Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441350 | I3TAB3 | 78.295 | 129 | 14 | 1 | 1 | 115 | 1 | 129 | 3.74e-63 | 203 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1441350 | TF | BBR-BPC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1153980 | Msa1441350 | 0.979917 | 4.952549e-149 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1441350 | MtrunA17_Chr8g0375531 | 78.295 | 129 | 14 | 1 | 1 | 115 | 1 | 129 | 7.21e-67 | 203 |
| Msa1441350 | MtrunA17_Chr2g0296951 | 92.500 | 40 | 3 | 0 | 64 | 103 | 1 | 40 | 8.85e-21 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 84 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGCTTCCTGGGCTTCT+TGG | 0.137623 | tig0029300:-14339 | None:intergenic |
| TCTGGAAGAACATCATAATT+TGG | 0.181172 | tig0029300:-14204 | None:intergenic |
| TGCTTTATGTGCAGGTATAT+TGG | 0.260394 | tig0029300:+15754 | Msa1441350:intron |
| TTCCTGGGCTTCTTGGCTTT+TGG | 0.263930 | tig0029300:-14332 | None:intergenic |
| TCCAATATGTGTTCTCTTCC+CGG | 0.270539 | tig0029300:+12660 | None:intergenic |
| TTCACTGTGTATAATGATTC+TGG | 0.279049 | tig0029300:+14382 | Msa1441350:three_prime_UTR |
| AATATCATCCTTCAGCTTCC+TGG | 0.309433 | tig0029300:-14348 | None:intergenic |
| GCCACGAGATTGTGCTGTTT+CGG | 0.312141 | tig0029300:+14101 | Msa1441350:CDS |
| TTTACTATGTGAGGGATAAC+TGG | 0.316412 | tig0029300:+14139 | Msa1441350:CDS |
| GGGCACACTTTGCTTCAAAT+TGG | 0.322688 | tig0029300:-15912 | None:intergenic |
| ATTTAGTAATTGATGGCATA+TGG | 0.328250 | tig0029300:-14789 | None:intergenic |
| AGTGGCATTTGTAGTATCTA+AGG | 0.333736 | tig0029300:-15934 | None:intergenic |
| GAGAGTGCTTGTGATGCTTC+TGG | 0.341012 | tig0029300:-14222 | None:intergenic |
| TGTGAAGTGGAGTAGAATAT+TGG | 0.341376 | tig0029300:-12713 | None:intergenic |
| TTTCATTTAACACCGATTCA+TGG | 0.342823 | tig0029300:+14421 | Msa1441350:three_prime_UTR |
| CCGCGTCATTTAGTAATTGA+TGG | 0.345675 | tig0029300:-14796 | None:intergenic |
| TGCACTTTCACGATCATTCA+TGG | 0.350319 | tig0029300:-14058 | None:intergenic |
| GTCGAAGAAAAGGAAGTCTA+AGG | 0.355045 | tig0029300:+14295 | Msa1441350:CDS |
| TTGTGAAGAGACCGCTTTGC+CGG | 0.364302 | tig0029300:-12679 | None:intergenic |
| ATCATAGAGTTGGAGTCTAA+TGG | 0.367763 | tig0029300:+15830 | Msa1441350:three_prime_UTR |
| ACATACTCAAACACAAATTC+TGG | 0.377907 | tig0029300:+14843 | Msa1441350:three_prime_UTR |
| ATCACAAGCACTCTCCTTGC+CGG | 0.385439 | tig0029300:+14230 | Msa1441350:CDS |
| CCCTTCAAGGGCGGGAATCT+CGG | 0.387204 | tig0029300:+14018 | Msa1441350:CDS |
| GCATCAGGCTGCGGTATAAC+CGG | 0.404926 | tig0029300:-14249 | None:intergenic |
| AAATACAGAGTATTATGAAT+TGG | 0.412732 | tig0029300:+15805 | Msa1441350:three_prime_UTR |
| GGGTTACTATGAACCCTTCA+AGG | 0.417533 | tig0029300:+14005 | Msa1441350:CDS |
| TTCACATTTCTCGATGCATC+AGG | 0.424410 | tig0029300:-14264 | None:intergenic |
| CACACTTTGCTTCAAATTGG+TGG | 0.434130 | tig0029300:-15909 | None:intergenic |
| TCATAGAGTTGGAGTCTAAT+GGG | 0.438635 | tig0029300:+15831 | Msa1441350:three_prime_UTR |
| TGAATTGGTTATCATAGAGT+TGG | 0.448370 | tig0029300:+15820 | Msa1441350:three_prime_UTR |
| CTCTTCCCCGTAACCTTCCA+TGG | 0.452063 | tig0029300:+12743 | Msa1441350:five_prime_UTR |
| TATTGATAAACCTATGTCTC+GGG | 0.452192 | tig0029300:-14167 | None:intergenic |
| GCCGGGAAGAGAACACATAT+TGG | 0.454781 | tig0029300:-12661 | None:intergenic |
| ATGTTACCATGGAAGGTTAC+GGG | 0.456263 | tig0029300:-12749 | None:intergenic |
| ACCGAGATTCCCGCCCTTGA+AGG | 0.457782 | tig0029300:-14019 | None:intergenic |
| GGGTTCATAGTAACCCCAAT+TGG | 0.466238 | tig0029300:-13998 | None:intergenic |
| ATGTGCTGAATATGCCCAAT+TGG | 0.468228 | tig0029300:+13983 | Msa1441350:CDS |
| ATATCATCCTTCAGCTTCCT+GGG | 0.468814 | tig0029300:-14347 | None:intergenic |
| CTCCAAAAGCCAAGAAGCCC+AGG | 0.474778 | tig0029300:+14330 | Msa1441350:CDS |
| GAGATTACCCATCCATGAAT+CGG | 0.478602 | tig0029300:-14433 | None:intergenic |
| TTTAGTAATTGATGGCATAT+GGG | 0.491083 | tig0029300:-14788 | None:intergenic |
| AATGATCGTGAAAGTGCAAA+TGG | 0.492328 | tig0029300:+14063 | Msa1441350:CDS |
| ATCTCGTGGCTGAAAGGGCA+AGG | 0.493413 | tig0029300:-14088 | None:intergenic |
| AGCACAATCTCGTGGCTGAA+AGG | 0.494131 | tig0029300:-14094 | None:intergenic |
| TTTGTGTGTTCTAAGGTAGA+TGG | 0.495757 | tig0029300:+13160 | Msa1441350:five_prime_UTR |
| GGTTCATAGTAACCCCAATT+GGG | 0.512276 | tig0029300:-13997 | None:intergenic |
| ATTTAACACCGATTCATGGA+TGG | 0.513993 | tig0029300:+14425 | Msa1441350:three_prime_UTR |
| TTTAACACCGATTCATGGAT+GGG | 0.515160 | tig0029300:+14426 | Msa1441350:three_prime_UTR |
| TGTGCTGAATATGCCCAATT+GGG | 0.516384 | tig0029300:+13984 | Msa1441350:CDS |
| GCACAATCTCGTGGCTGAAA+GGG | 0.516986 | tig0029300:-14093 | None:intergenic |
| GTGGCATTTGTAGTATCTAA+GGG | 0.517719 | tig0029300:-15933 | None:intergenic |
| TGTGAAGAGACCGCTTTGCC+GGG | 0.518074 | tig0029300:-12678 | None:intergenic |
| ATATTGATAAACCTATGTCT+CGG | 0.524517 | tig0029300:-14168 | None:intergenic |
| CTTTCACGATCATTCATGGC+AGG | 0.535958 | tig0029300:-14054 | None:intergenic |
| GAAGAGAACGCTTTGTGAAG+TGG | 0.541069 | tig0029300:-12726 | None:intergenic |
| GATGTTACCATGGAAGGTTA+CGG | 0.543360 | tig0029300:-12750 | None:intergenic |
| CCGAGATTCCCGCCCTTGAA+GGG | 0.543506 | tig0029300:-14018 | None:intergenic |
| GGTTACGATGTTACCATGGA+AGG | 0.548670 | tig0029300:-12756 | None:intergenic |
| ACTGGATGACCCCGAGACAT+AGG | 0.551501 | tig0029300:+14157 | Msa1441350:CDS |
| AAGGTGGCAAGTCGAAGAAA+AGG | 0.553427 | tig0029300:+14285 | Msa1441350:CDS |
| TTATCCCTCACATAGTAAAA+CGG | 0.557126 | tig0029300:-14135 | None:intergenic |
| TTTCTCGATGCATCAGGCTG+CGG | 0.572249 | tig0029300:-14258 | None:intergenic |
| GGTTACTATGAACCCTTCAA+GGG | 0.573399 | tig0029300:+14006 | Msa1441350:CDS |
| ACTATGAACCCTTCAAGGGC+GGG | 0.575356 | tig0029300:+14010 | Msa1441350:CDS |
| TACTATGAACCCTTCAAGGG+CGG | 0.584210 | tig0029300:+14009 | Msa1441350:CDS |
| CAAGAAGCCCAGGAAGCTGA+AGG | 0.592415 | tig0029300:+14340 | Msa1441350:CDS |
| ATGATCGTGAAAGTGCAAAT+GGG | 0.611860 | tig0029300:+14064 | Msa1441350:CDS |
| TCTCGTGGCTGAAAGGGCAA+GGG | 0.616671 | tig0029300:-14087 | None:intergenic |
| TATTGGTTCAATGATAACGC+TGG | 0.617531 | tig0029300:+15771 | Msa1441350:three_prime_UTR |
| TCGAAGAAAAGGAAGTCTAA+GGG | 0.624050 | tig0029300:+14296 | Msa1441350:CDS |
| AGGCTGCGGTATAACCGGCA+AGG | 0.642668 | tig0029300:-14244 | None:intergenic |
| TCCGAAACAGCACAATCTCG+TGG | 0.644189 | tig0029300:-14102 | None:intergenic |
| TACTCAAACACAAATTCTGG+AGG | 0.645744 | tig0029300:+14846 | Msa1441350:three_prime_UTR |
| CCATCAATTACTAAATGACG+CGG | 0.649018 | tig0029300:+14796 | Msa1441350:three_prime_UTR |
| GATCATTCATGGCAGGCATG+AGG | 0.655695 | tig0029300:-14047 | None:intergenic |
| ACGCGGACTATACAAACAAG+AGG | 0.655818 | tig0029300:+14813 | Msa1441350:three_prime_UTR |
| ATTGATAAACCTATGTCTCG+GGG | 0.666123 | tig0029300:-14166 | None:intergenic |
| TGTTACCATGGAAGGTTACG+GGG | 0.672316 | tig0029300:-12748 | None:intergenic |
| TGGCATTTGTAGTATCTAAG+GGG | 0.692689 | tig0029300:-15932 | None:intergenic |
| GTGCTGAATATGCCCAATTG+GGG | 0.693408 | tig0029300:+13985 | Msa1441350:CDS |
| GTGTTCTCTTCCCGGCAAAG+CGG | 0.696385 | tig0029300:+12668 | Msa1441350:five_prime_UTR |
| TGATGCATCGAGAAATGTGA+AGG | 0.705409 | tig0029300:+14266 | Msa1441350:CDS |
| TGCATCGAGAAATGTGAAGG+TGG | 0.719913 | tig0029300:+14269 | Msa1441350:CDS |
| AGATTGAATTGTGAACAACA+TGG | 0.838604 | tig0029300:+13187 | Msa1441350:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGAAAAAAAAATAGTATTT+GGG | - | tig0029300:12793-12812 | None:intergenic | 10.0% |
| !! | AATGAAAAAAAAATAGTATT+TGG | - | tig0029300:12794-12813 | None:intergenic | 10.0% |
| !! | TTCTATTATGTATATTTATT+TGG | + | tig0029300:13822-13841 | Msa1441350:intron | 10.0% |
| !!! | TTTGTTAAATGAAATTTTAT+AGG | + | tig0029300:13923-13942 | Msa1441350:intron | 10.0% |
| !!! | TTTTATTATAAAGATTTTTG+TGG | + | tig0029300:14940-14959 | Msa1441350:intron | 10.0% |
| !!! | TTAGTTTCTTTAATTTCAAT+TGG | + | tig0029300:12854-12873 | Msa1441350:intron | 15.0% |
| !!! | TAGTTTCTTTAATTTCAATT+GGG | + | tig0029300:12855-12874 | Msa1441350:intron | 15.0% |
| !!! | GATAGTATATTTTTATTTTC+CGG | + | tig0029300:13608-13627 | Msa1441350:intron | 15.0% |
| !!! | GCTTAATTTTACAATTTAAA+TGG | - | tig0029300:14477-14496 | None:intergenic | 15.0% |
| !! | TTAAATTGTAAAATTAAGCA+TGG | + | tig0029300:14478-14497 | Msa1441350:intron | 15.0% |
| !!! | AAAGTTTGTTAAATGAATAT+TGG | + | tig0029300:14558-14577 | Msa1441350:intron | 15.0% |
| !!! | AAGTTTGTTAAATGAATATT+GGG | + | tig0029300:14559-14578 | Msa1441350:intron | 15.0% |
| !! | TTATCAACAAATTAAAGAAT+TGG | + | tig0029300:14615-14634 | Msa1441350:intron | 15.0% |
| !!! | AGCTAGAAATTTTTATTTTA+TGG | + | tig0029300:14886-14905 | Msa1441350:intron | 15.0% |
| !! | AAATCATCTAAAAATATAGT+TGG | - | tig0029300:15163-15182 | None:intergenic | 15.0% |
| !! | TCTTTATTAAGCAAAATTTA+TGG | - | tig0029300:15694-15713 | None:intergenic | 15.0% |
| !! | AAAAAAACATAACTTCAGAT+TGG | - | tig0029300:12961-12980 | None:intergenic | 20.0% |
| !!! | AATCTGAAGTTATGTTTTTT+TGG | + | tig0029300:12960-12979 | Msa1441350:intron | 20.0% |
| !! | AAGTTACTATTTGACAATAA+AGG | - | tig0029300:13039-13058 | None:intergenic | 20.0% |
| !! | ATATGAAAATGAATTTGCAT+TGG | + | tig0029300:13573-13592 | Msa1441350:intron | 20.0% |
| !!! | TTCATCACTTTAATTTCTTT+GGG | + | tig0029300:13725-13744 | Msa1441350:intron | 20.0% |
| !!! | ACAAAAAAATGCATTTTCAT+TGG | - | tig0029300:15023-15042 | None:intergenic | 20.0% |
| !!! | TTTTGTCACAATTTAGATTT+AGG | + | tig0029300:15037-15056 | Msa1441350:intron | 20.0% |
| !! | ATAAGTTTGATAGATTTCAT+GGG | + | tig0029300:15060-15079 | Msa1441350:intron | 20.0% |
| !!! | TTTCTTCTTTATTGATTGTA+AGG | + | tig0029300:15287-15306 | Msa1441350:intron | 20.0% |
| !!! | TTCTTCTTTATTGATTGTAA+GGG | + | tig0029300:15288-15307 | Msa1441350:intron | 20.0% |
| !! | TTGTCAATCTACTAATAATT+TGG | + | tig0029300:15589-15608 | Msa1441350:intron | 20.0% |
| !!! | AAATACAGAGTATTATGAAT+TGG | + | tig0029300:15805-15824 | Msa1441350:three_prime_UTR | 20.0% |
| ! | GAATACACAAAAACAAATCA+AGG | - | tig0029300:12939-12958 | None:intergenic | 25.0% |
| ! | AGTAACATTGACACAAAATA+GGG | - | tig0029300:13108-13127 | None:intergenic | 25.0% |
| ! | AAGTAACATTGACACAAAAT+AGG | - | tig0029300:13109-13128 | None:intergenic | 25.0% |
| !!! | GAGTTGATTTTATGTTCATT+TGG | + | tig0029300:13250-13269 | Msa1441350:intron | 25.0% |
| !! | CTTCATCACTTTAATTTCTT+TGG | + | tig0029300:13724-13743 | Msa1441350:intron | 25.0% |
| ! | AATTTCCTGACATTGAATTA+CGG | + | tig0029300:13882-13901 | Msa1441350:intron | 25.0% |
| ! | ATATTGATAAACCTATGTCT+CGG | - | tig0029300:14171-14190 | None:intergenic | 25.0% |
| ! | ATTGTAAAATTAAGCATGGA+TGG | + | tig0029300:14482-14501 | Msa1441350:intron | 25.0% |
| ! | ACACAAAGATTGAAAGAATA+AGG | - | tig0029300:14676-14695 | None:intergenic | 25.0% |
| ! | TTATTCTTTCAATCTTTGTG+TGG | + | tig0029300:14675-14694 | Msa1441350:intron | 25.0% |
| !! | TTTAGTAATTGATGGCATAT+GGG | - | tig0029300:14791-14810 | None:intergenic | 25.0% |
| !! | ATTTAGTAATTGATGGCATA+TGG | - | tig0029300:14792-14811 | None:intergenic | 25.0% |
| ! | GATAAGTTTGATAGATTTCA+TGG | + | tig0029300:15059-15078 | Msa1441350:intron | 25.0% |
| ! | AAGTTTGATTGTTGAAACAT+TGG | + | tig0029300:15229-15248 | Msa1441350:intron | 25.0% |
| ! | AGTTAATTGTACAACATAAG+TGG | + | tig0029300:15327-15346 | Msa1441350:intron | 25.0% |
| ! | AGTTGTGTTGTAAAACTTAA+TGG | + | tig0029300:15379-15398 | Msa1441350:intron | 25.0% |
| ! | TTATCAAAGGACAATTCATT+TGG | - | tig0029300:15435-15454 | None:intergenic | 25.0% |
| ! | TCATGTACAGATATTATCAA+AGG | - | tig0029300:15448-15467 | None:intergenic | 25.0% |
| !! | TTGATAATATCTGTACATGA+TGG | + | tig0029300:15448-15467 | Msa1441350:intron | 25.0% |
| ! | AGATTATACAAAGTCTTTAG+CGG | - | tig0029300:15495-15514 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGCTTTATGTGC+AGG | + | tig0029300:15746-15765 | Msa1441350:intron | 25.0% |
| ! | AAAAATGTAGGATCTAAAAG+TGG | - | tig0029300:15955-15974 | None:intergenic | 25.0% |
| ! | TCGATTTTTATTCTCAGCAT+AGG | + | tig0029300:12831-12850 | Msa1441350:intron | 30.0% |
| ! | TCGAAAATTGTGTTTTCAAC+AGG | + | tig0029300:13133-13152 | Msa1441350:intron | 30.0% |
| AGATTGAATTGTGAACAACA+TGG | + | tig0029300:13187-13206 | Msa1441350:five_prime_UTR | 30.0% | |
| !! | CAAATGAGCATTGAATCAAA+CGG | - | tig0029300:13291-13310 | None:intergenic | 30.0% |
| CAACAATCTAACCATACATA+GGG | - | tig0029300:13649-13668 | None:intergenic | 30.0% | |
| TCAACAATCTAACCATACAT+AGG | - | tig0029300:13650-13669 | None:intergenic | 30.0% | |
| ATGTATGGTTAGATTGTTGA+AGG | + | tig0029300:13650-13669 | Msa1441350:intron | 30.0% | |
| ! | TTTTTCCGTAATTCAATGTC+AGG | - | tig0029300:13890-13909 | None:intergenic | 30.0% |
| CAACTACAAAACAACAACAA+AGG | - | tig0029300:13951-13970 | None:intergenic | 30.0% | |
| !!! | TTGTTGTTTTGTAGTTGTCA+TGG | + | tig0029300:13954-13973 | Msa1441350:intron | 30.0% |
| TTATCCCTCACATAGTAAAA+CGG | - | tig0029300:14138-14157 | None:intergenic | 30.0% | |
| TATTGATAAACCTATGTCTC+GGG | - | tig0029300:14170-14189 | None:intergenic | 30.0% | |
| TCTGGAAGAACATCATAATT+TGG | - | tig0029300:14207-14226 | None:intergenic | 30.0% | |
| TTCACTGTGTATAATGATTC+TGG | + | tig0029300:14382-14401 | Msa1441350:three_prime_UTR | 30.0% | |
| !! | TTTCATTTAACACCGATTCA+TGG | + | tig0029300:14421-14440 | Msa1441350:three_prime_UTR | 30.0% |
| AAGATTGAAAGAATAAGGAG+AGG | - | tig0029300:14671-14690 | None:intergenic | 30.0% | |
| TCTTTGTGTGGAATAGATTA+TGG | + | tig0029300:14687-14706 | Msa1441350:intron | 30.0% | |
| ATTCAATTACTTACTCTTGC+AGG | + | tig0029300:14711-14730 | Msa1441350:intron | 30.0% | |
| ACATACTCAAACACAAATTC+TGG | + | tig0029300:14843-14862 | Msa1441350:three_prime_UTR | 30.0% | |
| !! | GCTTTTAGCTACTTTCTAAT+TGG | - | tig0029300:14989-15008 | None:intergenic | 30.0% |
| TTGATAGATTTCATGGGAAT+TGG | + | tig0029300:15066-15085 | Msa1441350:intron | 30.0% | |
| GATATTCCCTTAAAAATAGC+AGG | + | tig0029300:15183-15202 | Msa1441350:intron | 30.0% | |
| !!! | ATGAAGCCTGCTATTTTTAA+GGG | - | tig0029300:15192-15211 | None:intergenic | 30.0% |
| !!! | TATGAAGCCTGCTATTTTTA+AGG | - | tig0029300:15193-15212 | None:intergenic | 30.0% |
| ACAATCAAACTTATGCCATA+AGG | - | tig0029300:15221-15240 | None:intergenic | 30.0% | |
| ! | TTGAAACATTGGAACTGTTT+TGG | + | tig0029300:15240-15259 | Msa1441350:intron | 30.0% |
| ATTGTACAACATAAGTGGAA+AGG | + | tig0029300:15332-15351 | Msa1441350:intron | 30.0% | |
| ACATGTGAATTTGAGTAGTT+AGG | + | tig0029300:15562-15581 | Msa1441350:intron | 30.0% | |
| GCAATGTACTCAAGAAATAT+TGG | + | tig0029300:15635-15654 | Msa1441350:intron | 30.0% | |
| ATGTACTCAAGAAATATTGG+AGG | + | tig0029300:15638-15657 | Msa1441350:intron | 30.0% | |
| TGAATTGGTTATCATAGAGT+TGG | + | tig0029300:15820-15839 | Msa1441350:three_prime_UTR | 30.0% | |
| TGGCTTGATAAGAAAAATGT+AGG | - | tig0029300:15967-15986 | None:intergenic | 30.0% | |
| TGTGAAGTGGAGTAGAATAT+TGG | - | tig0029300:12716-12735 | None:intergenic | 35.0% | |
| AGTATTTGGGAGAGAAAGAA+GGG | - | tig0029300:12780-12799 | None:intergenic | 35.0% | |
| TAGTATTTGGGAGAGAAAGA+AGG | - | tig0029300:12781-12800 | None:intergenic | 35.0% | |
| TTTCACTTAGATTCGATCTG+TGG | + | tig0029300:12985-13004 | Msa1441350:intron | 35.0% | |
| !! | TTTGTGTGTTCTAAGGTAGA+TGG | + | tig0029300:13160-13179 | Msa1441350:five_prime_UTR | 35.0% |
| !!! | GGTGAGTTTTGTTTAATCGT+TGG | + | tig0029300:13208-13227 | Msa1441350:intron | 35.0% |
| TTAAAGTGAACATACGTGCT+GGG | + | tig0029300:13320-13339 | Msa1441350:intron | 35.0% | |
| !!! | AGTTTTGGAGAGAAACATCA+TGG | - | tig0029300:13425-13444 | None:intergenic | 35.0% |
| ! | TGATCAGTTCACAGAAGTTT+TGG | - | tig0029300:13440-13459 | None:intergenic | 35.0% |
| ! | AATGATCGTGAAAGTGCAAA+TGG | + | tig0029300:14063-14082 | Msa1441350:CDS | 35.0% |
| ! | ATGATCGTGAAAGTGCAAAT+GGG | + | tig0029300:14064-14083 | Msa1441350:CDS | 35.0% |
| ! | TACTCCGTTTTACTATGTGA+GGG | + | tig0029300:14131-14150 | Msa1441350:CDS | 35.0% |
| TTTACTATGTGAGGGATAAC+TGG | + | tig0029300:14139-14158 | Msa1441350:CDS | 35.0% | |
| ATTGATAAACCTATGTCTCG+GGG | - | tig0029300:14169-14188 | None:intergenic | 35.0% | |
| TCGAAGAAAAGGAAGTCTAA+GGG | + | tig0029300:14296-14315 | Msa1441350:CDS | 35.0% | |
| !! | ATTTAACACCGATTCATGGA+TGG | + | tig0029300:14425-14444 | Msa1441350:three_prime_UTR | 35.0% |
| !! | TTTAACACCGATTCATGGAT+GGG | + | tig0029300:14426-14445 | Msa1441350:three_prime_UTR | 35.0% |
| GTAAAACGTTGCAATTCATG+AGG | + | tig0029300:14511-14530 | Msa1441350:intron | 35.0% | |
| CCATCAATTACTAAATGACG+CGG | + | tig0029300:14796-14815 | Msa1441350:three_prime_UTR | 35.0% | |
| TACTCAAACACAAATTCTGG+AGG | + | tig0029300:14846-14865 | Msa1441350:three_prime_UTR | 35.0% | |
| AGGCTTCATATTGTTCCTTA+TGG | + | tig0029300:15203-15222 | Msa1441350:intron | 35.0% | |
| !!! | AACATTGGAACTGTTTTGGT+TGG | + | tig0029300:15244-15263 | Msa1441350:intron | 35.0% |
| ! | TTTGGTTGGTTGTATGTTGA+TGG | + | tig0029300:15258-15277 | Msa1441350:intron | 35.0% |
| TTGATTGTAAGGGATGTTGA+TGG | + | tig0029300:15298-15317 | Msa1441350:intron | 35.0% | |
| ATTTCTTGAGTACATTGCAG+AGG | - | tig0029300:15633-15652 | None:intergenic | 35.0% | |
| TGCTTTATGTGCAGGTATAT+TGG | + | tig0029300:15754-15773 | Msa1441350:intron | 35.0% | |
| !! | TATTGGTTCAATGATAACGC+TGG | + | tig0029300:15771-15790 | Msa1441350:three_prime_UTR | 35.0% |
| ATCATAGAGTTGGAGTCTAA+TGG | + | tig0029300:15830-15849 | Msa1441350:three_prime_UTR | 35.0% | |
| TCATAGAGTTGGAGTCTAAT+GGG | + | tig0029300:15831-15850 | Msa1441350:three_prime_UTR | 35.0% | |
| TGGCATTTGTAGTATCTAAG+GGG | - | tig0029300:15935-15954 | None:intergenic | 35.0% | |
| GTGGCATTTGTAGTATCTAA+GGG | - | tig0029300:15936-15955 | None:intergenic | 35.0% | |
| AGTGGCATTTGTAGTATCTA+AGG | - | tig0029300:15937-15956 | None:intergenic | 35.0% | |
| ATGTTACCATGGAAGGTTAC+GGG | - | tig0029300:12752-12771 | None:intergenic | 40.0% | |
| GATGTTACCATGGAAGGTTA+CGG | - | tig0029300:12753-12772 | None:intergenic | 40.0% | |
| ! | AGGTGCTTTTGTGTGTTCTA+AGG | + | tig0029300:13153-13172 | Msa1441350:intron | 40.0% |
| CTTAAAGTGAACATACGTGC+TGG | + | tig0029300:13319-13338 | Msa1441350:intron | 40.0% | |
| AGTTGCGACTCACTAAGAAA+AGG | + | tig0029300:13389-13408 | Msa1441350:intron | 40.0% | |
| ! | TCATTTTCATATGCTGCTGC+TGG | - | tig0029300:13565-13584 | None:intergenic | 40.0% |
| AGAGCTTAATGCCCTATGTA+TGG | + | tig0029300:13635-13654 | Msa1441350:intron | 40.0% | |
| CACAATGACGACGACTATAT+TGG | + | tig0029300:13788-13807 | Msa1441350:intron | 40.0% | |
| ATGTGCTGAATATGCCCAAT+TGG | + | tig0029300:13983-14002 | Msa1441350:CDS | 40.0% | |
| TGTGCTGAATATGCCCAATT+GGG | + | tig0029300:13984-14003 | Msa1441350:CDS | 40.0% | |
| GGTTCATAGTAACCCCAATT+GGG | - | tig0029300:14000-14019 | None:intergenic | 40.0% | |
| GGTTACTATGAACCCTTCAA+GGG | + | tig0029300:14006-14025 | Msa1441350:CDS | 40.0% | |
| TGCACTTTCACGATCATTCA+TGG | - | tig0029300:14061-14080 | None:intergenic | 40.0% | |
| ! | CTACTCCGTTTTACTATGTG+AGG | + | tig0029300:14130-14149 | Msa1441350:CDS | 40.0% |
| TTCACATTTCTCGATGCATC+AGG | - | tig0029300:14267-14286 | None:intergenic | 40.0% | |
| TGATGCATCGAGAAATGTGA+AGG | + | tig0029300:14266-14285 | Msa1441350:CDS | 40.0% | |
| GTCGAAGAAAAGGAAGTCTA+AGG | + | tig0029300:14295-14314 | Msa1441350:CDS | 40.0% | |
| ATATCATCCTTCAGCTTCCT+GGG | - | tig0029300:14350-14369 | None:intergenic | 40.0% | |
| AATATCATCCTTCAGCTTCC+TGG | - | tig0029300:14351-14370 | None:intergenic | 40.0% | |
| GAGATTACCCATCCATGAAT+CGG | - | tig0029300:14436-14455 | None:intergenic | 40.0% | |
| CCGCGTCATTTAGTAATTGA+TGG | - | tig0029300:14799-14818 | None:intergenic | 40.0% | |
| !! | TTGGTTGTATGTTGATGGCT+AGG | + | tig0029300:15263-15282 | Msa1441350:intron | 40.0% |
| GAAAGGAATTTCGAGAACCT+AGG | + | tig0029300:15349-15368 | Msa1441350:intron | 40.0% | |
| CAACACAACTCAAATCTCCT+AGG | - | tig0029300:15369-15388 | None:intergenic | 40.0% | |
| CACACTTTGCTTCAAATTGG+TGG | - | tig0029300:15912-15931 | None:intergenic | 40.0% | |
| GAAGAGAACGCTTTGTGAAG+TGG | - | tig0029300:12729-12748 | None:intergenic | 45.0% | |
| TGTTACCATGGAAGGTTACG+GGG | - | tig0029300:12751-12770 | None:intergenic | 45.0% | |
| GGTTACGATGTTACCATGGA+AGG | - | tig0029300:12759-12778 | None:intergenic | 45.0% | |
| GAAGGGTTACGATGTTACCA+TGG | - | tig0029300:12763-12782 | None:intergenic | 45.0% | |
| ACGAAAGCAGCAGATCACTA+TGG | + | tig0029300:13354-13373 | Msa1441350:intron | 45.0% | |
| CGAAAGCAGCAGATCACTAT+GGG | + | tig0029300:13355-13374 | Msa1441350:intron | 45.0% | |
| TGCGACTCACTAAGAAAAGG+TGG | + | tig0029300:13392-13411 | Msa1441350:intron | 45.0% | |
| GCGACTCACTAAGAAAAGGT+GGG | + | tig0029300:13393-13412 | Msa1441350:intron | 45.0% | |
| ! | AGGGCATTAAGCTCTCTTAC+CGG | - | tig0029300:13630-13649 | None:intergenic | 45.0% |
| GTGCTGAATATGCCCAATTG+GGG | + | tig0029300:13985-14004 | Msa1441350:CDS | 45.0% | |
| GGGTTCATAGTAACCCCAAT+TGG | - | tig0029300:14001-14020 | None:intergenic | 45.0% | |
| GGGTTACTATGAACCCTTCA+AGG | + | tig0029300:14005-14024 | Msa1441350:CDS | 45.0% | |
| TACTATGAACCCTTCAAGGG+CGG | + | tig0029300:14009-14028 | Msa1441350:CDS | 45.0% | |
| CTTTCACGATCATTCATGGC+AGG | - | tig0029300:14057-14076 | None:intergenic | 45.0% | |
| TGCATCGAGAAATGTGAAGG+TGG | + | tig0029300:14269-14288 | Msa1441350:CDS | 45.0% | |
| AAGGTGGCAAGTCGAAGAAA+AGG | + | tig0029300:14285-14304 | Msa1441350:CDS | 45.0% | |
| ! | ACGCGGACTATACAAACAAG+AGG | + | tig0029300:14813-14832 | Msa1441350:three_prime_UTR | 45.0% |
| GAATTGGCTATGTGAGCTTG+AGG | + | tig0029300:15082-15101 | Msa1441350:intron | 45.0% | |
| ! | TTGGAGGTGATTTGCCTTCT+AGG | + | tig0029300:15654-15673 | Msa1441350:intron | 45.0% |
| ! | TGGAGGTGATTTGCCTTCTA+GGG | + | tig0029300:15655-15674 | Msa1441350:intron | 45.0% |
| GGGCACACTTTGCTTCAAAT+TGG | - | tig0029300:15915-15934 | None:intergenic | 45.0% | |
| GCCGGGAAGAGAACACATAT+TGG | - | tig0029300:12664-12683 | None:intergenic | 50.0% | |
| TTGTGAAGAGACCGCTTTGC+CGG | - | tig0029300:12682-12701 | None:intergenic | 50.0% | |
| ACTATGAACCCTTCAAGGGC+GGG | + | tig0029300:14010-14029 | Msa1441350:CDS | 50.0% | |
| GATCATTCATGGCAGGCATG+AGG | - | tig0029300:14050-14069 | None:intergenic | 50.0% | |
| GCACAATCTCGTGGCTGAAA+GGG | - | tig0029300:14096-14115 | None:intergenic | 50.0% | |
| AGCACAATCTCGTGGCTGAA+AGG | - | tig0029300:14097-14116 | None:intergenic | 50.0% | |
| !! | GCCACGAGATTGTGCTGTTT+CGG | + | tig0029300:14101-14120 | Msa1441350:CDS | 50.0% |
| TCCGAAACAGCACAATCTCG+TGG | - | tig0029300:14105-14124 | None:intergenic | 50.0% | |
| !! | GAGAGTGCTTGTGATGCTTC+TGG | - | tig0029300:14225-14244 | None:intergenic | 50.0% |
| ATCACAAGCACTCTCCTTGC+CGG | + | tig0029300:14230-14249 | Msa1441350:CDS | 50.0% | |
| TTTCTCGATGCATCAGGCTG+CGG | - | tig0029300:14261-14280 | None:intergenic | 50.0% | |
| !! | TTCCTGGGCTTCTTGGCTTT+TGG | - | tig0029300:14335-14354 | None:intergenic | 50.0% |
| GGTTGTGACATTGCTCACTG+AGG | + | tig0029300:14961-14980 | Msa1441350:intron | 50.0% | |
| TGAGCTTGAGGACAGCAAGA+GGG | + | tig0029300:15094-15113 | Msa1441350:intron | 50.0% | |
| !! | GTGATTTGCCTTCTAGGGCT+GGG | + | tig0029300:15660-15679 | Msa1441350:intron | 50.0% |
| !! | TGATTTGCCTTCTAGGGCTG+GGG | + | tig0029300:15661-15680 | Msa1441350:intron | 50.0% |
| GTGTTCTCTTCCCGGCAAAG+CGG | + | tig0029300:12668-12687 | Msa1441350:five_prime_UTR | 55.0% | |
| TGTGAAGAGACCGCTTTGCC+GGG | - | tig0029300:12681-12700 | None:intergenic | 55.0% | |
| CTCTTCCCCGTAACCTTCCA+TGG | + | tig0029300:12743-12762 | Msa1441350:five_prime_UTR | 55.0% | |
| ! | TGCTGCTGCTGGCAGTTTTC+TGG | - | tig0029300:13554-13573 | None:intergenic | 55.0% |
| TCTCGTGGCTGAAAGGGCAA+GGG | - | tig0029300:14090-14109 | None:intergenic | 55.0% | |
| ATCTCGTGGCTGAAAGGGCA+AGG | - | tig0029300:14091-14110 | None:intergenic | 55.0% | |
| ACTGGATGACCCCGAGACAT+AGG | + | tig0029300:14157-14176 | Msa1441350:CDS | 55.0% | |
| GCATCAGGCTGCGGTATAAC+CGG | - | tig0029300:14252-14271 | None:intergenic | 55.0% | |
| !! | GGGCTTCTTGGCTTTTGGAG+TGG | - | tig0029300:14330-14349 | None:intergenic | 55.0% |
| CTCCAAAAGCCAAGAAGCCC+AGG | + | tig0029300:14330-14349 | Msa1441350:CDS | 55.0% | |
| CTTCAGCTTCCTGGGCTTCT+TGG | - | tig0029300:14342-14361 | None:intergenic | 55.0% | |
| CAAGAAGCCCAGGAAGCTGA+AGG | + | tig0029300:14340-14359 | Msa1441350:CDS | 55.0% | |
| GTGAGCTTGAGGACAGCAAG+AGG | + | tig0029300:15093-15112 | Msa1441350:intron | 55.0% | |
| !! | GGTGATTTGCCTTCTAGGGC+TGG | + | tig0029300:15659-15678 | Msa1441350:intron | 55.0% |
| CCGAGATTCCCGCCCTTGAA+GGG | - | tig0029300:14021-14040 | None:intergenic | 60.0% | |
| CCCTTCAAGGGCGGGAATCT+CGG | + | tig0029300:14018-14037 | Msa1441350:CDS | 60.0% | |
| ACCGAGATTCCCGCCCTTGA+AGG | - | tig0029300:14022-14041 | None:intergenic | 60.0% | |
| AGGCTGCGGTATAACCGGCA+AGG | - | tig0029300:14247-14266 | None:intergenic | 60.0% | |
| ACCTTTGCCCCAGCCCTAGA+AGG | - | tig0029300:15671-15690 | None:intergenic | 60.0% | |
| !! | GCCTTCTAGGGCTGGGGCAA+AGG | + | tig0029300:15667-15686 | Msa1441350:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0029300 | gene | 12661 | 15987 | 12661 | ID=Msa1441350;Name=Msa1441350 |
| tig0029300 | mRNA | 12661 | 15987 | 12661 | ID=Msa1441350-mRNA-1;Parent=Msa1441350;Name=Msa1441350-mRNA-1;_AED=0.11;_eAED=0.11;_QI=163|0.75|1|1|0|0|5|443|128 |
| tig0029300 | exon | 12661 | 12764 | 12661 | ID=Msa1441350-mRNA-1:exon:12754;Parent=Msa1441350-mRNA-1 |
| tig0029300 | exon | 13155 | 13208 | 13155 | ID=Msa1441350-mRNA-1:exon:12755;Parent=Msa1441350-mRNA-1 |
| tig0029300 | exon | 13968 | 14447 | 13968 | ID=Msa1441350-mRNA-1:exon:12756;Parent=Msa1441350-mRNA-1 |
| tig0029300 | exon | 14733 | 14867 | 14733 | ID=Msa1441350-mRNA-1:exon:12757;Parent=Msa1441350-mRNA-1 |
| tig0029300 | exon | 15768 | 15987 | 15768 | ID=Msa1441350-mRNA-1:exon:12758;Parent=Msa1441350-mRNA-1 |
| tig0029300 | five_prime_UTR | 12661 | 12764 | 12661 | ID=Msa1441350-mRNA-1:five_prime_utr;Parent=Msa1441350-mRNA-1 |
| tig0029300 | five_prime_UTR | 13155 | 13208 | 13155 | ID=Msa1441350-mRNA-1:five_prime_utr;Parent=Msa1441350-mRNA-1 |
| tig0029300 | five_prime_UTR | 13968 | 13972 | 13968 | ID=Msa1441350-mRNA-1:five_prime_utr;Parent=Msa1441350-mRNA-1 |
| tig0029300 | CDS | 13973 | 14359 | 13973 | ID=Msa1441350-mRNA-1:cds;Parent=Msa1441350-mRNA-1 |
| tig0029300 | three_prime_UTR | 14360 | 14447 | 14360 | ID=Msa1441350-mRNA-1:three_prime_utr;Parent=Msa1441350-mRNA-1 |
| tig0029300 | three_prime_UTR | 14733 | 14867 | 14733 | ID=Msa1441350-mRNA-1:three_prime_utr;Parent=Msa1441350-mRNA-1 |
| tig0029300 | three_prime_UTR | 15768 | 15987 | 15768 | ID=Msa1441350-mRNA-1:three_prime_utr;Parent=Msa1441350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
