Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447070 | sp|P24397|HY6H_HYONI | 44.872 | 78 | 37 | 1 | 2 | 73 | 261 | 338 | 1.66e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447070 | A0A396HAK2 | 96.250 | 80 | 3 | 0 | 1 | 80 | 260 | 339 | 7.09e-47 | 161 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0671640 | Msa1447070 | 0.806750 | 7.068454e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447070 | MtrunA17_Chr6g0455481 | 96.250 | 80 | 3 | 0 | 1 | 80 | 260 | 339 | 1.37e-50 | 161 |
| Msa1447070 | MtrunA17_Chr7g0220011 | 56.410 | 78 | 34 | 0 | 1 | 78 | 256 | 333 | 9.40e-25 | 94.0 |
| Msa1447070 | MtrunA17_Chr1g0184121 | 49.367 | 79 | 40 | 0 | 2 | 80 | 258 | 336 | 1.98e-21 | 85.5 |
| Msa1447070 | MtrunA17_Chr1g0184111 | 49.367 | 79 | 40 | 0 | 2 | 80 | 258 | 336 | 3.73e-21 | 84.7 |
| Msa1447070 | MtrunA17_Chr7g0220001 | 53.333 | 75 | 35 | 0 | 1 | 75 | 258 | 332 | 1.47e-20 | 82.8 |
| Msa1447070 | MtrunA17_Chr1g0184131 | 50.725 | 69 | 34 | 0 | 1 | 69 | 75 | 143 | 5.38e-19 | 75.9 |
| Msa1447070 | MtrunA17_Chr1g0184161 | 43.038 | 79 | 45 | 0 | 2 | 80 | 258 | 336 | 4.07e-18 | 76.3 |
| Msa1447070 | MtrunA17_Chr1g0184101 | 45.570 | 79 | 43 | 0 | 1 | 79 | 257 | 335 | 1.89e-17 | 74.3 |
| Msa1447070 | MtrunA17_Chr1g0184151 | 36.709 | 79 | 50 | 0 | 2 | 80 | 258 | 336 | 7.34e-14 | 64.7 |
| Msa1447070 | MtrunA17_Chr4g0006371 | 39.437 | 71 | 43 | 0 | 2 | 72 | 289 | 359 | 2.58e-12 | 60.1 |
| Msa1447070 | MtrunA17_Chr1g0162321 | 38.095 | 63 | 39 | 0 | 1 | 63 | 309 | 371 | 4.97e-12 | 59.3 |
| Msa1447070 | MtrunA17_Chr1g0162351 | 38.095 | 63 | 39 | 0 | 1 | 63 | 309 | 371 | 5.70e-12 | 59.3 |
| Msa1447070 | MtrunA17_Chr1g0194321 | 34.328 | 67 | 44 | 0 | 2 | 68 | 252 | 318 | 6.35e-12 | 59.3 |
| Msa1447070 | MtrunA17_Chr5g0437181 | 40.845 | 71 | 42 | 0 | 2 | 72 | 275 | 345 | 7.06e-12 | 58.9 |
| Msa1447070 | MtrunA17_Chr7g0242551 | 40.845 | 71 | 42 | 0 | 2 | 72 | 281 | 351 | 1.36e-11 | 58.2 |
| Msa1447070 | MtrunA17_Chr4g0045411 | 37.500 | 64 | 40 | 0 | 1 | 64 | 263 | 326 | 3.18e-11 | 57.0 |
| Msa1447070 | MtrunA17_Chr5g0394071 | 44.928 | 69 | 32 | 1 | 6 | 74 | 112 | 174 | 3.61e-11 | 55.8 |
| Msa1447070 | MtrunA17_Chr8g0375701 | 38.571 | 70 | 43 | 0 | 1 | 70 | 273 | 342 | 4.93e-11 | 56.6 |
| Msa1447070 | MtrunA17_Chr3g0109041 | 39.130 | 69 | 42 | 0 | 4 | 72 | 273 | 341 | 6.29e-11 | 56.2 |
| Msa1447070 | MtrunA17_Chr8g0375681 | 37.143 | 70 | 44 | 0 | 1 | 70 | 203 | 272 | 8.95e-11 | 55.8 |
| Msa1447070 | MtrunA17_Chr3g0087031 | 37.143 | 70 | 44 | 0 | 1 | 70 | 279 | 348 | 9.09e-11 | 55.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1447070 | AT4G16330.1 | 44.286 | 70 | 35 | 1 | 4 | 73 | 183 | 248 | 9.83e-13 | 61.2 |
| Msa1447070 | AT4G16330.2 | 44.286 | 70 | 35 | 1 | 4 | 73 | 289 | 354 | 1.85e-12 | 61.2 |
| Msa1447070 | AT5G05600.1 | 36.709 | 79 | 50 | 0 | 2 | 80 | 288 | 366 | 3.97e-12 | 60.1 |
| Msa1447070 | AT1G78550.2 | 45.588 | 68 | 37 | 0 | 1 | 68 | 196 | 263 | 5.14e-12 | 59.7 |
| Msa1447070 | AT5G59540.1 | 42.466 | 73 | 39 | 1 | 2 | 71 | 282 | 354 | 5.62e-12 | 59.7 |
| Msa1447070 | AT1G78550.1 | 45.588 | 68 | 37 | 0 | 1 | 68 | 274 | 341 | 6.83e-12 | 59.3 |
| Msa1447070 | AT3G11180.1 | 36.111 | 72 | 46 | 0 | 2 | 73 | 317 | 388 | 3.32e-11 | 57.4 |
| Msa1447070 | AT3G19010.1 | 41.270 | 63 | 37 | 0 | 1 | 63 | 261 | 323 | 3.64e-11 | 57.4 |
| Msa1447070 | AT3G19010.4 | 41.270 | 63 | 37 | 0 | 1 | 63 | 261 | 323 | 3.64e-11 | 57.4 |
| Msa1447070 | AT3G19010.3 | 41.270 | 63 | 37 | 0 | 1 | 63 | 231 | 293 | 3.79e-11 | 57.4 |
Find 16 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGACATGGATTTATATAT+TGG | 0.234856 | tig0031569:-5781 | None:intergenic |
| TGCAACACCTGTTCAATCTT+AGG | 0.324493 | tig0031569:-5838 | None:intergenic |
| TGTTAGATTGATGATGATTT+CGG | 0.352582 | tig0031569:+3764 | None:intergenic |
| CGTAAGAAGTTCTATGATAA+GGG | 0.362739 | tig0031569:+5814 | Msa1447070:CDS |
| TCGTAAGAAGTTCTATGATA+AGG | 0.382043 | tig0031569:+5813 | Msa1447070:CDS |
| ATATATAAATCCATGTCATT+TGG | 0.395435 | tig0031569:+5784 | Msa1447070:CDS |
| GATAGAACCTGCAAAAGAAT+TGG | 0.405411 | tig0031569:+5741 | Msa1447070:CDS |
| TCTATCATTCTTGAAAATGA+TGG | 0.418610 | tig0031569:-5724 | None:intergenic |
| ATCACCAATGGAAGGCTTGT+TGG | 0.436484 | tig0031569:+5637 | Msa1447070:CDS |
| CCTGCAAAAGAATTGGTAGA+TGG | 0.466753 | tig0031569:+5748 | Msa1447070:CDS |
| GACATGGATTTATATATTGG+AGG | 0.474174 | tig0031569:-5778 | None:intergenic |
| AGCACCAACAAGCCTTCCAT+TGG | 0.501472 | tig0031569:-5641 | None:intergenic |
| TAAGGGTCCTAAGATTGAAC+AGG | 0.503912 | tig0031569:+5831 | Msa1447070:CDS |
| TTCAGATAATCACCAATGGA+AGG | 0.573552 | tig0031569:+5629 | Msa1447070:intron |
| ACGAAATTCTCCAAATGACA+TGG | 0.578964 | tig0031569:-5794 | None:intergenic |
| TCATTTCAGATAATCACCAA+TGG | 0.631009 | tig0031569:+5625 | Msa1447070:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTTTATTTGTTATTT+TGG | - | tig0031569:4154-4173 | None:intergenic | 10.0% |
| !!! | TTCTTTTTTATTTGTTATTT+TGG | - | tig0031569:4154-4173 | None:intergenic | 10.0% |
| !!! | TTTTTAGTCGTATTTTAAAA+CGG | - | tig0031569:4722-4741 | None:intergenic | 15.0% |
| !! | TATATTACTAAGAATTCATT+TGG | - | tig0031569:4781-4800 | None:intergenic | 15.0% |
| !!! | TTTTTAGTCGTATTTTAAAA+CGG | - | tig0031569:4722-4741 | None:intergenic | 15.0% |
| !! | TATATTACTAAGAATTCATT+TGG | - | tig0031569:4781-4800 | None:intergenic | 15.0% |
| !! | ACTCATAAAACTAAATGAAA+AGG | + | tig0031569:4204-4223 | Msa1447070:intron | 20.0% |
| !! | CTCATAAAACTAAATGAAAA+GGG | + | tig0031569:4205-4224 | Msa1447070:intron | 20.0% |
| !! | AAATATTAAAATGTCCCTTT+CGG | + | tig0031569:4363-4382 | Msa1447070:intron | 20.0% |
| !!! | TTTTAAGAGGTTTAAACATA+CGG | + | tig0031569:4471-4490 | Msa1447070:intron | 20.0% |
| !! | AATGCTTAAAAATACGAATA+AGG | + | tig0031569:4566-4585 | Msa1447070:intron | 20.0% |
| !!! | GCTTTAAAATACAAGATAAA+AGG | + | tig0031569:4627-4646 | Msa1447070:intron | 20.0% |
| !! | AAGAATTCTAATGCTTATAA+AGG | + | tig0031569:4803-4822 | Msa1447070:intron | 20.0% |
| !! | TTAAACCAGAATATTTCATT+GGG | + | tig0031569:5069-5088 | Msa1447070:intron | 20.0% |
| !!! | TATCTTCTCTCATTTTTATT+TGG | + | tig0031569:5332-5351 | Msa1447070:intron | 20.0% |
| !! | AATGACATGGATTTATATAT+TGG | - | tig0031569:5784-5803 | None:intergenic | 20.0% |
| !! | ATATATAAATCCATGTCATT+TGG | + | tig0031569:5784-5803 | Msa1447070:CDS | 20.0% |
| !! | ACTCATAAAACTAAATGAAA+AGG | + | tig0031569:4204-4223 | Msa1447070:intron | 20.0% |
| !! | CTCATAAAACTAAATGAAAA+GGG | + | tig0031569:4205-4224 | Msa1447070:intron | 20.0% |
| !! | AAATATTAAAATGTCCCTTT+CGG | + | tig0031569:4363-4382 | Msa1447070:intron | 20.0% |
| !!! | TTTTAAGAGGTTTAAACATA+CGG | + | tig0031569:4471-4490 | Msa1447070:intron | 20.0% |
| !! | AATGCTTAAAAATACGAATA+AGG | + | tig0031569:4566-4585 | Msa1447070:intron | 20.0% |
| !!! | GCTTTAAAATACAAGATAAA+AGG | + | tig0031569:4627-4646 | Msa1447070:intron | 20.0% |
| !! | AAGAATTCTAATGCTTATAA+AGG | + | tig0031569:4803-4822 | Msa1447070:intron | 20.0% |
| !! | TTAAACCAGAATATTTCATT+GGG | + | tig0031569:5069-5088 | Msa1447070:intron | 20.0% |
| !!! | TATCTTCTCTCATTTTTATT+TGG | + | tig0031569:5332-5351 | Msa1447070:intron | 20.0% |
| !! | AATGACATGGATTTATATAT+TGG | - | tig0031569:5784-5803 | None:intergenic | 20.0% |
| !! | ATATATAAATCCATGTCATT+TGG | + | tig0031569:5784-5803 | Msa1447070:CDS | 20.0% |
| ! | TTTGTGATTTGATCTGAAAA+AGG | + | tig0031569:3865-3884 | Msa1447070:intron | 25.0% |
| ! | TTGTGATTTGATCTGAAAAA+GGG | + | tig0031569:3866-3885 | Msa1447070:intron | 25.0% |
| ! | TGTGTTTGTAATAACTTTCT+GGG | + | tig0031569:3907-3926 | Msa1447070:intron | 25.0% |
| ! | TGTCTTAAATAGCAAAAAGT+AGG | + | tig0031569:3973-3992 | Msa1447070:intron | 25.0% |
| ! | GTCTTAAATAGCAAAAAGTA+GGG | + | tig0031569:3974-3993 | Msa1447070:intron | 25.0% |
| !! | CGACTAAAAAGATTTTTAAC+TGG | + | tig0031569:4732-4751 | Msa1447070:intron | 25.0% |
| !!! | ATTTTTAACTGGTCCAAAAT+TGG | + | tig0031569:4743-4762 | Msa1447070:intron | 25.0% |
| !!! | TTTTTAACTGGTCCAAAATT+GGG | + | tig0031569:4744-4763 | Msa1447070:intron | 25.0% |
| !!! | TTTGATCATTTGACTAGTTT+TGG | + | tig0031569:4858-4877 | Msa1447070:intron | 25.0% |
| !! | TTGGACATAAATATTTTGCA+TGG | + | tig0031569:4877-4896 | Msa1447070:intron | 25.0% |
| !! | TGGACATAAATATTTTGCAT+GGG | + | tig0031569:4878-4897 | Msa1447070:intron | 25.0% |
| !! | GAGTTAAATTTGTTTACTTG+AGG | - | tig0031569:4954-4973 | None:intergenic | 25.0% |
| ! | CTTAAACCAGAATATTTCAT+TGG | + | tig0031569:5068-5087 | Msa1447070:intron | 25.0% |
| ! | TAAACCAGAATATTTCATTG+GGG | + | tig0031569:5070-5089 | Msa1447070:intron | 25.0% |
| !!! | ATGTTAACAACAAAAGCATT+GGG | - | tig0031569:5275-5294 | None:intergenic | 25.0% |
| !! | AATGTTAACAACAAAAGCAT+TGG | - | tig0031569:5276-5295 | None:intergenic | 25.0% |
| !!! | AATGCTTTTGTTGTTAACAT+TGG | + | tig0031569:5275-5294 | Msa1447070:intron | 25.0% |
| ! | AAAACCACGTTGAAATATTT+CGG | - | tig0031569:5413-5432 | None:intergenic | 25.0% |
| ! | TCTATCATTCTTGAAAATGA+TGG | - | tig0031569:5727-5746 | None:intergenic | 25.0% |
| ! | TTTGTGATTTGATCTGAAAA+AGG | + | tig0031569:3865-3884 | Msa1447070:intron | 25.0% |
| ! | TTGTGATTTGATCTGAAAAA+GGG | + | tig0031569:3866-3885 | Msa1447070:intron | 25.0% |
| ! | TGTGTTTGTAATAACTTTCT+GGG | + | tig0031569:3907-3926 | Msa1447070:intron | 25.0% |
| ! | TGTCTTAAATAGCAAAAAGT+AGG | + | tig0031569:3973-3992 | Msa1447070:intron | 25.0% |
| ! | GTCTTAAATAGCAAAAAGTA+GGG | + | tig0031569:3974-3993 | Msa1447070:intron | 25.0% |
| !! | CGACTAAAAAGATTTTTAAC+TGG | + | tig0031569:4732-4751 | Msa1447070:intron | 25.0% |
| !!! | ATTTTTAACTGGTCCAAAAT+TGG | + | tig0031569:4743-4762 | Msa1447070:intron | 25.0% |
| !!! | TTTTTAACTGGTCCAAAATT+GGG | + | tig0031569:4744-4763 | Msa1447070:intron | 25.0% |
| !!! | TTTGATCATTTGACTAGTTT+TGG | + | tig0031569:4858-4877 | Msa1447070:intron | 25.0% |
| !! | TTGGACATAAATATTTTGCA+TGG | + | tig0031569:4877-4896 | Msa1447070:intron | 25.0% |
| !! | TGGACATAAATATTTTGCAT+GGG | + | tig0031569:4878-4897 | Msa1447070:intron | 25.0% |
| !! | GAGTTAAATTTGTTTACTTG+AGG | - | tig0031569:4954-4973 | None:intergenic | 25.0% |
| ! | CTTAAACCAGAATATTTCAT+TGG | + | tig0031569:5068-5087 | Msa1447070:intron | 25.0% |
| ! | TAAACCAGAATATTTCATTG+GGG | + | tig0031569:5070-5089 | Msa1447070:intron | 25.0% |
| !!! | ATGTTAACAACAAAAGCATT+GGG | - | tig0031569:5275-5294 | None:intergenic | 25.0% |
| !! | AATGTTAACAACAAAAGCAT+TGG | - | tig0031569:5276-5295 | None:intergenic | 25.0% |
| !!! | AATGCTTTTGTTGTTAACAT+TGG | + | tig0031569:5275-5294 | Msa1447070:intron | 25.0% |
| ! | AAAACCACGTTGAAATATTT+CGG | - | tig0031569:5413-5432 | None:intergenic | 25.0% |
| ! | TCTATCATTCTTGAAAATGA+TGG | - | tig0031569:5727-5746 | None:intergenic | 25.0% |
| ATAGTGTGTTTATGTGATTC+TGG | + | tig0031569:3802-3821 | Msa1447070:intron | 30.0% | |
| TAGTGTGTTTATGTGATTCT+GGG | + | tig0031569:3803-3822 | Msa1447070:intron | 30.0% | |
| AAAAAGGGAAGAAAGAGAAA+TGG | + | tig0031569:3881-3900 | Msa1447070:intron | 30.0% | |
| GTGTGTTTGTAATAACTTTC+TGG | + | tig0031569:3906-3925 | Msa1447070:intron | 30.0% | |
| GTGTTTGTAATAACTTTCTG+GGG | + | tig0031569:3908-3927 | Msa1447070:intron | 30.0% | |
| AAATACCTCATTTACCGAAA+GGG | - | tig0031569:4380-4399 | None:intergenic | 30.0% | |
| AAAATACCTCATTTACCGAA+AGG | - | tig0031569:4381-4400 | None:intergenic | 30.0% | |
| !! | GCGAACAAAAACTTTTTAAG+AGG | + | tig0031569:4458-4477 | Msa1447070:intron | 30.0% |
| ATCAAACAACGACTAAACAA+AGG | + | tig0031569:4659-4678 | Msa1447070:intron | 30.0% | |
| !! | GACTAAACAAAGGTTTTAAC+TGG | + | tig0031569:4669-4688 | Msa1447070:intron | 30.0% |
| !! | TTTTAACTGGTCCAAAATTG+GGG | + | tig0031569:4745-4764 | Msa1447070:intron | 30.0% |
| ! | GTATTTTCATACCCCAATTT+TGG | - | tig0031569:4759-4778 | None:intergenic | 30.0% |
| TGTTTACTTGAGGTGAAATT+TGG | - | tig0031569:4944-4963 | None:intergenic | 30.0% | |
| TACACAAGAACTGAACAAAT+TGG | + | tig0031569:5007-5026 | Msa1447070:intron | 30.0% | |
| ACACAAGAACTGAACAAATT+GGG | + | tig0031569:5008-5027 | Msa1447070:intron | 30.0% | |
| ! | CAAATTGGGACATGAAATTT+TGG | + | tig0031569:5022-5041 | Msa1447070:intron | 30.0% |
| GTAGAATAGTGATGATTGTA+GGG | - | tig0031569:5184-5203 | None:intergenic | 30.0% | |
| AGTAGAATAGTGATGATTGT+AGG | - | tig0031569:5185-5204 | None:intergenic | 30.0% | |
| TATTCTACTTCAAGATCAAG+AGG | + | tig0031569:5196-5215 | Msa1447070:intron | 30.0% | |
| AAGTTCTTAAGGATGATGAA+TGG | + | tig0031569:5231-5250 | Msa1447070:intron | 30.0% | |
| !! | TAACATTGGTTTAATCTTGC+AGG | + | tig0031569:5289-5308 | Msa1447070:intron | 30.0% |
| !!! | CGGATTTTAAAATCCGAATA+GGG | - | tig0031569:5393-5412 | None:intergenic | 30.0% |
| !!! | TCGGATTTTAAAATCCGAAT+AGG | - | tig0031569:5394-5413 | None:intergenic | 30.0% |
| AAATCCGAAATATTTCAACG+TGG | + | tig0031569:5406-5425 | Msa1447070:intron | 30.0% | |
| !!! | ATATTTCAACGTGGTTTTGA+AGG | + | tig0031569:5415-5434 | Msa1447070:intron | 30.0% |
| !!! | TTTTAAAATCCGAACTGCAA+AGG | + | tig0031569:5465-5484 | Msa1447070:intron | 30.0% |
| ! | TTTAAAATCCGAACTGCAAA+GGG | + | tig0031569:5466-5485 | Msa1447070:intron | 30.0% |
| TCATTTCAGATAATCACCAA+TGG | + | tig0031569:5625-5644 | Msa1447070:intron | 30.0% | |
| GACATGGATTTATATATTGG+AGG | - | tig0031569:5781-5800 | None:intergenic | 30.0% | |
| TCGTAAGAAGTTCTATGATA+AGG | + | tig0031569:5813-5832 | Msa1447070:CDS | 30.0% | |
| CGTAAGAAGTTCTATGATAA+GGG | + | tig0031569:5814-5833 | Msa1447070:CDS | 30.0% | |
| ATAGTGTGTTTATGTGATTC+TGG | + | tig0031569:3802-3821 | Msa1447070:intron | 30.0% | |
| TAGTGTGTTTATGTGATTCT+GGG | + | tig0031569:3803-3822 | Msa1447070:intron | 30.0% | |
| AAAAAGGGAAGAAAGAGAAA+TGG | + | tig0031569:3881-3900 | Msa1447070:intron | 30.0% | |
| GTGTGTTTGTAATAACTTTC+TGG | + | tig0031569:3906-3925 | Msa1447070:intron | 30.0% | |
| GTGTTTGTAATAACTTTCTG+GGG | + | tig0031569:3908-3927 | Msa1447070:intron | 30.0% | |
| AAATACCTCATTTACCGAAA+GGG | - | tig0031569:4380-4399 | None:intergenic | 30.0% | |
| AAAATACCTCATTTACCGAA+AGG | - | tig0031569:4381-4400 | None:intergenic | 30.0% | |
| !! | GCGAACAAAAACTTTTTAAG+AGG | + | tig0031569:4458-4477 | Msa1447070:intron | 30.0% |
| ATCAAACAACGACTAAACAA+AGG | + | tig0031569:4659-4678 | Msa1447070:intron | 30.0% | |
| !! | GACTAAACAAAGGTTTTAAC+TGG | + | tig0031569:4669-4688 | Msa1447070:intron | 30.0% |
| !! | TTTTAACTGGTCCAAAATTG+GGG | + | tig0031569:4745-4764 | Msa1447070:intron | 30.0% |
| ! | GTATTTTCATACCCCAATTT+TGG | - | tig0031569:4759-4778 | None:intergenic | 30.0% |
| TGTTTACTTGAGGTGAAATT+TGG | - | tig0031569:4944-4963 | None:intergenic | 30.0% | |
| TACACAAGAACTGAACAAAT+TGG | + | tig0031569:5007-5026 | Msa1447070:intron | 30.0% | |
| ACACAAGAACTGAACAAATT+GGG | + | tig0031569:5008-5027 | Msa1447070:intron | 30.0% | |
| ! | CAAATTGGGACATGAAATTT+TGG | + | tig0031569:5022-5041 | Msa1447070:intron | 30.0% |
| GTAGAATAGTGATGATTGTA+GGG | - | tig0031569:5184-5203 | None:intergenic | 30.0% | |
| AGTAGAATAGTGATGATTGT+AGG | - | tig0031569:5185-5204 | None:intergenic | 30.0% | |
| TATTCTACTTCAAGATCAAG+AGG | + | tig0031569:5196-5215 | Msa1447070:intron | 30.0% | |
| AAGTTCTTAAGGATGATGAA+TGG | + | tig0031569:5231-5250 | Msa1447070:intron | 30.0% | |
| !! | TAACATTGGTTTAATCTTGC+AGG | + | tig0031569:5289-5308 | Msa1447070:intron | 30.0% |
| !!! | CGGATTTTAAAATCCGAATA+GGG | - | tig0031569:5393-5412 | None:intergenic | 30.0% |
| !!! | TCGGATTTTAAAATCCGAAT+AGG | - | tig0031569:5394-5413 | None:intergenic | 30.0% |
| AAATCCGAAATATTTCAACG+TGG | + | tig0031569:5406-5425 | Msa1447070:intron | 30.0% | |
| !!! | ATATTTCAACGTGGTTTTGA+AGG | + | tig0031569:5415-5434 | Msa1447070:intron | 30.0% |
| !!! | TTTTAAAATCCGAACTGCAA+AGG | + | tig0031569:5465-5484 | Msa1447070:intron | 30.0% |
| ! | TTTAAAATCCGAACTGCAAA+GGG | + | tig0031569:5466-5485 | Msa1447070:intron | 30.0% |
| TCATTTCAGATAATCACCAA+TGG | + | tig0031569:5625-5644 | Msa1447070:intron | 30.0% | |
| GACATGGATTTATATATTGG+AGG | - | tig0031569:5781-5800 | None:intergenic | 30.0% | |
| TCGTAAGAAGTTCTATGATA+AGG | + | tig0031569:5813-5832 | Msa1447070:CDS | 30.0% | |
| CGTAAGAAGTTCTATGATAA+GGG | + | tig0031569:5814-5833 | Msa1447070:CDS | 30.0% | |
| CAAAAGACAGTATTACCCTT+AGG | + | tig0031569:4015-4034 | Msa1447070:intron | 35.0% | |
| !! | CACTTGATTTTAGTCCTTGT+AGG | - | tig0031569:4130-4149 | None:intergenic | 35.0% |
| AACCGTTTCAGTCGAAATTT+CGG | - | tig0031569:4418-4437 | None:intergenic | 35.0% | |
| !! | TTTTGTTCGCGTTCTAAACA+CGG | - | tig0031569:4448-4467 | None:intergenic | 35.0% |
| !!! | AGGTGATTTTAAGATACGTG+AGG | + | tig0031569:4586-4605 | Msa1447070:intron | 35.0% |
| !! | ATTTTGGAGATGCTTTGTGA+AGG | + | tig0031569:5038-5057 | Msa1447070:intron | 35.0% |
| !! | TTTTGGAGATGCTTTGTGAA+GGG | + | tig0031569:5039-5058 | Msa1447070:intron | 35.0% |
| AGTTCCCCAATGAAATATTC+TGG | - | tig0031569:5077-5096 | None:intergenic | 35.0% | |
| CCAAAGTTAAACTTGGTTCA+GGG | - | tig0031569:5142-5161 | None:intergenic | 35.0% | |
| ! | CCTGAACCAAGTTTAACTTT+GGG | + | tig0031569:5140-5159 | Msa1447070:intron | 35.0% |
| CATCATCCTTAAGAACTTGA+AGG | - | tig0031569:5229-5248 | None:intergenic | 35.0% | |
| !! | ACAACAAAAGCATTGGGAAT+AGG | - | tig0031569:5269-5288 | None:intergenic | 35.0% |
| !!! | GTGGTTTTGAAGGTTTTATG+AGG | + | tig0031569:5425-5444 | Msa1447070:intron | 35.0% |
| TTCAGATAATCACCAATGGA+AGG | + | tig0031569:5629-5648 | Msa1447070:intron | 35.0% | |
| GATAGAACCTGCAAAAGAAT+TGG | + | tig0031569:5741-5760 | Msa1447070:CDS | 35.0% | |
| ACGAAATTCTCCAAATGACA+TGG | - | tig0031569:5797-5816 | None:intergenic | 35.0% | |
| CAAAAGACAGTATTACCCTT+AGG | + | tig0031569:4015-4034 | Msa1447070:intron | 35.0% | |
| !! | CACTTGATTTTAGTCCTTGT+AGG | - | tig0031569:4130-4149 | None:intergenic | 35.0% |
| AACCGTTTCAGTCGAAATTT+CGG | - | tig0031569:4418-4437 | None:intergenic | 35.0% | |
| !! | TTTTGTTCGCGTTCTAAACA+CGG | - | tig0031569:4448-4467 | None:intergenic | 35.0% |
| !!! | AGGTGATTTTAAGATACGTG+AGG | + | tig0031569:4586-4605 | Msa1447070:intron | 35.0% |
| !! | ATTTTGGAGATGCTTTGTGA+AGG | + | tig0031569:5038-5057 | Msa1447070:intron | 35.0% |
| !! | TTTTGGAGATGCTTTGTGAA+GGG | + | tig0031569:5039-5058 | Msa1447070:intron | 35.0% |
| AGTTCCCCAATGAAATATTC+TGG | - | tig0031569:5077-5096 | None:intergenic | 35.0% | |
| CCAAAGTTAAACTTGGTTCA+GGG | - | tig0031569:5142-5161 | None:intergenic | 35.0% | |
| ! | CCTGAACCAAGTTTAACTTT+GGG | + | tig0031569:5140-5159 | Msa1447070:intron | 35.0% |
| CATCATCCTTAAGAACTTGA+AGG | - | tig0031569:5229-5248 | None:intergenic | 35.0% | |
| !! | ACAACAAAAGCATTGGGAAT+AGG | - | tig0031569:5269-5288 | None:intergenic | 35.0% |
| !!! | GTGGTTTTGAAGGTTTTATG+AGG | + | tig0031569:5425-5444 | Msa1447070:intron | 35.0% |
| TTCAGATAATCACCAATGGA+AGG | + | tig0031569:5629-5648 | Msa1447070:intron | 35.0% | |
| GATAGAACCTGCAAAAGAAT+TGG | + | tig0031569:5741-5760 | Msa1447070:CDS | 35.0% | |
| ACGAAATTCTCCAAATGACA+TGG | - | tig0031569:5797-5816 | None:intergenic | 35.0% | |
| ! | TGTCTTTTGCATCAGAGTCA+GGG | - | tig0031569:4004-4023 | None:intergenic | 40.0% |
| TGAACAGGGAAAAAGAGGAT+TGG | + | tig0031569:4051-4070 | Msa1447070:intron | 40.0% | |
| AATGTCCCTTTCGGTAAATG+AGG | + | tig0031569:4372-4391 | Msa1447070:intron | 40.0% | |
| TGCCGAAATTTCGACTGAAA+CGG | + | tig0031569:4413-4432 | Msa1447070:intron | 40.0% | |
| ! | CTCTCTTTTCTTCTTCAGTG+AGG | + | tig0031569:4971-4990 | Msa1447070:intron | 40.0% |
| TTCTTCTTCAGTGAGGTTGT+TGG | + | tig0031569:4978-4997 | Msa1447070:intron | 40.0% | |
| AGATGCTTTGTGAAGGGTTA+GGG | + | tig0031569:5045-5064 | Msa1447070:intron | 40.0% | |
| AAGTGATGAGCTAGTACTAC+TGG | - | tig0031569:5110-5129 | None:intergenic | 40.0% | |
| ! | CCCTGAACCAAGTTTAACTT+TGG | + | tig0031569:5139-5158 | Msa1447070:intron | 40.0% |
| CCCAAAGTTAAACTTGGTTC+AGG | - | tig0031569:5143-5162 | None:intergenic | 40.0% | |
| GCTAGACCCAAAGTTAAACT+TGG | - | tig0031569:5149-5168 | None:intergenic | 40.0% | |
| GATTGTAGGGTCTCTATGTT+TGG | - | tig0031569:5171-5190 | None:intergenic | 40.0% | |
| ! | CTTCAAGATCAAGAGGTACA+TGG | + | tig0031569:5203-5222 | Msa1447070:intron | 40.0% |
| ! | ACATGGCCTTCAAGTTCTTA+AGG | + | tig0031569:5220-5239 | Msa1447070:intron | 40.0% |
| TGTGTGAGAAACTCATAGGA+CGG | + | tig0031569:5489-5508 | Msa1447070:intron | 40.0% | |
| ! | CCATCTACCAATTCTTTTGC+AGG | - | tig0031569:5751-5770 | None:intergenic | 40.0% |
| CCTGCAAAAGAATTGGTAGA+TGG | + | tig0031569:5748-5767 | Msa1447070:CDS | 40.0% | |
| TAAGGGTCCTAAGATTGAAC+AGG | + | tig0031569:5831-5850 | Msa1447070:CDS | 40.0% | |
| TGCAACACCTGTTCAATCTT+AGG | - | tig0031569:5841-5860 | None:intergenic | 40.0% | |
| ! | TGTCTTTTGCATCAGAGTCA+GGG | - | tig0031569:4004-4023 | None:intergenic | 40.0% |
| TGAACAGGGAAAAAGAGGAT+TGG | + | tig0031569:4051-4070 | Msa1447070:intron | 40.0% | |
| AATGTCCCTTTCGGTAAATG+AGG | + | tig0031569:4372-4391 | Msa1447070:intron | 40.0% | |
| TGCCGAAATTTCGACTGAAA+CGG | + | tig0031569:4413-4432 | Msa1447070:intron | 40.0% | |
| ! | CTCTCTTTTCTTCTTCAGTG+AGG | + | tig0031569:4971-4990 | Msa1447070:intron | 40.0% |
| TTCTTCTTCAGTGAGGTTGT+TGG | + | tig0031569:4978-4997 | Msa1447070:intron | 40.0% | |
| AGATGCTTTGTGAAGGGTTA+GGG | + | tig0031569:5045-5064 | Msa1447070:intron | 40.0% | |
| AAGTGATGAGCTAGTACTAC+TGG | - | tig0031569:5110-5129 | None:intergenic | 40.0% | |
| ! | CCCTGAACCAAGTTTAACTT+TGG | + | tig0031569:5139-5158 | Msa1447070:intron | 40.0% |
| CCCAAAGTTAAACTTGGTTC+AGG | - | tig0031569:5143-5162 | None:intergenic | 40.0% | |
| GCTAGACCCAAAGTTAAACT+TGG | - | tig0031569:5149-5168 | None:intergenic | 40.0% | |
| GATTGTAGGGTCTCTATGTT+TGG | - | tig0031569:5171-5190 | None:intergenic | 40.0% | |
| ! | CTTCAAGATCAAGAGGTACA+TGG | + | tig0031569:5203-5222 | Msa1447070:intron | 40.0% |
| ! | ACATGGCCTTCAAGTTCTTA+AGG | + | tig0031569:5220-5239 | Msa1447070:intron | 40.0% |
| TGTGTGAGAAACTCATAGGA+CGG | + | tig0031569:5489-5508 | Msa1447070:intron | 40.0% | |
| ! | CCATCTACCAATTCTTTTGC+AGG | - | tig0031569:5751-5770 | None:intergenic | 40.0% |
| CCTGCAAAAGAATTGGTAGA+TGG | + | tig0031569:5748-5767 | Msa1447070:CDS | 40.0% | |
| TAAGGGTCCTAAGATTGAAC+AGG | + | tig0031569:5831-5850 | Msa1447070:CDS | 40.0% | |
| TGCAACACCTGTTCAATCTT+AGG | - | tig0031569:5841-5860 | None:intergenic | 40.0% | |
| ! | CTGTCTTTTGCATCAGAGTC+AGG | - | tig0031569:4005-4024 | None:intergenic | 45.0% |
| ACCATGTGGCAGTCTCATAT+TGG | - | tig0031569:4098-4117 | None:intergenic | 45.0% | |
| ATGGTCAAAGTGGACCTACA+AGG | + | tig0031569:4113-4132 | Msa1447070:intron | 45.0% | |
| GAGATGCTTTGTGAAGGGTT+AGG | + | tig0031569:5044-5063 | Msa1447070:intron | 45.0% | |
| GTTAAACTTGGTTCAGGGCA+AGG | - | tig0031569:5137-5156 | None:intergenic | 45.0% | |
| GCATTGGGAATAGGTTCAAC+TGG | - | tig0031569:5260-5279 | None:intergenic | 45.0% | |
| AGGGTGTGTGAGAAACTCAT+AGG | + | tig0031569:5485-5504 | Msa1447070:intron | 45.0% | |
| GTGTGAGAAACTCATAGGAC+GGG | + | tig0031569:5490-5509 | Msa1447070:intron | 45.0% | |
| ATCACCAATGGAAGGCTTGT+TGG | + | tig0031569:5637-5656 | Msa1447070:CDS | 45.0% | |
| ! | CTGTCTTTTGCATCAGAGTC+AGG | - | tig0031569:4005-4024 | None:intergenic | 45.0% |
| ACCATGTGGCAGTCTCATAT+TGG | - | tig0031569:4098-4117 | None:intergenic | 45.0% | |
| ATGGTCAAAGTGGACCTACA+AGG | + | tig0031569:4113-4132 | Msa1447070:intron | 45.0% | |
| GAGATGCTTTGTGAAGGGTT+AGG | + | tig0031569:5044-5063 | Msa1447070:intron | 45.0% | |
| GTTAAACTTGGTTCAGGGCA+AGG | - | tig0031569:5137-5156 | None:intergenic | 45.0% | |
| GCATTGGGAATAGGTTCAAC+TGG | - | tig0031569:5260-5279 | None:intergenic | 45.0% | |
| AGGGTGTGTGAGAAACTCAT+AGG | + | tig0031569:5485-5504 | Msa1447070:intron | 45.0% | |
| GTGTGAGAAACTCATAGGAC+GGG | + | tig0031569:5490-5509 | Msa1447070:intron | 45.0% | |
| ATCACCAATGGAAGGCTTGT+TGG | + | tig0031569:5637-5656 | Msa1447070:CDS | 45.0% | |
| TCAGTGTCAGAGTCAGTGCA+GGG | - | tig0031569:3949-3968 | None:intergenic | 50.0% | |
| TTCAGTGTCAGAGTCAGTGC+AGG | - | tig0031569:3950-3969 | None:intergenic | 50.0% | |
| TACCCTTAGGTCTCTGATGC+AGG | + | tig0031569:4028-4047 | Msa1447070:intron | 50.0% | |
| CACCTGCATCAGAGACCTAA+GGG | - | tig0031569:4033-4052 | None:intergenic | 50.0% | |
| TCACCTGCATCAGAGACCTA+AGG | - | tig0031569:4034-4053 | None:intergenic | 50.0% | |
| GTCTCTGATGCAGGTGAACA+GGG | + | tig0031569:4037-4056 | Msa1447070:intron | 50.0% | |
| GCAGGTGAACAGGGAAAAAG+AGG | + | tig0031569:4046-4065 | Msa1447070:intron | 50.0% | |
| GCCAATATGAGACTGCCACA+TGG | + | tig0031569:4094-4113 | Msa1447070:intron | 50.0% | |
| AGACTGCCACATGGTCAAAG+TGG | + | tig0031569:4103-4122 | Msa1447070:intron | 50.0% | |
| GTAGGTCCACTTTGACCATG+TGG | - | tig0031569:4112-4131 | None:intergenic | 50.0% | |
| AAACTTGGTTCAGGGCAAGG+AGG | - | tig0031569:5134-5153 | None:intergenic | 50.0% | |
| AGTTTCTCGCACGCCCTATT+CGG | + | tig0031569:5377-5396 | Msa1447070:intron | 50.0% | |
| CTCACACACCCTTTGCAGTT+CGG | - | tig0031569:5477-5496 | None:intergenic | 50.0% | |
| AGCACCAACAAGCCTTCCAT+TGG | - | tig0031569:5644-5663 | None:intergenic | 50.0% | |
| TCAGTGTCAGAGTCAGTGCA+GGG | - | tig0031569:3949-3968 | None:intergenic | 50.0% | |
| TTCAGTGTCAGAGTCAGTGC+AGG | - | tig0031569:3950-3969 | None:intergenic | 50.0% | |
| TACCCTTAGGTCTCTGATGC+AGG | + | tig0031569:4028-4047 | Msa1447070:intron | 50.0% | |
| CACCTGCATCAGAGACCTAA+GGG | - | tig0031569:4033-4052 | None:intergenic | 50.0% | |
| TCACCTGCATCAGAGACCTA+AGG | - | tig0031569:4034-4053 | None:intergenic | 50.0% | |
| GTCTCTGATGCAGGTGAACA+GGG | + | tig0031569:4037-4056 | Msa1447070:intron | 50.0% | |
| GCAGGTGAACAGGGAAAAAG+AGG | + | tig0031569:4046-4065 | Msa1447070:intron | 50.0% | |
| GCCAATATGAGACTGCCACA+TGG | + | tig0031569:4094-4113 | Msa1447070:intron | 50.0% | |
| AGACTGCCACATGGTCAAAG+TGG | + | tig0031569:4103-4122 | Msa1447070:intron | 50.0% | |
| GTAGGTCCACTTTGACCATG+TGG | - | tig0031569:4112-4131 | None:intergenic | 50.0% | |
| AAACTTGGTTCAGGGCAAGG+AGG | - | tig0031569:5134-5153 | None:intergenic | 50.0% | |
| AGTTTCTCGCACGCCCTATT+CGG | + | tig0031569:5377-5396 | Msa1447070:intron | 50.0% | |
| CTCACACACCCTTTGCAGTT+CGG | - | tig0031569:5477-5496 | None:intergenic | 50.0% | |
| AGCACCAACAAGCCTTCCAT+TGG | - | tig0031569:5644-5663 | None:intergenic | 50.0% | |
| GGTCTCTGATGCAGGTGAAC+AGG | + | tig0031569:4036-4055 | Msa1447070:intron | 55.0% | |
| GTGCGAGAAACTCACAGGGT+GGG | - | tig0031569:5369-5388 | None:intergenic | 55.0% | |
| GGTCTCTGATGCAGGTGAAC+AGG | + | tig0031569:4036-4055 | Msa1447070:intron | 55.0% | |
| GTGCGAGAAACTCACAGGGT+GGG | - | tig0031569:5369-5388 | None:intergenic | 55.0% | |
| CGTGCGAGAAACTCACAGGG+TGG | - | tig0031569:5370-5389 | None:intergenic | 60.0% | |
| GGGCGTGCGAGAAACTCACA+GGG | - | tig0031569:5373-5392 | None:intergenic | 60.0% | |
| AGGGCGTGCGAGAAACTCAC+AGG | - | tig0031569:5374-5393 | None:intergenic | 60.0% | |
| CGTGCGAGAAACTCACAGGG+TGG | - | tig0031569:5370-5389 | None:intergenic | 60.0% | |
| GGGCGTGCGAGAAACTCACA+GGG | - | tig0031569:5373-5392 | None:intergenic | 60.0% | |
| AGGGCGTGCGAGAAACTCAC+AGG | - | tig0031569:5374-5393 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031569 | gene | 3777 | 5867 | 3777 | ID=Msa1447070;Name=Msa1447070 |
| tig0031569 | mRNA | 3777 | 5867 | 3777 | ID=Msa1447070-mRNA-1;Parent=Msa1447070;Name=Msa1447070-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0|0|0.5|1|1|2|0|80 |
| tig0031569 | exon | 3777 | 3785 | 3777 | ID=Msa1447070-mRNA-1:exon:15728;Parent=Msa1447070-mRNA-1 |
| tig0031569 | exon | 5634 | 5867 | 5634 | ID=Msa1447070-mRNA-1:exon:15729;Parent=Msa1447070-mRNA-1 |
| tig0031569 | CDS | 3777 | 3785 | 3777 | ID=Msa1447070-mRNA-1:cds;Parent=Msa1447070-mRNA-1 |
| tig0031569 | CDS | 5634 | 5867 | 5634 | ID=Msa1447070-mRNA-1:cds;Parent=Msa1447070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
