AlfalfaGEDB | Msa1153980

M. sativa cultivar zhongmu-4 / Msa1153980

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009719 GO:0009723 GO:0009725 GO:0009889 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF06217.15

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1153980	XP_039685292.1	78.295	129	14	1	1	115	1	129	7.84e-63	203

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1153980	I3TAB3	78.295	129	14	1	1	115	1	129	3.74e-63	203

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TFs/TRs:

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Gene ID	Type	Classification
Msa1153980	TF	BBR-BPC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0520410	Msa1153980	0.814242	1.702623e-51	-8.615850e-47
Msa0606960	Msa1153980	0.815800	7.678706e-52	-8.615850e-47
Msa1009560	Msa1153980	0.807369	5.227867e-50	-8.615850e-47
Msa1153980	Msa1306260	0.809331	1.995084e-50	-8.615850e-47
Msa1153980	Msa1405570	0.810304	1.232084e-50	-8.615850e-47
Msa1153980	Msa1441350	0.979917	4.952549e-149	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1153980	MtrunA17_Chr8g0375531	78.295	129	14	1	1	115	1	129	7.21e-67	203
Msa1153980	MtrunA17_Chr2g0296951	92.500	40	3	0	64	103	1	40	8.85e-21	79.7

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 84 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATACAGAGTATTATGAAT+TGG	0.412732	7_4:+41247264	Msa1153980:three_prime_UTR
AAGGTGGCAAGTCGAAGAAA+AGG	0.553427	7_4:+41245744	Msa1153980:CDS
AATATCATCCTTCAGCTTCC+TGG	0.309433	7_4:-41245807	None:intergenic
AATGATCGTGAAAGTGCAAA+TGG	0.492328	7_4:+41245522	Msa1153980:CDS
ACATACTCAAACACAAATTC+TGG	0.377907	7_4:+41246302	Msa1153980:three_prime_UTR
ACCGAGATTCCCGCCCTTGA+AGG	0.457782	7_4:-41245478	None:intergenic
ACGCGGACTATACAAACAAG+AGG	0.655818	7_4:+41246272	Msa1153980:three_prime_UTR
ACTATGAACCCTTCAAGGGC+GGG	0.575356	7_4:+41245469	Msa1153980:CDS
ACTGGATGACCCCGAGACAT+AGG	0.551501	7_4:+41245616	Msa1153980:CDS
AGATTGAATTGTGAACAACA+TGG	0.838604	7_4:+41244646	Msa1153980:five_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGATTGAATTGTGAACAACA+TGG	+	chr7_4:41244646-41244665	Msa1153980:five_prime_UTR	30.0%
CAACAATCTAACCATACATA+GGG	-	chr7_4:41245108-41245127	None:intergenic	30.0%
TCAACAATCTAACCATACAT+AGG	-	chr7_4:41245109-41245128	None:intergenic	30.0%
ATGTATGGTTAGATTGTTGA+AGG	+	chr7_4:41245109-41245128	Msa1153980:intron	30.0%
CAACTACAAAACAACAACAA+AGG	-	chr7_4:41245410-41245429	None:intergenic	30.0%
TTATCCCTCACATAGTAAAA+CGG	-	chr7_4:41245597-41245616	None:intergenic	30.0%
TATTGATAAACCTATGTCTC+GGG	-	chr7_4:41245629-41245648	None:intergenic	30.0%
TCTGGAAGAACATCATAATT+TGG	-	chr7_4:41245666-41245685	None:intergenic	30.0%
TTCACTGTGTATAATGATTC+TGG	+	chr7_4:41245841-41245860	Msa1153980:three_prime_UTR	30.0%
AAGATTGAAAGAATAAGGAG+AGG	-	chr7_4:41246130-41246149	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	41244119	41247446	41244119	ID=Msa1153980;Name=Msa1153980
chr7_4	mRNA	41244119	41247446	41244119	ID=Msa1153980-mRNA-1;Parent=Msa1153980;Name=Msa1153980-mRNA-1;_AED=0.11;_eAED=0.11;_QI=163\|0.75\|1\|1\|0\|0\|5\|443\|128
chr7_4	exon	41244119	41244222	41244119	ID=Msa1153980-mRNA-1:exon:9963;Parent=Msa1153980-mRNA-1
chr7_4	exon	41244614	41244667	41244614	ID=Msa1153980-mRNA-1:exon:9964;Parent=Msa1153980-mRNA-1
chr7_4	exon	41245427	41245906	41245427	ID=Msa1153980-mRNA-1:exon:9965;Parent=Msa1153980-mRNA-1
chr7_4	exon	41246192	41246326	41246192	ID=Msa1153980-mRNA-1:exon:9966;Parent=Msa1153980-mRNA-1
chr7_4	exon	41247227	41247446	41247227	ID=Msa1153980-mRNA-1:exon:9967;Parent=Msa1153980-mRNA-1
chr7_4	five_prime_UTR	41244119	41244222	41244119	ID=Msa1153980-mRNA-1:five_prime_utr;Parent=Msa1153980-mRNA-1
chr7_4	five_prime_UTR	41244614	41244667	41244614	ID=Msa1153980-mRNA-1:five_prime_utr;Parent=Msa1153980-mRNA-1
chr7_4	five_prime_UTR	41245427	41245431	41245427	ID=Msa1153980-mRNA-1:five_prime_utr;Parent=Msa1153980-mRNA-1
chr7_4	CDS	41245432	41245818	41245432	ID=Msa1153980-mRNA-1:cds;Parent=Msa1153980-mRNA-1
chr7_4	three_prime_UTR	41245819	41245906	41245819	ID=Msa1153980-mRNA-1:three_prime_utr;Parent=Msa1153980-mRNA-1
chr7_4	three_prime_UTR	41246192	41246326	41246192	ID=Msa1153980-mRNA-1:three_prime_utr;Parent=Msa1153980-mRNA-1
chr7_4	three_prime_UTR	41247227	41247446	41247227	ID=Msa1153980-mRNA-1:three_prime_utr;Parent=Msa1153980-mRNA-1

Gene Sequence

>Msa1153980

ATGGATGATGATGTGCTGAATATGCCCAATTGGGGTTACTATGAACCCTTCAAGGGCGGGAATCTCGGTCTGAACCTCATGCCTGCCATGAATGATCGTGAAAGTGCAAATGGGCCCTTGCCCTTTCAGCCACGAGATTGTGCTGTTTCGGAGTCTGCTACTCCGTTTTACTATGTGAGGGATAACTGGATGACCCCGAGACATAGGTTTATCAATATGCAGCTGACAAATCCAAATTATGATGTTCTTCCAGAAGCATCACAAGCACTCTCCTTGCCGGTTATACCGCAGCCTGATGCATCGAGAAATGTGAAGGTGGCAAGTCGAAGAAAAGGAAGTCTAAGGGTGCTGTTACCACTCCAAAAGCCAAGAAGCCCAGGAAGCTGA

Protein sequence

>Msa1153980

MDDDVLNMPNWGYYEPFKGGNLGLNLMPAMNDRESANGPLPFQPRDCAVSESATPFYYVRDNWMTPRHRFINMQLTNPNYDVLPEASQALSLPVIPQPDASRNVKVASRRKGSLRVLLPLQKPRSPGS*