Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153980 | XP_039685292.1 | 78.295 | 129 | 14 | 1 | 1 | 115 | 1 | 129 | 7.84e-63 | 203 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153980 | I3TAB3 | 78.295 | 129 | 14 | 1 | 1 | 115 | 1 | 129 | 3.74e-63 | 203 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1153980 | TF | BBR-BPC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0606960 | Msa1153980 | 0.815800 | 7.678706e-52 | -8.615850e-47 |
| Msa1009560 | Msa1153980 | 0.807369 | 5.227867e-50 | -8.615850e-47 |
| Msa1153980 | Msa1306260 | 0.809331 | 1.995084e-50 | -8.615850e-47 |
| Msa1153980 | Msa1405570 | 0.810304 | 1.232084e-50 | -8.615850e-47 |
| Msa1153980 | Msa1441350 | 0.979917 | 4.952549e-149 | -8.615850e-47 |
| Msa0520410 | Msa1153980 | 0.814242 | 1.702623e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1153980 | MtrunA17_Chr8g0375531 | 78.295 | 129 | 14 | 1 | 1 | 115 | 1 | 129 | 7.21e-67 | 203 |
| Msa1153980 | MtrunA17_Chr2g0296951 | 92.500 | 40 | 3 | 0 | 64 | 103 | 1 | 40 | 8.85e-21 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 84 sgRNAs with CRISPR-Local
Find 197 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAGCTTCCTGGGCTTCT+TGG | 0.137623 | 7_4:-41245798 | None:intergenic |
| TCTGGAAGAACATCATAATT+TGG | 0.181172 | 7_4:-41245663 | None:intergenic |
| TGCTTTATGTGCAGGTATAT+TGG | 0.260394 | 7_4:+41247213 | Msa1153980:intron |
| TTCCTGGGCTTCTTGGCTTT+TGG | 0.263930 | 7_4:-41245791 | None:intergenic |
| TCCAATATGTGTTCTCTTCC+CGG | 0.270539 | 7_4:+41244118 | None:intergenic |
| TTCACTGTGTATAATGATTC+TGG | 0.279049 | 7_4:+41245841 | Msa1153980:three_prime_UTR |
| AATATCATCCTTCAGCTTCC+TGG | 0.309433 | 7_4:-41245807 | None:intergenic |
| GCCACGAGATTGTGCTGTTT+CGG | 0.312141 | 7_4:+41245560 | Msa1153980:CDS |
| TTTACTATGTGAGGGATAAC+TGG | 0.316412 | 7_4:+41245598 | Msa1153980:CDS |
| GGGCACACTTTGCTTCAAAT+TGG | 0.322688 | 7_4:-41247371 | None:intergenic |
| ATTTAGTAATTGATGGCATA+TGG | 0.328250 | 7_4:-41246248 | None:intergenic |
| AGTGGCATTTGTAGTATCTA+AGG | 0.333736 | 7_4:-41247393 | None:intergenic |
| GAGAGTGCTTGTGATGCTTC+TGG | 0.341012 | 7_4:-41245681 | None:intergenic |
| TGTGAAGTGGAGTAGAATAT+TGG | 0.341376 | 7_4:-41244171 | None:intergenic |
| TTTCATTTAACACCGATTCA+TGG | 0.342823 | 7_4:+41245880 | Msa1153980:three_prime_UTR |
| CCGCGTCATTTAGTAATTGA+TGG | 0.345675 | 7_4:-41246255 | None:intergenic |
| TGCACTTTCACGATCATTCA+TGG | 0.350319 | 7_4:-41245517 | None:intergenic |
| GTCGAAGAAAAGGAAGTCTA+AGG | 0.355045 | 7_4:+41245754 | Msa1153980:CDS |
| TTGTGAAGAGACCGCTTTGC+CGG | 0.364302 | 7_4:-41244137 | None:intergenic |
| ATCATAGAGTTGGAGTCTAA+TGG | 0.367763 | 7_4:+41247289 | Msa1153980:three_prime_UTR |
| ACATACTCAAACACAAATTC+TGG | 0.377907 | 7_4:+41246302 | Msa1153980:three_prime_UTR |
| ATCACAAGCACTCTCCTTGC+CGG | 0.385439 | 7_4:+41245689 | Msa1153980:CDS |
| CCCTTCAAGGGCGGGAATCT+CGG | 0.387204 | 7_4:+41245477 | Msa1153980:CDS |
| GCATCAGGCTGCGGTATAAC+CGG | 0.404926 | 7_4:-41245708 | None:intergenic |
| AAATACAGAGTATTATGAAT+TGG | 0.412732 | 7_4:+41247264 | Msa1153980:three_prime_UTR |
| GGGTTACTATGAACCCTTCA+AGG | 0.417533 | 7_4:+41245464 | Msa1153980:CDS |
| TTCACATTTCTCGATGCATC+AGG | 0.424410 | 7_4:-41245723 | None:intergenic |
| CACACTTTGCTTCAAATTGG+TGG | 0.434130 | 7_4:-41247368 | None:intergenic |
| TCATAGAGTTGGAGTCTAAT+GGG | 0.438635 | 7_4:+41247290 | Msa1153980:three_prime_UTR |
| TGAATTGGTTATCATAGAGT+TGG | 0.448370 | 7_4:+41247279 | Msa1153980:three_prime_UTR |
| CTCTTCCCCGTAACCTTCCA+TGG | 0.452063 | 7_4:+41244201 | Msa1153980:five_prime_UTR |
| TATTGATAAACCTATGTCTC+GGG | 0.452192 | 7_4:-41245626 | None:intergenic |
| GCCGGGAAGAGAACACATAT+TGG | 0.454781 | 7_4:-41244119 | None:intergenic |
| ATGTTACCATGGAAGGTTAC+GGG | 0.456263 | 7_4:-41244207 | None:intergenic |
| ACCGAGATTCCCGCCCTTGA+AGG | 0.457782 | 7_4:-41245478 | None:intergenic |
| GGGTTCATAGTAACCCCAAT+TGG | 0.466238 | 7_4:-41245457 | None:intergenic |
| ATGTGCTGAATATGCCCAAT+TGG | 0.468228 | 7_4:+41245442 | Msa1153980:CDS |
| ATATCATCCTTCAGCTTCCT+GGG | 0.468814 | 7_4:-41245806 | None:intergenic |
| CTCCAAAAGCCAAGAAGCCC+AGG | 0.474778 | 7_4:+41245789 | Msa1153980:CDS |
| GAGATTACCCATCCATGAAT+CGG | 0.478602 | 7_4:-41245892 | None:intergenic |
| TTTAGTAATTGATGGCATAT+GGG | 0.491083 | 7_4:-41246247 | None:intergenic |
| AATGATCGTGAAAGTGCAAA+TGG | 0.492328 | 7_4:+41245522 | Msa1153980:CDS |
| ATCTCGTGGCTGAAAGGGCA+AGG | 0.493413 | 7_4:-41245547 | None:intergenic |
| AGCACAATCTCGTGGCTGAA+AGG | 0.494131 | 7_4:-41245553 | None:intergenic |
| TTTGTGTGTTCTAAGGTAGA+TGG | 0.495757 | 7_4:+41244619 | Msa1153980:five_prime_UTR |
| GGTTCATAGTAACCCCAATT+GGG | 0.512276 | 7_4:-41245456 | None:intergenic |
| ATTTAACACCGATTCATGGA+TGG | 0.513993 | 7_4:+41245884 | Msa1153980:three_prime_UTR |
| TTTAACACCGATTCATGGAT+GGG | 0.515160 | 7_4:+41245885 | Msa1153980:three_prime_UTR |
| TGTGCTGAATATGCCCAATT+GGG | 0.516384 | 7_4:+41245443 | Msa1153980:CDS |
| GCACAATCTCGTGGCTGAAA+GGG | 0.516986 | 7_4:-41245552 | None:intergenic |
| GTGGCATTTGTAGTATCTAA+GGG | 0.517719 | 7_4:-41247392 | None:intergenic |
| TGTGAAGAGACCGCTTTGCC+GGG | 0.518074 | 7_4:-41244136 | None:intergenic |
| ATATTGATAAACCTATGTCT+CGG | 0.524517 | 7_4:-41245627 | None:intergenic |
| CTTTCACGATCATTCATGGC+AGG | 0.535958 | 7_4:-41245513 | None:intergenic |
| GAAGAGAACGCTTTGTGAAG+TGG | 0.541069 | 7_4:-41244184 | None:intergenic |
| GATGTTACCATGGAAGGTTA+CGG | 0.543360 | 7_4:-41244208 | None:intergenic |
| CCGAGATTCCCGCCCTTGAA+GGG | 0.543506 | 7_4:-41245477 | None:intergenic |
| GGTTACGATGTTACCATGGA+AGG | 0.548670 | 7_4:-41244214 | None:intergenic |
| ACTGGATGACCCCGAGACAT+AGG | 0.551501 | 7_4:+41245616 | Msa1153980:CDS |
| AAGGTGGCAAGTCGAAGAAA+AGG | 0.553427 | 7_4:+41245744 | Msa1153980:CDS |
| TTATCCCTCACATAGTAAAA+CGG | 0.557126 | 7_4:-41245594 | None:intergenic |
| TTTCTCGATGCATCAGGCTG+CGG | 0.572249 | 7_4:-41245717 | None:intergenic |
| GGTTACTATGAACCCTTCAA+GGG | 0.573399 | 7_4:+41245465 | Msa1153980:CDS |
| ACTATGAACCCTTCAAGGGC+GGG | 0.575356 | 7_4:+41245469 | Msa1153980:CDS |
| TACTATGAACCCTTCAAGGG+CGG | 0.584210 | 7_4:+41245468 | Msa1153980:CDS |
| CAAGAAGCCCAGGAAGCTGA+AGG | 0.592415 | 7_4:+41245799 | Msa1153980:CDS |
| ATGATCGTGAAAGTGCAAAT+GGG | 0.611860 | 7_4:+41245523 | Msa1153980:CDS |
| TCTCGTGGCTGAAAGGGCAA+GGG | 0.616671 | 7_4:-41245546 | None:intergenic |
| TATTGGTTCAATGATAACGC+TGG | 0.617531 | 7_4:+41247230 | Msa1153980:three_prime_UTR |
| TCGAAGAAAAGGAAGTCTAA+GGG | 0.624050 | 7_4:+41245755 | Msa1153980:CDS |
| AGGCTGCGGTATAACCGGCA+AGG | 0.642668 | 7_4:-41245703 | None:intergenic |
| TCCGAAACAGCACAATCTCG+TGG | 0.644189 | 7_4:-41245561 | None:intergenic |
| TACTCAAACACAAATTCTGG+AGG | 0.645744 | 7_4:+41246305 | Msa1153980:three_prime_UTR |
| CCATCAATTACTAAATGACG+CGG | 0.649018 | 7_4:+41246255 | Msa1153980:three_prime_UTR |
| GATCATTCATGGCAGGCATG+AGG | 0.655695 | 7_4:-41245506 | None:intergenic |
| ACGCGGACTATACAAACAAG+AGG | 0.655818 | 7_4:+41246272 | Msa1153980:three_prime_UTR |
| ATTGATAAACCTATGTCTCG+GGG | 0.666123 | 7_4:-41245625 | None:intergenic |
| TGTTACCATGGAAGGTTACG+GGG | 0.672316 | 7_4:-41244206 | None:intergenic |
| TGGCATTTGTAGTATCTAAG+GGG | 0.692689 | 7_4:-41247391 | None:intergenic |
| GTGCTGAATATGCCCAATTG+GGG | 0.693408 | 7_4:+41245444 | Msa1153980:CDS |
| GTGTTCTCTTCCCGGCAAAG+CGG | 0.696385 | 7_4:+41244126 | Msa1153980:five_prime_UTR |
| TGATGCATCGAGAAATGTGA+AGG | 0.705409 | 7_4:+41245725 | Msa1153980:CDS |
| TGCATCGAGAAATGTGAAGG+TGG | 0.719913 | 7_4:+41245728 | Msa1153980:CDS |
| AGATTGAATTGTGAACAACA+TGG | 0.838604 | 7_4:+41244646 | Msa1153980:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATGAAAAAAAATAGTATTT+GGG | - | chr7_4:41244251-41244270 | None:intergenic | 10.0% |
| !! | TTCTATTATGTATATTTATT+TGG | + | chr7_4:41245281-41245300 | Msa1153980:intron | 10.0% |
| !!! | TTTGTTAAATGAAATTTTAT+AGG | + | chr7_4:41245382-41245401 | Msa1153980:intron | 10.0% |
| !!! | TTTTATTATAAAGATTTTTG+TGG | + | chr7_4:41246399-41246418 | Msa1153980:intron | 10.0% |
| !! | CAATGAAAAAAAATAGTATT+TGG | - | chr7_4:41244252-41244271 | None:intergenic | 15.0% |
| !!! | TTAGTTTCTTTAATTTCAAT+TGG | + | chr7_4:41244311-41244330 | Msa1153980:intron | 15.0% |
| !!! | TAGTTTCTTTAATTTCAATT+GGG | + | chr7_4:41244312-41244331 | Msa1153980:intron | 15.0% |
| !!! | GATAGTATATTTTTATTTTC+CGG | + | chr7_4:41245067-41245086 | Msa1153980:intron | 15.0% |
| !!! | GCTTAATTTTACAATTTAAA+TGG | - | chr7_4:41245936-41245955 | None:intergenic | 15.0% |
| !! | TTAAATTGTAAAATTAAGCA+TGG | + | chr7_4:41245937-41245956 | Msa1153980:intron | 15.0% |
| !!! | AAAGTTTGTTAAATGAATAT+TGG | + | chr7_4:41246017-41246036 | Msa1153980:intron | 15.0% |
| !!! | AAGTTTGTTAAATGAATATT+GGG | + | chr7_4:41246018-41246037 | Msa1153980:intron | 15.0% |
| !! | TTATCAACAAATTAAAGAAT+TGG | + | chr7_4:41246074-41246093 | Msa1153980:intron | 15.0% |
| !!! | AGCTAGAAATTTTTATTTTA+TGG | + | chr7_4:41246345-41246364 | Msa1153980:intron | 15.0% |
| !! | AAATCATCTAAAAATATAGT+TGG | - | chr7_4:41246622-41246641 | None:intergenic | 15.0% |
| !! | TCTTTATTAAGCAAAATTTA+TGG | - | chr7_4:41247153-41247172 | None:intergenic | 15.0% |
| !! | AATACACAAAAACAAATCAA+GGG | - | chr7_4:41244396-41244415 | None:intergenic | 20.0% |
| !! | AAAAAAACATAACTTCAGAT+TGG | - | chr7_4:41244419-41244438 | None:intergenic | 20.0% |
| !!! | AATCTGAAGTTATGTTTTTT+TGG | + | chr7_4:41244418-41244437 | Msa1153980:intron | 20.0% |
| !! | AAGTTACTATTTGACAATAA+AGG | - | chr7_4:41244498-41244517 | None:intergenic | 20.0% |
| !! | ATATGAAAATGAATTTGCAT+TGG | + | chr7_4:41245032-41245051 | Msa1153980:intron | 20.0% |
| !!! | TTCATCACTTTAATTTCTTT+GGG | + | chr7_4:41245184-41245203 | Msa1153980:intron | 20.0% |
| !!! | ACAAAAAAATGCATTTTCAT+TGG | - | chr7_4:41246482-41246501 | None:intergenic | 20.0% |
| !!! | TTTTGTCACAATTTAGATTT+AGG | + | chr7_4:41246496-41246515 | Msa1153980:intron | 20.0% |
| !! | ATAAGTTTGATAGATTTCAT+GGG | + | chr7_4:41246519-41246538 | Msa1153980:intron | 20.0% |
| !!! | TTTCTTCTTTATTGATTGTA+AGG | + | chr7_4:41246746-41246765 | Msa1153980:intron | 20.0% |
| !!! | TTCTTCTTTATTGATTGTAA+GGG | + | chr7_4:41246747-41246766 | Msa1153980:intron | 20.0% |
| !! | TTGTCAATCTACTAATAATT+TGG | + | chr7_4:41247048-41247067 | Msa1153980:intron | 20.0% |
| !!! | AAATACAGAGTATTATGAAT+TGG | + | chr7_4:41247264-41247283 | Msa1153980:three_prime_UTR | 20.0% |
| ! | GAATACACAAAAACAAATCA+AGG | - | chr7_4:41244397-41244416 | None:intergenic | 25.0% |
| ! | AGTAACATTGACACAAAATA+GGG | - | chr7_4:41244567-41244586 | None:intergenic | 25.0% |
| ! | AAGTAACATTGACACAAAAT+AGG | - | chr7_4:41244568-41244587 | None:intergenic | 25.0% |
| !!! | GAGTTGATTTTATGTTCATT+TGG | + | chr7_4:41244709-41244728 | Msa1153980:intron | 25.0% |
| !! | CTTCATCACTTTAATTTCTT+TGG | + | chr7_4:41245183-41245202 | Msa1153980:intron | 25.0% |
| ! | AATTTCCTGACATTGAATTA+CGG | + | chr7_4:41245341-41245360 | Msa1153980:intron | 25.0% |
| ! | ATATTGATAAACCTATGTCT+CGG | - | chr7_4:41245630-41245649 | None:intergenic | 25.0% |
| ! | ATTGTAAAATTAAGCATGGA+TGG | + | chr7_4:41245941-41245960 | Msa1153980:intron | 25.0% |
| ! | ACACAAAGATTGAAAGAATA+AGG | - | chr7_4:41246135-41246154 | None:intergenic | 25.0% |
| ! | TTATTCTTTCAATCTTTGTG+TGG | + | chr7_4:41246134-41246153 | Msa1153980:intron | 25.0% |
| !! | TTTAGTAATTGATGGCATAT+GGG | - | chr7_4:41246250-41246269 | None:intergenic | 25.0% |
| !! | ATTTAGTAATTGATGGCATA+TGG | - | chr7_4:41246251-41246270 | None:intergenic | 25.0% |
| ! | GATAAGTTTGATAGATTTCA+TGG | + | chr7_4:41246518-41246537 | Msa1153980:intron | 25.0% |
| ! | AAGTTTGATTGTTGAAACAT+TGG | + | chr7_4:41246688-41246707 | Msa1153980:intron | 25.0% |
| ! | AGTTAATTGTACAACATAAG+TGG | + | chr7_4:41246786-41246805 | Msa1153980:intron | 25.0% |
| ! | AGTTGTGTTGTAAAACTTAA+TGG | + | chr7_4:41246838-41246857 | Msa1153980:intron | 25.0% |
| ! | TTATCAAAGGACAATTCATT+TGG | - | chr7_4:41246894-41246913 | None:intergenic | 25.0% |
| ! | TCATGTACAGATATTATCAA+AGG | - | chr7_4:41246907-41246926 | None:intergenic | 25.0% |
| !! | TTGATAATATCTGTACATGA+TGG | + | chr7_4:41246907-41246926 | Msa1153980:intron | 25.0% |
| ! | AGATTATACAAAGTCTTTAG+CGG | - | chr7_4:41246954-41246973 | None:intergenic | 25.0% |
| !!! | TTTTTTTTTGCTTTATGTGC+AGG | + | chr7_4:41247205-41247224 | Msa1153980:intron | 25.0% |
| ! | AAAAATGTAGGATCTAAAAG+TGG | - | chr7_4:41247414-41247433 | None:intergenic | 25.0% |
| ! | TCGATTTTTATTCTCAGCAT+AGG | + | chr7_4:41244288-41244307 | Msa1153980:intron | 30.0% |
| ! | TCGAAAATTGTGTTTTCAAC+AGG | + | chr7_4:41244592-41244611 | Msa1153980:intron | 30.0% |
| AGATTGAATTGTGAACAACA+TGG | + | chr7_4:41244646-41244665 | Msa1153980:five_prime_UTR | 30.0% | |
| !! | CAAATGAGCATTGAATCAAA+CGG | - | chr7_4:41244750-41244769 | None:intergenic | 30.0% |
| CAACAATCTAACCATACATA+GGG | - | chr7_4:41245108-41245127 | None:intergenic | 30.0% | |
| TCAACAATCTAACCATACAT+AGG | - | chr7_4:41245109-41245128 | None:intergenic | 30.0% | |
| ATGTATGGTTAGATTGTTGA+AGG | + | chr7_4:41245109-41245128 | Msa1153980:intron | 30.0% | |
| ! | TTTTTCCGTAATTCAATGTC+AGG | - | chr7_4:41245349-41245368 | None:intergenic | 30.0% |
| CAACTACAAAACAACAACAA+AGG | - | chr7_4:41245410-41245429 | None:intergenic | 30.0% | |
| !!! | TTGTTGTTTTGTAGTTGTCA+TGG | + | chr7_4:41245413-41245432 | Msa1153980:intron | 30.0% |
| TTATCCCTCACATAGTAAAA+CGG | - | chr7_4:41245597-41245616 | None:intergenic | 30.0% | |
| TATTGATAAACCTATGTCTC+GGG | - | chr7_4:41245629-41245648 | None:intergenic | 30.0% | |
| TCTGGAAGAACATCATAATT+TGG | - | chr7_4:41245666-41245685 | None:intergenic | 30.0% | |
| TTCACTGTGTATAATGATTC+TGG | + | chr7_4:41245841-41245860 | Msa1153980:three_prime_UTR | 30.0% | |
| !! | TTTCATTTAACACCGATTCA+TGG | + | chr7_4:41245880-41245899 | Msa1153980:three_prime_UTR | 30.0% |
| AAGATTGAAAGAATAAGGAG+AGG | - | chr7_4:41246130-41246149 | None:intergenic | 30.0% | |
| TCTTTGTGTGGAATAGATTA+TGG | + | chr7_4:41246146-41246165 | Msa1153980:intron | 30.0% | |
| ATTCAATTACTTACTCTTGC+AGG | + | chr7_4:41246170-41246189 | Msa1153980:intron | 30.0% | |
| ACATACTCAAACACAAATTC+TGG | + | chr7_4:41246302-41246321 | Msa1153980:three_prime_UTR | 30.0% | |
| !! | GCTTTTAGCTACTTTCTAAT+TGG | - | chr7_4:41246448-41246467 | None:intergenic | 30.0% |
| TTGATAGATTTCATGGGAAT+TGG | + | chr7_4:41246525-41246544 | Msa1153980:intron | 30.0% | |
| GATATTCCCTTAAAAATAGC+AGG | + | chr7_4:41246642-41246661 | Msa1153980:intron | 30.0% | |
| !!! | ATGAAGCCTGCTATTTTTAA+GGG | - | chr7_4:41246651-41246670 | None:intergenic | 30.0% |
| !!! | TATGAAGCCTGCTATTTTTA+AGG | - | chr7_4:41246652-41246671 | None:intergenic | 30.0% |
| ACAATCAAACTTATGCCATA+AGG | - | chr7_4:41246680-41246699 | None:intergenic | 30.0% | |
| ! | TTGAAACATTGGAACTGTTT+TGG | + | chr7_4:41246699-41246718 | Msa1153980:intron | 30.0% |
| ATTGTACAACATAAGTGGAA+AGG | + | chr7_4:41246791-41246810 | Msa1153980:intron | 30.0% | |
| ACATGTGAATTTGAGTAGTT+AGG | + | chr7_4:41247021-41247040 | Msa1153980:intron | 30.0% | |
| GCAATGTACTCAAGAAATAT+TGG | + | chr7_4:41247094-41247113 | Msa1153980:intron | 30.0% | |
| ATGTACTCAAGAAATATTGG+AGG | + | chr7_4:41247097-41247116 | Msa1153980:intron | 30.0% | |
| TGAATTGGTTATCATAGAGT+TGG | + | chr7_4:41247279-41247298 | Msa1153980:three_prime_UTR | 30.0% | |
| TGGCTTGATAAGAAAAATGT+AGG | - | chr7_4:41247426-41247445 | None:intergenic | 30.0% | |
| TGTGAAGTGGAGTAGAATAT+TGG | - | chr7_4:41244174-41244193 | None:intergenic | 35.0% | |
| AGTATTTGGGAGAGAAAGAA+GGG | - | chr7_4:41244238-41244257 | None:intergenic | 35.0% | |
| TAGTATTTGGGAGAGAAAGA+AGG | - | chr7_4:41244239-41244258 | None:intergenic | 35.0% | |
| TTTCACTTAGATTCGATCTG+TGG | + | chr7_4:41244444-41244463 | Msa1153980:intron | 35.0% | |
| !! | TTTGTGTGTTCTAAGGTAGA+TGG | + | chr7_4:41244619-41244638 | Msa1153980:five_prime_UTR | 35.0% |
| !!! | GGTGAGTTTTGTTTAATCGT+TGG | + | chr7_4:41244667-41244686 | Msa1153980:intron | 35.0% |
| TTAAAGTGAACATACGTGCT+GGG | + | chr7_4:41244779-41244798 | Msa1153980:intron | 35.0% | |
| !!! | AGTTTTGGAGAGAAACATCA+TGG | - | chr7_4:41244884-41244903 | None:intergenic | 35.0% |
| ! | TGATCAGTTCACAGAAGTTT+TGG | - | chr7_4:41244899-41244918 | None:intergenic | 35.0% |
| ! | AATGATCGTGAAAGTGCAAA+TGG | + | chr7_4:41245522-41245541 | Msa1153980:CDS | 35.0% |
| ! | ATGATCGTGAAAGTGCAAAT+GGG | + | chr7_4:41245523-41245542 | Msa1153980:CDS | 35.0% |
| ! | TACTCCGTTTTACTATGTGA+GGG | + | chr7_4:41245590-41245609 | Msa1153980:CDS | 35.0% |
| TTTACTATGTGAGGGATAAC+TGG | + | chr7_4:41245598-41245617 | Msa1153980:CDS | 35.0% | |
| ATTGATAAACCTATGTCTCG+GGG | - | chr7_4:41245628-41245647 | None:intergenic | 35.0% | |
| TCGAAGAAAAGGAAGTCTAA+GGG | + | chr7_4:41245755-41245774 | Msa1153980:CDS | 35.0% | |
| !! | ATTTAACACCGATTCATGGA+TGG | + | chr7_4:41245884-41245903 | Msa1153980:three_prime_UTR | 35.0% |
| !! | TTTAACACCGATTCATGGAT+GGG | + | chr7_4:41245885-41245904 | Msa1153980:three_prime_UTR | 35.0% |
| GTAAAACGTTGCAATTCATG+AGG | + | chr7_4:41245970-41245989 | Msa1153980:intron | 35.0% | |
| CCATCAATTACTAAATGACG+CGG | + | chr7_4:41246255-41246274 | Msa1153980:three_prime_UTR | 35.0% | |
| TACTCAAACACAAATTCTGG+AGG | + | chr7_4:41246305-41246324 | Msa1153980:three_prime_UTR | 35.0% | |
| AGGCTTCATATTGTTCCTTA+TGG | + | chr7_4:41246662-41246681 | Msa1153980:intron | 35.0% | |
| !!! | AACATTGGAACTGTTTTGGT+TGG | + | chr7_4:41246703-41246722 | Msa1153980:intron | 35.0% |
| ! | TTTGGTTGGTTGTATGTTGA+TGG | + | chr7_4:41246717-41246736 | Msa1153980:intron | 35.0% |
| TTGATTGTAAGGGATGTTGA+TGG | + | chr7_4:41246757-41246776 | Msa1153980:intron | 35.0% | |
| ATTTCTTGAGTACATTGCAG+AGG | - | chr7_4:41247092-41247111 | None:intergenic | 35.0% | |
| TGCTTTATGTGCAGGTATAT+TGG | + | chr7_4:41247213-41247232 | Msa1153980:intron | 35.0% | |
| !! | TATTGGTTCAATGATAACGC+TGG | + | chr7_4:41247230-41247249 | Msa1153980:three_prime_UTR | 35.0% |
| ATCATAGAGTTGGAGTCTAA+TGG | + | chr7_4:41247289-41247308 | Msa1153980:three_prime_UTR | 35.0% | |
| TCATAGAGTTGGAGTCTAAT+GGG | + | chr7_4:41247290-41247309 | Msa1153980:three_prime_UTR | 35.0% | |
| TGGCATTTGTAGTATCTAAG+GGG | - | chr7_4:41247394-41247413 | None:intergenic | 35.0% | |
| GTGGCATTTGTAGTATCTAA+GGG | - | chr7_4:41247395-41247414 | None:intergenic | 35.0% | |
| AGTGGCATTTGTAGTATCTA+AGG | - | chr7_4:41247396-41247415 | None:intergenic | 35.0% | |
| ATGTTACCATGGAAGGTTAC+GGG | - | chr7_4:41244210-41244229 | None:intergenic | 40.0% | |
| GATGTTACCATGGAAGGTTA+CGG | - | chr7_4:41244211-41244230 | None:intergenic | 40.0% | |
| ! | AGGTGCTTTTGTGTGTTCTA+AGG | + | chr7_4:41244612-41244631 | Msa1153980:intron | 40.0% |
| CTTAAAGTGAACATACGTGC+TGG | + | chr7_4:41244778-41244797 | Msa1153980:intron | 40.0% | |
| AGTTGCGACTCACTAAGAAA+AGG | + | chr7_4:41244848-41244867 | Msa1153980:intron | 40.0% | |
| ! | TCATTTTCATATGCTGCTGC+TGG | - | chr7_4:41245024-41245043 | None:intergenic | 40.0% |
| AGAGCTTAATGCCCTATGTA+TGG | + | chr7_4:41245094-41245113 | Msa1153980:intron | 40.0% | |
| CACAATGACGACGACTATAT+TGG | + | chr7_4:41245247-41245266 | Msa1153980:intron | 40.0% | |
| ATGTGCTGAATATGCCCAAT+TGG | + | chr7_4:41245442-41245461 | Msa1153980:CDS | 40.0% | |
| TGTGCTGAATATGCCCAATT+GGG | + | chr7_4:41245443-41245462 | Msa1153980:CDS | 40.0% | |
| GGTTCATAGTAACCCCAATT+GGG | - | chr7_4:41245459-41245478 | None:intergenic | 40.0% | |
| GGTTACTATGAACCCTTCAA+GGG | + | chr7_4:41245465-41245484 | Msa1153980:CDS | 40.0% | |
| TGCACTTTCACGATCATTCA+TGG | - | chr7_4:41245520-41245539 | None:intergenic | 40.0% | |
| ! | CTACTCCGTTTTACTATGTG+AGG | + | chr7_4:41245589-41245608 | Msa1153980:CDS | 40.0% |
| TTCACATTTCTCGATGCATC+AGG | - | chr7_4:41245726-41245745 | None:intergenic | 40.0% | |
| TGATGCATCGAGAAATGTGA+AGG | + | chr7_4:41245725-41245744 | Msa1153980:CDS | 40.0% | |
| GTCGAAGAAAAGGAAGTCTA+AGG | + | chr7_4:41245754-41245773 | Msa1153980:CDS | 40.0% | |
| ATATCATCCTTCAGCTTCCT+GGG | - | chr7_4:41245809-41245828 | None:intergenic | 40.0% | |
| AATATCATCCTTCAGCTTCC+TGG | - | chr7_4:41245810-41245829 | None:intergenic | 40.0% | |
| GAGATTACCCATCCATGAAT+CGG | - | chr7_4:41245895-41245914 | None:intergenic | 40.0% | |
| CCGCGTCATTTAGTAATTGA+TGG | - | chr7_4:41246258-41246277 | None:intergenic | 40.0% | |
| !! | TTGGTTGTATGTTGATGGCT+AGG | + | chr7_4:41246722-41246741 | Msa1153980:intron | 40.0% |
| GAAAGGAATTTCGAGAACCT+AGG | + | chr7_4:41246808-41246827 | Msa1153980:intron | 40.0% | |
| CAACACAACTCAAATCTCCT+AGG | - | chr7_4:41246828-41246847 | None:intergenic | 40.0% | |
| CACACTTTGCTTCAAATTGG+TGG | - | chr7_4:41247371-41247390 | None:intergenic | 40.0% | |
| GAAGAGAACGCTTTGTGAAG+TGG | - | chr7_4:41244187-41244206 | None:intergenic | 45.0% | |
| TGTTACCATGGAAGGTTACG+GGG | - | chr7_4:41244209-41244228 | None:intergenic | 45.0% | |
| GGTTACGATGTTACCATGGA+AGG | - | chr7_4:41244217-41244236 | None:intergenic | 45.0% | |
| GAAGGGTTACGATGTTACCA+TGG | - | chr7_4:41244221-41244240 | None:intergenic | 45.0% | |
| ACGAAAGCAGCAGATCACTA+TGG | + | chr7_4:41244813-41244832 | Msa1153980:intron | 45.0% | |
| CGAAAGCAGCAGATCACTAT+GGG | + | chr7_4:41244814-41244833 | Msa1153980:intron | 45.0% | |
| TGCGACTCACTAAGAAAAGG+TGG | + | chr7_4:41244851-41244870 | Msa1153980:intron | 45.0% | |
| GCGACTCACTAAGAAAAGGT+GGG | + | chr7_4:41244852-41244871 | Msa1153980:intron | 45.0% | |
| ! | AGGGCATTAAGCTCTCTTAC+CGG | - | chr7_4:41245089-41245108 | None:intergenic | 45.0% |
| GTGCTGAATATGCCCAATTG+GGG | + | chr7_4:41245444-41245463 | Msa1153980:CDS | 45.0% | |
| GGGTTCATAGTAACCCCAAT+TGG | - | chr7_4:41245460-41245479 | None:intergenic | 45.0% | |
| GGGTTACTATGAACCCTTCA+AGG | + | chr7_4:41245464-41245483 | Msa1153980:CDS | 45.0% | |
| TACTATGAACCCTTCAAGGG+CGG | + | chr7_4:41245468-41245487 | Msa1153980:CDS | 45.0% | |
| CTTTCACGATCATTCATGGC+AGG | - | chr7_4:41245516-41245535 | None:intergenic | 45.0% | |
| TGCATCGAGAAATGTGAAGG+TGG | + | chr7_4:41245728-41245747 | Msa1153980:CDS | 45.0% | |
| AAGGTGGCAAGTCGAAGAAA+AGG | + | chr7_4:41245744-41245763 | Msa1153980:CDS | 45.0% | |
| ! | ACGCGGACTATACAAACAAG+AGG | + | chr7_4:41246272-41246291 | Msa1153980:three_prime_UTR | 45.0% |
| GAATTGGCTATGTGAGCTTG+AGG | + | chr7_4:41246541-41246560 | Msa1153980:intron | 45.0% | |
| ! | TTGGAGGTGATTTGCCTTCT+AGG | + | chr7_4:41247113-41247132 | Msa1153980:intron | 45.0% |
| ! | TGGAGGTGATTTGCCTTCTA+GGG | + | chr7_4:41247114-41247133 | Msa1153980:intron | 45.0% |
| GGGCACACTTTGCTTCAAAT+TGG | - | chr7_4:41247374-41247393 | None:intergenic | 45.0% | |
| GCCGGGAAGAGAACACATAT+TGG | - | chr7_4:41244122-41244141 | None:intergenic | 50.0% | |
| TTGTGAAGAGACCGCTTTGC+CGG | - | chr7_4:41244140-41244159 | None:intergenic | 50.0% | |
| ACTATGAACCCTTCAAGGGC+GGG | + | chr7_4:41245469-41245488 | Msa1153980:CDS | 50.0% | |
| GATCATTCATGGCAGGCATG+AGG | - | chr7_4:41245509-41245528 | None:intergenic | 50.0% | |
| GCACAATCTCGTGGCTGAAA+GGG | - | chr7_4:41245555-41245574 | None:intergenic | 50.0% | |
| AGCACAATCTCGTGGCTGAA+AGG | - | chr7_4:41245556-41245575 | None:intergenic | 50.0% | |
| !! | GCCACGAGATTGTGCTGTTT+CGG | + | chr7_4:41245560-41245579 | Msa1153980:CDS | 50.0% |
| TCCGAAACAGCACAATCTCG+TGG | - | chr7_4:41245564-41245583 | None:intergenic | 50.0% | |
| !! | GAGAGTGCTTGTGATGCTTC+TGG | - | chr7_4:41245684-41245703 | None:intergenic | 50.0% |
| ATCACAAGCACTCTCCTTGC+CGG | + | chr7_4:41245689-41245708 | Msa1153980:CDS | 50.0% | |
| TTTCTCGATGCATCAGGCTG+CGG | - | chr7_4:41245720-41245739 | None:intergenic | 50.0% | |
| !! | TTCCTGGGCTTCTTGGCTTT+TGG | - | chr7_4:41245794-41245813 | None:intergenic | 50.0% |
| GGTTGTGACATTGCTCACTG+AGG | + | chr7_4:41246420-41246439 | Msa1153980:intron | 50.0% | |
| TGAGCTTGAGGACAGCAAGA+GGG | + | chr7_4:41246553-41246572 | Msa1153980:intron | 50.0% | |
| !! | GTGATTTGCCTTCTAGGGCT+GGG | + | chr7_4:41247119-41247138 | Msa1153980:intron | 50.0% |
| !! | TGATTTGCCTTCTAGGGCTG+GGG | + | chr7_4:41247120-41247139 | Msa1153980:intron | 50.0% |
| GTGTTCTCTTCCCGGCAAAG+CGG | + | chr7_4:41244126-41244145 | Msa1153980:five_prime_UTR | 55.0% | |
| TGTGAAGAGACCGCTTTGCC+GGG | - | chr7_4:41244139-41244158 | None:intergenic | 55.0% | |
| CTCTTCCCCGTAACCTTCCA+TGG | + | chr7_4:41244201-41244220 | Msa1153980:five_prime_UTR | 55.0% | |
| ! | TGCTGCTGCTGGCAGTTTTC+TGG | - | chr7_4:41245013-41245032 | None:intergenic | 55.0% |
| TCTCGTGGCTGAAAGGGCAA+GGG | - | chr7_4:41245549-41245568 | None:intergenic | 55.0% | |
| ATCTCGTGGCTGAAAGGGCA+AGG | - | chr7_4:41245550-41245569 | None:intergenic | 55.0% | |
| ACTGGATGACCCCGAGACAT+AGG | + | chr7_4:41245616-41245635 | Msa1153980:CDS | 55.0% | |
| GCATCAGGCTGCGGTATAAC+CGG | - | chr7_4:41245711-41245730 | None:intergenic | 55.0% | |
| !! | GGGCTTCTTGGCTTTTGGAG+TGG | - | chr7_4:41245789-41245808 | None:intergenic | 55.0% |
| CTCCAAAAGCCAAGAAGCCC+AGG | + | chr7_4:41245789-41245808 | Msa1153980:CDS | 55.0% | |
| CTTCAGCTTCCTGGGCTTCT+TGG | - | chr7_4:41245801-41245820 | None:intergenic | 55.0% | |
| CAAGAAGCCCAGGAAGCTGA+AGG | + | chr7_4:41245799-41245818 | Msa1153980:CDS | 55.0% | |
| GTGAGCTTGAGGACAGCAAG+AGG | + | chr7_4:41246552-41246571 | Msa1153980:intron | 55.0% | |
| !! | GGTGATTTGCCTTCTAGGGC+TGG | + | chr7_4:41247118-41247137 | Msa1153980:intron | 55.0% |
| CCGAGATTCCCGCCCTTGAA+GGG | - | chr7_4:41245480-41245499 | None:intergenic | 60.0% | |
| CCCTTCAAGGGCGGGAATCT+CGG | + | chr7_4:41245477-41245496 | Msa1153980:CDS | 60.0% | |
| ACCGAGATTCCCGCCCTTGA+AGG | - | chr7_4:41245481-41245500 | None:intergenic | 60.0% | |
| AGGCTGCGGTATAACCGGCA+AGG | - | chr7_4:41245706-41245725 | None:intergenic | 60.0% | |
| ACCTTTGCCCCAGCCCTAGA+AGG | - | chr7_4:41247130-41247149 | None:intergenic | 60.0% | |
| !! | GCCTTCTAGGGCTGGGGCAA+AGG | + | chr7_4:41247126-41247145 | Msa1153980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 41244119 | 41247446 | 41244119 | ID=Msa1153980;Name=Msa1153980 |
| chr7_4 | mRNA | 41244119 | 41247446 | 41244119 | ID=Msa1153980-mRNA-1;Parent=Msa1153980;Name=Msa1153980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=163|0.75|1|1|0|0|5|443|128 |
| chr7_4 | exon | 41244119 | 41244222 | 41244119 | ID=Msa1153980-mRNA-1:exon:9963;Parent=Msa1153980-mRNA-1 |
| chr7_4 | exon | 41244614 | 41244667 | 41244614 | ID=Msa1153980-mRNA-1:exon:9964;Parent=Msa1153980-mRNA-1 |
| chr7_4 | exon | 41245427 | 41245906 | 41245427 | ID=Msa1153980-mRNA-1:exon:9965;Parent=Msa1153980-mRNA-1 |
| chr7_4 | exon | 41246192 | 41246326 | 41246192 | ID=Msa1153980-mRNA-1:exon:9966;Parent=Msa1153980-mRNA-1 |
| chr7_4 | exon | 41247227 | 41247446 | 41247227 | ID=Msa1153980-mRNA-1:exon:9967;Parent=Msa1153980-mRNA-1 |
| chr7_4 | five_prime_UTR | 41244119 | 41244222 | 41244119 | ID=Msa1153980-mRNA-1:five_prime_utr;Parent=Msa1153980-mRNA-1 |
| chr7_4 | five_prime_UTR | 41244614 | 41244667 | 41244614 | ID=Msa1153980-mRNA-1:five_prime_utr;Parent=Msa1153980-mRNA-1 |
| chr7_4 | five_prime_UTR | 41245427 | 41245431 | 41245427 | ID=Msa1153980-mRNA-1:five_prime_utr;Parent=Msa1153980-mRNA-1 |
| chr7_4 | CDS | 41245432 | 41245818 | 41245432 | ID=Msa1153980-mRNA-1:cds;Parent=Msa1153980-mRNA-1 |
| chr7_4 | three_prime_UTR | 41245819 | 41245906 | 41245819 | ID=Msa1153980-mRNA-1:three_prime_utr;Parent=Msa1153980-mRNA-1 |
| chr7_4 | three_prime_UTR | 41246192 | 41246326 | 41246192 | ID=Msa1153980-mRNA-1:three_prime_utr;Parent=Msa1153980-mRNA-1 |
| chr7_4 | three_prime_UTR | 41247227 | 41247446 | 41247227 | ID=Msa1153980-mRNA-1:three_prime_utr;Parent=Msa1153980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
