Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0803020 | Msa1444590 | 0.830598 | 2.683583e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 86 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTTCTCTTTGTTGTTT+AGG | 0.162534 | tig0030761:-6157 | Msa1444590:three_prime_UTR |
| TGTCTTCTCTTTGTTGTTTA+GGG | 0.177252 | tig0030761:-6156 | Msa1444590:three_prime_UTR |
| TGCTTACTTATGGTGATATT+TGG | 0.212646 | tig0030761:-6369 | Msa1444590:three_prime_UTR |
| CGGAGTTCGGGCGTGTCTTT+GGG | 0.218987 | tig0030761:+9017 | None:intergenic |
| ATGGAATTGAAATTGGAATT+TGG | 0.237834 | tig0030761:+9220 | None:intergenic |
| TACCTGATCTCATGAATAAC+TGG | 0.250215 | tig0030761:-6232 | Msa1444590:three_prime_UTR |
| TTTAGCATCTGCTATCTTCT+TGG | 0.250765 | tig0030761:+8166 | None:intergenic |
| TCCTCTCTATGTTTGTGTTT+GGG | 0.253705 | tig0030761:-6123 | Msa1444590:three_prime_UTR |
| AATTGGAATTTGGTGGAAAT+TGG | 0.257077 | tig0030761:+9230 | None:intergenic |
| CTCCTCTCTATGTTTGTGTT+TGG | 0.263167 | tig0030761:-6124 | Msa1444590:three_prime_UTR |
| AGAACAGCATACCCTTCTTT+TGG | 0.265138 | tig0030761:-7884 | Msa1444590:three_prime_UTR |
| AGAATCGATGGAATTGAAAT+TGG | 0.269066 | tig0030761:+9213 | None:intergenic |
| TATCTAGGCGTGCTTACTTA+TGG | 0.312349 | tig0030761:-6379 | Msa1444590:intron |
| TCACAGTTTCTCGCGGAGTT+CGG | 0.312554 | tig0030761:+9004 | None:intergenic |
| GAAGATAGCAGATGCTAAAT+TGG | 0.316353 | tig0030761:-8162 | Msa1444590:three_prime_UTR |
| CACAGTTTCTCGCGGAGTTC+GGG | 0.319462 | tig0030761:+9005 | None:intergenic |
| ATACTGCATTTGATTGATAA+TGG | 0.331585 | tig0030761:+6305 | None:intergenic |
| GAAGGAAATCTCATTATCTA+AGG | 0.366910 | tig0030761:+7275 | None:intergenic |
| GGTCTTGTTTGCCGTTGATT+TGG | 0.369827 | tig0030761:+9123 | None:intergenic |
| GTGGAAATTGGAGGAAGTAT+TGG | 0.373888 | tig0030761:+9242 | None:intergenic |
| TGAGAGATCACTCTTCATTA+TGG | 0.375752 | tig0030761:-8984 | Msa1444590:three_prime_UTR |
| CTCAATGATAGCTTCGTTGA+AGG | 0.380708 | tig0030761:+7257 | None:intergenic |
| TTACTTCACCTATCTGCTGC+TGG | 0.383436 | tig0030761:+7208 | None:intergenic |
| CATCTGGTTTCGTGCACGGC+GGG | 0.394456 | tig0030761:-6194 | Msa1444590:three_prime_UTR |
| ACAAAGATCAAGCTCATCTT+TGG | 0.398928 | tig0030761:-6903 | Msa1444590:intron |
| GAGACTTCATATTGGACAAT+TGG | 0.402688 | tig0030761:-8888 | Msa1444590:three_prime_UTR |
| CAAAAGTGGTATCTCGATCT+AGG | 0.415172 | tig0030761:-5999 | Msa1444590:three_prime_UTR |
| TCTCCGCCCTGCAGCTATAC+AGG | 0.431818 | tig0030761:-7940 | Msa1444590:intron |
| ACTCTTCATTATGGCTGAAT+CGG | 0.434070 | tig0030761:-8975 | Msa1444590:three_prime_UTR |
| GTTGATTTGGTTTCGCCGGC+CGG | 0.434566 | tig0030761:+9136 | None:intergenic |
| CACATGAAGTTCAGCCATCC+AGG | 0.452358 | tig0030761:-8052 | Msa1444590:intron |
| TCTGGTTTCGTGCACGGCGG+GGG | 0.452388 | tig0030761:-6192 | Msa1444590:three_prime_UTR |
| AATGAAAATGAATGTGTTGT+TGG | 0.453423 | tig0030761:+9283 | None:intergenic |
| CAAGAAATCCAGCAGCAGAT+AGG | 0.473920 | tig0030761:-7216 | Msa1444590:three_prime_UTR |
| TTCTCATCTGGTTTCGTGCA+CGG | 0.474599 | tig0030761:-6198 | Msa1444590:three_prime_UTR |
| ACCCAGTTATTCATGAGATC+AGG | 0.475347 | tig0030761:+6230 | None:intergenic |
| TGAACTTCATGTGGAACAAA+AGG | 0.477693 | tig0030761:+8062 | None:intergenic |
| CCGACTCAAGCGGTAGCTTC+CGG | 0.478496 | tig0030761:-9101 | Msa1444590:CDS |
| CATGAGCAAGGAGCAATGAT+TGG | 0.486298 | tig0030761:-7153 | Msa1444590:intron |
| CTTCTCTTTGTTGTTTAGGG+TGG | 0.487751 | tig0030761:-6153 | Msa1444590:three_prime_UTR |
| TTCATGAGAATTCTCAATGT+TGG | 0.493350 | tig0030761:+6970 | None:intergenic |
| ACCTTCTGGATTCCAAAAGA+AGG | 0.493712 | tig0030761:+7872 | None:intergenic |
| GAAATGATGAAACAACACTT+TGG | 0.494490 | tig0030761:+9319 | None:intergenic |
| TGCCGTTGATTTGGTTTCGC+CGG | 0.496080 | tig0030761:+9132 | None:intergenic |
| CTGTATTTGCAACTCAAAAG+TGG | 0.498490 | tig0030761:-6013 | Msa1444590:three_prime_UTR |
| CAGAGACTCGTTAACACTCT+CGG | 0.506952 | tig0030761:-9044 | Msa1444590:exon |
| ATCTGGTTTCGTGCACGGCG+GGG | 0.506953 | tig0030761:-6193 | Msa1444590:three_prime_UTR |
| CACAAGACGAGACTTCATAT+TGG | 0.509468 | tig0030761:-8896 | Msa1444590:three_prime_UTR |
| TGGAATTTGGTGGAAATTGG+AGG | 0.513543 | tig0030761:+9233 | None:intergenic |
| GGAGTTCGGGCGTGTCTTTG+GGG | 0.514990 | tig0030761:+9018 | None:intergenic |
| ATTGGAGTGGAAGCGAGGAA+TGG | 0.516640 | tig0030761:+9260 | None:intergenic |
| TTCTCATGAAGCCACTGCCC+AGG | 0.520606 | tig0030761:-6957 | Msa1444590:three_prime_UTR |
| CCGGAAGCTACCGCTTGAGT+CGG | 0.529539 | tig0030761:+9101 | None:intergenic |
| GTTGCAAATACAGGTAAAGA+AGG | 0.529918 | tig0030761:+6023 | None:intergenic |
| ACAGCGTCTTGCAGCTGAGA+GGG | 0.536746 | tig0030761:-8099 | Msa1444590:three_prime_UTR |
| GAAGTATTGGAGTGGAAGCG+AGG | 0.538080 | tig0030761:+9255 | None:intergenic |
| GTTAACGAGTCTCTGAAAAG+TGG | 0.541432 | tig0030761:+9052 | None:intergenic |
| GCTGTACTTGTTCATGAGCA+AGG | 0.550972 | tig0030761:-7165 | Msa1444590:three_prime_UTR |
| GAATTGAAATTGGAATTTGG+TGG | 0.558139 | tig0030761:+9223 | None:intergenic |
| ACCTGATCTCATGAATAACT+GGG | 0.563365 | tig0030761:-6231 | Msa1444590:three_prime_UTR |
| CCTTCTGGATTCCAAAAGAA+GGG | 0.568913 | tig0030761:+7873 | None:intergenic |
| CTTCAACGAAGCTATCATTG+AGG | 0.569106 | tig0030761:-7256 | Msa1444590:three_prime_UTR |
| TTCAAGACTTAGAGTCCGGC+CGG | 0.574901 | tig0030761:-9151 | Msa1444590:CDS |
| GAGTTCGGGCGTGTCTTTGG+GGG | 0.575373 | tig0030761:+9019 | None:intergenic |
| CAATATGAAGTCTCGTCTTG+TGG | 0.580440 | tig0030761:+8897 | None:intergenic |
| GGCCGGCGAAACCAAATCAA+CGG | 0.582106 | tig0030761:-9134 | Msa1444590:CDS |
| CTGGATGGCTGAACTTCATG+TGG | 0.589529 | tig0030761:+8053 | None:intergenic |
| AGATCAGGTAAAACATCACT+TGG | 0.591366 | tig0030761:+6245 | None:intergenic |
| AGCTATACAGGCAGTGAAGT+AGG | 0.592494 | tig0030761:-7928 | Msa1444590:three_prime_UTR |
| ATCATTGAGGAAAGAGAACA+AGG | 0.597740 | tig0030761:-7243 | Msa1444590:three_prime_UTR |
| GAGTTTCTAGAGAGAATCGA+TGG | 0.598098 | tig0030761:+9201 | None:intergenic |
| ACATAATTTACACAACAAGC+AGG | 0.602505 | tig0030761:+6080 | None:intergenic |
| CACAGCGTCTTGCAGCTGAG+AGG | 0.606915 | tig0030761:-8100 | Msa1444590:three_prime_UTR |
| TCATATTGGACAATTGGTGA+AGG | 0.616859 | tig0030761:-8882 | Msa1444590:three_prime_UTR |
| TCCCAAACACAAACATAGAG+AGG | 0.619849 | tig0030761:+6122 | None:intergenic |
| AATTGGAGGAAGTATTGGAG+TGG | 0.624685 | tig0030761:+9247 | None:intergenic |
| TCATCTGGTTTCGTGCACGG+CGG | 0.625030 | tig0030761:-6195 | Msa1444590:three_prime_UTR |
| TCGACGTGGACGTACGAGGA+AGG | 0.629648 | tig0030761:-9357 | Msa1444590:five_prime_UTR |
| TTATTCATTCTGCAGACAGG+AGG | 0.640635 | tig0030761:-7304 | Msa1444590:intron |
| ACGTGTGTTGTGTGTCGACG+TGG | 0.644069 | tig0030761:-9371 | Msa1444590:five_prime_UTR |
| GAGTCTCTGAAAAGTGGAGA+CGG | 0.652024 | tig0030761:+9058 | None:intergenic |
| TGATCTCTCACAGTTTCTCG+CGG | 0.652360 | tig0030761:+8997 | None:intergenic |
| CAAACAAGACCCGACTCAAG+CGG | 0.664630 | tig0030761:-9111 | Msa1444590:CDS |
| ACAATTGGTGAAGGATACGT+CGG | 0.684662 | tig0030761:-8873 | Msa1444590:three_prime_UTR |
| GGTGTTGATCTGAAACACGC+CGG | 0.724240 | tig0030761:+9082 | None:intergenic |
| TCTCTGAAAAGTGGAGACGG+CGG | 0.749722 | tig0030761:+9061 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAAATAAGTTATAT+TGG | + | tig0030761:6772-6791 | None:intergenic | 10.0% |
| !! | TTACATATAAATAATACAAT+AGG | + | tig0030761:7877-7896 | None:intergenic | 10.0% |
| !! | CAACAAAAAATAAAAAATAA+AGG | + | tig0030761:8261-8280 | None:intergenic | 10.0% |
| !! | TTATTAACTATATATTATGT+AGG | + | tig0030761:8658-8677 | None:intergenic | 10.0% |
| !! | AATATATAGTTAATAACTAT+AGG | - | tig0030761:8662-8681 | Msa1444590:intron | 10.0% |
| !! | TCAAATTAATCAAAGTTTAA+TGG | - | tig0030761:6619-6638 | Msa1444590:intron | 15.0% |
| !! | TTTAATTGATCATAATGAAT+CGG | - | tig0030761:6978-6997 | Msa1444590:three_prime_UTR | 15.0% |
| !! | TATCACATCATATATTATAT+TGG | + | tig0030761:7647-7666 | None:intergenic | 15.0% |
| !! | AAAAATAAAAAATAAAGGGT+GGG | + | tig0030761:8256-8275 | None:intergenic | 15.0% |
| !! | AAAAAATAAAAAATAAAGGG+TGG | + | tig0030761:8257-8276 | None:intergenic | 15.0% |
| !!! | CTTTAAAAGATAAAAGAAAA+AGG | + | tig0030761:8911-8930 | None:intergenic | 15.0% |
| !!! | TTCGATTTTAAGATATTGAT+TGG | - | tig0030761:6434-6453 | Msa1444590:intron | 20.0% |
| !! | TTAATTGATCATAATGAATC+GGG | - | tig0030761:6979-6998 | Msa1444590:three_prime_UTR | 20.0% |
| !! | AATAAACAACTAACAAAACA+TGG | + | tig0030761:7095-7114 | None:intergenic | 20.0% |
| !! | ACATTAAACTCTAATAACAT+CGG | + | tig0030761:7351-7370 | None:intergenic | 20.0% |
| !!! | AACATCAATTATTTCTCAAA+AGG | - | tig0030761:7834-7853 | Msa1444590:intron | 20.0% |
| !!! | TCATCAAATTTAATTTCATG+TGG | + | tig0030761:7992-8011 | None:intergenic | 20.0% |
| !!! | TTTCATTTTGTAGATGATAT+TGG | - | tig0030761:8375-8394 | Msa1444590:intron | 20.0% |
| !!! | TTCATTTTGTAGATGATATT+GGG | - | tig0030761:8376-8395 | Msa1444590:intron | 20.0% |
| !! | AATAACTATAGGAGTTAAAA+AGG | - | tig0030761:8673-8692 | Msa1444590:intron | 20.0% |
| !! | ATAACTATAGGAGTTAAAAA+GGG | - | tig0030761:8674-8693 | Msa1444590:intron | 20.0% |
| !! | GCATTTCATTTCTATTTATA+TGG | - | tig0030761:8769-8788 | Msa1444590:intron | 20.0% |
| !! | ATTTCTATTTATATGGAGAA+AGG | - | tig0030761:8776-8795 | Msa1444590:intron | 20.0% |
| !! | TTTCTATTTATATGGAGAAA+GGG | - | tig0030761:8777-8796 | Msa1444590:intron | 20.0% |
| ! | AATGAAAATGAATGTGTTGT+TGG | + | tig0030761:6090-6109 | None:intergenic | 25.0% |
| ! | ATGGAATTGAAATTGGAATT+TGG | + | tig0030761:6153-6172 | None:intergenic | 25.0% |
| ! | GAAATAGCTTAAACATAACT+TGG | - | tig0030761:6799-6818 | Msa1444590:intron | 25.0% |
| ! | AATTTCTGTATTGTATTTGC+AGG | - | tig0030761:7178-7197 | Msa1444590:three_prime_UTR | 25.0% |
| ! | TATTGCACAATTGTATGTAT+AGG | + | tig0030761:7391-7410 | None:intergenic | 25.0% |
| ! | GTAATTATATTTGGCTGAAA+TGG | - | tig0030761:7893-7912 | Msa1444590:three_prime_UTR | 25.0% |
| !!! | CTTCTTTTAAGTTTTCTATC+TGG | - | tig0030761:7936-7955 | Msa1444590:intron | 25.0% |
| ! | CTAAGAAACTAACAATCAAA+TGG | + | tig0030761:8038-8057 | None:intergenic | 25.0% |
| !!! | TCTTTTTATAATTGGGTTGT+TGG | - | tig0030761:8501-8520 | Msa1444590:intron | 25.0% |
| ! | TAACTATAGGAGTTAAAAAG+GGG | - | tig0030761:8675-8694 | Msa1444590:intron | 25.0% |
| !! | TCAGCACAATTTTCTAATTA+TGG | - | tig0030761:8859-8878 | Msa1444590:three_prime_UTR | 25.0% |
| !! | CAGCACAATTTTCTAATTAT+GGG | - | tig0030761:8860-8879 | Msa1444590:three_prime_UTR | 25.0% |
| ! | ATACTGCATTTGATTGATAA+TGG | + | tig0030761:9068-9087 | None:intergenic | 25.0% |
| GAAATGATGAAACAACACTT+TGG | + | tig0030761:6054-6073 | None:intergenic | 30.0% | |
| ! | AATTGGAATTTGGTGGAAAT+TGG | + | tig0030761:6143-6162 | None:intergenic | 30.0% |
| GAATTGAAATTGGAATTTGG+TGG | + | tig0030761:6150-6169 | None:intergenic | 30.0% | |
| AGAATCGATGGAATTGAAAT+TGG | + | tig0030761:6160-6179 | None:intergenic | 30.0% | |
| ACGGTTTATCACACATTATA+TGG | + | tig0030761:6660-6679 | None:intergenic | 30.0% | |
| !! | ACATGTTCATACGTTGTTTT+CGG | - | tig0030761:6694-6713 | Msa1444590:intron | 30.0% |
| ! | ATTAAGTTGTTTACCCAAAC+AGG | - | tig0030761:6846-6865 | Msa1444590:intron | 30.0% |
| ! | TTAAGTTGTTTACCCAAACA+GGG | - | tig0030761:6847-6866 | Msa1444590:intron | 30.0% |
| ! | TATACAAAGTTGATCAAGTG+CGG | - | tig0030761:6897-6916 | Msa1444590:intron | 30.0% |
| ATGACTATACCAAGTTTAGA+CGG | - | tig0030761:6920-6939 | Msa1444590:three_prime_UTR | 30.0% | |
| ATTGTGCAATACTAATAGCA+CGG | - | tig0030761:7400-7419 | Msa1444590:intron | 30.0% | |
| ! | ATGCTGTTCTTGACTTTTAT+CGG | + | tig0030761:7476-7495 | None:intergenic | 30.0% |
| TATACCTTGCTCATAAACTT+CGG | - | tig0030761:7604-7623 | Msa1444590:intron | 30.0% | |
| CATGCATTTGCAAATTTATG+AGG | - | tig0030761:7708-7727 | Msa1444590:intron | 30.0% | |
| TCAGCAACATAATAAATGCA+AGG | - | tig0030761:7779-7798 | Msa1444590:intron | 30.0% | |
| CTTAAAAGAAGTCAACGTTA+TGG | + | tig0030761:7927-7946 | None:intergenic | 30.0% | |
| GAAGGAAATCTCATTATCTA+AGG | + | tig0030761:8098-8117 | None:intergenic | 30.0% | |
| ATAAAAAATAAAGGGTGGGA+GGG | + | tig0030761:8252-8271 | None:intergenic | 30.0% | |
| AATAAAAAATAAAGGGTGGG+AGG | + | tig0030761:8253-8272 | None:intergenic | 30.0% | |
| !! | AGTAACATTAGAGTTGATAG+AGG | + | tig0030761:8296-8315 | None:intergenic | 30.0% |
| TTCATGAGAATTCTCAATGT+TGG | + | tig0030761:8403-8422 | None:intergenic | 30.0% | |
| ! | CACACCTAAATTAATTTGGT+GGG | + | tig0030761:8546-8565 | None:intergenic | 30.0% |
| CACCAAATTAATTTAGGTGT+GGG | - | tig0030761:8545-8564 | Msa1444590:intron | 30.0% | |
| TTCCCACACCTAAATTAATT+TGG | + | tig0030761:8550-8569 | None:intergenic | 30.0% | |
| TAAGTTCAGTACAATATGTG+AGG | + | tig0030761:8622-8641 | None:intergenic | 30.0% | |
| CAATGGCTACATATTCTATT+AGG | + | tig0030761:8716-8735 | None:intergenic | 30.0% | |
| CTAATAGAATATGTAGCCAT+TGG | - | tig0030761:8714-8733 | Msa1444590:intron | 30.0% | |
| ACCATACTGAATTAAACCAA+TGG | + | tig0030761:8733-8752 | None:intergenic | 30.0% | |
| GTTTAATTCAGTATGGTTCT+CGG | - | tig0030761:8736-8755 | Msa1444590:intron | 30.0% | |
| ! | TTTTCTAATTATGGGAGTTG+AGG | - | tig0030761:8868-8887 | Msa1444590:three_prime_UTR | 30.0% |
| TGCTTACTTATGGTGATATT+TGG | - | tig0030761:9001-9020 | Msa1444590:three_prime_UTR | 30.0% | |
| !! | TTGTCTTCTCTTTGTTGTTT+AGG | - | tig0030761:9213-9232 | Msa1444590:CDS | 30.0% |
| !! | TGTCTTCTCTTTGTTGTTTA+GGG | - | tig0030761:9214-9233 | Msa1444590:CDS | 30.0% |
| !! | TGTTTGTGTTTGGGATTTTA+AGG | - | tig0030761:9256-9275 | Msa1444590:CDS | 30.0% |
| ACATAATTTACACAACAAGC+AGG | + | tig0030761:9293-9312 | None:intergenic | 30.0% | |
| !! | AGTTTTCAAGACTTAGAGTC+CGG | - | tig0030761:6215-6234 | Msa1444590:three_prime_UTR | 35.0% |
| TGAGAGATCACTCTTCATTA+TGG | - | tig0030761:6386-6405 | Msa1444590:intron | 35.0% | |
| ACTCTTCATTATGGCTGAAT+CGG | - | tig0030761:6395-6414 | Msa1444590:intron | 35.0% | |
| GAGACTTCATATTGGACAAT+TGG | - | tig0030761:6482-6501 | Msa1444590:intron | 35.0% | |
| TCATATTGGACAATTGGTGA+AGG | - | tig0030761:6488-6507 | Msa1444590:intron | 35.0% | |
| CATGTCACGAGTTATATTGA+CGG | + | tig0030761:6679-6698 | None:intergenic | 35.0% | |
| GTCCAATTGACAAAAAACAG+TGG | - | tig0030761:6869-6888 | Msa1444590:intron | 35.0% | |
| !!! | AGCCACTGTTTTTTGTCAAT+TGG | + | tig0030761:6874-6893 | None:intergenic | 35.0% |
| TAATGATCACCGTCTAAACT+TGG | + | tig0030761:6932-6951 | None:intergenic | 35.0% | |
| TTTAGCATCTGCTATCTTCT+TGG | + | tig0030761:7207-7226 | None:intergenic | 35.0% | |
| GAAGATAGCAGATGCTAAAT+TGG | - | tig0030761:7208-7227 | Msa1444590:three_prime_UTR | 35.0% | |
| TGAACTTCATGTGGAACAAA+AGG | + | tig0030761:7311-7330 | None:intergenic | 35.0% | |
| TTGTGCAATACTAATAGCAC+GGG | - | tig0030761:7401-7420 | Msa1444590:intron | 35.0% | |
| AGATACAAGAAATCACCTTC+TGG | + | tig0030761:7515-7534 | None:intergenic | 35.0% | |
| TTATCCGAAGTTTATGAGCA+AGG | + | tig0030761:7611-7630 | None:intergenic | 35.0% | |
| GCATTTGCAAATTTATGAGG+CGG | - | tig0030761:7711-7730 | Msa1444590:intron | 35.0% | |
| ATCAAAGAAAAGGACAGGAA+GGG | + | tig0030761:7746-7765 | None:intergenic | 35.0% | |
| TATCAAAGAAAAGGACAGGA+AGG | + | tig0030761:7747-7766 | None:intergenic | 35.0% | |
| ! | TCCTGTCCTTTTCTTTGATA+TGG | - | tig0030761:7747-7766 | Msa1444590:intron | 35.0% |
| ! | CCTGTCCTTTTCTTTGATAT+GGG | - | tig0030761:7748-7767 | Msa1444590:intron | 35.0% |
| ! | TCCTTTTCTTTGATATGGGT+TGG | - | tig0030761:7752-7771 | Msa1444590:intron | 35.0% |
| ACCAACCCATATCAAAGAAA+AGG | + | tig0030761:7756-7775 | None:intergenic | 35.0% | |
| ATCATTGAGGAAAGAGAACA+AGG | - | tig0030761:8127-8146 | Msa1444590:three_prime_UTR | 35.0% | |
| TAAAAAATAAAGGGTGGGAG+GGG | + | tig0030761:8251-8270 | None:intergenic | 35.0% | |
| ACAAAGATCAAGCTCATCTT+TGG | - | tig0030761:8467-8486 | Msa1444590:intron | 35.0% | |
| TCCTCCCACCAAATTAATTT+AGG | - | tig0030761:8539-8558 | Msa1444590:intron | 35.0% | |
| ! | ACCTAAATTAATTTGGTGGG+AGG | + | tig0030761:8543-8562 | None:intergenic | 35.0% |
| ! | CCACACCTAAATTAATTTGG+TGG | + | tig0030761:8547-8566 | None:intergenic | 35.0% |
| CCACCAAATTAATTTAGGTG+TGG | - | tig0030761:8544-8563 | Msa1444590:intron | 35.0% | |
| GGTTTCAGTTCACTAAACAA+TGG | + | tig0030761:8597-8616 | None:intergenic | 35.0% | |
| TTCAGTACAATATGTGAGGA+AGG | + | tig0030761:8618-8637 | None:intergenic | 35.0% | |
| !! | GCCATTGGTTTAATTCAGTA+TGG | - | tig0030761:8729-8748 | Msa1444590:intron | 35.0% |
| !! | ATGGAGAAAGGGATTTGTTT+TGG | - | tig0030761:8788-8807 | Msa1444590:intron | 35.0% |
| !! | TGGAGAAAGGGATTTGTTTT+GGG | - | tig0030761:8789-8808 | Msa1444590:intron | 35.0% |
| AGATCAGGTAAAACATCACT+TGG | + | tig0030761:9128-9147 | None:intergenic | 35.0% | |
| TACCTGATCTCATGAATAAC+TGG | - | tig0030761:9138-9157 | Msa1444590:CDS | 35.0% | |
| ACCTGATCTCATGAATAACT+GGG | - | tig0030761:9139-9158 | Msa1444590:CDS | 35.0% | |
| TCCTCTCTATGTTTGTGTTT+GGG | - | tig0030761:9247-9266 | Msa1444590:CDS | 35.0% | |
| GTTGCAAATACAGGTAAAGA+AGG | + | tig0030761:9350-9369 | None:intergenic | 35.0% | |
| !!! | CACTTTTGAGTTGCAAATAC+AGG | + | tig0030761:9359-9378 | None:intergenic | 35.0% |
| CTGTATTTGCAACTCAAAAG+TGG | - | tig0030761:9357-9376 | Msa1444590:five_prime_UTR | 35.0% | |
| !! | AATTGGAGGAAGTATTGGAG+TGG | + | tig0030761:6126-6145 | None:intergenic | 40.0% |
| ! | GTGGAAATTGGAGGAAGTAT+TGG | + | tig0030761:6131-6150 | None:intergenic | 40.0% |
| ! | TGGAATTTGGTGGAAATTGG+AGG | + | tig0030761:6140-6159 | None:intergenic | 40.0% |
| ! | GAGTTTCTAGAGAGAATCGA+TGG | + | tig0030761:6172-6191 | None:intergenic | 40.0% |
| ! | GTTAACGAGTCTCTGAAAAG+TGG | + | tig0030761:6321-6340 | None:intergenic | 40.0% |
| CAATATGAAGTCTCGTCTTG+TGG | + | tig0030761:6476-6495 | None:intergenic | 40.0% | |
| CACAAGACGAGACTTCATAT+TGG | - | tig0030761:6474-6493 | Msa1444590:intron | 40.0% | |
| ACAATTGGTGAAGGATACGT+CGG | - | tig0030761:6497-6516 | Msa1444590:intron | 40.0% | |
| TTGTCAATTGGACCCTGTTT+GGG | + | tig0030761:6862-6881 | None:intergenic | 40.0% | |
| TTTGTCAATTGGACCCTGTT+TGG | + | tig0030761:6863-6882 | None:intergenic | 40.0% | |
| ! | AGAACAGCATACCCTTCTTT+TGG | - | tig0030761:7486-7505 | Msa1444590:intron | 40.0% |
| CCTTCTGGATTCCAAAAGAA+GGG | + | tig0030761:7500-7519 | None:intergenic | 40.0% | |
| ACCTTCTGGATTCCAAAAGA+AGG | + | tig0030761:7501-7520 | None:intergenic | 40.0% | |
| CCCATATCAAAGAAAAGGAC+AGG | + | tig0030761:7751-7770 | None:intergenic | 40.0% | |
| GCATTATTCATTCTGCAGAC+AGG | - | tig0030761:8063-8082 | Msa1444590:three_prime_UTR | 40.0% | |
| TTATTCATTCTGCAGACAGG+AGG | - | tig0030761:8066-8085 | Msa1444590:three_prime_UTR | 40.0% | |
| CTCAATGATAGCTTCGTTGA+AGG | + | tig0030761:8116-8135 | None:intergenic | 40.0% | |
| CTTCAACGAAGCTATCATTG+AGG | - | tig0030761:8114-8133 | Msa1444590:three_prime_UTR | 40.0% | |
| ! | AACAAGTTGCGATTTTGCCT+GGG | + | tig0030761:8433-8452 | None:intergenic | 40.0% |
| !!! | GGAGAAAGGGATTTGTTTTG+GGG | - | tig0030761:8790-8809 | Msa1444590:intron | 40.0% |
| !!! | GAGAAAGGGATTTGTTTTGG+GGG | - | tig0030761:8791-8810 | Msa1444590:intron | 40.0% |
| !!! | AGAAAGGGATTTGTTTTGGG+GGG | - | tig0030761:8792-8811 | Msa1444590:intron | 40.0% |
| !! | GTTGTTTCCCCCTTTTATCT+AGG | - | tig0030761:8976-8995 | Msa1444590:three_prime_UTR | 40.0% |
| TAAGCACGCCTAGATAAAAG+GGG | + | tig0030761:8987-9006 | None:intergenic | 40.0% | |
| GTAAGCACGCCTAGATAAAA+GGG | + | tig0030761:8988-9007 | None:intergenic | 40.0% | |
| AGTAAGCACGCCTAGATAAA+AGG | + | tig0030761:8989-9008 | None:intergenic | 40.0% | |
| TATCTAGGCGTGCTTACTTA+TGG | - | tig0030761:8991-9010 | Msa1444590:three_prime_UTR | 40.0% | |
| ! | TATCAGCACGAGAGATTTTG+TGG | + | tig0030761:9099-9118 | None:intergenic | 40.0% |
| ACCCAGTTATTCATGAGATC+AGG | + | tig0030761:9143-9162 | None:intergenic | 40.0% | |
| !!! | GGTTTTGTCACTTTCTCATC+TGG | - | tig0030761:9160-9179 | Msa1444590:CDS | 40.0% |
| !! | CTTCTCTTTGTTGTTTAGGG+TGG | - | tig0030761:9217-9236 | Msa1444590:CDS | 40.0% |
| CTCCTCTCTATGTTTGTGTT+TGG | - | tig0030761:9246-9265 | Msa1444590:CDS | 40.0% | |
| TCCCAAACACAAACATAGAG+AGG | + | tig0030761:9251-9270 | None:intergenic | 40.0% | |
| CAAAAGTGGTATCTCGATCT+AGG | - | tig0030761:9371-9390 | Msa1444590:five_prime_UTR | 40.0% | |
| !! | GGTCTTGTTTGCCGTTGATT+TGG | + | tig0030761:6250-6269 | None:intergenic | 45.0% |
| ! | GAGTCTCTGAAAAGTGGAGA+CGG | + | tig0030761:6315-6334 | None:intergenic | 45.0% |
| CAGAGACTCGTTAACACTCT+CGG | - | tig0030761:6326-6345 | Msa1444590:three_prime_UTR | 45.0% | |
| TGATCTCTCACAGTTTCTCG+CGG | + | tig0030761:6376-6395 | None:intergenic | 45.0% | |
| AATAACATCGGTCAGTCACC+TGG | + | tig0030761:7339-7358 | None:intergenic | 45.0% | |
| AGCTATACAGGCAGTGAAGT+AGG | - | tig0030761:7442-7461 | Msa1444590:intron | 45.0% | |
| !!! | CCCTTCTTTTGGAATCCAGA+AGG | - | tig0030761:7497-7516 | Msa1444590:intron | 45.0% |
| CAAGAAATCCAGCAGCAGAT+AGG | - | tig0030761:8154-8173 | Msa1444590:three_prime_UTR | 45.0% | |
| TTACTTCACCTATCTGCTGC+TGG | + | tig0030761:8165-8184 | None:intergenic | 45.0% | |
| GCTGTACTTGTTCATGAGCA+AGG | - | tig0030761:8205-8224 | Msa1444590:intron | 45.0% | |
| CATGAGCAAGGAGCAATGAT+TGG | - | tig0030761:8217-8236 | Msa1444590:intron | 45.0% | |
| ! | GAACAAGTTGCGATTTTGCC+TGG | + | tig0030761:8434-8453 | None:intergenic | 45.0% |
| AAGCACGCCTAGATAAAAGG+GGG | + | tig0030761:8986-9005 | None:intergenic | 45.0% | |
| ! | TTCTCATCTGGTTTCGTGCA+CGG | - | tig0030761:9172-9191 | Msa1444590:CDS | 45.0% |
| !! | TATTTATATGTAATTATATT+TGG | - | tig0030761:7884-7903 | Msa1444590:three_prime_UTR | 5.0% |
| !! | AACAAAAAATAAAAAATAAA+GGG | + | tig0030761:8260-8279 | None:intergenic | 5.0% |
| !!! | ATAAATTTTCTTTTTATAAT+TGG | - | tig0030761:8493-8512 | Msa1444590:intron | 5.0% |
| !!! | TAAATTTTCTTTTTATAATT+GGG | - | tig0030761:8494-8513 | Msa1444590:intron | 5.0% |
| ATTGGAGTGGAAGCGAGGAA+TGG | + | tig0030761:6113-6132 | None:intergenic | 50.0% | |
| !! | GAAGTATTGGAGTGGAAGCG+AGG | + | tig0030761:6118-6137 | None:intergenic | 50.0% |
| TTCAAGACTTAGAGTCCGGC+CGG | - | tig0030761:6219-6238 | Msa1444590:three_prime_UTR | 50.0% | |
| !! | TGCCGTTGATTTGGTTTCGC+CGG | + | tig0030761:6241-6260 | None:intergenic | 50.0% |
| CAAACAAGACCCGACTCAAG+CGG | - | tig0030761:6259-6278 | Msa1444590:three_prime_UTR | 50.0% | |
| !! | GGTGTTGATCTGAAACACGC+CGG | + | tig0030761:6291-6310 | None:intergenic | 50.0% |
| ! | TCTCTGAAAAGTGGAGACGG+CGG | + | tig0030761:6312-6331 | None:intergenic | 50.0% |
| TCACAGTTTCTCGCGGAGTT+CGG | + | tig0030761:6369-6388 | None:intergenic | 50.0% | |
| CTGGATGGCTGAACTTCATG+TGG | + | tig0030761:7320-7339 | None:intergenic | 50.0% | |
| CACATGAAGTTCAGCCATCC+AGG | - | tig0030761:7318-7337 | Msa1444590:intron | 50.0% | |
| TCACTGCCTGTATAGCTGCA+GGG | + | tig0030761:7439-7458 | None:intergenic | 50.0% | |
| TTCACTGCCTGTATAGCTGC+AGG | + | tig0030761:7440-7459 | None:intergenic | 50.0% | |
| ! | ACGTGTGTTGTGTGTCGACG+TGG | - | tig0030761:5999-6018 | Msa1444590:three_prime_UTR | 55.0% |
| !! | GTTGATTTGGTTTCGCCGGC+CGG | + | tig0030761:6237-6256 | None:intergenic | 55.0% |
| GGCCGGCGAAACCAAATCAA+CGG | - | tig0030761:6236-6255 | Msa1444590:three_prime_UTR | 55.0% | |
| CACAGTTTCTCGCGGAGTTC+GGG | + | tig0030761:6368-6387 | None:intergenic | 55.0% | |
| ACAGCGTCTTGCAGCTGAGA+GGG | - | tig0030761:7271-7290 | Msa1444590:three_prime_UTR | 55.0% | |
| ACATCGGTCAGTCACCTGGA+TGG | + | tig0030761:7335-7354 | None:intergenic | 55.0% | |
| TTCTCATGAAGCCACTGCCC+AGG | - | tig0030761:8413-8432 | Msa1444590:intron | 55.0% | |
| ! | TTGCGATTTTGCCTGGGCAG+TGG | + | tig0030761:8427-8446 | None:intergenic | 55.0% |
| !!! | AGGGATTTGTTTTGGGGGGC+AGG | - | tig0030761:8796-8815 | Msa1444590:intron | 55.0% |
| !!! | GGGATTTGTTTTGGGGGGCA+GGG | - | tig0030761:8797-8816 | Msa1444590:intron | 55.0% |
| !!! | GGATTTGTTTTGGGGGGCAG+GGG | - | tig0030761:8798-8817 | Msa1444590:intron | 55.0% |
| ! | TCATCTGGTTTCGTGCACGG+CGG | - | tig0030761:9175-9194 | Msa1444590:CDS | 55.0% |
| ! | TGTGTCGACGTGGACGTACG+AGG | - | tig0030761:6009-6028 | Msa1444590:three_prime_UTR | 60.0% |
| TCGACGTGGACGTACGAGGA+AGG | - | tig0030761:6013-6032 | Msa1444590:three_prime_UTR | 60.0% | |
| CGGAAGCTACCGCTTGAGTC+GGG | + | tig0030761:6271-6290 | None:intergenic | 60.0% | |
| CCGGAAGCTACCGCTTGAGT+CGG | + | tig0030761:6272-6291 | None:intergenic | 60.0% | |
| CCGACTCAAGCGGTAGCTTC+CGG | - | tig0030761:6269-6288 | Msa1444590:three_prime_UTR | 60.0% | |
| GAGTTCGGGCGTGTCTTTGG+GGG | + | tig0030761:6354-6373 | None:intergenic | 60.0% | |
| GGAGTTCGGGCGTGTCTTTG+GGG | + | tig0030761:6355-6374 | None:intergenic | 60.0% | |
| CGGAGTTCGGGCGTGTCTTT+GGG | + | tig0030761:6356-6375 | None:intergenic | 60.0% | |
| CACAGCGTCTTGCAGCTGAG+AGG | - | tig0030761:7270-7289 | Msa1444590:three_prime_UTR | 60.0% | |
| TCTCCGCCCTGCAGCTATAC+AGG | - | tig0030761:7430-7449 | Msa1444590:intron | 60.0% | |
| CTGCCTGTATAGCTGCAGGG+CGG | + | tig0030761:7436-7455 | None:intergenic | 60.0% | |
| !! | GCAGGGGTGTGAGGTTTTGG+TGG | - | tig0030761:8814-8833 | Msa1444590:intron | 60.0% |
| ! | CATCTGGTTTCGTGCACGGC+GGG | - | tig0030761:9176-9195 | Msa1444590:CDS | 60.0% |
| ! | ATCTGGTTTCGTGCACGGCG+GGG | - | tig0030761:9177-9196 | Msa1444590:CDS | 60.0% |
| GCGGAGTTCGGGCGTGTCTT+TGG | + | tig0030761:6357-6376 | None:intergenic | 65.0% | |
| !! | TTTTGGGGGGCAGGGGTGTG+AGG | - | tig0030761:8805-8824 | Msa1444590:intron | 65.0% |
| !! | GGGGCAGGGGTGTGAGGTTT+TGG | - | tig0030761:8811-8830 | Msa1444590:intron | 65.0% |
| ! | TCTGGTTTCGTGCACGGCGG+GGG | - | tig0030761:9178-9197 | Msa1444590:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0030761 | gene | 5993 | 9399 | 5993 | ID=Msa1444590;Name=Msa1444590 |
| tig0030761 | mRNA | 5993 | 9399 | 5993 | ID=Msa1444590-mRNA-1;Parent=Msa1444590;Name=Msa1444590-mRNA-1;_AED=0.15;_eAED=0.15;_QI=44|1|1|1|1|1|6|1103|100 |
| tig0030761 | exon | 5993 | 6394 | 5993 | ID=Msa1444590-mRNA-1:exon:14573;Parent=Msa1444590-mRNA-1 |
| tig0030761 | exon | 6904 | 7004 | 6904 | ID=Msa1444590-mRNA-1:exon:14572;Parent=Msa1444590-mRNA-1 |
| tig0030761 | exon | 7154 | 7311 | 7154 | ID=Msa1444590-mRNA-1:exon:14571;Parent=Msa1444590-mRNA-1 |
| tig0030761 | exon | 7874 | 7948 | 7874 | ID=Msa1444590-mRNA-1:exon:14570;Parent=Msa1444590-mRNA-1 |
| tig0030761 | exon | 8053 | 8192 | 8053 | ID=Msa1444590-mRNA-1:exon:14569;Parent=Msa1444590-mRNA-1 |
| tig0030761 | exon | 8826 | 9399 | 8826 | ID=Msa1444590-mRNA-1:exon:14568;Parent=Msa1444590-mRNA-1 |
| tig0030761 | five_prime_UTR | 9356 | 9399 | 9356 | ID=Msa1444590-mRNA-1:five_prime_utr;Parent=Msa1444590-mRNA-1 |
| tig0030761 | CDS | 9053 | 9355 | 9053 | ID=Msa1444590-mRNA-1:cds;Parent=Msa1444590-mRNA-1 |
| tig0030761 | three_prime_UTR | 8826 | 9052 | 8826 | ID=Msa1444590-mRNA-1:three_prime_utr;Parent=Msa1444590-mRNA-1 |
| tig0030761 | three_prime_UTR | 8053 | 8192 | 8053 | ID=Msa1444590-mRNA-1:three_prime_utr;Parent=Msa1444590-mRNA-1 |
| tig0030761 | three_prime_UTR | 7874 | 7948 | 7874 | ID=Msa1444590-mRNA-1:three_prime_utr;Parent=Msa1444590-mRNA-1 |
| tig0030761 | three_prime_UTR | 7154 | 7311 | 7154 | ID=Msa1444590-mRNA-1:three_prime_utr;Parent=Msa1444590-mRNA-1 |
| tig0030761 | three_prime_UTR | 6904 | 7004 | 6904 | ID=Msa1444590-mRNA-1:three_prime_utr;Parent=Msa1444590-mRNA-1 |
| tig0030761 | three_prime_UTR | 5993 | 6394 | 5993 | ID=Msa1444590-mRNA-1:three_prime_utr;Parent=Msa1444590-mRNA-1 |
| Gene Sequence |
| Protein sequence |
