AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0671640


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0671640 MtrunA17_Chr4g0010991 96.049 329 13 0 1 329 1 329 0.0 656
Msa0671640 MtrunA17_Chr7g0245691 50.151 331 162 2 1 329 1 330 6.85e-117 340
Msa0671640 MtrunA17_Chr7g0245631 48.632 329 166 3 1 329 1 326 2.69e-114 334
Msa0671640 MtrunA17_Chr7g0245641 50.000 330 163 2 1 329 38 366 3.06e-114 335
Msa0671640 MtrunA17_Chr7g0245741 50.152 329 161 3 1 329 1 326 3.07e-114 333
Msa0671640 MtrunA17_Chr7g0245671 49.547 331 163 3 1 329 1 329 3.00e-112 328
Msa0671640 MtrunA17_Chr7g0245731 49.544 329 163 3 1 329 51 376 4.46e-108 320
Msa0671640 MtrunA17_Chr1g0155411 42.105 323 183 2 7 329 7 325 1.65e-96 289
Msa0671640 MtrunA17_Chr1g0155431 41.615 322 184 2 8 329 8 325 4.26e-94 283
Msa0671640 MtrunA17_Chr7g0245711 48.951 286 144 2 44 329 5 288 3.71e-91 273
Msa0671640 MtrunA17_Chr4g0042101 37.870 338 184 7 9 329 25 353 2.95e-68 217
Msa0671640 MtrunA17_Chr4g0048961 35.312 337 203 7 1 328 7 337 4.27e-63 203
Msa0671640 MtrunA17_Chr2g0331211 33.436 326 202 7 8 329 5 319 1.07e-57 189
Msa0671640 MtrunA17_Chr4g0002661 36.716 335 185 12 3 329 8 323 2.84e-51 172
Msa0671640 MtrunA17_Chr8g0364051 36.170 282 169 5 1 279 1 274 9.82e-50 168
Msa0671640 MtrunA17_Chr3g0077231 35.379 277 165 5 4 275 2 269 1.56e-49 167
Msa0671640 MtrunA17_Chr2g0281991 31.792 346 213 8 1 329 1 340 5.33e-49 167
Msa0671640 MtrunA17_Chr3g0077221 35.662 272 161 8 8 274 10 272 8.37e-48 163
Msa0671640 MtrunA17_Chr3g0106111 30.838 334 200 10 8 329 5 319 8.87e-48 163
Msa0671640 MtrunA17_Chr7g0275521 33.043 345 197 9 8 329 7 340 1.49e-47 163
Msa0671640 MtrunA17_Chr5g0423551 31.481 324 210 7 9 329 5 319 1.85e-47 162
Msa0671640 MtrunA17_Chr8g0363831 32.862 283 177 5 1 279 2 275 1.57e-46 160
Msa0671640 MtrunA17_Chr4g0001321 34.154 325 196 9 8 329 17 326 4.52e-46 159
Msa0671640 MtrunA17_Chr4g0039321 33.754 317 187 12 1 308 1 303 6.60e-46 158
Msa0671640 MtrunA17_Chr5g0431311 32.326 331 199 10 8 329 5 319 1.53e-44 154
Msa0671640 MtrunA17_Chr2g0282001 30.321 343 210 9 5 327 4 337 3.84e-44 154
Msa0671640 MtrunA17_Chr2g0291541 31.953 338 205 14 2 329 4 326 1.32e-43 152
Msa0671640 MtrunA17_Chr4g0002961 33.837 331 200 9 3 329 8 323 3.33e-43 151
Msa0671640 MtrunA17_Chr2g0333781 32.407 324 203 9 8 329 20 329 5.10e-42 149
Msa0671640 MtrunA17_Chr4g0039311 33.101 287 177 7 1 282 3 279 9.88e-41 145
Msa0671640 MtrunA17_Chr2g0282011 30.836 347 211 8 1 327 1 338 2.21e-39 142
Msa0671640 MtrunA17_Chr6g0450211 26.978 278 179 9 5 271 52 316 2.13e-19 87.8
Msa0671640 MtrunA17_Chr5g0411071 31.383 188 112 6 8 190 12 187 2.50e-19 86.7
Msa0671640 MtrunA17_Chr3g0080551 36.522 115 66 4 106 216 18 129 1.60e-12 63.9
Msa0671640 MtrunA17_Chr7g0245701 62.162 37 14 0 1 37 1 37 9.30e-11 56.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0671640 AT2G45400.1 50.751 333 155 5 3 329 35 364 2.11e-113 333
Msa0671640 AT2G45400.2 52.482 282 127 4 3 278 35 315 1.49e-100 299
Msa0671640 AT2G45400.3 48.693 306 146 6 32 329 5 307 1.45e-93 281
Msa0671640 AT5G42800.1 41.337 329 189 2 1 329 1 325 8.11e-88 268
Msa0671640 AT2G45400.4 56.364 220 91 2 3 217 35 254 1.30e-83 253
Msa0671640 AT4G35420.1 35.843 332 199 7 1 329 1 321 4.31e-68 216
Msa0671640 AT1G61720.1 36.747 332 191 8 9 329 14 337 3.96e-62 201
Msa0671640 AT4G27250.1 35.088 342 188 9 2 320 7 337 4.33e-57 189
Msa0671640 AT4G27250.2 34.627 335 189 8 2 320 7 327 7.63e-56 185
Msa0671640 AT1G09510.1 35.971 278 166 5 1 274 1 270 1.40e-50 171
Msa0671640 AT2G02400.1 31.420 331 206 11 5 329 3 318 8.48e-50 169
Msa0671640 AT1G51410.1 35.125 279 169 7 4 278 5 275 9.89e-49 166
Msa0671640 AT5G19440.1 33.945 327 195 11 8 327 10 322 2.58e-48 165
Msa0671640 AT1G09480.2 33.435 329 198 8 8 329 8 322 4.19e-48 164
Msa0671640 AT1G09480.1 33.435 329 198 8 8 329 55 369 1.51e-47 164
Msa0671640 AT2G33590.1 34.921 315 176 8 5 309 6 301 1.64e-47 163
Msa0671640 AT5G58490.1 32.647 340 200 10 1 329 2 323 2.57e-47 162
Msa0671640 AT1G66800.1 34.296 277 168 5 1 274 1 266 1.34e-46 160
Msa0671640 AT1G68540.1 31.790 324 209 7 10 329 6 321 2.41e-46 160
Msa0671640 AT1G09490.1 32.727 330 199 8 8 329 8 322 5.42e-46 159
Msa0671640 AT1G15950.3 33.742 326 196 11 8 329 13 322 1.76e-44 155
Msa0671640 AT1G15950.1 33.742 326 196 11 8 329 13 322 1.76e-44 155
Msa0671640 AT1G09500.3 33.333 282 177 6 1 278 1 275 3.22e-44 153
Msa0671640 AT1G09500.1 33.333 282 177 6 1 278 1 275 1.00e-43 153
Msa0671640 AT1G25460.1 30.275 327 208 7 10 329 6 319 1.37e-43 152
Msa0671640 AT1G76470.1 37.864 309 179 8 5 309 4 303 1.61e-43 152
Msa0671640 AT1G15950.2 33.758 314 189 10 8 317 13 311 3.19e-43 152
Msa0671640 AT1G80820.1 33.435 329 201 11 4 329 4 317 1.28e-41 147
Msa0671640 AT2G33600.1 34.416 308 187 7 5 309 6 301 4.61e-41 146
Msa0671640 AT1G15950.6 34.672 274 163 8 8 278 13 273 7.40e-40 141
Msa0671640 AT1G15950.5 34.672 274 163 8 8 278 13 273 1.02e-39 141
Msa0671640 AT1G15950.4 34.672 274 163 8 8 278 13 273 1.58e-39 141
Msa0671640 AT1G80820.2 34.532 278 166 9 4 278 4 268 2.39e-37 135
Msa0671640 AT1G09490.2 29.730 296 187 7 42 329 9 291 9.57e-31 118
Msa0671640 AT1G09500.2 30.705 241 158 5 42 278 6 241 9.78e-29 112
Msa0671640 AT1G68540.2 29.545 220 146 5 113 329 1 214 8.57e-24 97.4
Msa0671640 AT2G23910.1 25.081 307 206 9 9 306 11 302 2.91e-22 95.5
Msa0671640 AT1G15950.7 31.878 229 143 8 105 329 5 224 1.41e-21 92.4
Msa0671640 AT2G23910.3 26.587 252 165 8 9 255 11 247 1.14e-20 90.5
Msa0671640 AT2G23910.2 26.587 252 165 8 9 255 11 247 1.23e-20 90.1
Msa0671640 AT4G30470.1 26.996 263 167 10 1 255 1 246 1.42e-19 87.8
Msa0671640 AT5G14700.1 28.417 278 158 12 1 255 46 305 6.21e-18 84.0
Msa0671640 AT5G14700.2 28.505 214 127 6 1 198 46 249 4.70e-17 80.5

Find 60 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACAGATGAAGGTATATT+AGG 0.198356 4_4:+15390809 None:intergenic
CCTTGTTGGATCTTCTTATT+TGG 0.209176 4_4:-15390936 Msa0671640:CDS
TTTGAGTGTGAAAATGTTAA+TGG 0.229940 4_4:-15390314 Msa0671640:CDS
GTTAGCTTCTTTGATGCTTC+TGG 0.278137 4_4:+15391253 None:intergenic
GTTAGATCACACCATGTTAA+AGG 0.298991 4_4:-15392850 Msa0671640:intron
TATGACTGAAAAGAGTGTTT+TGG 0.313303 4_4:-15390903 Msa0671640:CDS
TTGGTTCTTCCTTTGGTTGT+TGG 0.320036 4_4:-15390845 Msa0671640:CDS
TGTTAGTTTGGTTCTTCCTT+TGG 0.331534 4_4:-15390852 Msa0671640:CDS
ATAGCACTCGCCATGATCTT+TGG 0.336027 4_4:-15390785 Msa0671640:intron
AACTTACTTTGGTATTGTTA+TGG 0.339526 4_4:+15390214 None:intergenic
TGAATTGAAGGTTGTTAGTT+TGG 0.347694 4_4:-15390864 Msa0671640:CDS
CTTCTCTTTACAGCATTGTA+TGG 0.353937 4_4:+15388617 None:intergenic
AAACAGATGAAGGTATATTA+GGG 0.372509 4_4:+15390810 None:intergenic
TGTAAAAGTAGTAACCTTGT+TGG 0.375771 4_4:-15390950 Msa0671640:CDS
TCACCTTTACTTCTGGCTCT+TGG 0.377440 4_4:+15391131 None:intergenic
AGGTATATTAGGGCAAATAA+AGG 0.389280 4_4:+15390820 None:intergenic
CATCCATTGGGTGTGCTAGA+TGG 0.400667 4_4:+15391161 None:intergenic
TGAGATACTTGTATCTATCT+TGG 0.401199 4_4:+15390390 None:intergenic
AACATGCTTTCAAAATTCCT+AGG 0.409374 4_4:+15391086 None:intergenic
ATTTGTGTGACAGGAGCAAC+GGG 0.426382 4_4:-15392934 Msa0671640:CDS
AGAGAAATGGAAAACGATAA+AGG 0.427381 4_4:-15392961 None:intergenic
TTGCTTTGTCAAAGATATCC+AGG 0.443021 4_4:-15390242 Msa0671640:CDS
CAAAACTACTTGAATCATCA+AGG 0.450303 4_4:+15391215 None:intergenic
ATGTGGTGGATGAAGATGTT+TGG 0.476980 4_4:-15390988 Msa0671640:CDS
TGGAAAAGTGAATGAATTGA+AGG 0.484535 4_4:-15390876 Msa0671640:CDS
AAAGGTGCAATTTGTGTGAC+AGG 0.486915 4_4:-15392943 Msa0671640:CDS
TGGCATCATGGCTGATTATG+AGG 0.487871 4_4:-15392906 Msa0671640:CDS
GGTATATTAGGGCAAATAAA+GGG 0.489769 4_4:+15390821 None:intergenic
GAAATACATACCAAAGATCA+TGG 0.501496 4_4:+15390775 None:intergenic
AAAGCAATACAAGGTTGCAT+TGG 0.515168 4_4:-15391190 Msa0671640:CDS
AAACCAAGAGCCAGAAGTAA+AGG 0.517173 4_4:-15391134 Msa0671640:CDS
ACATGCTTTCAAAATTCCTA+GGG 0.520879 4_4:+15391087 None:intergenic
TAAATTTGAACCCAGCATCC+AGG 0.527299 4_4:+15388670 None:intergenic
AGCGTCAAAGATATGTATGA+TGG 0.533471 4_4:-15388642 Msa0671640:CDS
CAACGGGGTATGTGGCATCA+TGG 0.536558 4_4:-15392918 Msa0671640:CDS
GACAGGAGCAACGGGGTATG+TGG 0.543923 4_4:-15392926 Msa0671640:CDS
AGTGCTATATAAACAGATGA+AGG 0.553611 4_4:+15390800 None:intergenic
TTTAACATGGTGTGATCTAA+CGG 0.553917 4_4:+15392852 None:intergenic
CGTTATATATACCTTTAACA+TGG 0.560160 4_4:+15392839 None:intergenic
GGTATTGTTATGGTATACCC+TGG 0.560996 4_4:+15390224 None:intergenic
CAGAAATATAAGTGCACGAG+TGG 0.561375 4_4:+15390337 None:intergenic
AATTTGTGTGACAGGAGCAA+CGG 0.567751 4_4:-15392935 Msa0671640:CDS
CATACAATGCTGTAAAGAGA+AGG 0.570151 4_4:-15388616 Msa0671640:CDS
AGAGCAGTGGAAGGAACCCT+AGG 0.577037 4_4:-15391103 Msa0671640:CDS
TTACACTTCTAGTGCAGCAA+CGG 0.577130 4_4:-15391035 Msa0671640:CDS
GTATCTCACCAACTCATACA+TGG 0.579056 4_4:-15390375 Msa0671640:CDS
TTTCCATCTAGCACACCCAA+TGG 0.583542 4_4:-15391164 Msa0671640:CDS
ATTATGAGGCTTCTTCAACA+TGG 0.593545 4_4:-15392892 Msa0671640:CDS
TTGAATCATCAAGGTCAGCA+TGG 0.593822 4_4:+15391224 None:intergenic
ATAAAGGGACCAACAACCAA+AGG 0.611130 4_4:+15390836 None:intergenic
AGTGTGAAAATGTTAATGGA+AGG 0.611428 4_4:-15390310 Msa0671640:CDS
TGCTTTGTCAAAGATATCCA+GGG 0.611825 4_4:-15390241 Msa0671640:CDS
ATACAATGCTGTAAAGAGAA+GGG 0.620211 4_4:-15388615 Msa0671640:CDS
TGATAAGAATCTTGATGTGG+TGG 0.620407 4_4:-15391002 Msa0671640:CDS
ATGAAATGATATTCTGTCTG+AGG 0.636261 4_4:+15390277 None:intergenic
CCAAATAAGAAGATCCAACA+AGG 0.649216 4_4:+15390936 None:intergenic
TGTGTGCACCATGTATGAGT+TGG 0.669747 4_4:+15390367 None:intergenic
CAATGATAAGAATCTTGATG+TGG 0.698025 4_4:-15391005 Msa0671640:CDS
AACATGGTGTGATCTAACGG+TGG 0.723533 4_4:+15392855 None:intergenic
TTTGTGTGACAGGAGCAACG+GGG 0.846000 4_4:-15392933 Msa0671640:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAAATTTTTTTTATAGTTTT+TGG - chr4_4:15391525-15391544 Msa0671640:intron 10.0%
!! TATAAAAAAAAAAAATTGCA+GGG + chr4_4:15391646-15391665 None:intergenic 10.0%
!!! TCACTTTTATAAATTAAAAA+AGG + chr4_4:15392279-15392298 None:intergenic 10.0%
!!! CAATTTTTTTTTATAGTTTT+TGG + chr4_4:15392361-15392380 None:intergenic 10.0%
!! ATAAATTAGTGAATTATGTA+AGG - chr4_4:15388881-15388900 Msa0671640:intron 15.0%
!! TAAAAATAAATTCTCATACA+AGG + chr4_4:15388991-15389010 None:intergenic 15.0%
!!! TTTTTTCATCTTACAAATAT+TGG - chr4_4:15389229-15389248 Msa0671640:intron 15.0%
!! TTAAAGTAAGAATAAAAAGA+AGG + chr4_4:15389422-15389441 None:intergenic 15.0%
!!! TAAATTATCCAATTTTTTAC+TGG + chr4_4:15389658-15389677 None:intergenic 15.0%
!! TTTATGTCATAATAATCAAT+GGG + chr4_4:15389781-15389800 None:intergenic 15.0%
!!! TTTTATGTCATAATAATCAA+TGG + chr4_4:15389782-15389801 None:intergenic 15.0%
!!! ATATACATTTTTTTTACCTA+AGG - chr4_4:15390828-15390847 Msa0671640:CDS 15.0%
!!! ATATTTTTTTGTGTGTAAAT+CGG + chr4_4:15390946-15390965 None:intergenic 15.0%
!! TAGGCAAAATATTATTAAAT+AGG - chr4_4:15391014-15391033 Msa0671640:CDS 15.0%
!! AGGCAAAATATTATTAAATA+GGG - chr4_4:15391015-15391034 Msa0671640:CDS 15.0%
!! TATATCTCAAATATTAGAAT+TGG + chr4_4:15391088-15391107 None:intergenic 15.0%
!! AAAAAATATGAAACTTACTT+TGG + chr4_4:15391360-15391379 None:intergenic 15.0%
!! CAATGACTTAATTAATATAT+AGG - chr4_4:15391448-15391467 Msa0671640:intron 15.0%
!! TTAATATATAGGCTAAAATA+TGG - chr4_4:15391459-15391478 Msa0671640:intron 15.0%
!! AACTATAAAAAAAATTTGCA+GGG + chr4_4:15391523-15391542 None:intergenic 15.0%
!! AAACTATAAAAAAAATTTGC+AGG + chr4_4:15391524-15391543 None:intergenic 15.0%
!! ACTATAAAAAAAAAATTGCA+GGG + chr4_4:15391584-15391603 None:intergenic 15.0%
!! AACTATAAAAAAAAAATTGC+AGG + chr4_4:15391585-15391604 None:intergenic 15.0%
!! CTATAAAAAAAAAAAATTGC+AGG + chr4_4:15391647-15391666 None:intergenic 15.0%
!! AAAAAAAAACACAAAACTAA+CGG - chr4_4:15391996-15392015 Msa0671640:intron 15.0%
!! AAAAAAAAACACAAAACTAT+TGG + chr4_4:15392127-15392146 None:intergenic 15.0%
!! AAACTATAAAAAAAAATTGC+AGG - chr4_4:15392362-15392381 Msa0671640:intron 15.0%
!! AACTATAAAAAAAAATTGCA+GGG - chr4_4:15392363-15392382 Msa0671640:intron 15.0%
!!! GCAATTTTTTTTATAGTTTT+TGG + chr4_4:15392422-15392441 None:intergenic 15.0%
!! AAAACTATAAAAAAAATTGC+AGG - chr4_4:15392422-15392441 Msa0671640:intron 15.0%
!! AAACTATAAAAAAAATTGCA+GGG - chr4_4:15392423-15392442 Msa0671640:intron 15.0%
!! ATATATATTAGGCTAAAATA+TGG + chr4_4:15392487-15392506 None:intergenic 15.0%
!! TTAGTCATATCATATATATT+AGG + chr4_4:15392498-15392517 None:intergenic 15.0%
!! AAATCTAAATAATGTATCTT+TGG + chr4_4:15392723-15392742 None:intergenic 15.0%
!!! ATATATAACGTTCATTTTCT+TGG - chr4_4:15388734-15388753 Msa0671640:intron 20.0%
!!! TTGCTATTCTTTTGTTTAAT+TGG - chr4_4:15388786-15388805 Msa0671640:intron 20.0%
!! TTTGTTAGTTATCAAAATTG+AGG - chr4_4:15388851-15388870 Msa0671640:intron 20.0%
!!! AGTATCTTTAATTTGTTGTA+GGG + chr4_4:15389398-15389417 None:intergenic 20.0%
!!! TAGTATCTTTAATTTGTTGT+AGG + chr4_4:15389399-15389418 None:intergenic 20.0%
!!! AAATTGGATAATTTAAAGTG+TGG - chr4_4:15389663-15389682 Msa0671640:intron 20.0%
!!! TATTTTTTTGTGTGTAAATC+GGG + chr4_4:15390945-15390964 None:intergenic 20.0%
!! GGCAAAATATTATTAAATAG+GGG - chr4_4:15391016-15391035 Msa0671640:CDS 20.0%
!!! TTTTTTACTAATTTAGACCA+TGG - chr4_4:15391381-15391400 Msa0671640:intron 20.0%
!!! CAAAAACAAAAAATTTTGCA+GGG + chr4_4:15391678-15391697 None:intergenic 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG - chr4_4:15391951-15391970 Msa0671640:intron 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG + chr4_4:15391951-15391970 None:intergenic 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG + chr4_4:15391951-15391970 None:intergenic 20.0%
!!! CAATATTTTTACAAAGTGTA+GGG - chr4_4:15392094-15392113 Msa0671640:intron 20.0%
!!! TTTTAACATAAAGTTAACAG+AGG - chr4_4:15392143-15392162 Msa0671640:intron 20.0%
!! TTTAACATAAAGTTAACAGA+GGG - chr4_4:15392144-15392163 Msa0671640:intron 20.0%
!! CTTTGTAAAAATATTGGTAT+TGG + chr4_4:15391951-15391970 None:intergenic 20.0%
!!! CAAAAACAAAATTTTTTGCA+GGG - chr4_4:15392334-15392353 Msa0671640:intron 20.0%
!!! CGTAGTTTTTAACAAAATTA+TGG - chr4_4:15392671-15392690 Msa0671640:intron 20.0%
!!! AGTTTTTAACAAAATTATGG+TGG - chr4_4:15392674-15392693 Msa0671640:intron 20.0%
!! AAAATAATCACCCAAAAATT+AGG + chr4_4:15392809-15392828 None:intergenic 20.0%
! CGTTATATATACCTTTAACA+TGG + chr4_4:15388724-15388743 None:intergenic 25.0%
! AAATAAATTCTCATACAAGG+TGG + chr4_4:15388988-15389007 None:intergenic 25.0%
! CAAAATATGAATTGAGAGTT+TGG - chr4_4:15389173-15389192 Msa0671640:intron 25.0%
!!! AAACTTTTTGTTTGAGTTTG+AGG + chr4_4:15389318-15389337 None:intergenic 25.0%
!! ATTAGTCTAAGTAAAGATGA+AGG + chr4_4:15389578-15389597 None:intergenic 25.0%
!! AGACTAATATTTGACCATTT+TGG - chr4_4:15389590-15389609 Msa0671640:intron 25.0%
!! TATCTAAGACATTACCAAAA+TGG + chr4_4:15389607-15389626 None:intergenic 25.0%
! TGTATTCTTATTCTCTCTAT+TGG + chr4_4:15389884-15389903 None:intergenic 25.0%
! CATATATGAAAACAAAGTGT+TGG + chr4_4:15390037-15390056 None:intergenic 25.0%
! AATTATAGTAGCAATTCCTT+CGG + chr4_4:15390119-15390138 None:intergenic 25.0%
!!! AGTTTTGAAAAAGCAATACA+AGG - chr4_4:15390361-15390380 Msa0671640:CDS 25.0%
!! AAACAGATGAAGGTATATTA+GGG + chr4_4:15390753-15390772 None:intergenic 25.0%
!! TAAACAGATGAAGGTATATT+AGG + chr4_4:15390754-15390773 None:intergenic 25.0%
!!! TATCCTTTGCTATAAGTTTT+AGG + chr4_4:15391052-15391071 None:intergenic 25.0%
! ATATGTGCTATGTTTATTAC+AGG - chr4_4:15391144-15391163 Msa0671640:CDS 25.0%
! TTTGAGTGTGAAAATGTTAA+TGG - chr4_4:15391246-15391265 Msa0671640:CDS 25.0%
! AACTTACTTTGGTATTGTTA+TGG + chr4_4:15391349-15391368 None:intergenic 25.0%
!!! AGTCTACACAATGTATTTTT+TGG - chr4_4:15391425-15391444 Msa0671640:intron 25.0%
! TATAGGCTAAAATATGGTAT+TGG - chr4_4:15391465-15391484 Msa0671640:intron 25.0%
!! CCAAAAACAAAAAATTTTGC+AGG + chr4_4:15391679-15391698 None:intergenic 25.0%
!!! CCTGCAAAATTTTTTGTTTT+TGG - chr4_4:15391676-15391695 Msa0671640:intron 25.0%
! TGACAAATCATCACATAATT+GGG + chr4_4:15391716-15391735 None:intergenic 25.0%
! TAATGGTTTAAATGTGTCAT+TGG - chr4_4:15391860-15391879 Msa0671640:intron 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG + chr4_4:15392063-15392082 None:intergenic 25.0%
! TTTAACAGAAAGTTAACAGA+AGG + chr4_4:15391978-15391997 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG - chr4_4:15392063-15392082 Msa0671640:intron 25.0%
! CCTACACTTTGTAAAAATAT+TGG + chr4_4:15392096-15392115 None:intergenic 25.0%
!!! CCAATATTTTTACAAAGTGT+AGG - chr4_4:15392093-15392112 Msa0671640:intron 25.0%
!!! AAACACAAAACTATTGGTTT+TGG + chr4_4:15392121-15392140 None:intergenic 25.0%
!!! CAATATTTTTACAAAGTGCA+GGG - chr4_4:15392063-15392082 Msa0671640:intron 25.0%
!!! CACTTTTTTTTGTTTGGAAT+TGG + chr4_4:15392202-15392221 None:intergenic 25.0%
!!! CCTGCAAAAAATTTTGTTTT+TGG + chr4_4:15392336-15392355 None:intergenic 25.0%
!!! CCAAAAACAAAATTTTTTGC+AGG - chr4_4:15392333-15392352 Msa0671640:intron 25.0%
! ATTAGGCTAAAATATGGTAT+TGG + chr4_4:15392481-15392500 None:intergenic 25.0%
! TAATGTATCTTTGGTTAGAT+TGG + chr4_4:15392714-15392733 None:intergenic 25.0%
! AGTTCAATGAAGACAAAAAA+TGG - chr4_4:15392831-15392850 Msa0671640:intron 25.0%
TTTAACATGGTGTGATCTAA+CGG + chr4_4:15388711-15388730 None:intergenic 30.0%
!!! TAAGGAGTTGATGTTTTGTT+TGG - chr4_4:15388899-15388918 Msa0671640:intron 30.0%
!!! AAGGAGTTGATGTTTTGTTT+GGG - chr4_4:15388900-15388919 Msa0671640:intron 30.0%
TGGGATCTTTATAATTGTTG+AGG - chr4_4:15388919-15388938 Msa0671640:intron 30.0%
GGGATCTTTATAATTGTTGA+GGG - chr4_4:15388920-15388939 Msa0671640:intron 30.0%
ATCTTTATAATTGTTGAGGG+AGG - chr4_4:15388923-15388942 Msa0671640:intron 30.0%
TGATGAGAAAAAGAAATGGA+AGG - chr4_4:15388954-15388973 Msa0671640:intron 30.0%
GATGAGAAAAAGAAATGGAA+GGG - chr4_4:15388955-15388974 Msa0671640:intron 30.0%
! TTGTTTGAGTTTGAGGAAAA+GGG + chr4_4:15389311-15389330 None:intergenic 30.0%
! TTTGTTTGAGTTTGAGGAAA+AGG + chr4_4:15389312-15389331 None:intergenic 30.0%
CAAAAAGTTTAAGTGTGAGT+TGG - chr4_4:15389328-15389347 Msa0671640:intron 30.0%
AAAGGGTTTGTCTAACTTTA+TGG - chr4_4:15389364-15389383 Msa0671640:intron 30.0%
GTTTGTCTAACTTTATGGTT+GGG - chr4_4:15389369-15389388 Msa0671640:intron 30.0%
CTACTCAACCAGTAAAAAAT+TGG - chr4_4:15389647-15389666 Msa0671640:intron 30.0%
AAGATGACATGTTTCTTATG+AGG + chr4_4:15390000-15390019 None:intergenic 30.0%
AAGAAACATGTCATCTTATG+TGG - chr4_4:15390003-15390022 Msa0671640:intron 30.0%
ATGTCATCTTATGTGGTTTA+GGG - chr4_4:15390010-15390029 Msa0671640:intron 30.0%
ATTATAGTAGCAATTCCTTC+GGG + chr4_4:15390118-15390137 None:intergenic 30.0%
CAAAACTACTTGAATCATCA+AGG + chr4_4:15390348-15390367 None:intergenic 30.0%
ACATGCTTTCAAAATTCCTA+GGG + chr4_4:15390476-15390495 None:intergenic 30.0%
AACATGCTTTCAAAATTCCT+AGG + chr4_4:15390477-15390496 None:intergenic 30.0%
ATCAAAGACAGTGAAAAAAG+TGG - chr4_4:15390501-15390520 Msa0671640:intron 30.0%
CAATGATAAGAATCTTGATG+TGG - chr4_4:15390555-15390574 Msa0671640:intron 30.0%
TGTAAAAGTAGTAACCTTGT+TGG - chr4_4:15390610-15390629 Msa0671640:intron 30.0%
!!! TATGACTGAAAAGAGTGTTT+TGG - chr4_4:15390657-15390676 Msa0671640:intron 30.0%
TGGAAAAGTGAATGAATTGA+AGG - chr4_4:15390684-15390703 Msa0671640:intron 30.0%
TGAATTGAAGGTTGTTAGTT+TGG - chr4_4:15390696-15390715 Msa0671640:intron 30.0%
GGTATATTAGGGCAAATAAA+GGG + chr4_4:15390742-15390761 None:intergenic 30.0%
AGGTATATTAGGGCAAATAA+AGG + chr4_4:15390743-15390762 None:intergenic 30.0%
AGTGCTATATAAACAGATGA+AGG + chr4_4:15390763-15390782 None:intergenic 30.0%
GAAATACATACCAAAGATCA+TGG + chr4_4:15390788-15390807 None:intergenic 30.0%
!!! TTTTTTTTACCTAAGGTCCT+AGG - chr4_4:15390835-15390854 Msa0671640:CDS 30.0%
GTTCCTAAAACTTATAGCAA+AGG - chr4_4:15391046-15391065 Msa0671640:CDS 30.0%
TGAGATACTTGTATCTATCT+TGG + chr4_4:15391173-15391192 None:intergenic 30.0%
AGTGTGAAAATGTTAATGGA+AGG - chr4_4:15391250-15391269 Msa0671640:CDS 30.0%
ATGAAATGATATTCTGTCTG+AGG + chr4_4:15391286-15391305 None:intergenic 30.0%
CATTGTGTAGACTAATTTGA+CGG + chr4_4:15391418-15391437 None:intergenic 30.0%
GACAAATCATCACATAATTG+GGG + chr4_4:15391715-15391734 None:intergenic 30.0%
GTGACAAATCATCACATAAT+TGG + chr4_4:15391717-15391736 None:intergenic 30.0%
! CAAAATCTGATAAAAGTGCA+GGG + chr4_4:15391887-15391906 None:intergenic 30.0%
!! CTTTTATCAGATTTTGGCAT+TGG - chr4_4:15391891-15391910 Msa0671640:intron 30.0%
!!! CACTTTTTTTTGTTTGGCAT+TGG - chr4_4:15391920-15391939 Msa0671640:intron 30.0%
!! CCAATATTTTTACAAAGTGC+AGG + chr4_4:15392062-15392081 None:intergenic 30.0%
CCTGCACTTTGTAAAAATAT+TGG - chr4_4:15391945-15391964 Msa0671640:intron 30.0%
CCTGCACTTTGTAAAAATAT+TGG + chr4_4:15391945-15391964 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG - chr4_4:15392062-15392081 Msa0671640:intron 30.0%
CCTGCACTTTGTAAAAATAT+TGG + chr4_4:15391945-15391964 None:intergenic 30.0%
!! CCAATATTTTTACAAAGTGC+AGG - chr4_4:15392062-15392081 Msa0671640:intron 30.0%
! TTCCAAACAAAAAAAAGTGC+AGG - chr4_4:15392203-15392222 Msa0671640:intron 30.0%
! TCCAAACAAAAAAAAGTGCA+GGG - chr4_4:15392204-15392223 Msa0671640:intron 30.0%
TGACAAATCATCACATAACT+GGG - chr4_4:15392296-15392315 Msa0671640:intron 30.0%
!!! AAAACTGACCTATTTTTGCA+GGG - chr4_4:15392395-15392414 Msa0671640:intron 30.0%
! ATCATAGAACGTTTTCAACT+TGG + chr4_4:15392569-15392588 None:intergenic 30.0%
! AAAAAGCCTAGCCTAATTTT+TGG - chr4_4:15392795-15392814 Msa0671640:intron 30.0%
! AAAAGCCTAGCCTAATTTTT+GGG - chr4_4:15392796-15392815 Msa0671640:intron 30.0%
ATACAATGCTGTAAAGAGAA+GGG - chr4_4:15392945-15392964 Msa0671640:CDS 30.0%
ATTATGAGGCTTCTTCAACA+TGG - chr4_4:15388668-15388687 Msa0671640:CDS 35.0%
GTTAGATCACACCATGTTAA+AGG - chr4_4:15388710-15388729 Msa0671640:CDS 35.0%
CTAAAGCTAAGAGAGACTTT+AGG - chr4_4:15388820-15388839 Msa0671640:intron 35.0%
TATAATTGTTGAGGGAGGAA+AGG - chr4_4:15388928-15388947 Msa0671640:intron 35.0%
ATAATTGTTGAGGGAGGAAA+GGG - chr4_4:15388929-15388948 Msa0671640:intron 35.0%
GGCTTGATGAGAAAAAGAAA+TGG - chr4_4:15388950-15388969 Msa0671640:intron 35.0%
TAAATTCTCATACAAGGTGG+TGG + chr4_4:15388985-15389004 None:intergenic 35.0%
TTAAGCAGGAAGAAGGAAAA+AGG + chr4_4:15389283-15389302 None:intergenic 35.0%
TTGGACCATATCCTTGAAAA+GGG - chr4_4:15389347-15389366 Msa0671640:intron 35.0%
!! ACAAACCCTTTTCAAGGATA+TGG + chr4_4:15389355-15389374 None:intergenic 35.0%
! AGTTAGACAAACCCTTTTCA+AGG + chr4_4:15389361-15389380 None:intergenic 35.0%
GGTTTGTCTAACTTTATGGT+TGG - chr4_4:15389368-15389387 Msa0671640:intron 35.0%
CATCATCTTTGTGTATTTCC+AGG - chr4_4:15389492-15389511 Msa0671640:intron 35.0%
GTTGAGTAGCATTGCATATA+TGG + chr4_4:15389636-15389655 None:intergenic 35.0%
AAGAGAGTGAAAACTCACTT+GGG - chr4_4:15389903-15389922 Msa0671640:intron 35.0%
ATGACATGTTTCTTATGAGG+TGG + chr4_4:15389997-15390016 None:intergenic 35.0%
CATGTCATCTTATGTGGTTT+AGG - chr4_4:15390009-15390028 Msa0671640:intron 35.0%
CTGTAATGTCCCAATTTCAT+CGG - chr4_4:15390087-15390106 Msa0671640:intron 35.0%
TTATAGTAGCAATTCCTTCG+GGG + chr4_4:15390117-15390136 None:intergenic 35.0%
AAAGCAATACAAGGTTGCAT+TGG - chr4_4:15390370-15390389 Msa0671640:CDS 35.0%
! CTTTTTGTCACCTTTACTTC+TGG + chr4_4:15390439-15390458 None:intergenic 35.0%
TGATAAGAATCTTGATGTGG+TGG - chr4_4:15390558-15390577 Msa0671640:intron 35.0%
CCAAATAAGAAGATCCAACA+AGG + chr4_4:15390627-15390646 None:intergenic 35.0%
CCTTGTTGGATCTTCTTATT+TGG - chr4_4:15390624-15390643 Msa0671640:intron 35.0%
!!! GAAAAGAGTGTTTTGGAGTT+TGG - chr4_4:15390664-15390683 Msa0671640:intron 35.0%
!! TGTTAGTTTGGTTCTTCCTT+TGG - chr4_4:15390708-15390727 Msa0671640:intron 35.0%
!! ACAAGAGCGTTAAAACTCTT+CGG - chr4_4:15390879-15390898 Msa0671640:CDS 35.0%
GAAGAGTTTGTCATCCATTT+GGG - chr4_4:15390901-15390920 Msa0671640:CDS 35.0%
TTGCTTTGTCAAAGATATCC+AGG - chr4_4:15391318-15391337 Msa0671640:intron 35.0%
TGCTTTGTCAAAGATATCCA+GGG - chr4_4:15391319-15391338 Msa0671640:intron 35.0%
!! TTTTTGGTCCCTGCAAAAAT+AGG - chr4_4:15391603-15391622 Msa0671640:intron 35.0%
! TTTTGGTCCCTGCAAAAATA+GGG - chr4_4:15391604-15391623 Msa0671640:intron 35.0%
!!! AAAACTGCCCTATTTTTGCA+GGG + chr4_4:15391614-15391633 None:intergenic 35.0%
!!! TTGTCACTTTTGTGCATATG+TGG - chr4_4:15391730-15391749 Msa0671640:intron 35.0%
! CCAAAATCTGATAAAAGTGC+AGG + chr4_4:15391888-15391907 None:intergenic 35.0%
! CCTGCACTTTTATCAGATTT+TGG - chr4_4:15391885-15391904 Msa0671640:intron 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG - chr4_4:15391914-15391933 Msa0671640:intron 35.0%
! GCCAAACAAAAAAAAGTGCA+GGG + chr4_4:15391918-15391937 None:intergenic 35.0%
! TGCCAAACAAAAAAAAGTGC+AGG + chr4_4:15391919-15391938 None:intergenic 35.0%
!!! TCCCTGCACTTTTTTTTGTT+TGG + chr4_4:15391914-15391933 None:intergenic 35.0%
!! CTTTCATCAGATTTTGGCAT+TGG + chr4_4:15392231-15392250 None:intergenic 35.0%
! CAAAATCTGATGAAAGTGCA+GGG - chr4_4:15392235-15392254 Msa0671640:intron 35.0%
GTGACAAATCATCACATAAC+TGG - chr4_4:15392295-15392314 Msa0671640:intron 35.0%
GACAAATCATCACATAACTG+GGG - chr4_4:15392297-15392316 Msa0671640:intron 35.0%
! CTGCAAAAATAGGTCAGTTT+TGG + chr4_4:15392396-15392415 None:intergenic 35.0%
!!! CAAAACTGACCTATTTTTGC+AGG - chr4_4:15392394-15392413 Msa0671640:intron 35.0%
!! TTTTTGGTCCCTGCAAAAAT+AGG + chr4_4:15391603-15391622 None:intergenic 35.0%
! CAAAACTGACCTATTTTGCA+GGG - chr4_4:15392454-15392473 Msa0671640:intron 35.0%
TGACTTCGACAAAATCATAG+TGG - chr4_4:15392621-15392640 Msa0671640:intron 35.0%
AATCACCCAAAAATTAGGCT+AGG + chr4_4:15392804-15392823 None:intergenic 35.0%
TCTATCATCAAAAAAGCTCC+TGG - chr4_4:15392872-15392891 Msa0671640:CDS 35.0%
AGCGTCAAAGATATGTATGA+TGG - chr4_4:15392918-15392937 Msa0671640:CDS 35.0%
CTTCTCTTTACAGCATTGTA+TGG + chr4_4:15392946-15392965 None:intergenic 35.0%
CATACAATGCTGTAAAGAGA+AGG - chr4_4:15392944-15392963 Msa0671640:CDS 35.0%
! AAAGGTGCAATTTGTGTGAC+AGG - chr4_4:15388617-15388636 Msa0671640:CDS 40.0%
AATTTGTGTGACAGGAGCAA+CGG - chr4_4:15388625-15388644 Msa0671640:CDS 40.0%
! GGCAATTTTAAGCAGGAAGA+AGG + chr4_4:15389290-15389309 None:intergenic 40.0%
! GGAAAAGGGCAATTTTAAGC+AGG + chr4_4:15389297-15389316 None:intergenic 40.0%
GTTGGACCATATCCTTGAAA+AGG - chr4_4:15389346-15389365 Msa0671640:intron 40.0%
TGTCTAACTTTATGGTTGGG+CGG - chr4_4:15389372-15389391 Msa0671640:intron 40.0%
CACAATTTCGTCATTCTTCC+TGG + chr4_4:15389513-15389532 None:intergenic 40.0%
CAAGAGAGTGAAAACTCACT+TGG - chr4_4:15389902-15389921 Msa0671640:intron 40.0%
GAAAGTTACTAGCCCATTAC+AGG - chr4_4:15389971-15389990 Msa0671640:intron 40.0%
! GTTAGCTTCTTTGATGCTTC+TGG + chr4_4:15390310-15390329 None:intergenic 40.0%
TTGAATCATCAAGGTCAGCA+TGG + chr4_4:15390339-15390358 None:intergenic 40.0%
!!! CTTGGTTTTGCACATCCATT+GGG + chr4_4:15390414-15390433 None:intergenic 40.0%
!!! TCTTGGTTTTGCACATCCAT+TGG + chr4_4:15390415-15390434 None:intergenic 40.0%
AAACCAAGAGCCAGAAGTAA+AGG - chr4_4:15390426-15390445 Msa0671640:intron 40.0%
AAAGGTGACAAAAAGAGCAG+TGG - chr4_4:15390444-15390463 Msa0671640:intron 40.0%
TTACACTTCTAGTGCAGCAA+CGG - chr4_4:15390525-15390544 Msa0671640:intron 40.0%
!! ATGTGGTGGATGAAGATGTT+TGG - chr4_4:15390572-15390591 Msa0671640:intron 40.0%
! TTGGTTCTTCCTTTGGTTGT+TGG - chr4_4:15390715-15390734 Msa0671640:intron 40.0%
ATAAAGGGACCAACAACCAA+AGG + chr4_4:15390727-15390746 None:intergenic 40.0%
GGAAGAGTTTGTCATCCATT+TGG - chr4_4:15390900-15390919 Msa0671640:CDS 40.0%
GTATCTCACCAACTCATACA+TGG - chr4_4:15391185-15391204 Msa0671640:CDS 40.0%
CAGAAATATAAGTGCACGAG+TGG + chr4_4:15391226-15391245 None:intergenic 40.0%
GGTATTGTTATGGTATACCC+TGG + chr4_4:15391339-15391358 None:intergenic 40.0%
TGACGGAGTTTACAATTCCA+TGG + chr4_4:15391401-15391420 None:intergenic 40.0%
!! CAAAACTGGCCTATTTTGCA+GGG + chr4_4:15391492-15391511 None:intergenic 40.0%
!! TTTTTGGTCGCTGCAAATAC+AGG - chr4_4:15391541-15391560 Msa0671640:intron 40.0%
GCAGGGACTAAAACTAAAAC+TGG + chr4_4:15391567-15391586 None:intergenic 40.0%
!!! CAAAACTGCCCTATTTTTGC+AGG + chr4_4:15391615-15391634 None:intergenic 40.0%
! CTGCAAAAATAGGGCAGTTT+TGG - chr4_4:15391613-15391632 Msa0671640:intron 40.0%
TCATCACATAATTGGGGTCA+TGG + chr4_4:15391709-15391728 None:intergenic 40.0%
! CCTGCACTTTCATCAGATTT+TGG + chr4_4:15392237-15392256 None:intergenic 40.0%
! CCAAAATCTGATGAAAGTGC+AGG - chr4_4:15392234-15392253 Msa0671640:intron 40.0%
! CCTGCAAAATAGGTCAGTTT+TGG + chr4_4:15392456-15392475 None:intergenic 40.0%
! CCAAAACTGACCTATTTTGC+AGG - chr4_4:15392453-15392472 Msa0671640:intron 40.0%
TAAATTTGAACCCAGCATCC+AGG + chr4_4:15392893-15392912 None:intergenic 40.0%
ATTTGTGTGACAGGAGCAAC+GGG - chr4_4:15388626-15388645 Msa0671640:CDS 45.0%
TGGCATCATGGCTGATTATG+AGG - chr4_4:15388654-15388673 Msa0671640:CDS 45.0%
AACATGGTGTGATCTAACGG+TGG + chr4_4:15388708-15388727 None:intergenic 45.0%
! AAAACTCACTTGGGTTGTCC+TGG - chr4_4:15389912-15389931 Msa0671640:intron 45.0%
!! GTGGTATTGGCTTGTGATCT+GGG - chr4_4:15389934-15389953 Msa0671640:intron 45.0%
CTTATGAGGTGGCCTGTAAT+GGG + chr4_4:15389986-15390005 None:intergenic 45.0%
TCTTATGAGGTGGCCTGTAA+TGG + chr4_4:15389987-15390006 None:intergenic 45.0%
TTTCCATCTAGCACACCCAA+TGG - chr4_4:15390396-15390415 Msa0671640:CDS 45.0%
!! TCACCTTTACTTCTGGCTCT+TGG + chr4_4:15390432-15390451 None:intergenic 45.0%
GTGACAAAAAGAGCAGTGGA+AGG - chr4_4:15390448-15390467 Msa0671640:intron 45.0%
ATAGCACTCGCCATGATCTT+TGG - chr4_4:15390775-15390794 Msa0671640:intron 45.0%
TCAAGACTAGGTTCGAACCT+AGG + chr4_4:15390855-15390874 None:intergenic 45.0%
GCTCTTGTATGCTCAAGACT+AGG + chr4_4:15390867-15390886 None:intergenic 45.0%
TGTGTGCACCATGTATGAGT+TGG + chr4_4:15391196-15391215 None:intergenic 45.0%
!! GGTATTGGTCCCTGCAAAAT+AGG - chr4_4:15391480-15391499 Msa0671640:intron 45.0%
!! CCAAAACTGGCCTATTTTGC+AGG + chr4_4:15391493-15391512 None:intergenic 45.0%
! CCTGCAAAATAGGCCAGTTT+TGG - chr4_4:15391490-15391509 Msa0671640:intron 45.0%
GCAGGGACTAAAACCAAAAC+TGG + chr4_4:15392380-15392399 None:intergenic 45.0%
! AAAACTAACGGAGTGCCATG+TGG - chr4_4:15392008-15392027 Msa0671640:intron 45.0%
!! ATATTGGTATTGGTGCCACG+TGG + chr4_4:15392049-15392068 None:intergenic 45.0%
ATCATCACATAACTGGGGTC+AGG - chr4_4:15392302-15392321 Msa0671640:intron 45.0%
TCATCACATAACTGGGGTCA+GGG - chr4_4:15392303-15392322 Msa0671640:intron 45.0%
!! GGTATTGGTCCCTGCAAAAT+AGG + chr4_4:15391480-15391499 None:intergenic 45.0%
TCAAAAAAGCTCCTGGATGC+TGG - chr4_4:15392879-15392898 Msa0671640:CDS 45.0%
CAAAAAAGCTCCTGGATGCT+GGG - chr4_4:15392880-15392899 Msa0671640:CDS 45.0%
!!! TTTATTTCTTTATTTATTAT+AGG - chr4_4:15390995-15391014 Msa0671640:CDS 5.0%
!!! AATTTTTTTTTTATAGTTTT+TGG - chr4_4:15391587-15391606 Msa0671640:intron 5.0%
!!! TTTTTTTTTTTTATAGTTTT+TGG - chr4_4:15391651-15391670 Msa0671640:intron 5.0%
!!! ATACAATAATAATTTTTTAA+TGG - chr4_4:15391843-15391862 Msa0671640:intron 5.0%
TTTGTGTGACAGGAGCAACG+GGG - chr4_4:15388627-15388646 Msa0671640:CDS 50.0%
! TTGGGTTGTCCTGGTGGTAT+TGG - chr4_4:15389921-15389940 Msa0671640:intron 50.0%
GATCACAAGCCAATACCACC+AGG + chr4_4:15389933-15389952 None:intergenic 50.0%
!! GGTGGTATTGGCTTGTGATC+TGG - chr4_4:15389933-15389952 Msa0671640:intron 50.0%
CGGGGACATCCGATGAAATT+GGG + chr4_4:15390099-15390118 None:intergenic 50.0%
TCGGGGACATCCGATGAAAT+TGG + chr4_4:15390100-15390119 None:intergenic 50.0%
ATTTCATCGGATGTCCCCGA+AGG - chr4_4:15390100-15390119 Msa0671640:intron 50.0%
CATCCATTGGGTGTGCTAGA+TGG + chr4_4:15390402-15390421 None:intergenic 50.0%
AGGTTCGAACCTAGGACCTT+AGG + chr4_4:15390847-15390866 None:intergenic 50.0%
!! ATCCATTTGGGTTGCGTGTG+CGG - chr4_4:15390913-15390932 Msa0671640:CDS 50.0%
CGTGAAATGATTGGGCCACA+TGG + chr4_4:15392026-15392045 None:intergenic 50.0%
CCACGTGGCGTGAAATGATT+GGG + chr4_4:15392034-15392053 None:intergenic 50.0%
CAACGGGGTATGTGGCATCA+TGG - chr4_4:15388642-15388661 Msa0671640:CDS 55.0%
! ACTCACTTGGGTTGTCCTGG+TGG - chr4_4:15389915-15389934 Msa0671640:intron 55.0%
! GCTTGTGATCTGGGAGTGTG+CGG - chr4_4:15389943-15389962 Msa0671640:intron 55.0%
AGAGCAGTGGAAGGAACCCT+AGG - chr4_4:15390457-15390476 Msa0671640:intron 55.0%
TTCCGCACACGCAACCCAAA+TGG + chr4_4:15390918-15390937 None:intergenic 55.0%
CCCAATCATTTCACGCCACG+TGG - chr4_4:15392031-15392050 Msa0671640:intron 55.0%
GCCACGTGGCGTGAAATGAT+TGG + chr4_4:15392035-15392054 None:intergenic 55.0%
GACAGGAGCAACGGGGTATG+TGG - chr4_4:15388634-15388653 Msa0671640:CDS 60.0%
! TGTGATCTGGGAGTGTGCGG+CGG - chr4_4:15389946-15389965 Msa0671640:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 15388605 15392977 15388605 ID=Msa0671640;Name=Msa0671640
chr4_4 mRNA 15388605 15392977 15388605 ID=Msa0671640-mRNA-1;Parent=Msa0671640;Name=Msa0671640-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|0.75|1|1|4|0|329
chr4_4 exon 15392851 15392977 15392851 ID=Msa0671640-mRNA-1:exon:4689;Parent=Msa0671640-mRNA-1
chr4_4 exon 15390786 15391307 15390786 ID=Msa0671640-mRNA-1:exon:4688;Parent=Msa0671640-mRNA-1
chr4_4 exon 15390221 15390416 15390221 ID=Msa0671640-mRNA-1:exon:4687;Parent=Msa0671640-mRNA-1
chr4_4 exon 15388605 15388749 15388605 ID=Msa0671640-mRNA-1:exon:4686;Parent=Msa0671640-mRNA-1
chr4_4 CDS 15392851 15392977 15392851 ID=Msa0671640-mRNA-1:cds;Parent=Msa0671640-mRNA-1
chr4_4 CDS 15390786 15391307 15390786 ID=Msa0671640-mRNA-1:cds;Parent=Msa0671640-mRNA-1
chr4_4 CDS 15390221 15390416 15390221 ID=Msa0671640-mRNA-1:cds;Parent=Msa0671640-mRNA-1
chr4_4 CDS 15388605 15388749 15388605 ID=Msa0671640-mRNA-1:cds;Parent=Msa0671640-mRNA-1
Gene Sequence

>Msa0671640

ATGGAAAACGATAAAGGTGCAATTTGTGTGACAGGAGCAACGGGGTATGTGGCATCATGGCTGATTATGAGGCTTCTTCAACATGGTTACGCAGTTCATGCCACCGTTAGATCACACCATGTTAAAGAAAAGAAAGACTTGAGCTATCTTACAAACTTACCAGAAGCATCAAAGAAGCTAACGATCTTCCATGCTGACCTTGATGATTCAAGTAGTTTTGAAAAAGCAATACAAGGTTGCATTGGAGTTTTCCATCTAGCACACCCAATGGATGTGCAAAACCAAGAGCCAGAAGTAAAGGTGACAAAAAGAGCAGTGGAAGGAACCCTAGGAATTTTGAAAGCATGTTTAGAATCAAAGACAGTGAAAAAAGTGGTTTACACTTCTAGTGCAGCAACGGTTTTGTTCAATGATAAGAATCTTGATGTGGTGGATGAAGATGTTTGGAGCGATATTGATATTTGTAAAAGTAGTAACCTTGTTGGATCTTCTTATTTGGTGTCTAAAATTATGACTGAAAAGAGTGTTTTGGAGTTTGGAAAAGTGAATGAATTGAAGGTTGTTAGTTTGGTTCTTCCTTTGGTTGTTGGTCCCTTTATTTGCCCTAATATACCTTCATCTGTTTATATAGCACTCGCCATGATCTTTGGAGACCAAGATAGATACAAGTATCTCACCAACTCATACATGGTGCACACAGATGATGCCACTCGTGCACTTATATTTCTGTTTGAGTGTGAAAATGTTAATGGAAGGTTTATTTGTTCCTCAGACAGAATATCATTTCATCAATTGTATGAATTGCTTTGTCAAAGATATCCAGGGTATACCATAACAATACCAAATTCAATGAAGACAAAAAATGGTGATAAAAAGTTTAGTGATCTATCATCAAAAAAGCTCCTGGATGCTGGGTTCAAATTTAAGTACAGCGTCAAAGATATGTATGATGGAGCCATACAATGCTGTAAAGAGAAGGGCATTCTTTAG

Protein sequence

>Msa0671640

MENDKGAICVTGATGYVASWLIMRLLQHGYAVHATVRSHHVKEKKDLSYLTNLPEASKKLTIFHADLDDSSSFEKAIQGCIGVFHLAHPMDVQNQEPEVKVTKRAVEGTLGILKACLESKTVKKVVYTSSAATVLFNDKNLDVVDEDVWSDIDICKSSNLVGSSYLVSKIMTEKSVLEFGKVNELKVVSLVLPLVVGPFICPNIPSSVYIALAMIFGDQDRYKYLTNSYMVHTDDATRALIFLFECENVNGRFICSSDRISFHQLYELLCQRYPGYTITIPNSMKTKNGDKKFSDLSSKKLLDAGFKFKYSVKDMYDGAIQCCKEKGIL*