AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1449800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449800 MtrunA17_Chr8g0387161 73.401 297 63 4 1 284 1 294 3.92e-149 420
Msa1449800 MtrunA17_Chr8g0387141 64.793 338 64 5 1 284 257 593 1.54e-142 414
Msa1449800 MtrunA17_Chr1g0186281 66.250 320 56 4 11 280 261 578 4.34e-140 408
Msa1449800 MtrunA17_Chr1g0186191 63.855 332 56 5 11 280 259 588 4.89e-137 400
Msa1449800 MtrunA17_Chr1g0186261 63.354 322 64 5 11 280 262 581 1.80e-133 391
Msa1449800 MtrunA17_Chr8g0387181 72.222 252 64 2 33 284 380 625 4.85e-123 366
Msa1449800 MtrunA17_Chr8g0387181 62.687 67 13 2 1 55 249 315 8.79e-18 84.0
Msa1449800 MtrunA17_Chr6g0479271 59.545 220 55 5 1 186 82 301 3.53e-70 221
Msa1449800 MtrunA17_Chr6g0479271 82.353 34 6 0 251 284 292 325 8.17e-11 62.0
Msa1449800 MtrunA17_Chr7g0248041 43.363 226 111 1 67 275 353 578 9.29e-58 196
Msa1449800 MtrunA17_Chr8g0348691 46.524 187 95 4 84 266 76 261 3.91e-50 167
Msa1449800 MtrunA17_Chr5g0420461 59.000 100 22 1 87 186 90 170 5.77e-31 115
Msa1449800 MtrunA17_Chr5g0420461 78.947 38 8 0 247 284 157 194 2.23e-12 65.1
Msa1449800 MtrunA17_Chr7g0241681 38.012 171 98 2 83 247 193 361 8.63e-30 116
Msa1449800 MtrunA17_Chr3g0086341 38.378 185 101 5 79 252 144 326 2.63e-26 108
Msa1449800 MtrunA17_Chr7g0241661 30.939 181 117 3 73 247 175 353 7.83e-20 88.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1449800 AT4G11400.2 49.751 201 94 3 82 280 372 567 7.14e-59 198
Msa1449800 AT4G11400.1 49.751 201 94 3 82 280 372 567 7.14e-59 198
Msa1449800 AT2G46040.2 35.106 282 149 9 2 253 268 545 3.89e-40 148
Msa1449800 AT2G46040.3 35.106 282 149 9 2 253 254 531 4.23e-40 147
Msa1449800 AT2G46040.1 35.106 282 149 9 2 253 254 531 4.23e-40 147
Msa1449800 AT5G04110.1 39.752 161 85 5 84 233 361 520 4.69e-27 111
Msa1449800 AT5G04110.3 39.752 161 85 5 84 233 361 520 4.69e-27 111
Msa1449800 AT5G04110.2 39.752 161 85 5 84 233 362 521 4.80e-27 111
Msa1449800 AT1G13880.3 34.225 187 103 6 79 252 124 303 6.51e-21 92.8
Msa1449800 AT1G13880.1 34.225 187 103 6 79 252 123 302 6.73e-21 92.8
Msa1449800 AT1G13880.2 34.225 187 103 6 79 252 133 312 6.76e-21 92.8
Msa1449800 AT2G03470.1 34.783 184 113 4 82 258 121 304 3.83e-20 90.9
Msa1449800 AT2G03470.2 34.783 184 113 4 82 258 120 303 4.15e-20 90.9
Msa1449800 AT5G04110.4 38.621 145 77 5 84 217 361 504 5.73e-20 90.5
Msa1449800 AT1G26580.3 28.372 215 134 4 77 273 62 274 5.84e-19 87.0
Msa1449800 AT1G26580.2 28.372 215 134 4 77 273 128 340 8.49e-19 87.0
Msa1449800 AT1G26580.1 28.372 215 134 4 77 273 128 340 8.49e-19 87.0

Find 222 sgRNAs with CRISPR-Local

Find 514 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGACTCTTCCAAATTATTTA+AGG 0.101946 tig0032705:-29113 Msa1449800:three_prime_UTR
TGAAAATTATTGAGAATTTA+TGG 0.124128 tig0032705:+33186 None:intergenic
CACCCTCACATTTGTTGTTT+TGG 0.143855 tig0032705:+32196 None:intergenic
TGGTGCAAGCCTTATATTTA+AGG 0.166386 tig0032705:+29215 None:intergenic
TTCATTCTCGCAAACGTAAA+AGG 0.167837 tig0032705:-32087 Msa1449800:five_prime_UTR
TTACCATCACCGTTAAAATT+TGG 0.179101 tig0032705:+32172 None:intergenic
CCATTGGGGATTTGATAAAA+TGG 0.180493 tig0032705:-29799 Msa1449800:CDS
GATCATTTGGTGATGGTTTC+GGG 0.181909 tig0032705:-29536 Msa1449800:CDS
TGTCTTCCTTTGAAAGTATA+TGG 0.190078 tig0032705:+29671 None:intergenic
TGTACATTACGCCATGTTAT+TGG 0.207667 tig0032705:+29143 None:intergenic
TTTCTCCTTGTGAAGGAAAA+AGG 0.217482 tig0032705:-32560 Msa1449800:five_prime_UTR
ACATATATCTGTTGTTAAAA+TGG 0.222083 tig0032705:-29375 Msa1449800:exon
CTTCCTTCTTAAAACTCTTT+AGG 0.222790 tig0032705:+34501 None:intergenic
AACGAACATGACTACTAATT+TGG 0.224028 tig0032705:-34458 Msa1449800:intron
TTTATCGGACCGGACTAAAA+TGG 0.225462 tig0032705:-33501 Msa1449800:five_prime_UTR
CAAGAGTGATGGTAATTTAT+TGG 0.225995 tig0032705:-32229 Msa1449800:five_prime_UTR
CCTTTATAATGCTAAATACT+AGG 0.237593 tig0032705:+33456 None:intergenic
GGATCATTTGGTGATGGTTT+CGG 0.238389 tig0032705:-29537 Msa1449800:CDS
TAAATTTCTTAAAACTCTTT+AGG 0.244804 tig0032705:+34575 None:intergenic
AATGTCAGCCTTAAATAATT+TGG 0.246602 tig0032705:+29105 None:intergenic
CCTTCACCAGTATATGTTAA+TGG 0.251035 tig0032705:-32961 Msa1449800:five_prime_UTR
CTACATGTTCTTCCTCAAAA+TGG 0.257376 tig0032705:+29421 None:intergenic
TGATGAAGAAAAGAGATTTA+AGG 0.278264 tig0032705:-29748 Msa1449800:CDS
ACAAGATCTGTTTCAGTTGT+AGG 0.281094 tig0032705:+29939 None:intergenic
CTAATCGATTCGGGCTTTAT+CGG 0.283608 tig0032705:-33516 Msa1449800:five_prime_UTR
GGGTTTGGACCTTAATGTTT+TGG 0.293428 tig0032705:-32484 Msa1449800:five_prime_UTR
CATAATTAAGCACATTGATT+TGG 0.300440 tig0032705:-32259 Msa1449800:five_prime_UTR
GACCAAACTGAAGTTTGAAT+TGG 0.302122 tig0032705:-29835 Msa1449800:CDS
TTCTCTCGCTTCTCTTTCGT+TGG 0.303564 tig0032705:+36024 None:intergenic
GGACTCTGTGATAGTTGATC+TGG 0.306502 tig0032705:-32505 Msa1449800:five_prime_UTR
TAAATACTAGGGTTGTTAAT+TGG 0.318097 tig0032705:+33468 None:intergenic
GAATTTATGGTGGTACTAAC+TGG 0.324037 tig0032705:+33199 None:intergenic
TGATTTGCAAGTACCTTTCT+TGG 0.329744 tig0032705:+34737 None:intergenic
TGAAAGAAACACAAAATAAT+AGG 0.331249 tig0032705:+29248 None:intergenic
CCTAGTATTTAGCATTATAA+AGG 0.331565 tig0032705:-33456 Msa1449800:five_prime_UTR
GCCTCCATCTATGGATTTCA+TGG 0.339718 tig0032705:-29499 Msa1449800:CDS
AGCTATCAAGCCTCCATCTA+TGG 0.341794 tig0032705:-29508 Msa1449800:CDS
GTTAGAAATTTACTATGTTT+AGG 0.342465 tig0032705:+35745 None:intergenic
GATTTGAGAATGAGAGGCTT+TGG 0.343884 tig0032705:+32325 None:intergenic
TACAAGCTGGCTCCGCCCCT+GGG 0.344350 tig0032705:+29313 None:intergenic
CAGATTTGATTAAGCCATCT+TGG 0.345613 tig0032705:-30100 Msa1449800:CDS
TACATGTCTCGGCGTTTGCT+TGG 0.353722 tig0032705:+35993 None:intergenic
ACATGTCTCGGCGTTTGCTT+GGG 0.359959 tig0032705:+35994 None:intergenic
TCACTGAAGCCAAAACATTA+AGG 0.361658 tig0032705:+32475 None:intergenic
ATACAAGCTGGCTCCGCCCC+TGG 0.364838 tig0032705:+29312 None:intergenic
TACAACTCATTGCAGGTGTA+TGG 0.365129 tig0032705:-35275 Msa1449800:intron
CATTATCGGAAATGATAAAC+TGG 0.368928 tig0032705:-32060 Msa1449800:exon
CAAGAGGAGAATTGTATTAG+AGG 0.371040 tig0032705:-32643 Msa1449800:five_prime_UTR
GACTATGAGGAAGTTGAGTT+TGG 0.371247 tig0032705:-29558 Msa1449800:CDS
ACTCACATTTCATCAACATT+AGG 0.371368 tig0032705:+35169 None:intergenic
AATGGTTAGGCACACAAGTA+TGG 0.372435 tig0032705:-29983 Msa1449800:CDS
TGACTTGACCTAATCGATTC+GGG 0.372470 tig0032705:-33525 Msa1449800:five_prime_UTR
GTTCAATGTGTGCAACTTAA+CGG 0.374703 tig0032705:+29174 None:intergenic
TTTATTGCGTGCTCCTTCCT+TGG 0.375724 tig0032705:-29349 Msa1449800:three_prime_UTR
GACATACCATTAACATATAC+TGG 0.380697 tig0032705:+32955 None:intergenic
TACTTGTGTGCCTAACCATT+TGG 0.380699 tig0032705:+29986 None:intergenic
CTCTAATACAATTCTCCTCT+TGG 0.380788 tig0032705:+32644 None:intergenic
TTTACTAAATTTCATGCAAA+TGG 0.388491 tig0032705:-32743 Msa1449800:five_prime_UTR
CGATAAAGCCCGAATCGATT+AGG 0.389195 tig0032705:+33517 None:intergenic
GTCTCCTTCGATGGGTTTGT+TGG 0.389748 tig0032705:-35214 Msa1449800:five_prime_UTR
GAAGTTGAGTTTGGATCATT+TGG 0.390652 tig0032705:-29549 Msa1449800:CDS
CCCATCGAAGGAGACTTATA+AGG 0.393554 tig0032705:+35222 None:intergenic
TTGGAGGCGCTGCCAACCCC+AGG 0.394610 tig0032705:-29330 Msa1449800:three_prime_UTR
TTTGATGATGACCCATTGTT+TGG 0.394625 tig0032705:+31923 None:intergenic
TTGACTTGACCTAATCGATT+CGG 0.400483 tig0032705:-33526 Msa1449800:five_prime_UTR
GGCGGAGCCAGCTTGTATCC+AGG 0.400777 tig0032705:-29307 Msa1449800:three_prime_UTR
TCTGCAGAAACGACGGCATC+TGG 0.402636 tig0032705:+30119 None:intergenic
ACCCAATTCAAACTTCAGTT+TGG 0.406126 tig0032705:+29833 None:intergenic
TGTGATAGTTGATCTGGGTT+TGG 0.407331 tig0032705:-32499 Msa1449800:five_prime_UTR
AAATAATAGGTGTAAATCAA+TGG 0.407841 tig0032705:+29261 None:intergenic
TTATACTCCTCAGGATCAAA+TGG 0.411508 tig0032705:+32016 None:intergenic
CATTGGGGATTTGATAAAAT+GGG 0.415280 tig0032705:-29798 Msa1449800:CDS
AAAGAAGGGGAATGAAATAA+AGG 0.421487 tig0032705:-33376 Msa1449800:intron
AAACTACACCAGTCCATTGC+GGG 0.425596 tig0032705:+30021 None:intergenic
ACGTAAAAGGGAATCATTAT+CGG 0.428409 tig0032705:-32074 Msa1449800:five_prime_UTR
GGTGCAAGCCTTATATTTAA+GGG 0.429749 tig0032705:+29216 None:intergenic
TGAGGATCAGCACTATCAAC+AGG 0.430312 tig0032705:+32701 None:intergenic
AACTCACATTGCATAACATT+AGG 0.432591 tig0032705:+34548 None:intergenic
TCCTTATAAGTCTCCTTCGA+TGG 0.435071 tig0032705:-35223 Msa1449800:five_prime_UTR
GCTGGCTCCGCCCCTGGGGT+TGG 0.435495 tig0032705:+29318 None:intergenic
TCATTGCAGTGTGAAGAGAT+AGG 0.436154 tig0032705:+33131 None:intergenic
TTCCTTTGAAAGTATATGGA+TGG 0.441539 tig0032705:+29675 None:intergenic
CACTCCATGAAATCCATAGA+TGG 0.442549 tig0032705:+29495 None:intergenic
TTTGATCCTGAGGAGTATAA+AGG 0.444102 tig0032705:-32013 Msa1449800:CDS
ACCAAACTGAAGTTTGAATT+GGG 0.446444 tig0032705:-29834 Msa1449800:CDS
AGATTTGATTAAGCCATCTT+GGG 0.447011 tig0032705:-30099 Msa1449800:CDS
AGTTGAACCCACGACATTGC+AGG 0.450458 tig0032705:-34682 Msa1449800:intron
GACTTCATATTGCTGCAAAC+AGG 0.450773 tig0032705:-29857 Msa1449800:CDS
AAAACTCTTTAGGTGTCCCT+TGG 0.452945 tig0032705:+34511 None:intergenic
ACACCGAGCATCACCGGCTC+AGG 0.456593 tig0032705:+32610 None:intergenic
CAGCCTCCTTTATACTCCTC+AGG 0.457410 tig0032705:+32007 None:intergenic
TTATCGGACCGGACTAAAAT+GGG 0.458596 tig0032705:-33500 Msa1449800:five_prime_UTR
TCTCTCGCTTCTCTTTCGTT+GGG 0.460316 tig0032705:+36025 None:intergenic
AGTCACAAGTTCATGGCAAA+CGG 0.460752 tig0032705:-32797 Msa1449800:five_prime_UTR
CAACTGAAACAGATCTTGTT+GGG 0.465328 tig0032705:-29935 Msa1449800:CDS
TCCTTCACAAGGAGAAAAGT+TGG 0.465485 tig0032705:+32566 None:intergenic
CCTCTCATTCTCAAATCTAA+AGG 0.469105 tig0032705:-32319 Msa1449800:five_prime_UTR
CTTTATAATGCTAAATACTA+GGG 0.469959 tig0032705:+33457 None:intergenic
GGGTTGTTAATTGGTGGGCC+AGG 0.470782 tig0032705:+33477 None:intergenic
ACAACTGAAACAGATCTTGT+TGG 0.471432 tig0032705:-29936 Msa1449800:CDS
ATTGCGTGCTCCTTCCTTGG+AGG 0.472945 tig0032705:-29346 Msa1449800:three_prime_UTR
AATAATAGGTGTAAATCAAT+GGG 0.473255 tig0032705:+29262 None:intergenic
GGGCTCACCAGGGTCAGGGC+AGG 0.474351 tig0032705:-34779 Msa1449800:intron
GGTGTAAATCAATGGGTTGA+GGG 0.476630 tig0032705:+29269 None:intergenic
TCATTCTCGCAAACGTAAAA+GGG 0.477895 tig0032705:-32086 Msa1449800:five_prime_UTR
AGTAGTGAGTCACAAGTTCA+TGG 0.478834 tig0032705:-32804 Msa1449800:five_prime_UTR
CTGAGGAGTATAAAGGAGGC+TGG 0.479138 tig0032705:-32006 Msa1449800:CDS
TGCCAGCATGTGGACCTCTT+CGG 0.479346 tig0032705:+34710 None:intergenic
CGTGAAAAGCTTGTTTCTGT+AGG 0.481232 tig0032705:-30065 Msa1449800:CDS
GCGGAAGTCCCGCAATGGAC+TGG 0.484951 tig0032705:-30029 Msa1449800:CDS
TGGGGTTGGCAGCGCCTCCA+AGG 0.488786 tig0032705:+29332 None:intergenic
TCCATTGCGGGACTTCCGCT+TGG 0.488954 tig0032705:+30033 None:intergenic
CCTTATAAGTCTCCTTCGAT+GGG 0.489289 tig0032705:-35222 Msa1449800:five_prime_UTR
TAGTTGCCAGCTAGAGGTCT+TGG 0.491651 tig0032705:-33062 Msa1449800:five_prime_UTR
GACTCTGTGATAGTTGATCT+GGG 0.491869 tig0032705:-32504 Msa1449800:five_prime_UTR
AGGCCTGAGCCGGTGATGCT+CGG 0.501839 tig0032705:-32613 Msa1449800:five_prime_UTR
GTCACAAGTTCATGGCAAAC+GGG 0.502162 tig0032705:-32796 Msa1449800:five_prime_UTR
ATGTGCTTAATTATGTTACA+TGG 0.503262 tig0032705:+32267 None:intergenic
AGGTGTAAATCAATGGGTTG+AGG 0.504606 tig0032705:+29268 None:intergenic
GACTTATAAGGATAAACATC+AGG 0.505538 tig0032705:+35234 None:intergenic
CAGGGTCAGGGCAGGCCTCA+AGG 0.505904 tig0032705:-34771 Msa1449800:five_prime_UTR
TTTATGAGAGGGACTCCAAA+TGG 0.506102 tig0032705:-30001 Msa1449800:CDS
GAAGTTCAGGGTTCAAACGC+TGG 0.506244 tig0032705:-34482 Msa1449800:five_prime_UTR
GAGAGGGACTCCAAATGGTT+AGG 0.506452 tig0032705:-29996 Msa1449800:CDS
GGCGCTGCCAACCCCAGGGG+CGG 0.508973 tig0032705:-29325 Msa1449800:three_prime_UTR
TCCTTTGAAAGTATATGGAT+GGG 0.510514 tig0032705:+29676 None:intergenic
AGAGGTCCACATGCTGGCAA+TGG 0.510760 tig0032705:-34706 Msa1449800:five_prime_UTR
AAGAGATTTAAGGATGCGAT+GGG 0.512153 tig0032705:-29738 Msa1449800:CDS
GACTGTTGACAGCGACTATG+AGG 0.512319 tig0032705:-29571 Msa1449800:CDS
CTCCGAAGAGGTCCACATGC+TGG 0.515248 tig0032705:-34712 Msa1449800:five_prime_UTR
GAGGTCCACATGCTGGCAAT+GGG 0.516119 tig0032705:-34705 Msa1449800:five_prime_UTR
GCGAAGAAGTTTCACTTCGA+TGG 0.516591 tig0032705:-29776 Msa1449800:CDS
AAGTGTAGCTGCAATGTTCA+AGG 0.516681 tig0032705:-29897 Msa1449800:CDS
GAGTTTGGATCATTTGGTGA+TGG 0.518699 tig0032705:-29543 Msa1449800:CDS
GCACAGTAGATGTGAGCTAC+TGG 0.519260 tig0032705:+36074 None:intergenic
GCGGAGCCAGCTTGTATCCA+GGG 0.519414 tig0032705:-29306 Msa1449800:three_prime_UTR
TGACTGACACCGAGCATCAC+CGG 0.520466 tig0032705:+32604 None:intergenic
ATCTGAGTGATTTCGAAGGT+TGG 0.523296 tig0032705:-32434 Msa1449800:five_prime_UTR
TACTAGGGTTGTTAATTGGT+GGG 0.524405 tig0032705:+33472 None:intergenic
CAAGTACCTTTCTTGGCGCT+CGG 0.524541 tig0032705:+34744 None:intergenic
ATACTAGGGTTGTTAATTGG+TGG 0.527020 tig0032705:+33471 None:intergenic
CTATCAGAATCGAGTGACTC+AGG 0.527715 tig0032705:-29595 Msa1449800:CDS
CAGTATCGAGAAAAGGTTGT+GGG 0.527993 tig0032705:-32526 Msa1449800:five_prime_UTR
GTTGGCAGCGCCTCCAAGGA+AGG 0.531784 tig0032705:+29336 None:intergenic
ATAAATTACCATCACTCTTG+TGG 0.532243 tig0032705:+32232 None:intergenic
TTGGCGCTCGGCGAGCCTTG+AGG 0.534027 tig0032705:+34756 None:intergenic
TTGACTCACCTGCAATGTCG+TGG 0.537718 tig0032705:+34674 None:intergenic
GGCTCGCCGAGCGCCAAGAA+AGG 0.538459 tig0032705:-34750 Msa1449800:five_prime_UTR
TGGAGGCGCTGCCAACCCCA+GGG 0.539733 tig0032705:-29329 Msa1449800:three_prime_UTR
AGCATGCAGAACCAAACAAT+GGG 0.540970 tig0032705:-31934 Msa1449800:CDS
AAAGAGATTTAAGGATGCGA+TGG 0.541017 tig0032705:-29739 Msa1449800:CDS
CCTTTAGATTTGAGAATGAG+AGG 0.541549 tig0032705:+32319 None:intergenic
ACCCATCCATATACTTTCAA+AGG 0.543482 tig0032705:-29677 Msa1449800:CDS
GTGTAAATCAATGGGTTGAG+GGG 0.544115 tig0032705:+29270 None:intergenic
GGACCGGACTAAAATGGGCC+TGG 0.545467 tig0032705:-33495 Msa1449800:five_prime_UTR
TATACTCCTCAGGATCAAAT+GGG 0.549641 tig0032705:+32017 None:intergenic
ATGTATTAGTTGCCAGCTAG+AGG 0.550525 tig0032705:-33068 Msa1449800:five_prime_UTR
TGCATCCCCTGGATACAAGC+TGG 0.551479 tig0032705:+29300 None:intergenic
AAACAATGGGTCATCATCAA+AGG 0.556398 tig0032705:-31921 Msa1449800:intron
CATATACAAAAGTACAAGCT+AGG 0.558557 tig0032705:-32885 Msa1449800:five_prime_UTR
CGATTCGGGCTTTATCGGAC+CGG 0.560470 tig0032705:-33511 Msa1449800:five_prime_UTR
AGGCAATGTGAGGCCTGAGC+CGG 0.560985 tig0032705:-32623 Msa1449800:five_prime_UTR
AATTGATAAAAGAGTATGAA+GGG 0.568202 tig0032705:+33005 None:intergenic
TATGCTGCAGTATCGAGAAA+AGG 0.569272 tig0032705:-32533 Msa1449800:five_prime_UTR
AAAATTCGGCACTGGTGTCA+AGG 0.572645 tig0032705:-32134 Msa1449800:five_prime_UTR
CAGCATGTGGACCTCTTCGG+AGG 0.573637 tig0032705:+34713 None:intergenic
GTGCAAGCCTTATATTTAAG+GGG 0.574747 tig0032705:+29217 None:intergenic
TGAGGAGTATAAAGGAGGCT+GGG 0.575783 tig0032705:-32005 Msa1449800:CDS
CAACTCCCATTGCCAGCATG+TGG 0.576751 tig0032705:+34700 None:intergenic
TGACTCACCTGCAATGTCGT+GGG 0.581096 tig0032705:+34675 None:intergenic
AGCATGTGGACCTCTTCGGA+GGG 0.581761 tig0032705:+34714 None:intergenic
TTTAGTTTCAAGGCGATCAA+GGG 0.581796 tig0032705:+32769 None:intergenic
TTGGTTAACCACAAGAGTGA+TGG 0.581825 tig0032705:-32240 Msa1449800:five_prime_UTR
CATGTCTCGGCGTTTGCTTG+GGG 0.583044 tig0032705:+35995 None:intergenic
ACAAGCTGGCTCCGCCCCTG+GGG 0.583483 tig0032705:+29314 None:intergenic
AGAATGAAATTCAAAAGAAG+CGG 0.584345 tig0032705:+32102 None:intergenic
CGAGAATCATCATCCCAAGA+TGG 0.586176 tig0032705:+30086 None:intergenic
GATTGACCAAGACCTCTAGC+TGG 0.588589 tig0032705:+33056 None:intergenic
AACCAAAACAACAAATGTGA+GGG 0.590681 tig0032705:-32198 Msa1449800:five_prime_UTR
ACATTTCATCAACATTAGGA+TGG 0.594673 tig0032705:+35173 None:intergenic
CCATTAACATATACTGGTGA+AGG 0.594769 tig0032705:+32961 None:intergenic
AAATTGATAAAAGAGTATGA+AGG 0.596513 tig0032705:+33004 None:intergenic
TTTGCAGCATTGAAATTCAA+CGG 0.596905 tig0032705:-33227 Msa1449800:intron
TCCAAGCGGAAGTCCCGCAA+TGG 0.597080 tig0032705:-30034 Msa1449800:CDS
AAAGTGGAGATGATCAATGA+TGG 0.599096 tig0032705:-35799 Msa1449800:five_prime_UTR
CACATTGCATAACATTAGGA+TGG 0.599395 tig0032705:+34552 None:intergenic
GAATTTGATCACAAAACTAG+AGG 0.600009 tig0032705:+32845 None:intergenic
AACATTGCTGTCCAATAACA+TGG 0.600667 tig0032705:-29154 Msa1449800:three_prime_UTR
AAACCAAAACAACAAATGTG+AGG 0.612820 tig0032705:-32199 Msa1449800:five_prime_UTR
AAGCATGCAGAACCAAACAA+TGG 0.615428 tig0032705:-31935 Msa1449800:CDS
GAAACAGATCTTGTTGGGAG+AGG 0.616533 tig0032705:-29930 Msa1449800:CDS
TGCAAGCCTTATATTTAAGG+GGG 0.617619 tig0032705:+29218 None:intergenic
GACTGGTGTAGTTTATGAGA+GGG 0.625917 tig0032705:-30012 Msa1449800:CDS
TGTGACAACAAGGAAATGAA+AGG 0.626119 tig0032705:+33106 None:intergenic
GCTTCGTCAAGTACATGTCT+CGG 0.626335 tig0032705:+35982 None:intergenic
TTGCAAATCACCCTCCGAAG+AGG 0.629278 tig0032705:-34724 Msa1449800:five_prime_UTR
GGACTGGTGTAGTTTATGAG+AGG 0.629860 tig0032705:-30013 Msa1449800:CDS
GGTTACAGATGAGAGAGAGC+TGG 0.633661 tig0032705:+29195 None:intergenic
CTTGTTGGGAGAGGAAGACG+AGG 0.636192 tig0032705:-29921 Msa1449800:CDS
AAAACCAACAAACCCATCGA+AGG 0.637970 tig0032705:+35210 None:intergenic
GCAGTATCGAGAAAAGGTTG+TGG 0.639092 tig0032705:-32527 Msa1449800:five_prime_UTR
TGTAAATCAATGGGTTGAGG+GGG 0.640499 tig0032705:+29271 None:intergenic
AATCAAATCTGCAGAAACGA+CGG 0.640914 tig0032705:+30112 None:intergenic
GAAGGCAAGAGATGTTCTGT+CGG 0.647872 tig0032705:-31963 Msa1449800:CDS
AATACACCCATTTGATCCTG+AGG 0.649632 tig0032705:-32023 Msa1449800:CDS
TGTAGGTCGTCGTTTCCAAG+CGG 0.650107 tig0032705:-30048 Msa1449800:CDS
CGGAGCCAGCTTGTATCCAG+GGG 0.652552 tig0032705:-29305 Msa1449800:three_prime_UTR
TAAACTACACCAGTCCATTG+CGG 0.653393 tig0032705:+30020 None:intergenic
CATTTGGTGATGGTTTCGGG+AGG 0.653419 tig0032705:-29533 Msa1449800:CDS
AAATGGCGATTGTCTTGTCG+AGG 0.655256 tig0032705:-32726 Msa1449800:five_prime_UTR
GATCCTGAGGAGTATAAAGG+AGG 0.656179 tig0032705:-32010 Msa1449800:CDS
AAGGAAGACAAGAAAAGACA+TGG 0.658301 tig0032705:-29658 Msa1449800:CDS
AAATATCTGAGTGATTTCGA+AGG 0.658560 tig0032705:-32438 Msa1449800:five_prime_UTR
GTTGATAACTGATTACAAAG+TGG 0.659668 tig0032705:-35815 Msa1449800:five_prime_UTR
GGTTTGACAGAATCATGCAA+AGG 0.665715 tig0032705:+30140 None:intergenic
GGAGGCGCTGCCAACCCCAG+GGG 0.667660 tig0032705:-29328 Msa1449800:three_prime_UTR
TCCATGAAATCCATAGATGG+AGG 0.670812 tig0032705:+29498 None:intergenic
AGAGATTTAAGGATGCGATG+GGG 0.691782 tig0032705:-29737 Msa1449800:CDS
AAATTATTGAGAATTTATGG+TGG 0.691884 tig0032705:+33189 None:intergenic
ATTGTATTAGAGGCAATGTG+AGG 0.692266 tig0032705:-32633 Msa1449800:five_prime_UTR
AGGTGTATGGAAGATAAGAG+TGG 0.712929 tig0032705:-35262 Msa1449800:five_prime_UTR
TTTGAGTAGACAAAACAGTG+TGG 0.748066 tig0032705:-29448 Msa1449800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATAATGAATTTCA+GGG - tig0032705:30078-30097 Msa1449800:CDS 10.0%
!!! AAGATTTTCTAATTTTAAAA+TGG + tig0032705:30223-30242 None:intergenic 10.0%
!! TATATTTGATAAAAATTAAC+GGG - tig0032705:31386-31405 Msa1449800:intron 10.0%
!!! AAGATTTTGTAATTTTAAAA+CGG + tig0032705:31488-31507 None:intergenic 10.0%
!! AAAAAATAAAAATCAAACTT+GGG + tig0032705:31637-31656 None:intergenic 10.0%
!! AAAAAAATAAAAATCAAACT+TGG + tig0032705:31638-31657 None:intergenic 10.0%
!! CTAATACATAAAAAAAAAAA+TGG + tig0032705:32118-32137 None:intergenic 10.0%
!! TTAATATAATAAAGATATCA+GGG - tig0032705:33555-33574 Msa1449800:intron 10.0%
!!! TTGCATTTTTATTTTTTTAA+AGG - tig0032705:33932-33951 Msa1449800:intron 10.0%
!! AAATAAAAAAAAAATAGAAC+AGG + tig0032705:34479-34498 None:intergenic 10.0%
!!! ATTTTCATTTTTTTTATTAG+GGG - tig0032705:34663-34682 Msa1449800:intron 10.0%
!! AAAAAGATTACAAATTTAGA+GGG + tig0032705:29304-29323 None:intergenic 15.0%
!! AAAAAAGATTACAAATTTAG+AGG + tig0032705:29305-29324 None:intergenic 15.0%
!!! ATTTGTAATCTTTTTGTAAT+TGG - tig0032705:29344-29363 Msa1449800:three_prime_UTR 15.0%
!!! TTTGTAATCTTTTTGTAATT+GGG - tig0032705:29345-29364 Msa1449800:three_prime_UTR 15.0%
!! CAAAAATAAACAAAAACTAA+AGG + tig0032705:29750-29769 None:intergenic 15.0%
!!! GATTTTTAATAATGAATTTC+AGG - tig0032705:30077-30096 Msa1449800:CDS 15.0%
!!! ATTTAAAATGACAATAAACA+AGG + tig0032705:30166-30185 None:intergenic 15.0%
!!! ATTTTTATATTGTCTATACA+AGG - tig0032705:30255-30274 Msa1449800:intron 15.0%
!!! TTTTTTTTTATTGTTTTCCA+AGG - tig0032705:30595-30614 Msa1449800:intron 15.0%
!!! TTTTTTTTATTGTTTTCCAA+GGG - tig0032705:30596-30615 Msa1449800:intron 15.0%
!! TAAATTTCTTAAAACTCTTT+AGG + tig0032705:30625-30644 None:intergenic 15.0%
!!! TTTTTTTTATTGTTTTCCAA+GGG - tig0032705:30596-30615 Msa1449800:intron 15.0%
!!! TTTTGAATAACTTTTTTGAT+AGG + tig0032705:30774-30793 None:intergenic 15.0%
!!! CAAGTCTTATATATTTTAAA+AGG + tig0032705:30896-30915 Msa1449810:CDS 15.0%
!!! CAAAGATTAATATATTTTGT+TGG - tig0032705:31055-31074 Msa1449800:intron 15.0%
!!! TATAATTTAGAATTTGAGTT+GGG + tig0032705:31271-31290 None:intergenic 15.0%
!! ATATTTGATAAAAATTAACG+GGG - tig0032705:31387-31406 Msa1449800:intron 15.0%
!! AAAAATAAAAATCAAACTTG+GGG + tig0032705:31636-31655 None:intergenic 15.0%
!!! TTTATTTTTTTTATCATCGT+AGG - tig0032705:31647-31666 Msa1449800:intron 15.0%
!! ATATTAGGTTAAAATTCAAA+AGG + tig0032705:31933-31952 None:intergenic 15.0%
!! TGAAAATTATTGAGAATTTA+TGG + tig0032705:32014-32033 None:intergenic 15.0%
!!! ATGTTTTGTCAATTTTTTTT+CGG - tig0032705:32526-32545 Msa1449800:five_prime_UTR 15.0%
!! GTTAATATAATAAAGATATC+AGG - tig0032705:33554-33573 Msa1449800:intron 15.0%
!! TAATTTAGAAAATGATTATG+TGG - tig0032705:34522-34541 Msa1449800:five_prime_UTR 15.0%
!!! TTTTCATTTTTTTTATTAGG+GGG - tig0032705:34664-34683 Msa1449800:intron 15.0%
!! GTTATTACATAAAATACATA+GGG + tig0032705:34777-34796 None:intergenic 15.0%
!! AAAAGATTACAAATTTAGAG+GGG + tig0032705:29303-29322 None:intergenic 20.0%
!! GTTAGAAATTTACTATGTTT+AGG + tig0032705:29455-29474 None:intergenic 20.0%
!!! AGTTGTTCATTATTTTCTAA+GGG - tig0032705:30048-30067 Msa1449800:CDS 20.0%
!!! GTTTTTTTTATTGTTTTCCA+AGG - tig0032705:30669-30688 Msa1449800:intron 20.0%
!!! ACGATTTTGTAATTTTAAAC+TGG + tig0032705:30849-30868 None:intergenic 20.0%
!! AATAATGATAAAATCTAACC+TGG + tig0032705:31011-31030 Msa1449810:CDS 20.0%
!!! GTATAATTTAGAATTTGAGT+TGG + tig0032705:31272-31291 None:intergenic 20.0%
!! TATTTGATAAAAATTAACGG+GGG - tig0032705:31388-31407 Msa1449800:intron 20.0%
!! TATTTCCTTAATCAAACTTA+GGG + tig0032705:31600-31619 None:intergenic 20.0%
!! TTTGATTAAGGAAATAGATT+CGG - tig0032705:31604-31623 Msa1449800:intron 20.0%
!! AAAATAAAAATCAAACTTGG+GGG + tig0032705:31635-31654 None:intergenic 20.0%
!! CTTTATAATGCTAAATACTA+GGG + tig0032705:31743-31762 None:intergenic 20.0%
!!! ATGTCAAAAAATCATTTTGT+TGG - tig0032705:31794-31813 Msa1449800:intron 20.0%
!!! TGTCAAAAAATCATTTTGTT+GGG - tig0032705:31795-31814 Msa1449800:intron 20.0%
!! AAATTATTGAGAATTTATGG+TGG + tig0032705:32011-32030 None:intergenic 20.0%
!! CTGCTAATAAAAATATCAAA+TGG - tig0032705:32163-32182 Msa1449800:five_prime_UTR 20.0%
!!! AATTGATAAAAGAGTATGAA+GGG + tig0032705:32195-32214 None:intergenic 20.0%
!!! AAATTGATAAAAGAGTATGA+AGG + tig0032705:32196-32215 None:intergenic 20.0%
!!! TAGTAAAAGTTTTAGTTTCA+AGG + tig0032705:32441-32460 None:intergenic 20.0%
!! TTTACTAAATTTCATGCAAA+TGG - tig0032705:32454-32473 Msa1449800:five_prime_UTR 20.0%
!! AAGAAAAGAGTTTCAAAAAT+TGG - tig0032705:32802-32821 Msa1449800:five_prime_UTR 20.0%
!!! TTATACATGATTTTACACAT+TGG - tig0032705:33324-33343 Msa1449800:intron 20.0%
!!! TGATTTTGAATACTTGATTT+CGG + tig0032705:33968-33987 None:intergenic 20.0%
!! AAAAAAAAAATAGAACAGGA+AGG + tig0032705:34475-34494 None:intergenic 20.0%
!! CGTTATTACATAAAATACAT+AGG + tig0032705:34778-34797 None:intergenic 20.0%
!! CTAAATTATCTATCAAACTA+TGG + tig0032705:34867-34886 None:intergenic 20.0%
!!! ACAAATAAAATTCCATCTTT+TGG + tig0032705:34976-34995 None:intergenic 20.0%
!!! GGAATTTTATTTGTATTATG+TGG - tig0032705:34982-35001 Msa1449800:intron 20.0%
!! ACATATATCTGTTGTTAAAA+TGG - tig0032705:35822-35841 Msa1449800:intron 20.0%
!! AATAATAGGTGTAAATCAAT+GGG + tig0032705:35938-35957 None:intergenic 20.0%
!! AAATAATAGGTGTAAATCAA+TGG + tig0032705:35939-35958 None:intergenic 20.0%
!! TGAAAGAAACACAAAATAAT+AGG + tig0032705:35952-35971 None:intergenic 20.0%
! AGGGAAAAAAATTGATACAA+GGG + tig0032705:29480-29499 None:intergenic 25.0%
! TAAAGGAAGAACATTTCAAT+TGG + tig0032705:29552-29571 None:intergenic 25.0%
! TATAGAATCTACAGTACTAA+AGG + tig0032705:29569-29588 None:intergenic 25.0%
! ATATGTTTCAATTCTATGTG+TGG - tig0032705:29586-29605 Msa1449800:CDS 25.0%
!! GAGTTGTTCATTATTTTCTA+AGG - tig0032705:30047-30066 Msa1449800:CDS 25.0%
!!! ATGTGTAGTTTTATAAAGCT+TGG - tig0032705:31202-31221 Msa1449800:intron 25.0%
!!! TGTGTAGTTTTATAAAGCTT+GGG - tig0032705:31203-31222 Msa1449800:intron 25.0%
! CAAATTCTAAATTATACACG+AGG - tig0032705:31275-31294 Msa1449800:intron 25.0%
! ATTTGATAAAAATTAACGGG+GGG - tig0032705:31389-31408 Msa1449800:intron 25.0%
!! ATTGTCTTTTACCATGTATA+AGG - tig0032705:31528-31547 Msa1449800:intron 25.0%
! ACATATGAAAACCTTATACA+TGG + tig0032705:31542-31561 None:intergenic 25.0%
! CTATTTCCTTAATCAAACTT+AGG + tig0032705:31601-31620 None:intergenic 25.0%
! TAAATACTAGGGTTGTTAAT+TGG + tig0032705:31732-31751 None:intergenic 25.0%
! CCTTTATAATGCTAAATACT+AGG + tig0032705:31744-31763 None:intergenic 25.0%
! CCTAGTATTTAGCATTATAA+AGG - tig0032705:31741-31760 Msa1449800:intron 25.0%
! AAAAAAGTGAGCTGAATATT+AGG + tig0032705:31948-31967 None:intergenic 25.0%
!! TGTACTTTTGTATATGTTGA+TGG + tig0032705:32308-32327 None:intergenic 25.0%
!! TGACAAAACATAGATTTTTG+AGG + tig0032705:32517-32536 None:intergenic 25.0%
! AAGAGTTTCAAAAATTGGAA+TGG - tig0032705:32807-32826 Msa1449800:five_prime_UTR 25.0%
! ATGTGCTTAATTATGTTACA+TGG + tig0032705:32933-32952 None:intergenic 25.0%
!! CATAATTAAGCACATTGATT+TGG - tig0032705:32938-32957 Msa1449800:five_prime_UTR 25.0%
! GGTCAATAATAAAGATATCA+GGG - tig0032705:33576-33595 Msa1449800:intron 25.0%
! ATATAGATACACACATCAAT+TGG + tig0032705:33757-33776 None:intergenic 25.0%
! ATTGATGTGTGTATCTATAT+TGG - tig0032705:33757-33776 Msa1449800:intron 25.0%
! AAGCAAAGAGAAAAAAAAGA+CGG + tig0032705:34041-34060 None:intergenic 25.0%
! TAAATTAGTAATTACAGACG+TGG - tig0032705:34562-34581 Msa1449800:five_prime_UTR 25.0%
! ATTATCTATCAAACTATGGT+TGG + tig0032705:34863-34882 None:intergenic 25.0%
!!! GGTTTTGAATGATTTTTAAC+AGG + tig0032705:35240-35259 None:intergenic 25.0%
! TGATGAAGAAAAGAGATTTA+AGG - tig0032705:35449-35468 Msa1449800:intron 25.0%
! TGACTCTTCCAAATTATTTA+AGG - tig0032705:36084-36103 Msa1449800:five_prime_UTR 25.0%
!! GTTGATAACTGATTACAAAG+TGG - tig0032705:29382-29401 Msa1449800:CDS 30.0%
GAGGGAAAAAAATTGATACA+AGG + tig0032705:29481-29500 None:intergenic 30.0%
!!! AATTTTTTTCCCTCTTTGTG+TGG - tig0032705:29487-29506 Msa1449800:CDS 30.0%
AATGAAATTCCACACAAAGA+GGG + tig0032705:29499-29518 None:intergenic 30.0%
AATTACAGGACATAATCCAT+AGG + tig0032705:29641-29660 None:intergenic 30.0%
! CTTTTATTACAACTCATTGC+AGG - tig0032705:29915-29934 Msa1449800:CDS 30.0%
GACTTATAAGGATAAACATC+AGG + tig0032705:29966-29985 None:intergenic 30.0%
ACATTTCATCAACATTAGGA+TGG + tig0032705:30027-30046 None:intergenic 30.0%
ACTCACATTTCATCAACATT+AGG + tig0032705:30031-30050 None:intergenic 30.0%
!!! CAAGGAAGCATTTTTTTGAT+AGG + tig0032705:30148-30167 None:intergenic 30.0%
CAAACTTAGGCAAATGTATT+AGG + tig0032705:30314-30333 None:intergenic 30.0%
GGTATGCAATAATCAAACTT+AGG + tig0032705:30327-30346 None:intergenic 30.0%
ACATTGCATAACATTAGGAT+GGG + tig0032705:30572-30591 None:intergenic 30.0%
AACTCACATTGCATAACATT+AGG + tig0032705:30577-30596 None:intergenic 30.0%
AACTCACATTGCATAACATT+AGG + tig0032705:30577-30596 None:intergenic 30.0%
!!! ACACCTAAAGAGTTTTAAGA+AGG - tig0032705:30619-30638 Msa1449800:intron 30.0%
CTTCCTTCTTAAAACTCTTT+AGG + tig0032705:30699-30718 None:intergenic 30.0%
!!! AGTTTTAAGAAGGAAGTTCA+GGG - tig0032705:30703-30722 Msa1449800:intron 30.0%
AACGAACATGACTACTAATT+TGG - tig0032705:30739-30758 Msa1449800:intron 30.0%
TGATAAAATCTAACCTGGTT+AGG + tig0032705:31006-31025 Msa1449810:CDS 30.0%
TAACTCAAGCTTATTAAACC+GGG + tig0032705:31246-31265 None:intergenic 30.0%
CTAACTCAAGCTTATTAAAC+CGG + tig0032705:31247-31266 None:intergenic 30.0%
TTTGATAAAAATTAACGGGG+GGG - tig0032705:31390-31409 Msa1449800:intron 30.0%
CAAGATTTGAGAAATGACTT+TGG + tig0032705:31435-31454 None:intergenic 30.0%
! ATTTTGTTGGGTTCAAAGAA+GGG - tig0032705:31807-31826 Msa1449800:intron 30.0%
AAAGAAGGGGAATGAAATAA+AGG - tig0032705:31821-31840 Msa1449800:intron 30.0%
ATCGCGAAAACAAATGATTA+AGG + tig0032705:31899-31918 None:intergenic 30.0%
! TTTGCAGCATTGAAATTCAA+CGG - tig0032705:31970-31989 Msa1449800:CDS 30.0%
GACATACCATTAACATATAC+TGG + tig0032705:32245-32264 None:intergenic 30.0%
! CATATACAAAAGTACAAGCT+AGG - tig0032705:32312-32331 Msa1449800:five_prime_UTR 30.0%
GAATTTGATCACAAAACTAG+AGG + tig0032705:32355-32374 None:intergenic 30.0%
!!! TTTTTTTTCGGTTTACCAAG+AGG - tig0032705:32538-32557 Msa1449800:five_prime_UTR 30.0%
AAATATCTGAGTGATTTCGA+AGG - tig0032705:32759-32778 Msa1449800:five_prime_UTR 30.0%
AGTTTCAAAAATTGGAATGG+TGG - tig0032705:32810-32829 Msa1449800:five_prime_UTR 30.0%
GTTTCAAAAATTGGAATGGT+GGG - tig0032705:32811-32830 Msa1449800:five_prime_UTR 30.0%
! AGCTCTTTTTCTAGATCTAT+TGG + tig0032705:32852-32871 None:intergenic 30.0%
ATAAATTACCATCACTCTTG+TGG + tig0032705:32968-32987 None:intergenic 30.0%
CAAGAGTGATGGTAATTTAT+TGG - tig0032705:32968-32987 Msa1449800:five_prime_UTR 30.0%
AAACCAAAACAACAAATGTG+AGG - tig0032705:32998-33017 Msa1449800:five_prime_UTR 30.0%
AACCAAAACAACAAATGTGA+GGG - tig0032705:32999-33018 Msa1449800:five_prime_UTR 30.0%
TTACCATCACCGTTAAAATT+TGG + tig0032705:33028-33047 None:intergenic 30.0%
GAGGATGACAATGAAAAATT+CGG - tig0032705:33049-33068 Msa1449800:five_prime_UTR 30.0%
ACGTAAAAGGGAATCATTAT+CGG - tig0032705:33123-33142 Msa1449800:five_prime_UTR 30.0%
CATTATCGGAAATGATAAAC+TGG - tig0032705:33137-33156 Msa1449800:five_prime_UTR 30.0%
GGGTCAATAATAAAGATATC+AGG - tig0032705:33575-33594 Msa1449800:intron 30.0%
AGTGCAGTTACAATTCTTAA+TGG + tig0032705:33668-33687 None:intergenic 30.0%
!! CACATCAATTGGTATTGATT+GGG + tig0032705:33746-33765 None:intergenic 30.0%
!! ACACATCAATTGGTATTGAT+TGG + tig0032705:33747-33766 None:intergenic 30.0%
GTGAATTGTGTGATTTAGTT+GGG + tig0032705:33839-33858 None:intergenic 30.0%
TGTGAATTGTGTGATTTAGT+TGG + tig0032705:33840-33859 None:intergenic 30.0%
TATTTACATACCAGTATGCA+CGG + tig0032705:33897-33916 None:intergenic 30.0%
GTATGTAAATATCCTGTCAA+TGG - tig0032705:33906-33925 Msa1449800:intron 30.0%
AAAATGCAAAAACCATTGAC+AGG + tig0032705:33921-33940 None:intergenic 30.0%
AGCAAAGAGAAAAAAAAGAC+GGG + tig0032705:34040-34059 None:intergenic 30.0%
TATGAATGCTACGTAAAAAC+AGG + tig0032705:34070-34089 None:intergenic 30.0%
! TTTTACGTAGCATTCATAGA+AGG - tig0032705:34072-34091 Msa1449800:intron 30.0%
AACTTCAGTAACAACAACAA+TGG + tig0032705:34117-34136 None:intergenic 30.0%
ATTTGATGTTGTAGATGTTG+TGG - tig0032705:34155-34174 Msa1449800:intron 30.0%
AGATTTGATTAAGCCATCTT+GGG - tig0032705:35098-35117 Msa1449800:intron 30.0%
ACCAAACTGAAGTTTGAATT+GGG - tig0032705:35363-35382 Msa1449800:intron 30.0%
CATTGGGGATTTGATAAAAT+GGG - tig0032705:35399-35418 Msa1449800:intron 30.0%
!!! AAAAAGACTTGTTTTGGGAA+GGG + tig0032705:35494-35513 None:intergenic 30.0%
!! GTTCCAAAAAGACTTGTTTT+GGG + tig0032705:35499-35518 None:intergenic 30.0%
!! TGTTCCAAAAAGACTTGTTT+TGG + tig0032705:35500-35519 None:intergenic 30.0%
! TCCTTTGAAAGTATATGGAT+GGG + tig0032705:35524-35543 None:intergenic 30.0%
! TTCCTTTGAAAGTATATGGA+TGG + tig0032705:35525-35544 None:intergenic 30.0%
! TGTCTTCCTTTGAAAGTATA+TGG + tig0032705:35529-35548 None:intergenic 30.0%
! TAATTGGGTTGTTGTGAATC+AGG - tig0032705:29360-29379 Msa1449800:three_prime_UTR 35.0%
AAAGTGGAGATGATCAATGA+TGG - tig0032705:29398-29417 Msa1449800:CDS 35.0%
CAATGAAATTCCACACAAAG+AGG + tig0032705:29500-29519 None:intergenic 35.0%
CAAGTAAGGTACACAATTAC+AGG + tig0032705:29655-29674 None:intergenic 35.0%
GGAAAATGAGCAAACAAGTA+AGG + tig0032705:29669-29688 None:intergenic 35.0%
! TTTGCTCATTTTCCTCAATG+AGG - tig0032705:29675-29694 Msa1449800:CDS 35.0%
AATGCAATTGATCCTCATTG+AGG + tig0032705:29690-29709 None:intergenic 35.0%
CAATGAGGATCAATTGCATT+AGG - tig0032705:29690-29709 Msa1449800:CDS 35.0%
TAACACAACTGTGACTTTAG+AGG - tig0032705:29852-29871 Msa1449800:CDS 35.0%
AACACAACTGTGACTTTAGA+GGG - tig0032705:29853-29872 Msa1449800:CDS 35.0%
TAACAAAGTCTGACCTGATT+AGG + tig0032705:30353-30372 None:intergenic 35.0%
! AGTTTAAGTGAGTTGAGCTT+CGG - tig0032705:30395-30414 Msa1449800:intron 35.0%
! TGATTTGCAAGTACCTTTCT+TGG + tig0032705:30463-30482 None:intergenic 35.0%
CACATTGCATAACATTAGGA+TGG + tig0032705:30573-30592 None:intergenic 35.0%
CACATTGCATAACATTAGGA+TGG + tig0032705:30573-30592 None:intergenic 35.0%
!!! GAGTTTTAAGAAGGAAGTTC+AGG - tig0032705:30702-30721 Msa1449800:intron 35.0%
! ATCCAACACAATGAAAGTGT+TGG + tig0032705:31140-31159 None:intergenic 35.0%
TTCATTGTGTTGGATGTGAA+TGG - tig0032705:31145-31164 Msa1449800:intron 35.0%
CGGTTTAATAAGCTTGAGTT+AGG - tig0032705:31245-31264 Msa1449800:intron 35.0%
CAAACTTAGGGAGATGTATT+TGG + tig0032705:31588-31607 None:intergenic 35.0%
CATCTCCCTAAGTTTGATTA+AGG - tig0032705:31592-31611 Msa1449800:intron 35.0%
! TTGACTTGACCTAATCGATT+CGG - tig0032705:31671-31690 Msa1449800:intron 35.0%
TACTAGGGTTGTTAATTGGT+GGG + tig0032705:31728-31747 None:intergenic 35.0%
ATACTAGGGTTGTTAATTGG+TGG + tig0032705:31729-31748 None:intergenic 35.0%
! CATTTTGTTGGGTTCAAAGA+AGG - tig0032705:31806-31825 Msa1449800:intron 35.0%
! TTTTGTTGGGTTCAAAGAAG+GGG - tig0032705:31808-31827 Msa1449800:intron 35.0%
GAATTTATGGTGGTACTAAC+TGG + tig0032705:32001-32020 None:intergenic 35.0%
TGTGACAACAAGGAAATGAA+AGG + tig0032705:32094-32113 None:intergenic 35.0%
AAAAAATGGCTGTGACAACA+AGG + tig0032705:32104-32123 None:intergenic 35.0%
CCATTAACATATACTGGTGA+AGG + tig0032705:32239-32258 None:intergenic 35.0%
CCTTCACCAGTATATGTTAA+TGG - tig0032705:32236-32255 Msa1449800:five_prime_UTR 35.0%
! TTTAGTTTCAAGGCGATCAA+GGG + tig0032705:32431-32450 None:intergenic 35.0%
!!! TTTTAGTTTCAAGGCGATCA+AGG + tig0032705:32432-32451 None:intergenic 35.0%
CTCTAATACAATTCTCCTCT+TGG + tig0032705:32556-32575 None:intergenic 35.0%
CAAGAGGAGAATTGTATTAG+AGG - tig0032705:32554-32573 Msa1449800:five_prime_UTR 35.0%
ATTGTATTAGAGGCAATGTG+AGG - tig0032705:32564-32583 Msa1449800:five_prime_UTR 35.0%
TTTCTCCTTGTGAAGGAAAA+AGG - tig0032705:32637-32656 Msa1449800:five_prime_UTR 35.0%
TCACTGAAGCCAAAACATTA+AGG + tig0032705:32725-32744 None:intergenic 35.0%
CCTTTAGATTTGAGAATGAG+AGG + tig0032705:32881-32900 None:intergenic 35.0%
CCTCTCATTCTCAAATCTAA+AGG - tig0032705:32878-32897 Msa1449800:five_prime_UTR 35.0%
!!! TGAGGGTGTCCAAATTTTAA+CGG - tig0032705:33016-33035 Msa1449800:five_prime_UTR 35.0%
!! TGTCCAAATTTTAACGGTGA+TGG - tig0032705:33022-33041 Msa1449800:five_prime_UTR 35.0%
!! TTTTAACGGTGATGGTAATG+AGG - tig0032705:33030-33049 Msa1449800:five_prime_UTR 35.0%
TTCATTCTCGCAAACGTAAA+AGG - tig0032705:33110-33129 Msa1449800:five_prime_UTR 35.0%
TCATTCTCGCAAACGTAAAA+GGG - tig0032705:33111-33130 Msa1449800:five_prime_UTR 35.0%
TATACTCCTCAGGATCAAAT+GGG + tig0032705:33183-33202 None:intergenic 35.0%
TTATACTCCTCAGGATCAAA+TGG + tig0032705:33184-33203 None:intergenic 35.0%
! TTTGATCCTGAGGAGTATAA+AGG - tig0032705:33184-33203 Msa1449800:five_prime_UTR 35.0%
!!! CTTTTTTGTTCAGATGCTGA+AGG - tig0032705:33216-33235 Msa1449800:five_prime_UTR 35.0%
!! TTTGATGATGACCCATTGTT+TGG + tig0032705:33277-33296 None:intergenic 35.0%
AAACAATGGGTCATCATCAA+AGG - tig0032705:33276-33295 Msa1449800:intron 35.0%
!! ATGTGAAAACATTCTGGTTC+AGG + tig0032705:33368-33387 None:intergenic 35.0%
CCATTCATGTGAAAACATTC+TGG + tig0032705:33374-33393 None:intergenic 35.0%
! CCAGAATGTTTTCACATGAA+TGG - tig0032705:33371-33390 Msa1449800:intron 35.0%
!! CATGATTTGCATTTTGCTGT+GGG - tig0032705:33788-33807 Msa1449800:intron 35.0%
CTTCAACGGTGATTCAAATT+TGG + tig0032705:33992-34011 None:intergenic 35.0%
TGTTGTTACTGAAGTTGTTG+TGG - tig0032705:34121-34140 Msa1449800:intron 35.0%
CAACAACAACACTGATCTAA+AGG + tig0032705:34199-34218 None:intergenic 35.0%
! CTTTAGATCAGTGTTGTTGT+TGG - tig0032705:34197-34216 Msa1449800:intron 35.0%
AGCTGTTGTAGTTACACATT+TGG - tig0032705:34220-34239 Msa1449800:intron 35.0%
TAAGGAGATGAATCAAGAAG+AGG - tig0032705:34276-34295 Msa1449800:intron 35.0%
AAGAAGAGGTGGAAGATAAA+CGG - tig0032705:34290-34309 Msa1449800:intron 35.0%
CAAAAGAGCAACATTGGAAA+TGG + tig0032705:34426-34445 None:intergenic 35.0%
GTGTTTCAAAAGAGCAACAT+TGG + tig0032705:34432-34451 None:intergenic 35.0%
ATAGAACAGGAAGGATGAAT+GGG + tig0032705:34466-34485 None:intergenic 35.0%
AATAGAACAGGAAGGATGAA+TGG + tig0032705:34467-34486 None:intergenic 35.0%
!!! CAAAAGGTCACTTTTGCAAA+GGG - tig0032705:34620-34639 Msa1449800:intron 35.0%
!!! AAAAGGTCACTTTTGCAAAG+GGG - tig0032705:34621-34640 Msa1449800:intron 35.0%
! CTTTGTCAATGTTGCGATTT+TGG + tig0032705:34690-34709 None:intergenic 35.0%
ATCGCAACATTGACAAAGTT+AGG - tig0032705:34692-34711 Msa1449800:five_prime_UTR 35.0%
TCGCAACATTGACAAAGTTA+GGG - tig0032705:34693-34712 Msa1449800:five_prime_UTR 35.0%
ATAAGCAGTGCATAAGGTTT+AGG + tig0032705:34739-34758 None:intergenic 35.0%
GAACTTGCCATGTTATTGTT+TGG - tig0032705:34801-34820 Msa1449800:intron 35.0%
CAGATCTCCAAACAATAACA+TGG + tig0032705:34811-34830 None:intergenic 35.0%
! ATCTTTTGGATCTTGTCTAC+TGG + tig0032705:34962-34981 None:intergenic 35.0%
AGTAGACAAGATCCAAAAGA+TGG - tig0032705:34961-34980 Msa1449800:intron 35.0%
AATCAAATCTGCAGAAACGA+CGG + tig0032705:35088-35107 None:intergenic 35.0%
CAGATTTGATTAAGCCATCT+TGG - tig0032705:35097-35116 Msa1449800:intron 35.0%
ACAAGATCTGTTTCAGTTGT+AGG + tig0032705:35261-35280 None:intergenic 35.0%
ACAACTGAAACAGATCTTGT+TGG - tig0032705:35261-35280 Msa1449800:five_prime_UTR 35.0%
CAACTGAAACAGATCTTGTT+GGG - tig0032705:35262-35281 Msa1449800:five_prime_UTR 35.0%
GACCAAACTGAAGTTTGAAT+TGG - tig0032705:35362-35381 Msa1449800:intron 35.0%
ACCCAATTCAAACTTCAGTT+TGG + tig0032705:35367-35386 None:intergenic 35.0%
! CCATTTTATCAAATCCCCAA+TGG + tig0032705:35401-35420 None:intergenic 35.0%
CCATTGGGGATTTGATAAAA+TGG - tig0032705:35398-35417 Msa1449800:intron 35.0%
AAAGAGATTTAAGGATGCGA+TGG - tig0032705:35458-35477 Msa1449800:intron 35.0%
AAGAGATTTAAGGATGCGAT+GGG - tig0032705:35459-35478 Msa1449800:intron 35.0%
!!! CAAAAAGACTTGTTTTGGGA+AGG + tig0032705:35495-35514 None:intergenic 35.0%
! CTTCCCAAAACAAGTCTTTT+TGG - tig0032705:35493-35512 Msa1449800:intron 35.0%
ACCCATCCATATACTTTCAA+AGG - tig0032705:35520-35539 Msa1449800:intron 35.0%
AAGGAAGACAAGAAAAGACA+TGG - tig0032705:35539-35558 Msa1449800:intron 35.0%
GAAGTTGAGTTTGGATCATT+TGG - tig0032705:35648-35667 Msa1449800:intron 35.0%
TTTGAGTAGACAAAACAGTG+TGG - tig0032705:35749-35768 Msa1449800:intron 35.0%
CTACATGTTCTTCCTCAAAA+TGG + tig0032705:35779-35798 None:intergenic 35.0%
CTTGAACCCCCTTAAATATA+AGG - tig0032705:35973-35992 Msa1449800:intron 35.0%
! TGCAAGCCTTATATTTAAGG+GGG + tig0032705:35982-36001 None:intergenic 35.0%
! GTGCAAGCCTTATATTTAAG+GGG + tig0032705:35983-36002 None:intergenic 35.0%
! GGTGCAAGCCTTATATTTAA+GGG + tig0032705:35984-36003 None:intergenic 35.0%
! TGGTGCAAGCCTTATATTTA+AGG + tig0032705:35985-36004 None:intergenic 35.0%
GTTCAATGTGTGCAACTTAA+CGG + tig0032705:36026-36045 None:intergenic 35.0%
AACATTGCTGTCCAATAACA+TGG - tig0032705:36043-36062 Msa1449800:five_prime_UTR 35.0%
TGTACATTACGCCATGTTAT+TGG + tig0032705:36057-36076 None:intergenic 35.0%
AAACGTGTGTAAGTTGCAGA+GGG - tig0032705:29770-29789 Msa1449800:CDS 40.0%
TACAACTCATTGCAGGTGTA+TGG - tig0032705:29922-29941 Msa1449800:CDS 40.0%
AGGTGTATGGAAGATAAGAG+TGG - tig0032705:29935-29954 Msa1449800:CDS 40.0%
TCCTTATAAGTCTCCTTCGA+TGG - tig0032705:29974-29993 Msa1449800:CDS 40.0%
CCTTATAAGTCTCCTTCGAT+GGG - tig0032705:29975-29994 Msa1449800:CDS 40.0%
AAAACCAACAAACCCATCGA+AGG + tig0032705:29990-30009 None:intergenic 40.0%
TGAATTTCAGGGTTCAAACC+TGG - tig0032705:30089-30108 Msa1449800:CDS 40.0%
ATTGCATACCTGACCTAATC+AGG - tig0032705:30337-30356 Msa1449800:intron 40.0%
! GTTTAAGTGAGTTGAGCTTC+GGG - tig0032705:30396-30415 Msa1449800:intron 40.0%
! TTTAAGTGAGTTGAGCTTCG+GGG - tig0032705:30397-30416 Msa1449800:intron 40.0%
AAAACTCTTTAGGTGTCCCT+TGG + tig0032705:30615-30634 None:intergenic 40.0%
AAAACTCTTTAGGTGTCCCT+TGG + tig0032705:30615-30634 None:intergenic 40.0%
CAAGCGTAGGAGAATGTATT+GGG + tig0032705:30967-30986 Msa1449810:CDS 40.0%
TCAAGCGTAGGAGAATGTAT+TGG + tig0032705:30968-30987 Msa1449810:CDS 40.0%
AAATCTAACCTGGTTAGGTC+AGG + tig0032705:31001-31020 Msa1449810:CDS 40.0%
AACCAAATGTCGCAATTAGG+CGG + tig0032705:31102-31121 Msa1449810:CDS 40.0%
!! CAACACAATGAAAGTGTTGG+AGG + tig0032705:31137-31156 None:intergenic 40.0%
CTCCAACACTTTCATTGTGT+TGG - tig0032705:31135-31154 Msa1449800:intron 40.0%
ATTGTGTTGGATGTGAATGG+TGG - tig0032705:31148-31167 Msa1449800:intron 40.0%
TTGTGTTGGATGTGAATGGT+GGG - tig0032705:31149-31168 Msa1449800:intron 40.0%
TATAGTCCCACATTGCTTAG+AGG - tig0032705:31173-31192 Msa1449800:intron 40.0%
GCTTATTAAACCGGGTTGTA+AGG + tig0032705:31238-31257 None:intergenic 40.0%
! TGACTTGACCTAATCGATTC+GGG - tig0032705:31672-31691 Msa1449800:intron 40.0%
!! CTAATCGATTCGGGCTTTAT+CGG - tig0032705:31681-31700 Msa1449800:intron 40.0%
TTTATCGGACCGGACTAAAA+TGG - tig0032705:31696-31715 Msa1449800:intron 40.0%
TTATCGGACCGGACTAAAAT+GGG - tig0032705:31697-31716 Msa1449800:intron 40.0%
ATTAAACCCTCCTCTTCTCT+CGG + tig0032705:31859-31878 None:intergenic 40.0%
TCATTGCAGTGTGAAGAGAT+AGG + tig0032705:32069-32088 None:intergenic 40.0%
ATGTATTAGTTGCCAGCTAG+AGG - tig0032705:32129-32148 Msa1449800:five_prime_UTR 40.0%
AGTAGTGAGTCACAAGTTCA+TGG - tig0032705:32393-32412 Msa1449800:five_prime_UTR 40.0%
AGTCACAAGTTCATGGCAAA+CGG - tig0032705:32400-32419 Msa1449800:five_prime_UTR 40.0%
! ACCAACTTTTCTCCTTGTGA+AGG - tig0032705:32630-32649 Msa1449800:five_prime_UTR 40.0%
TCCTTCACAAGGAGAAAAGT+TGG + tig0032705:32634-32653 None:intergenic 40.0%
TCCTTGTGAAGGAAAAAGGA+GGG - tig0032705:32641-32660 Msa1449800:five_prime_UTR 40.0%
! TATGCTGCAGTATCGAGAAA+AGG - tig0032705:32664-32683 Msa1449800:five_prime_UTR 40.0%
! CAGTATCGAGAAAAGGTTGT+GGG - tig0032705:32671-32690 Msa1449800:five_prime_UTR 40.0%
GACTCTGTGATAGTTGATCT+GGG - tig0032705:32693-32712 Msa1449800:five_prime_UTR 40.0%
TGTGATAGTTGATCTGGGTT+TGG - tig0032705:32698-32717 Msa1449800:five_prime_UTR 40.0%
! GGGTTTGGACCTTAATGTTT+TGG - tig0032705:32713-32732 Msa1449800:five_prime_UTR 40.0%
ATCTGAGTGATTTCGAAGGT+TGG - tig0032705:32763-32782 Msa1449800:five_prime_UTR 40.0%
GATTTGAGAATGAGAGGCTT+TGG + tig0032705:32875-32894 None:intergenic 40.0%
TTGGTTAACCACAAGAGTGA+TGG - tig0032705:32957-32976 Msa1449800:five_prime_UTR 40.0%
!!! CACCCTCACATTTGTTGTTT+TGG + tig0032705:33004-33023 None:intergenic 40.0%
GACAATGAAAAATTCGGCAC+TGG - tig0032705:33055-33074 Msa1449800:five_prime_UTR 40.0%
AATACACCCATTTGATCCTG+AGG - tig0032705:33174-33193 Msa1449800:five_prime_UTR 40.0%
AAGCATGCAGAACCAAACAA+TGG - tig0032705:33262-33281 Msa1449800:intron 40.0%
AGCATGCAGAACCAAACAAT+GGG - tig0032705:33263-33282 Msa1449800:intron 40.0%
! CAGTTAGCAAGCTGAGATTT+TGG + tig0032705:33517-33536 None:intergenic 40.0%
TGTAACTGCACTATTGAGCT+TGG - tig0032705:33676-33695 Msa1449800:intron 40.0%
!! GCATGATTTGCATTTTGCTG+TGG - tig0032705:33787-33806 Msa1449800:intron 40.0%
ACACAATTCACATTCTGCTG+CGG - tig0032705:33848-33867 Msa1449800:intron 40.0%
AGTGTACTAGAGCTCTTCAA+CGG + tig0032705:34006-34025 None:intergenic 40.0%
GCTCTAGTACACTATGTGTT+TGG - tig0032705:34013-34032 Msa1449800:intron 40.0%
TGTAGATGTTGTGGAGAAAC+AGG - tig0032705:34164-34183 Msa1449800:intron 40.0%
TAAACGGAAGAAGGTGAAGT+TGG - tig0032705:34306-34325 Msa1449800:intron 40.0%
!!! CTTTTTTGCACCTCTTGTGA+TGG - tig0032705:34383-34402 Msa1449800:intron 40.0%
! CCTTTGCAAAAGTGACCTTT+TGG + tig0032705:34622-34641 None:intergenic 40.0%
!!! CCAAAAGGTCACTTTTGCAA+AGG - tig0032705:34619-34638 Msa1449800:intron 40.0%
TTGCAAAGGGGCTAAAACTT+AGG - tig0032705:34633-34652 Msa1449800:intron 40.0%
TGCAAAGGGGCTAAAACTTA+GGG - tig0032705:34634-34653 Msa1449800:intron 40.0%
CGCAACATTGACAAAGTTAG+GGG - tig0032705:34694-34713 Msa1449800:five_prime_UTR 40.0%
GCAACATTGACAAAGTTAGG+GGG - tig0032705:34695-34714 Msa1449800:five_prime_UTR 40.0%
AGAGTCATAAGCAGTGCATA+AGG + tig0032705:34745-34764 None:intergenic 40.0%
TTATGCACTGCTTATGACTC+TGG - tig0032705:34744-34763 Msa1449800:five_prime_UTR 40.0%
! TCTGAAACTGTCTCCTTTAC+AGG - tig0032705:35023-35042 Msa1449800:intron 40.0%
GGTTTGACAGAATCATGCAA+AGG + tig0032705:35060-35079 None:intergenic 40.0%
!! CGTGAAAAGCTTGTTTCTGT+AGG - tig0032705:35132-35151 Msa1449800:intron 40.0%
TAAACTACACCAGTCCATTG+CGG + tig0032705:35180-35199 None:intergenic 40.0%
GACTGGTGTAGTTTATGAGA+GGG - tig0032705:35185-35204 Msa1449800:five_prime_UTR 40.0%
TTTATGAGAGGGACTCCAAA+TGG - tig0032705:35196-35215 Msa1449800:five_prime_UTR 40.0%
TACTTGTGTGCCTAACCATT+TGG + tig0032705:35214-35233 None:intergenic 40.0%
AATGGTTAGGCACACAAGTA+TGG - tig0032705:35214-35233 Msa1449800:five_prime_UTR 40.0%
AAGTGTAGCTGCAATGTTCA+AGG - tig0032705:35300-35319 Msa1449800:intron 40.0%
GACTTCATATTGCTGCAAAC+AGG - tig0032705:35340-35359 Msa1449800:intron 40.0%
! TGGGTTCTGCATTTTACCAT+TGG - tig0032705:35382-35401 Msa1449800:intron 40.0%
! GGGTTCTGCATTTTACCATT+GGG - tig0032705:35383-35402 Msa1449800:intron 40.0%
! GGTTCTGCATTTTACCATTG+GGG - tig0032705:35384-35403 Msa1449800:intron 40.0%
AGAGATTTAAGGATGCGATG+GGG - tig0032705:35460-35479 Msa1449800:intron 40.0%
GACTATGAGGAAGTTGAGTT+TGG - tig0032705:35639-35658 Msa1449800:intron 40.0%
! GAGTTTGGATCATTTGGTGA+TGG - tig0032705:35654-35673 Msa1449800:intron 40.0%
!! GGATCATTTGGTGATGGTTT+CGG - tig0032705:35660-35679 Msa1449800:intron 40.0%
!! GATCATTTGGTGATGGTTTC+GGG - tig0032705:35661-35680 Msa1449800:intron 40.0%
TCCATGAAATCCATAGATGG+AGG + tig0032705:35702-35721 None:intergenic 40.0%
CACTCCATGAAATCCATAGA+TGG + tig0032705:35705-35724 None:intergenic 40.0%
!! TGTAAATCAATGGGTTGAGG+GGG + tig0032705:35929-35948 None:intergenic 40.0%
!! GTGTAAATCAATGGGTTGAG+GGG + tig0032705:35930-35949 None:intergenic 40.0%
!! GGTGTAAATCAATGGGTTGA+GGG + tig0032705:35931-35950 None:intergenic 40.0%
!! AGGTGTAAATCAATGGGTTG+AGG + tig0032705:35932-35951 None:intergenic 40.0%
TCTCTCGCTTCTCTTTCGTT+GGG + tig0032705:29175-29194 None:intergenic 45.0%
TTCTCTCGCTTCTCTTTCGT+TGG + tig0032705:29176-29195 None:intergenic 45.0%
GCTTCGTCAAGTACATGTCT+CGG + tig0032705:29218-29237 None:intergenic 45.0%
GAAACGTGTGTAAGTTGCAG+AGG - tig0032705:29769-29788 Msa1449800:CDS 45.0%
TTTAGAGGGCGAACTGAAGT+GGG - tig0032705:29867-29886 Msa1449800:CDS 45.0%
CCCATCGAAGGAGACTTATA+AGG + tig0032705:29978-29997 None:intergenic 45.0%
TAGTAGTCATGCTCGTTTCC+AGG + tig0032705:30110-30129 None:intergenic 45.0%
AAGTCTGACCTGATTAGGTC+AGG + tig0032705:30348-30367 None:intergenic 45.0%
! TTAAGTGAGTTGAGCTTCGG+GGG - tig0032705:30398-30417 Msa1449800:intron 45.0%
GGTATGCGATAATCAAGCGT+AGG + tig0032705:30980-30999 Msa1449810:CDS 45.0%
TGGAAATCCCGCTTTCATTG+CGG - tig0032705:31075-31094 Msa1449800:intron 45.0%
GGCAACCAAATGTCGCAATT+AGG + tig0032705:31105-31124 Msa1449810:CDS 45.0%
!! AAGTGTTGGAGGTTGCAAGA+AGG + tig0032705:31126-31145 Msa1449810:CDS 45.0%
TCCCACATTGCTTAGAGGTA+TGG - tig0032705:31178-31197 Msa1449800:intron 45.0%
GCCATACCTCTAAGCAATGT+GGG + tig0032705:31182-31201 None:intergenic 45.0%
TGCCATACCTCTAAGCAATG+TGG + tig0032705:31183-31202 None:intergenic 45.0%
AAAAATTAACGGGGGGGCTT+TGG - tig0032705:31396-31415 Msa1449800:intron 45.0%
AAAATTAACGGGGGGGCTTT+GGG - tig0032705:31397-31416 Msa1449800:intron 45.0%
CGATAAAGCCCGAATCGATT+AGG + tig0032705:31683-31702 None:intergenic 45.0%
ACAAAATACCCCGAGAGAAG+AGG - tig0032705:31846-31865 Msa1449800:intron 45.0%
TTAAACCCTCCTCTTCTCTC+GGG + tig0032705:31858-31877 None:intergenic 45.0%
GTCACAAGTTCATGGCAAAC+GGG - tig0032705:32401-32420 Msa1449800:five_prime_UTR 45.0%
AAATGGCGATTGTCTTGTCG+AGG - tig0032705:32471-32490 Msa1449800:five_prime_UTR 45.0%
TGAGGATCAGCACTATCAAC+AGG + tig0032705:32499-32518 None:intergenic 45.0%
CTCCTTGTGAAGGAAAAAGG+AGG - tig0032705:32640-32659 Msa1449800:five_prime_UTR 45.0%
! ACCCTCCTTTTTCCTTCACA+AGG + tig0032705:32645-32664 None:intergenic 45.0%
! GCAGTATCGAGAAAAGGTTG+TGG - tig0032705:32670-32689 Msa1449800:five_prime_UTR 45.0%
GGACTCTGTGATAGTTGATC+TGG - tig0032705:32692-32711 Msa1449800:five_prime_UTR 45.0%
!! AAAATTCGGCACTGGTGTCA+AGG - tig0032705:33063-33082 Msa1449800:five_prime_UTR 45.0%
! GATCCTGAGGAGTATAAAGG+AGG - tig0032705:33187-33206 Msa1449800:five_prime_UTR 45.0%
! TGAGGAGTATAAAGGAGGCT+GGG - tig0032705:33192-33211 Msa1449800:five_prime_UTR 45.0%
GAAGGCAAGAGATGTTCTGT+CGG - tig0032705:33234-33253 Msa1449800:intron 45.0%
!! CTCAGCTTGCTAACTGCTAT+AGG - tig0032705:33521-33540 Msa1449800:five_prime_UTR 45.0%
! GCACAACCTTGAAATGGACT+GGG - tig0032705:33810-33829 Msa1449800:intron 45.0%
CACAATTCACATTCTGCTGC+GGG - tig0032705:33849-33868 Msa1449800:intron 45.0%
GTGCAGCCTTAAAACGGATA+GGG - tig0032705:33871-33890 Msa1449800:intron 45.0%
GGAGATGAATCAAGAAGAGG+TGG - tig0032705:34279-34298 Msa1449800:intron 45.0%
GGTGGAAGATAAACGGAAGA+AGG - tig0032705:34297-34316 Msa1449800:intron 45.0%
! GAAGAAGGTGAAGTTGGTTC+TGG - tig0032705:34312-34331 Msa1449800:intron 45.0%
!! GGCTGAGTTTGAGGCTATTT+TGG - tig0032705:34359-34378 Msa1449800:intron 45.0%
!! CCTTTTGGCCAATTTTGACC+AGG + tig0032705:34607-34626 None:intergenic 45.0%
CCTGGTCAAAATTGGCCAAA+AGG - tig0032705:34604-34623 Msa1449800:intron 45.0%
GCAAAGGGGCTAAAACTTAG+GGG - tig0032705:34635-34654 Msa1449800:intron 45.0%
CAAAGGGGCTAAAACTTAGG+GGG - tig0032705:34636-34655 Msa1449800:intron 45.0%
GGATGCATCTTCACCTGTAA+AGG + tig0032705:35039-35058 None:intergenic 45.0%
CGAGAATCATCATCCCAAGA+TGG + tig0032705:35114-35133 None:intergenic 45.0%
AAACTACACCAGTCCATTGC+GGG + tig0032705:35179-35198 None:intergenic 45.0%
! GGACTGGTGTAGTTTATGAG+AGG - tig0032705:35184-35203 Msa1449800:five_prime_UTR 45.0%
GAAACAGATCTTGTTGGGAG+AGG - tig0032705:35267-35286 Msa1449800:intron 45.0%
GCGAAGAAGTTTCACTTCGA+TGG - tig0032705:35421-35440 Msa1449800:intron 45.0%
CTATCAGAATCGAGTGACTC+AGG - tig0032705:35602-35621 Msa1449800:intron 45.0%
AGCTATCAAGCCTCCATCTA+TGG - tig0032705:35689-35708 Msa1449800:intron 45.0%
GCCTCCATCTATGGATTTCA+TGG - tig0032705:35698-35717 Msa1449800:intron 45.0%
!! CAGTGTGGTAAGCCATTTTG+AGG - tig0032705:35764-35783 Msa1449800:five_prime_UTR 45.0%
TTTATTGCGTGCTCCTTCCT+TGG - tig0032705:35848-35867 Msa1449800:intron 45.0%
!! ATATATTTGATAAAAATTAA+CGG - tig0032705:31385-31404 Msa1449800:intron 5.0%
!!! TTATGTATATTAATTATTTT+AGG + tig0032705:33491-33510 None:intergenic 5.0%
!!! AAATTTTCATTTTTTTTATT+AGG - tig0032705:34661-34680 Msa1449800:intron 5.0%
!!! AATTTTCATTTTTTTTATTA+GGG - tig0032705:34662-34681 Msa1449800:intron 5.0%
GCACAGTAGATGTGAGCTAC+TGG + tig0032705:29126-29145 None:intergenic 50.0%
ACATGTCTCGGCGTTTGCTT+GGG + tig0032705:29206-29225 None:intergenic 50.0%
TACATGTCTCGGCGTTTGCT+TGG + tig0032705:29207-29226 None:intergenic 50.0%
! CTTTAGAGGGCGAACTGAAG+TGG - tig0032705:29866-29885 Msa1449800:CDS 50.0%
! GTCTCCTTCGATGGGTTTGT+TGG - tig0032705:29983-30002 Msa1449800:CDS 50.0%
CAAGTACCTTTCTTGGCGCT+CGG + tig0032705:30456-30475 None:intergenic 50.0%
TTGCAAATCACCCTCCGAAG+AGG - tig0032705:30473-30492 Msa1449800:intron 50.0%
AGTTGAACCCACGACATTGC+AGG - tig0032705:30515-30534 Msa1449800:intron 50.0%
TGACTCACCTGCAATGTCGT+GGG + tig0032705:30525-30544 None:intergenic 50.0%
TTGACTCACCTGCAATGTCG+TGG + tig0032705:30526-30545 None:intergenic 50.0%
GAAGTTCAGGGTTCAAACGC+TGG - tig0032705:30715-30734 Msa1449800:intron 50.0%
ATCGCATACCTGACCTAACC+AGG - tig0032705:30990-31009 Msa1449800:intron 50.0%
GGAAATCCCGCTTTCATTGC+GGG - tig0032705:31076-31095 Msa1449800:intron 50.0%
GAAGCTCTCACCTTACAACC+CGG - tig0032705:31225-31244 Msa1449800:intron 50.0%
AAATACCCCGAGAGAAGAGG+AGG - tig0032705:31849-31868 Msa1449800:intron 50.0%
AATACCCCGAGAGAAGAGGA+GGG - tig0032705:31850-31869 Msa1449800:intron 50.0%
TAAACCCTCCTCTTCTCTCG+GGG + tig0032705:31857-31876 None:intergenic 50.0%
TAGTTGCCAGCTAGAGGTCT+TGG - tig0032705:32135-32154 Msa1449800:five_prime_UTR 50.0%
GATTGACCAAGACCTCTAGC+TGG + tig0032705:32144-32163 None:intergenic 50.0%
CAGCCTCCTTTATACTCCTC+AGG + tig0032705:33193-33212 None:intergenic 50.0%
! CTGAGGAGTATAAAGGAGGC+TGG - tig0032705:33191-33210 Msa1449800:five_prime_UTR 50.0%
CTGTGGGCACAACCTTGAAA+TGG - tig0032705:33804-33823 Msa1449800:intron 50.0%
GGCACAACCTTGAAATGGAC+TGG - tig0032705:33809-33828 Msa1449800:intron 50.0%
GGTGCAGCCTTAAAACGGAT+AGG - tig0032705:33870-33889 Msa1449800:intron 50.0%
GAGACTCATGCTGTTGTTGC+TGG - tig0032705:34338-34357 Msa1449800:intron 50.0%
! GTTGTTGCTGGCTGAGTTTG+AGG - tig0032705:34350-34369 Msa1449800:intron 50.0%
ACCTCTTGTGATGGCTGTCA+CGG - tig0032705:34392-34411 Msa1449800:intron 50.0%
!! GGCGTTGACCTGGTCAAAAT+TGG - tig0032705:34596-34615 Msa1449800:intron 50.0%
TGTAGGTCGTCGTTTCCAAG+CGG - tig0032705:35149-35168 Msa1449800:intron 50.0%
GAGAGGGACTCCAAATGGTT+AGG - tig0032705:35201-35220 Msa1449800:five_prime_UTR 50.0%
GACTGTTGACAGCGACTATG+AGG - tig0032705:35626-35645 Msa1449800:intron 50.0%
!! CATTTGGTGATGGTTTCGGG+AGG - tig0032705:35664-35683 Msa1449800:intron 50.0%
GGTTACAGATGAGAGAGAGC+TGG + tig0032705:36005-36024 None:intergenic 50.0%
CATGTCTCGGCGTTTGCTTG+GGG + tig0032705:29205-29224 None:intergenic 55.0%
CAACAGCTGCTGCTGACCTA+TGG - tig0032705:29622-29641 Msa1449800:CDS 55.0%
AGCATGTGGACCTCTTCGGA+GGG + tig0032705:30486-30505 None:intergenic 55.0%
TGCCAGCATGTGGACCTCTT+CGG + tig0032705:30490-30509 None:intergenic 55.0%
AGAGGTCCACATGCTGGCAA+TGG - tig0032705:30491-30510 Msa1449800:intron 55.0%
GAGGTCCACATGCTGGCAAT+GGG - tig0032705:30492-30511 Msa1449800:intron 55.0%
CAACTCCCATTGCCAGCATG+TGG + tig0032705:30500-30519 None:intergenic 55.0%
GGCCGCCTAATTGCGACATT+TGG - tig0032705:31097-31116 Msa1449800:intron 55.0%
! CGATTCGGGCTTTATCGGAC+CGG - tig0032705:31686-31705 Msa1449800:intron 55.0%
! GGGTTGTTAATTGGTGGGCC+AGG + tig0032705:31723-31742 None:intergenic 55.0%
TGACTGACACCGAGCATCAC+CGG + tig0032705:32596-32615 None:intergenic 55.0%
CTGCGGGTGCAGCCTTAAAA+CGG - tig0032705:33865-33884 Msa1449800:intron 55.0%
! GCACGGCCCTATCCGTTTTA+AGG + tig0032705:33880-33899 None:intergenic 55.0%
CATTTGGCCGCCGTTGAATG+TGG - tig0032705:34236-34255 Msa1449800:intron 55.0%
GCTAGCACCGCCACATTCAA+CGG + tig0032705:34249-34268 None:intergenic 55.0%
! GTTGAATGTGGCGGTGCTAG+CGG - tig0032705:34248-34267 Msa1449800:intron 55.0%
ACCGTGACAGCCATCACAAG+AGG + tig0032705:34396-34415 None:intergenic 55.0%
TCTTGTGATGGCTGTCACGG+TGG - tig0032705:34395-34414 Msa1449800:intron 55.0%
! ACAGACGTGGCATGCCACTT+AGG - tig0032705:34575-34594 Msa1449800:five_prime_UTR 55.0%
!! ATGCCACTTAGGCGTTGACC+TGG - tig0032705:34586-34605 Msa1449800:intron 55.0%
TGACCAGGTCAACGCCTAAG+TGG + tig0032705:34592-34611 None:intergenic 55.0%
TCTGCAGAAACGACGGCATC+TGG + tig0032705:35081-35100 None:intergenic 55.0%
CTTGTTGGGAGAGGAAGACG+AGG - tig0032705:35276-35295 Msa1449800:intron 55.0%
ATTGCGTGCTCCTTCCTTGG+AGG - tig0032705:35851-35870 Msa1449800:intron 55.0%
TGCATCCCCTGGATACAAGC+TGG + tig0032705:35900-35919 None:intergenic 55.0%
CAGCATGTGGACCTCTTCGG+AGG + tig0032705:30487-30506 None:intergenic 60.0%
CTCCGAAGAGGTCCACATGC+TGG - tig0032705:30485-30504 Msa1449800:intron 60.0%
TAGGCGGCCCGCAATGAAAG+CGG + tig0032705:31086-31105 Msa1449810:CDS 60.0%
GGACCGGACTAAAATGGGCC+TGG - tig0032705:31702-31721 Msa1449800:intron 60.0%
!! GGGCCAGGCCCATTTTAGTC+CGG + tig0032705:31708-31727 None:intergenic 60.0%
AGGCAATGTGAGGCCTGAGC+CGG - tig0032705:32574-32593 Msa1449800:five_prime_UTR 60.0%
GGGCGACCCAGTCCATTTCA+AGG + tig0032705:33819-33838 None:intergenic 60.0%
ACGGATAGGGCCGTGCATAC+TGG - tig0032705:33884-33903 Msa1449800:intron 60.0%
TTGGCCGCCGTTGAATGTGG+CGG - tig0032705:34239-34258 Msa1449800:intron 60.0%
AGCACCGCCACATTCAACGG+CGG + tig0032705:34246-34265 None:intergenic 60.0%
TCCAAGCGGAAGTCCCGCAA+TGG - tig0032705:35163-35182 Msa1449800:intron 60.0%
TCCATTGCGGGACTTCCGCT+TGG + tig0032705:35167-35186 None:intergenic 60.0%
GCGGAGCCAGCTTGTATCCA+GGG - tig0032705:35891-35910 Msa1449800:intron 60.0%
CGGAGCCAGCTTGTATCCAG+GGG - tig0032705:35892-35911 Msa1449800:intron 60.0%
TTGAGCTTCGGGGGCTCACC+AGG - tig0032705:30407-30426 Msa1449800:intron 65.0%
TGAGCTTCGGGGGCTCACCA+GGG - tig0032705:30408-30427 Msa1449800:intron 65.0%
AGGCGGCCCGCAATGAAAGC+GGG + tig0032705:31085-31104 Msa1449810:CDS 65.0%
AGGCCTGAGCCGGTGATGCT+CGG - tig0032705:32584-32603 Msa1449800:five_prime_UTR 65.0%
!! ACACCGAGCATCACCGGCTC+AGG + tig0032705:32590-32609 None:intergenic 65.0%
! GAATGTGGCGGTGCTAGCGG+CGG - tig0032705:34251-34270 Msa1449800:intron 65.0%
GCGGAAGTCCCGCAATGGAC+TGG - tig0032705:35168-35187 Msa1449800:intron 65.0%
GTTGGCAGCGCCTCCAAGGA+AGG + tig0032705:35864-35883 None:intergenic 65.0%
! TACAAGCTGGCTCCGCCCCT+GGG + tig0032705:35887-35906 None:intergenic 65.0%
! ATACAAGCTGGCTCCGCCCC+TGG + tig0032705:35888-35907 None:intergenic 65.0%
GGCGGAGCCAGCTTGTATCC+AGG - tig0032705:35890-35909 Msa1449800:intron 65.0%
TTCGGGGGCTCACCAGGGTC+AGG - tig0032705:30413-30432 Msa1449800:intron 70.0%
TCGGGGGCTCACCAGGGTCA+GGG - tig0032705:30414-30433 Msa1449800:intron 70.0%
CTTGAGGCCTGCCCTGACCC+TGG + tig0032705:30428-30447 None:intergenic 70.0%
CAGGGTCAGGGCAGGCCTCA+AGG - tig0032705:30426-30445 Msa1449800:intron 70.0%
TTGGCGCTCGGCGAGCCTTG+AGG + tig0032705:30444-30463 None:intergenic 70.0%
GGCTCGCCGAGCGCCAAGAA+AGG - tig0032705:30447-30466 Msa1449800:intron 70.0%
! GCGGTGCTAGCGGCGGTGTA+AGG - tig0032705:34258-34277 Msa1449800:intron 70.0%
! TGGGGTTGGCAGCGCCTCCA+AGG + tig0032705:35868-35887 None:intergenic 70.0%
!! TTGGAGGCGCTGCCAACCCC+AGG - tig0032705:35867-35886 Msa1449800:intron 70.0%
!! TGGAGGCGCTGCCAACCCCA+GGG - tig0032705:35868-35887 Msa1449800:intron 70.0%
! ACAAGCTGGCTCCGCCCCTG+GGG + tig0032705:35886-35905 None:intergenic 70.0%
GGGGGTTCAGCTGCATCCCC+TGG + tig0032705:35911-35930 None:intergenic 70.0%
GGGCTCACCAGGGTCAGGGC+AGG - tig0032705:30418-30437 Msa1449800:intron 75.0%
!! GGAGGCGCTGCCAACCCCAG+GGG - tig0032705:35869-35888 Msa1449800:intron 75.0%
! GGCGCTGCCAACCCCAGGGG+CGG - tig0032705:35872-35891 Msa1449800:intron 80.0%
!! GCTGGCTCCGCCCCTGGGGT+TGG + tig0032705:35882-35901 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0032705 gene 29108 36111 29108 ID=Msa1449800;Name=Msa1449800
tig0032705 mRNA 29108 36111 29108 ID=Msa1449800-mRNA-1;Parent=Msa1449800;Name=Msa1449800-mRNA-1;_AED=0.25;_eAED=0.25;_QI=1922|1|0.87|1|0.28|0.62|8|272|314
tig0032705 exon 29108 30174 29108 ID=Msa1449800-mRNA-1:exon:17139;Parent=Msa1449800-mRNA-1
tig0032705 exon 31922 33242 31922 ID=Msa1449800-mRNA-1:exon:17138;Parent=Msa1449800-mRNA-1
tig0032705 exon 33377 33550 33377 ID=Msa1449800-mRNA-1:exon:17137;Parent=Msa1449800-mRNA-1
tig0032705 exon 34459 34602 34459 ID=Msa1449800-mRNA-1:exon:17136;Parent=Msa1449800-mRNA-1
tig0032705 exon 34683 34790 34683 ID=Msa1449800-mRNA-1:exon:17135;Parent=Msa1449800-mRNA-1
tig0032705 exon 35175 35282 35175 ID=Msa1449800-mRNA-1:exon:17134;Parent=Msa1449800-mRNA-1
tig0032705 exon 35758 35837 35758 ID=Msa1449800-mRNA-1:exon:17133;Parent=Msa1449800-mRNA-1
tig0032705 exon 35975 36111 35975 ID=Msa1449800-mRNA-1:exon:17132;Parent=Msa1449800-mRNA-1
tig0032705 five_prime_UTR 35975 36111 35975 ID=Msa1449800-mRNA-1:five_prime_utr;Parent=Msa1449800-mRNA-1
tig0032705 five_prime_UTR 35758 35837 35758 ID=Msa1449800-mRNA-1:five_prime_utr;Parent=Msa1449800-mRNA-1
tig0032705 five_prime_UTR 35175 35282 35175 ID=Msa1449800-mRNA-1:five_prime_utr;Parent=Msa1449800-mRNA-1
tig0032705 five_prime_UTR 34683 34790 34683 ID=Msa1449800-mRNA-1:five_prime_utr;Parent=Msa1449800-mRNA-1
tig0032705 five_prime_UTR 34459 34602 34459 ID=Msa1449800-mRNA-1:five_prime_utr;Parent=Msa1449800-mRNA-1
tig0032705 five_prime_UTR 33377 33550 33377 ID=Msa1449800-mRNA-1:five_prime_utr;Parent=Msa1449800-mRNA-1
tig0032705 five_prime_UTR 32072 33242 32072 ID=Msa1449800-mRNA-1:five_prime_utr;Parent=Msa1449800-mRNA-1
tig0032705 CDS 31922 32071 31922 ID=Msa1449800-mRNA-1:cds;Parent=Msa1449800-mRNA-1
tig0032705 CDS 29380 30174 29380 ID=Msa1449800-mRNA-1:cds;Parent=Msa1449800-mRNA-1
tig0032705 three_prime_UTR 29108 29379 29108 ID=Msa1449800-mRNA-1:three_prime_utr;Parent=Msa1449800-mRNA-1
Gene Sequence

>Msa1449800

ATGATAAACTGGATGAAGAATATCGCAATACACCCATTTGATCCTGAGGAGTATAAAGGAGGCTGGGACTTTTTTGTTCAGATGCTGAAGGCAAGAGATGTTCTGTCGGTCAGAAAGCATGCAGAACCAAACAATGGGTCATCATCAAAGGTGAAGATGCATCCTTTGCATGATTCTGTCAAACCAGATGCCGTCGTTTCTGCAGATTTGATTAAGCCATCTTGGGATGATGATTCTCGTGAAAAGCTTGTTTCTGTAGGTCGTCGTTTCCAAGCGGAAGTCCCGCAATGGACTGGTGTAGTTTATGAGAGGGACTCCAAATGGTTAGGCACACAAGTATGGCCTGTTAAAAATCATTCAAAACCTACAACTGAAACAGATCTTGTTGGGAGAGGAAGACGAGGAAAGTGTAGCTGCAATGTTCAAGGTTCTGTTGACTGTGTCAGACTTCATATTGCTGCAAACAGGACCAAACTGAAGTTTGAATTGGGTTCTGCATTTTACCATTGGGGATTTGATAAAATGGGCGAAGAAGTTTCACTTCGATGGACAGCTGATGAAGAAAAGAGATTTAAGGATGCGATGGGGTTAAAAATCCCTTCCCAAAACAAGTCTTTTTGGAACAACCCATCCATATACTTTCAAAGGAAGACAAGAAAAGACATGGTGAGCTATTGCTTCAATGTATATCTTATTCAACTAAGAAGCTATCAGAATCGAGTGACTCAGGAGACTGTTGACAGCGACTATGAGGAAGTTGAGTTTGGATCATTTGGTGATGGTTTCGGGAGGAAAGCTATCAAGCCTCCATCTATGGATTTCATGGAGTGTTCAGAGAACACACATGCTTTGATTTTGAGTAGACAAAACAGTGTGGTAAGCCATTTTGAGGAAGAACATGTAGAAGCTGCTATTTTTTTTTGTTTGACATATATCTGTTGTTAA
Protein sequence

>Msa1449800

MINWMKNIAIHPFDPEEYKGGWDFFVQMLKARDVLSVRKHAEPNNGSSSKVKMHPLHDSVKPDAVVSADLIKPSWDDDSREKLVSVGRRFQAEVPQWTGVVYERDSKWLGTQVWPVKNHSKPTTETDLVGRGRRGKCSCNVQGSVDCVRLHIAANRTKLKFELGSAFYHWGFDKMGEEVSLRWTADEEKRFKDAMGLKIPSQNKSFWNNPSIYFQRKTRKDMVSYCFNVYLIQLRSYQNRVTQETVDSDYEEVEFGSFGDGFGRKAIKPPSMDFMECSENTHALILSRQNSVVSHFEEEHVEAAIFFCLTYICC*