0.75|0.8|1|0.75|0.8|5|249|218 |
| chr1_3 | exon | 75450053 | 75450355 | 75450053 | ID=Msa0140890-mRNA-1:exon:26312;Parent=Msa0140890-mRNA-1 |
| chr1_3 | exon | 75450833 | 75451038 | 75450833 | ID=Msa0140890-mRNA-1:exon:26311;Parent=Msa0140890-mRNA-1 |
| chr1_3 | exon | 75451367 | 75451538 | 75451367 | ID=Msa0140890-mRNA-1:exon:26310;Parent=Msa0140890-mRNA-1 |
| chr1_3 | exon | 75453413 | 75453632 | 75453413 | ID=Msa0140890-mRNA-1:exon:26309;Parent=Msa0140890-mRNA-1 |
| chr1_3 | exon | 75453775 | 75453833 | 75453775 | ID=Msa0140890-mRNA-1:exon:26308;Parent=Msa0140890-mRNA-1 |
| chr1_3 | five_prime_UTR | 75453780 | 75453833 | 75453780 | ID=Msa0140890-mRNA-1:five_prime_utr;Parent=Msa0140890-mRNA-1 |
| chr1_3 | CDS | 75453775 | 75453779 | 75453775 | ID=Msa0140890-mRNA-1:cds;Parent=Msa0140890-mRNA-1 |
| chr1_3 | CDS | 75453413 | 75453632 | 75453413 | ID=Msa0140890-mRNA-1:cds;Parent=Msa0140890-mRNA-1 |
| chr1_3 | CDS | 75451367 | 75451538 | 75451367 | ID=Msa0140890-mRNA-1:cds;Parent=Msa0140890-mRNA-1 |
| chr1_3 | CDS | 75450833 | 75451038 | 75450833 | ID=Msa0140890-mRNA-1:cds;Parent=Msa0140890-mRNA-1 |
| chr1_3 | CDS | 75450302 | 75450355 | 75450302 | ID=Msa0140890-mRNA-1:cds;Parent=Msa0140890-mRNA-1 |
| chr1_3 | three_prime_UTR | 75450053 | 75450301 | 75450053 | ID=Msa0140890-mRNA-1:three_prime_utr;Parent=Msa0140890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
