Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803020 | sp|P93654|SYP22_ARATH | 76.154 | 260 | 54 | 2 | 1 | 256 | 1 | 256 | 5.95e-139 | 394 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803020 | G7KCF3 | 97.761 | 268 | 6 | 0 | 1 | 268 | 1 | 268 | 0.0 | 529 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0803020 | Msa1125500 | -0.806283 | 8.867733e-50 | -8.615850e-47 |
| Msa0803020 | Msa1444590 | 0.830598 | 2.683583e-55 | -8.615850e-47 |
| Msa0490820 | Msa0803020 | -0.836413 | 9.498219e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803020 | MtrunA17_Chr5g0410841 | 97.761 | 268 | 6 | 0 | 1 | 268 | 1 | 268 | 0.0 | 529 |
| Msa0803020 | MtrunA17_Chr8g0366301 | 84.351 | 262 | 35 | 1 | 1 | 256 | 1 | 262 | 9.48e-150 | 419 |
| Msa0803020 | MtrunA17_Chr7g0252481 | 56.015 | 266 | 115 | 1 | 1 | 266 | 1 | 264 | 3.03e-98 | 288 |
| Msa0803020 | MtrunA17_Chr1g0192521 | 26.887 | 212 | 122 | 6 | 65 | 263 | 129 | 320 | 1.91e-12 | 66.2 |
| Msa0803020 | MtrunA17_Chr7g0269731 | 26.768 | 198 | 113 | 5 | 99 | 265 | 125 | 321 | 7.13e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0803020 | AT5G46860.1 | 76.154 | 260 | 54 | 2 | 1 | 256 | 1 | 256 | 6.05e-140 | 394 |
| Msa0803020 | AT4G17730.2 | 71.756 | 262 | 59 | 5 | 1 | 251 | 1 | 258 | 7.57e-113 | 325 |
| Msa0803020 | AT4G17730.1 | 74.390 | 246 | 52 | 3 | 1 | 236 | 1 | 245 | 1.01e-112 | 325 |
| Msa0803020 | AT5G16830.1 | 61.940 | 268 | 89 | 3 | 1 | 256 | 1 | 267 | 2.55e-112 | 325 |
| Msa0803020 | AT1G32270.2 | 54.132 | 242 | 90 | 5 | 26 | 252 | 106 | 341 | 6.60e-73 | 227 |
| Msa0803020 | AT1G32270.1 | 54.113 | 231 | 85 | 5 | 26 | 241 | 106 | 330 | 4.28e-67 | 214 |
Find 84 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTCTTCTCTTTGTTGTTT+AGG | 0.162534 | 5_3:+17997627 | Msa0803020:three_prime_UTR |
| TGTCTTCTCTTTGTTGTTTA+GGG | 0.177252 | 5_3:+17997628 | Msa0803020:three_prime_UTR |
| TGCTTACTTATGGTGATATT+TGG | 0.212646 | 5_3:+17997415 | Msa0803020:CDS |
| CGGAGTTCGGGCGTGTCTTT+GGG | 0.218987 | 5_3:-17994766 | None:intergenic |
| ATGGAATTGAAATTGGAATT+TGG | 0.237834 | 5_3:-17994563 | None:intergenic |
| TACCTGATCTCATGAATAAC+TGG | 0.250215 | 5_3:+17997552 | Msa0803020:three_prime_UTR |
| TTTAGCATCTGCTATCTTCT+TGG | 0.250765 | 5_3:-17995617 | None:intergenic |
| TCCTCTCTATGTTTGTGTTT+GGG | 0.253705 | 5_3:+17997661 | Msa0803020:three_prime_UTR |
| AATTGGAATTTGGTGGAAAT+TGG | 0.257077 | 5_3:-17994553 | None:intergenic |
| CTCCTCTCTATGTTTGTGTT+TGG | 0.263167 | 5_3:+17997660 | Msa0803020:three_prime_UTR |
| AGAACAGCATACCCTTCTTT+TGG | 0.265138 | 5_3:+17995899 | Msa0803020:CDS |
| AGAATCGATGGAATTGAAAT+TGG | 0.269066 | 5_3:-17994570 | None:intergenic |
| TATCTAGGCGTGCTTACTTA+TGG | 0.312349 | 5_3:+17997405 | Msa0803020:intron |
| TCACAGTTTCTCGCGGAGTT+CGG | 0.312554 | 5_3:-17994779 | None:intergenic |
| GAAGATAGCAGATGCTAAAT+TGG | 0.316353 | 5_3:+17995621 | Msa0803020:CDS |
| CACAGTTTCTCGCGGAGTTC+GGG | 0.319462 | 5_3:-17994778 | None:intergenic |
| ATACTGCATTTGATTGATAA+TGG | 0.331585 | 5_3:-17997479 | None:intergenic |
| GAAGGAAATCTCATTATCTA+AGG | 0.366910 | 5_3:-17996508 | None:intergenic |
| GGTCTTGTTTGCCGTTGATT+TGG | 0.369827 | 5_3:-17994660 | None:intergenic |
| GTGGAAATTGGAGGAAGTAT+TGG | 0.373888 | 5_3:-17994541 | None:intergenic |
| CTCAATGATAGCTTCGTTGA+AGG | 0.380708 | 5_3:-17996526 | None:intergenic |
| TTACTTCACCTATCTGCTGC+TGG | 0.383436 | 5_3:-17996575 | None:intergenic |
| CATCTGGTTTCGTGCACGGC+GGG | 0.394456 | 5_3:+17997590 | Msa0803020:three_prime_UTR |
| ACAAAGATCAAGCTCATCTT+TGG | 0.398928 | 5_3:+17996881 | Msa0803020:CDS |
| GAGACTTCATATTGGACAAT+TGG | 0.402688 | 5_3:+17994895 | Msa0803020:CDS |
| CAAAAGTGGTATCTCGATCT+AGG | 0.415172 | 5_3:+17997785 | Msa0803020:three_prime_UTR |
| TCTCCGCCCTGCAGCTATAC+AGG | 0.431818 | 5_3:+17995843 | Msa0803020:intron |
| GTTGATTTGGTTTCGCCGGC+CGG | 0.434566 | 5_3:-17994647 | None:intergenic |
| CACATGAAGTTCAGCCATCC+AGG | 0.452358 | 5_3:+17995731 | Msa0803020:CDS |
| TCTGGTTTCGTGCACGGCGG+GGG | 0.452388 | 5_3:+17997592 | Msa0803020:three_prime_UTR |
| AATGAAAATGAATGTGTTGT+TGG | 0.453423 | 5_3:-17994500 | None:intergenic |
| CAAGAAATCCAGCAGCAGAT+AGG | 0.473920 | 5_3:+17996567 | Msa0803020:CDS |
| TTCTCATCTGGTTTCGTGCA+CGG | 0.474599 | 5_3:+17997586 | Msa0803020:three_prime_UTR |
| ACCCAGTTATTCATGAGATC+AGG | 0.475347 | 5_3:-17997554 | None:intergenic |
| TGAACTTCATGTGGAACAAA+AGG | 0.477693 | 5_3:-17995721 | None:intergenic |
| CCGACTCAAGCGGTAGCTTC+CGG | 0.478496 | 5_3:+17994682 | Msa0803020:CDS |
| CATGAGCAAGGAGCAATGAT+TGG | 0.486298 | 5_3:+17996630 | Msa0803020:CDS |
| CTTCTCTTTGTTGTTTAGGG+TGG | 0.487751 | 5_3:+17997631 | Msa0803020:three_prime_UTR |
| TTCATGAGAATTCTCAATGT+TGG | 0.493350 | 5_3:-17996814 | None:intergenic |
| ACCTTCTGGATTCCAAAAGA+AGG | 0.493712 | 5_3:-17995911 | None:intergenic |
| GAAATGATGAAACAACACTT+TGG | 0.494490 | 5_3:-17994464 | None:intergenic |
| TGCCGTTGATTTGGTTTCGC+CGG | 0.496080 | 5_3:-17994651 | None:intergenic |
| CTGTATTTGCAACTCAAAAG+TGG | 0.498490 | 5_3:+17997771 | Msa0803020:three_prime_UTR |
| CAGAGACTCGTTAACACTCT+CGG | 0.506952 | 5_3:+17994739 | Msa0803020:CDS |
| ATCTGGTTTCGTGCACGGCG+GGG | 0.506953 | 5_3:+17997591 | Msa0803020:three_prime_UTR |
| CACAAGACGAGACTTCATAT+TGG | 0.509468 | 5_3:+17994887 | Msa0803020:CDS |
| TGGAATTTGGTGGAAATTGG+AGG | 0.513543 | 5_3:-17994550 | None:intergenic |
| GGAGTTCGGGCGTGTCTTTG+GGG | 0.514990 | 5_3:-17994765 | None:intergenic |
| ATTGGAGTGGAAGCGAGGAA+TGG | 0.516640 | 5_3:-17994523 | None:intergenic |
| TTCTCATGAAGCCACTGCCC+AGG | 0.520606 | 5_3:+17996827 | Msa0803020:CDS |
| CCGGAAGCTACCGCTTGAGT+CGG | 0.529539 | 5_3:-17994682 | None:intergenic |
| GTTGCAAATACAGGTAAAGA+AGG | 0.529918 | 5_3:-17997761 | None:intergenic |
| ACAGCGTCTTGCAGCTGAGA+GGG | 0.536746 | 5_3:+17995684 | Msa0803020:CDS |
| GAAGTATTGGAGTGGAAGCG+AGG | 0.538080 | 5_3:-17994528 | None:intergenic |
| GTTAACGAGTCTCTGAAAAG+TGG | 0.541432 | 5_3:-17994731 | None:intergenic |
| GCTGTACTTGTTCATGAGCA+AGG | 0.550972 | 5_3:+17996618 | Msa0803020:CDS |
| GAATTGAAATTGGAATTTGG+TGG | 0.558139 | 5_3:-17994560 | None:intergenic |
| ACCTGATCTCATGAATAACT+GGG | 0.563365 | 5_3:+17997553 | Msa0803020:three_prime_UTR |
| CCTTCTGGATTCCAAAAGAA+GGG | 0.568913 | 5_3:-17995910 | None:intergenic |
| CTTCAACGAAGCTATCATTG+AGG | 0.569106 | 5_3:+17996527 | Msa0803020:CDS |
| TTCAAGACTTAGAGTCCGGC+CGG | 0.574901 | 5_3:+17994632 | Msa0803020:CDS |
| GAGTTCGGGCGTGTCTTTGG+GGG | 0.575373 | 5_3:-17994764 | None:intergenic |
| CAATATGAAGTCTCGTCTTG+TGG | 0.580440 | 5_3:-17994886 | None:intergenic |
| GGCCGGCGAAACCAAATCAA+CGG | 0.582106 | 5_3:+17994649 | Msa0803020:CDS |
| CTGGATGGCTGAACTTCATG+TGG | 0.589529 | 5_3:-17995730 | None:intergenic |
| AGATCAGGTAAAACATCACT+TGG | 0.591366 | 5_3:-17997539 | None:intergenic |
| AGCTATACAGGCAGTGAAGT+AGG | 0.592494 | 5_3:+17995855 | Msa0803020:intron |
| ATCATTGAGGAAAGAGAACA+AGG | 0.597740 | 5_3:+17996540 | Msa0803020:CDS |
| GAGTTTCTAGAGAGAATCGA+TGG | 0.598098 | 5_3:-17994582 | None:intergenic |
| ACATAATTTACACAACAAGC+AGG | 0.602505 | 5_3:-17997704 | None:intergenic |
| CACAGCGTCTTGCAGCTGAG+AGG | 0.606915 | 5_3:+17995683 | Msa0803020:CDS |
| TCATATTGGACAATTGGTGA+AGG | 0.616859 | 5_3:+17994901 | Msa0803020:CDS |
| TCCCAAACACAAACATAGAG+AGG | 0.619849 | 5_3:-17997662 | None:intergenic |
| AATTGGAGGAAGTATTGGAG+TGG | 0.624685 | 5_3:-17994536 | None:intergenic |
| TCATCTGGTTTCGTGCACGG+CGG | 0.625030 | 5_3:+17997589 | Msa0803020:three_prime_UTR |
| TCGACGTGGACGTACGAGGA+AGG | 0.629648 | 5_3:+17994426 | Msa0803020:five_prime_UTR |
| TTATTCATTCTGCAGACAGG+AGG | 0.640635 | 5_3:+17996479 | Msa0803020:intron |
| ACGTGTGTTGTGTGTCGACG+TGG | 0.644069 | 5_3:+17994412 | Msa0803020:five_prime_UTR |
| GAGTCTCTGAAAAGTGGAGA+CGG | 0.652024 | 5_3:-17994725 | None:intergenic |
| TGATCTCTCACAGTTTCTCG+CGG | 0.652360 | 5_3:-17994786 | None:intergenic |
| CAAACAAGACCCGACTCAAG+CGG | 0.664630 | 5_3:+17994672 | Msa0803020:CDS |
| ACAATTGGTGAAGGATACGT+CGG | 0.684662 | 5_3:+17994910 | Msa0803020:CDS |
| GGTGTTGATCTGAAACACGC+CGG | 0.724240 | 5_3:-17994701 | None:intergenic |
| TCTCTGAAAAGTGGAGACGG+CGG | 0.749722 | 5_3:-17994722 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAAATAAGTTATAT+TGG | - | chr5_3:17995185-17995204 | None:intergenic | 10.0% |
| !! | TTACATATAAATAATACAAT+AGG | - | chr5_3:17996290-17996309 | None:intergenic | 10.0% |
| !! | CAACAAAAAATAAAAAATAA+AGG | - | chr5_3:17996674-17996693 | None:intergenic | 10.0% |
| !! | TTATTAACTATATATTATGT+AGG | - | chr5_3:17997072-17997091 | None:intergenic | 10.0% |
| !! | AATATATAGTTAATAACTAT+AGG | + | chr5_3:17997076-17997095 | Msa0803020:intron | 10.0% |
| !! | TCAAATTAATCAAAGTTTAA+TGG | + | chr5_3:17995032-17995051 | Msa0803020:intron | 15.0% |
| !! | TTTAATTGATCATAATGAAT+CGG | + | chr5_3:17995391-17995410 | Msa0803020:intron | 15.0% |
| !! | TATCACATCATATATTATAT+TGG | - | chr5_3:17996060-17996079 | None:intergenic | 15.0% |
| !! | AAAAATAAAAAATAAAGGGT+GGG | - | chr5_3:17996669-17996688 | None:intergenic | 15.0% |
| !! | AAAAAATAAAAAATAAAGGG+TGG | - | chr5_3:17996670-17996689 | None:intergenic | 15.0% |
| !!! | CTTTAAAAGATAAAAGAAAA+AGG | - | chr5_3:17997325-17997344 | None:intergenic | 15.0% |
| !!! | TTCGATTTTAAGATATTGAT+TGG | + | chr5_3:17994847-17994866 | Msa0803020:intron | 20.0% |
| !! | TTAATTGATCATAATGAATC+GGG | + | chr5_3:17995392-17995411 | Msa0803020:intron | 20.0% |
| !! | AATAAACAACTAACAAAACA+TGG | - | chr5_3:17995508-17995527 | None:intergenic | 20.0% |
| !! | ACATTAAACTCTAATAACAT+CGG | - | chr5_3:17995764-17995783 | None:intergenic | 20.0% |
| !!! | AACATCAATTATTTCTCAAA+AGG | + | chr5_3:17996247-17996266 | Msa0803020:intron | 20.0% |
| !!! | TCATCAAATTTAATTTCATG+TGG | - | chr5_3:17996405-17996424 | None:intergenic | 20.0% |
| !!! | TTTCATTTTGTAGATGATAT+TGG | + | chr5_3:17996789-17996808 | Msa0803020:intron | 20.0% |
| !!! | TTCATTTTGTAGATGATATT+GGG | + | chr5_3:17996790-17996809 | Msa0803020:intron | 20.0% |
| !! | AATAACTATAGGAGTTAAAA+AGG | + | chr5_3:17997087-17997106 | Msa0803020:intron | 20.0% |
| !! | ATAACTATAGGAGTTAAAAA+GGG | + | chr5_3:17997088-17997107 | Msa0803020:intron | 20.0% |
| !! | GCATTTCATTTCTATTTATA+TGG | + | chr5_3:17997183-17997202 | Msa0803020:intron | 20.0% |
| !! | ATTTCTATTTATATGGAGAA+AGG | + | chr5_3:17997190-17997209 | Msa0803020:intron | 20.0% |
| !! | TTTCTATTTATATGGAGAAA+GGG | + | chr5_3:17997191-17997210 | Msa0803020:intron | 20.0% |
| ! | AATGAAAATGAATGTGTTGT+TGG | - | chr5_3:17994503-17994522 | None:intergenic | 25.0% |
| ! | ATGGAATTGAAATTGGAATT+TGG | - | chr5_3:17994566-17994585 | None:intergenic | 25.0% |
| ! | GAAATAGCTTAAACATAACT+TGG | + | chr5_3:17995212-17995231 | Msa0803020:intron | 25.0% |
| ! | AATTTCTGTATTGTATTTGC+AGG | + | chr5_3:17995591-17995610 | Msa0803020:intron | 25.0% |
| ! | TATTGCACAATTGTATGTAT+AGG | - | chr5_3:17995804-17995823 | None:intergenic | 25.0% |
| ! | GTAATTATATTTGGCTGAAA+TGG | + | chr5_3:17996306-17996325 | Msa0803020:intron | 25.0% |
| !!! | CTTCTTTTAAGTTTTCTATC+TGG | + | chr5_3:17996349-17996368 | Msa0803020:intron | 25.0% |
| ! | CTAAGAAACTAACAATCAAA+TGG | - | chr5_3:17996451-17996470 | None:intergenic | 25.0% |
| !!! | TCTTTTTATAATTGGGTTGT+TGG | + | chr5_3:17996915-17996934 | Msa0803020:intron | 25.0% |
| ! | TAACTATAGGAGTTAAAAAG+GGG | + | chr5_3:17997089-17997108 | Msa0803020:intron | 25.0% |
| !! | TCAGCACAATTTTCTAATTA+TGG | + | chr5_3:17997273-17997292 | Msa0803020:intron | 25.0% |
| !! | CAGCACAATTTTCTAATTAT+GGG | + | chr5_3:17997274-17997293 | Msa0803020:intron | 25.0% |
| ! | ATACTGCATTTGATTGATAA+TGG | - | chr5_3:17997482-17997501 | None:intergenic | 25.0% |
| GAAATGATGAAACAACACTT+TGG | - | chr5_3:17994467-17994486 | None:intergenic | 30.0% | |
| ! | AATTGGAATTTGGTGGAAAT+TGG | - | chr5_3:17994556-17994575 | None:intergenic | 30.0% |
| GAATTGAAATTGGAATTTGG+TGG | - | chr5_3:17994563-17994582 | None:intergenic | 30.0% | |
| AGAATCGATGGAATTGAAAT+TGG | - | chr5_3:17994573-17994592 | None:intergenic | 30.0% | |
| ACGGTTTATCACACATTATA+TGG | - | chr5_3:17995073-17995092 | None:intergenic | 30.0% | |
| !! | ACATGTTCATACGTTGTTTT+CGG | + | chr5_3:17995107-17995126 | Msa0803020:intron | 30.0% |
| ! | ATTAAGTTGTTTACCCAAAC+AGG | + | chr5_3:17995259-17995278 | Msa0803020:intron | 30.0% |
| ! | TTAAGTTGTTTACCCAAACA+GGG | + | chr5_3:17995260-17995279 | Msa0803020:intron | 30.0% |
| ! | TATACAAAGTTGATCAAGTG+CGG | + | chr5_3:17995310-17995329 | Msa0803020:intron | 30.0% |
| ATGACTATACCAAGTTTAGA+CGG | + | chr5_3:17995333-17995352 | Msa0803020:intron | 30.0% | |
| ATTGTGCAATACTAATAGCA+CGG | + | chr5_3:17995813-17995832 | Msa0803020:intron | 30.0% | |
| ! | ATGCTGTTCTTGACTTTTAT+CGG | - | chr5_3:17995889-17995908 | None:intergenic | 30.0% |
| TATACCTTGCTCATAAACTT+CGG | + | chr5_3:17996017-17996036 | Msa0803020:intron | 30.0% | |
| CATGCATTTGCAAATTTATG+AGG | + | chr5_3:17996121-17996140 | Msa0803020:intron | 30.0% | |
| TCAGCAACATAATAAATGCA+AGG | + | chr5_3:17996192-17996211 | Msa0803020:intron | 30.0% | |
| CTTAAAAGAAGTCAACGTTA+TGG | - | chr5_3:17996340-17996359 | None:intergenic | 30.0% | |
| GAAGGAAATCTCATTATCTA+AGG | - | chr5_3:17996511-17996530 | None:intergenic | 30.0% | |
| ATAAAAAATAAAGGGTGGGA+GGG | - | chr5_3:17996665-17996684 | None:intergenic | 30.0% | |
| AATAAAAAATAAAGGGTGGG+AGG | - | chr5_3:17996666-17996685 | None:intergenic | 30.0% | |
| !! | AGTAACATTAGAGTTGATAG+AGG | - | chr5_3:17996709-17996728 | None:intergenic | 30.0% |
| TTCATGAGAATTCTCAATGT+TGG | - | chr5_3:17996817-17996836 | None:intergenic | 30.0% | |
| ! | CACACCTAAATTAATTTGGT+GGG | - | chr5_3:17996960-17996979 | None:intergenic | 30.0% |
| CACCAAATTAATTTAGGTGT+GGG | + | chr5_3:17996959-17996978 | Msa0803020:intron | 30.0% | |
| TTCCCACACCTAAATTAATT+TGG | - | chr5_3:17996964-17996983 | None:intergenic | 30.0% | |
| TAAGTTCAGTACAATATGTG+AGG | - | chr5_3:17997036-17997055 | None:intergenic | 30.0% | |
| CAATGGCTACATATTCTATT+AGG | - | chr5_3:17997130-17997149 | None:intergenic | 30.0% | |
| CTAATAGAATATGTAGCCAT+TGG | + | chr5_3:17997128-17997147 | Msa0803020:intron | 30.0% | |
| ACCATACTGAATTAAACCAA+TGG | - | chr5_3:17997147-17997166 | None:intergenic | 30.0% | |
| GTTTAATTCAGTATGGTTCT+CGG | + | chr5_3:17997150-17997169 | Msa0803020:intron | 30.0% | |
| ! | TTTTCTAATTATGGGAGTTG+AGG | + | chr5_3:17997282-17997301 | Msa0803020:intron | 30.0% |
| TGCTTACTTATGGTGATATT+TGG | + | chr5_3:17997415-17997434 | Msa0803020:CDS | 30.0% | |
| !! | TTGTCTTCTCTTTGTTGTTT+AGG | + | chr5_3:17997627-17997646 | Msa0803020:three_prime_UTR | 30.0% |
| !! | TGTCTTCTCTTTGTTGTTTA+GGG | + | chr5_3:17997628-17997647 | Msa0803020:three_prime_UTR | 30.0% |
| !! | TGTTTGTGTTTGGGATTTTA+AGG | + | chr5_3:17997670-17997689 | Msa0803020:three_prime_UTR | 30.0% |
| ACATAATTTACACAACAAGC+AGG | - | chr5_3:17997707-17997726 | None:intergenic | 30.0% | |
| !! | AGTTTTCAAGACTTAGAGTC+CGG | + | chr5_3:17994628-17994647 | Msa0803020:CDS | 35.0% |
| TGAGAGATCACTCTTCATTA+TGG | + | chr5_3:17994799-17994818 | Msa0803020:intron | 35.0% | |
| ACTCTTCATTATGGCTGAAT+CGG | + | chr5_3:17994808-17994827 | Msa0803020:intron | 35.0% | |
| GAGACTTCATATTGGACAAT+TGG | + | chr5_3:17994895-17994914 | Msa0803020:CDS | 35.0% | |
| TCATATTGGACAATTGGTGA+AGG | + | chr5_3:17994901-17994920 | Msa0803020:CDS | 35.0% | |
| CATGTCACGAGTTATATTGA+CGG | - | chr5_3:17995092-17995111 | None:intergenic | 35.0% | |
| GTCCAATTGACAAAAAACAG+TGG | + | chr5_3:17995282-17995301 | Msa0803020:intron | 35.0% | |
| !!! | AGCCACTGTTTTTTGTCAAT+TGG | - | chr5_3:17995287-17995306 | None:intergenic | 35.0% |
| TAATGATCACCGTCTAAACT+TGG | - | chr5_3:17995345-17995364 | None:intergenic | 35.0% | |
| TTTAGCATCTGCTATCTTCT+TGG | - | chr5_3:17995620-17995639 | None:intergenic | 35.0% | |
| GAAGATAGCAGATGCTAAAT+TGG | + | chr5_3:17995621-17995640 | Msa0803020:CDS | 35.0% | |
| TGAACTTCATGTGGAACAAA+AGG | - | chr5_3:17995724-17995743 | None:intergenic | 35.0% | |
| TTGTGCAATACTAATAGCAC+GGG | + | chr5_3:17995814-17995833 | Msa0803020:intron | 35.0% | |
| AGATACAAGAAATCACCTTC+TGG | - | chr5_3:17995928-17995947 | None:intergenic | 35.0% | |
| TTATCCGAAGTTTATGAGCA+AGG | - | chr5_3:17996024-17996043 | None:intergenic | 35.0% | |
| GCATTTGCAAATTTATGAGG+CGG | + | chr5_3:17996124-17996143 | Msa0803020:intron | 35.0% | |
| ATCAAAGAAAAGGACAGGAA+GGG | - | chr5_3:17996159-17996178 | None:intergenic | 35.0% | |
| TATCAAAGAAAAGGACAGGA+AGG | - | chr5_3:17996160-17996179 | None:intergenic | 35.0% | |
| ! | TCCTGTCCTTTTCTTTGATA+TGG | + | chr5_3:17996160-17996179 | Msa0803020:intron | 35.0% |
| ! | CCTGTCCTTTTCTTTGATAT+GGG | + | chr5_3:17996161-17996180 | Msa0803020:intron | 35.0% |
| ! | TCCTTTTCTTTGATATGGGT+TGG | + | chr5_3:17996165-17996184 | Msa0803020:intron | 35.0% |
| ACCAACCCATATCAAAGAAA+AGG | - | chr5_3:17996169-17996188 | None:intergenic | 35.0% | |
| ATCATTGAGGAAAGAGAACA+AGG | + | chr5_3:17996540-17996559 | Msa0803020:CDS | 35.0% | |
| TAAAAAATAAAGGGTGGGAG+GGG | - | chr5_3:17996664-17996683 | None:intergenic | 35.0% | |
| ACAAAGATCAAGCTCATCTT+TGG | + | chr5_3:17996881-17996900 | Msa0803020:CDS | 35.0% | |
| TCCTCCCACCAAATTAATTT+AGG | + | chr5_3:17996953-17996972 | Msa0803020:intron | 35.0% | |
| ! | ACCTAAATTAATTTGGTGGG+AGG | - | chr5_3:17996957-17996976 | None:intergenic | 35.0% |
| ! | CCACACCTAAATTAATTTGG+TGG | - | chr5_3:17996961-17996980 | None:intergenic | 35.0% |
| CCACCAAATTAATTTAGGTG+TGG | + | chr5_3:17996958-17996977 | Msa0803020:intron | 35.0% | |
| GGTTTCAGTTCACTAAACAA+TGG | - | chr5_3:17997011-17997030 | None:intergenic | 35.0% | |
| TTCAGTACAATATGTGAGGA+AGG | - | chr5_3:17997032-17997051 | None:intergenic | 35.0% | |
| !! | GCCATTGGTTTAATTCAGTA+TGG | + | chr5_3:17997143-17997162 | Msa0803020:intron | 35.0% |
| !! | ATGGAGAAAGGGATTTGTTT+TGG | + | chr5_3:17997202-17997221 | Msa0803020:intron | 35.0% |
| !! | TGGAGAAAGGGATTTGTTTT+GGG | + | chr5_3:17997203-17997222 | Msa0803020:intron | 35.0% |
| AGATCAGGTAAAACATCACT+TGG | - | chr5_3:17997542-17997561 | None:intergenic | 35.0% | |
| TACCTGATCTCATGAATAAC+TGG | + | chr5_3:17997552-17997571 | Msa0803020:three_prime_UTR | 35.0% | |
| ACCTGATCTCATGAATAACT+GGG | + | chr5_3:17997553-17997572 | Msa0803020:three_prime_UTR | 35.0% | |
| TCCTCTCTATGTTTGTGTTT+GGG | + | chr5_3:17997661-17997680 | Msa0803020:three_prime_UTR | 35.0% | |
| GTTGCAAATACAGGTAAAGA+AGG | - | chr5_3:17997764-17997783 | None:intergenic | 35.0% | |
| !!! | CACTTTTGAGTTGCAAATAC+AGG | - | chr5_3:17997773-17997792 | None:intergenic | 35.0% |
| CTGTATTTGCAACTCAAAAG+TGG | + | chr5_3:17997771-17997790 | Msa0803020:three_prime_UTR | 35.0% | |
| !! | AATTGGAGGAAGTATTGGAG+TGG | - | chr5_3:17994539-17994558 | None:intergenic | 40.0% |
| ! | GTGGAAATTGGAGGAAGTAT+TGG | - | chr5_3:17994544-17994563 | None:intergenic | 40.0% |
| ! | TGGAATTTGGTGGAAATTGG+AGG | - | chr5_3:17994553-17994572 | None:intergenic | 40.0% |
| ! | GAGTTTCTAGAGAGAATCGA+TGG | - | chr5_3:17994585-17994604 | None:intergenic | 40.0% |
| ! | GTTAACGAGTCTCTGAAAAG+TGG | - | chr5_3:17994734-17994753 | None:intergenic | 40.0% |
| CAATATGAAGTCTCGTCTTG+TGG | - | chr5_3:17994889-17994908 | None:intergenic | 40.0% | |
| CACAAGACGAGACTTCATAT+TGG | + | chr5_3:17994887-17994906 | Msa0803020:CDS | 40.0% | |
| ACAATTGGTGAAGGATACGT+CGG | + | chr5_3:17994910-17994929 | Msa0803020:CDS | 40.0% | |
| TTGTCAATTGGACCCTGTTT+GGG | - | chr5_3:17995275-17995294 | None:intergenic | 40.0% | |
| TTTGTCAATTGGACCCTGTT+TGG | - | chr5_3:17995276-17995295 | None:intergenic | 40.0% | |
| ! | AGAACAGCATACCCTTCTTT+TGG | + | chr5_3:17995899-17995918 | Msa0803020:CDS | 40.0% |
| CCTTCTGGATTCCAAAAGAA+GGG | - | chr5_3:17995913-17995932 | None:intergenic | 40.0% | |
| ACCTTCTGGATTCCAAAAGA+AGG | - | chr5_3:17995914-17995933 | None:intergenic | 40.0% | |
| CCCATATCAAAGAAAAGGAC+AGG | - | chr5_3:17996164-17996183 | None:intergenic | 40.0% | |
| GCATTATTCATTCTGCAGAC+AGG | + | chr5_3:17996476-17996495 | Msa0803020:intron | 40.0% | |
| TTATTCATTCTGCAGACAGG+AGG | + | chr5_3:17996479-17996498 | Msa0803020:intron | 40.0% | |
| CTCAATGATAGCTTCGTTGA+AGG | - | chr5_3:17996529-17996548 | None:intergenic | 40.0% | |
| CTTCAACGAAGCTATCATTG+AGG | + | chr5_3:17996527-17996546 | Msa0803020:CDS | 40.0% | |
| ! | AACAAGTTGCGATTTTGCCT+GGG | - | chr5_3:17996847-17996866 | None:intergenic | 40.0% |
| !!! | GGAGAAAGGGATTTGTTTTG+GGG | + | chr5_3:17997204-17997223 | Msa0803020:intron | 40.0% |
| !!! | GAGAAAGGGATTTGTTTTGG+GGG | + | chr5_3:17997205-17997224 | Msa0803020:intron | 40.0% |
| !!! | AGAAAGGGATTTGTTTTGGG+GGG | + | chr5_3:17997206-17997225 | Msa0803020:intron | 40.0% |
| !! | GTTGTTTCCCCCTTTTATCT+AGG | + | chr5_3:17997390-17997409 | Msa0803020:intron | 40.0% |
| TAAGCACGCCTAGATAAAAG+GGG | - | chr5_3:17997401-17997420 | None:intergenic | 40.0% | |
| GTAAGCACGCCTAGATAAAA+GGG | - | chr5_3:17997402-17997421 | None:intergenic | 40.0% | |
| AGTAAGCACGCCTAGATAAA+AGG | - | chr5_3:17997403-17997422 | None:intergenic | 40.0% | |
| TATCTAGGCGTGCTTACTTA+TGG | + | chr5_3:17997405-17997424 | Msa0803020:intron | 40.0% | |
| ! | TATCAGCACGAGAGATTTTG+TGG | - | chr5_3:17997513-17997532 | None:intergenic | 40.0% |
| ACCCAGTTATTCATGAGATC+AGG | - | chr5_3:17997557-17997576 | None:intergenic | 40.0% | |
| !!! | GGTTTTGTCACTTTCTCATC+TGG | + | chr5_3:17997574-17997593 | Msa0803020:three_prime_UTR | 40.0% |
| !! | CTTCTCTTTGTTGTTTAGGG+TGG | + | chr5_3:17997631-17997650 | Msa0803020:three_prime_UTR | 40.0% |
| CTCCTCTCTATGTTTGTGTT+TGG | + | chr5_3:17997660-17997679 | Msa0803020:three_prime_UTR | 40.0% | |
| TCCCAAACACAAACATAGAG+AGG | - | chr5_3:17997665-17997684 | None:intergenic | 40.0% | |
| CAAAAGTGGTATCTCGATCT+AGG | + | chr5_3:17997785-17997804 | Msa0803020:three_prime_UTR | 40.0% | |
| !! | GGTCTTGTTTGCCGTTGATT+TGG | - | chr5_3:17994663-17994682 | None:intergenic | 45.0% |
| ! | GAGTCTCTGAAAAGTGGAGA+CGG | - | chr5_3:17994728-17994747 | None:intergenic | 45.0% |
| CAGAGACTCGTTAACACTCT+CGG | + | chr5_3:17994739-17994758 | Msa0803020:CDS | 45.0% | |
| TGATCTCTCACAGTTTCTCG+CGG | - | chr5_3:17994789-17994808 | None:intergenic | 45.0% | |
| AATAACATCGGTCAGTCACC+TGG | - | chr5_3:17995752-17995771 | None:intergenic | 45.0% | |
| AGCTATACAGGCAGTGAAGT+AGG | + | chr5_3:17995855-17995874 | Msa0803020:intron | 45.0% | |
| !!! | CCCTTCTTTTGGAATCCAGA+AGG | + | chr5_3:17995910-17995929 | Msa0803020:CDS | 45.0% |
| CAAGAAATCCAGCAGCAGAT+AGG | + | chr5_3:17996567-17996586 | Msa0803020:CDS | 45.0% | |
| TTACTTCACCTATCTGCTGC+TGG | - | chr5_3:17996578-17996597 | None:intergenic | 45.0% | |
| GCTGTACTTGTTCATGAGCA+AGG | + | chr5_3:17996618-17996637 | Msa0803020:CDS | 45.0% | |
| CATGAGCAAGGAGCAATGAT+TGG | + | chr5_3:17996630-17996649 | Msa0803020:CDS | 45.0% | |
| ! | GAACAAGTTGCGATTTTGCC+TGG | - | chr5_3:17996848-17996867 | None:intergenic | 45.0% |
| AAGCACGCCTAGATAAAAGG+GGG | - | chr5_3:17997400-17997419 | None:intergenic | 45.0% | |
| ! | TTCTCATCTGGTTTCGTGCA+CGG | + | chr5_3:17997586-17997605 | Msa0803020:three_prime_UTR | 45.0% |
| !! | TATTTATATGTAATTATATT+TGG | + | chr5_3:17996297-17996316 | Msa0803020:intron | 5.0% |
| !! | AACAAAAAATAAAAAATAAA+GGG | - | chr5_3:17996673-17996692 | None:intergenic | 5.0% |
| !!! | ATAAATTTTCTTTTTATAAT+TGG | + | chr5_3:17996907-17996926 | Msa0803020:intron | 5.0% |
| !!! | TAAATTTTCTTTTTATAATT+GGG | + | chr5_3:17996908-17996927 | Msa0803020:intron | 5.0% |
| ATTGGAGTGGAAGCGAGGAA+TGG | - | chr5_3:17994526-17994545 | None:intergenic | 50.0% | |
| !! | GAAGTATTGGAGTGGAAGCG+AGG | - | chr5_3:17994531-17994550 | None:intergenic | 50.0% |
| TTCAAGACTTAGAGTCCGGC+CGG | + | chr5_3:17994632-17994651 | Msa0803020:CDS | 50.0% | |
| !! | TGCCGTTGATTTGGTTTCGC+CGG | - | chr5_3:17994654-17994673 | None:intergenic | 50.0% |
| CAAACAAGACCCGACTCAAG+CGG | + | chr5_3:17994672-17994691 | Msa0803020:CDS | 50.0% | |
| !! | GGTGTTGATCTGAAACACGC+CGG | - | chr5_3:17994704-17994723 | None:intergenic | 50.0% |
| ! | TCTCTGAAAAGTGGAGACGG+CGG | - | chr5_3:17994725-17994744 | None:intergenic | 50.0% |
| TCACAGTTTCTCGCGGAGTT+CGG | - | chr5_3:17994782-17994801 | None:intergenic | 50.0% | |
| CTGGATGGCTGAACTTCATG+TGG | - | chr5_3:17995733-17995752 | None:intergenic | 50.0% | |
| CACATGAAGTTCAGCCATCC+AGG | + | chr5_3:17995731-17995750 | Msa0803020:CDS | 50.0% | |
| TCACTGCCTGTATAGCTGCA+GGG | - | chr5_3:17995852-17995871 | None:intergenic | 50.0% | |
| TTCACTGCCTGTATAGCTGC+AGG | - | chr5_3:17995853-17995872 | None:intergenic | 50.0% | |
| ! | ACGTGTGTTGTGTGTCGACG+TGG | + | chr5_3:17994412-17994431 | Msa0803020:five_prime_UTR | 55.0% |
| !! | GTTGATTTGGTTTCGCCGGC+CGG | - | chr5_3:17994650-17994669 | None:intergenic | 55.0% |
| GGCCGGCGAAACCAAATCAA+CGG | + | chr5_3:17994649-17994668 | Msa0803020:CDS | 55.0% | |
| CACAGTTTCTCGCGGAGTTC+GGG | - | chr5_3:17994781-17994800 | None:intergenic | 55.0% | |
| ACAGCGTCTTGCAGCTGAGA+GGG | + | chr5_3:17995684-17995703 | Msa0803020:CDS | 55.0% | |
| ACATCGGTCAGTCACCTGGA+TGG | - | chr5_3:17995748-17995767 | None:intergenic | 55.0% | |
| TTCTCATGAAGCCACTGCCC+AGG | + | chr5_3:17996827-17996846 | Msa0803020:CDS | 55.0% | |
| ! | TTGCGATTTTGCCTGGGCAG+TGG | - | chr5_3:17996841-17996860 | None:intergenic | 55.0% |
| !!! | AGGGATTTGTTTTGGGGGGC+AGG | + | chr5_3:17997210-17997229 | Msa0803020:intron | 55.0% |
| !!! | GGGATTTGTTTTGGGGGGCA+GGG | + | chr5_3:17997211-17997230 | Msa0803020:intron | 55.0% |
| !!! | GGATTTGTTTTGGGGGGCAG+GGG | + | chr5_3:17997212-17997231 | Msa0803020:intron | 55.0% |
| ! | TCATCTGGTTTCGTGCACGG+CGG | + | chr5_3:17997589-17997608 | Msa0803020:three_prime_UTR | 55.0% |
| ! | TGTGTCGACGTGGACGTACG+AGG | + | chr5_3:17994422-17994441 | Msa0803020:five_prime_UTR | 60.0% |
| TCGACGTGGACGTACGAGGA+AGG | + | chr5_3:17994426-17994445 | Msa0803020:five_prime_UTR | 60.0% | |
| CGGAAGCTACCGCTTGAGTC+GGG | - | chr5_3:17994684-17994703 | None:intergenic | 60.0% | |
| CCGGAAGCTACCGCTTGAGT+CGG | - | chr5_3:17994685-17994704 | None:intergenic | 60.0% | |
| CCGACTCAAGCGGTAGCTTC+CGG | + | chr5_3:17994682-17994701 | Msa0803020:CDS | 60.0% | |
| GAGTTCGGGCGTGTCTTTGG+GGG | - | chr5_3:17994767-17994786 | None:intergenic | 60.0% | |
| GGAGTTCGGGCGTGTCTTTG+GGG | - | chr5_3:17994768-17994787 | None:intergenic | 60.0% | |
| CGGAGTTCGGGCGTGTCTTT+GGG | - | chr5_3:17994769-17994788 | None:intergenic | 60.0% | |
| CACAGCGTCTTGCAGCTGAG+AGG | + | chr5_3:17995683-17995702 | Msa0803020:CDS | 60.0% | |
| TCTCCGCCCTGCAGCTATAC+AGG | + | chr5_3:17995843-17995862 | Msa0803020:intron | 60.0% | |
| CTGCCTGTATAGCTGCAGGG+CGG | - | chr5_3:17995849-17995868 | None:intergenic | 60.0% | |
| !! | GCAGGGGTGTGAGGTTTTGG+TGG | + | chr5_3:17997228-17997247 | Msa0803020:intron | 60.0% |
| ! | CATCTGGTTTCGTGCACGGC+GGG | + | chr5_3:17997590-17997609 | Msa0803020:three_prime_UTR | 60.0% |
| ! | ATCTGGTTTCGTGCACGGCG+GGG | + | chr5_3:17997591-17997610 | Msa0803020:three_prime_UTR | 60.0% |
| GCGGAGTTCGGGCGTGTCTT+TGG | - | chr5_3:17994770-17994789 | None:intergenic | 65.0% | |
| !! | TTTTGGGGGGCAGGGGTGTG+AGG | + | chr5_3:17997219-17997238 | Msa0803020:intron | 65.0% |
| !! | GGGGCAGGGGTGTGAGGTTT+TGG | + | chr5_3:17997225-17997244 | Msa0803020:intron | 65.0% |
| ! | TCTGGTTTCGTGCACGGCGG+GGG | + | chr5_3:17997592-17997611 | Msa0803020:three_prime_UTR | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 17994406 | 17997813 | 17994406 | ID=Msa0803020;Name=Msa0803020 |
| chr5_3 | mRNA | 17994406 | 17997813 | 17994406 | ID=Msa0803020-mRNA-1;Parent=Msa0803020;Name=Msa0803020-mRNA-1;_AED=0.19;_eAED=0.19;_QI=219|1|1|1|1|1|7|336|268 |
| chr5_3 | exon | 17994406 | 17994797 | 17994406 | ID=Msa0803020-mRNA-1:exon:7392;Parent=Msa0803020-mRNA-1 |
| chr5_3 | exon | 17994886 | 17994979 | 17994886 | ID=Msa0803020-mRNA-1:exon:7393;Parent=Msa0803020-mRNA-1 |
| chr5_3 | exon | 17995613 | 17995752 | 17995613 | ID=Msa0803020-mRNA-1:exon:7394;Parent=Msa0803020-mRNA-1 |
| chr5_3 | exon | 17995857 | 17995931 | 17995857 | ID=Msa0803020-mRNA-1:exon:7395;Parent=Msa0803020-mRNA-1 |
| chr5_3 | exon | 17996494 | 17996651 | 17996494 | ID=Msa0803020-mRNA-1:exon:7396;Parent=Msa0803020-mRNA-1 |
| chr5_3 | exon | 17996802 | 17996902 | 17996802 | ID=Msa0803020-mRNA-1:exon:7397;Parent=Msa0803020-mRNA-1 |
| chr5_3 | exon | 17997412 | 17997813 | 17997412 | ID=Msa0803020-mRNA-1:exon:7398;Parent=Msa0803020-mRNA-1 |
| chr5_3 | five_prime_UTR | 17994406 | 17994624 | 17994406 | ID=Msa0803020-mRNA-1:five_prime_utr;Parent=Msa0803020-mRNA-1 |
| chr5_3 | CDS | 17994625 | 17994797 | 17994625 | ID=Msa0803020-mRNA-1:cds;Parent=Msa0803020-mRNA-1 |
| chr5_3 | CDS | 17994886 | 17994979 | 17994886 | ID=Msa0803020-mRNA-1:cds;Parent=Msa0803020-mRNA-1 |
| chr5_3 | CDS | 17995613 | 17995752 | 17995613 | ID=Msa0803020-mRNA-1:cds;Parent=Msa0803020-mRNA-1 |
| chr5_3 | CDS | 17995857 | 17995931 | 17995857 | ID=Msa0803020-mRNA-1:cds;Parent=Msa0803020-mRNA-1 |
| chr5_3 | CDS | 17996494 | 17996651 | 17996494 | ID=Msa0803020-mRNA-1:cds;Parent=Msa0803020-mRNA-1 |
| chr5_3 | CDS | 17996802 | 17996902 | 17996802 | ID=Msa0803020-mRNA-1:cds;Parent=Msa0803020-mRNA-1 |
| chr5_3 | CDS | 17997412 | 17997477 | 17997412 | ID=Msa0803020-mRNA-1:cds;Parent=Msa0803020-mRNA-1 |
| chr5_3 | three_prime_UTR | 17997478 | 17997813 | 17997478 | ID=Msa0803020-mRNA-1:three_prime_utr;Parent=Msa0803020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
