AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1171880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1171880 MtrunA17_Chr8g0387141 67.504 597 129 7 1 533 1 596 0.0 757
Msa1171880 MtrunA17_Chr1g0186281 67.462 587 121 8 1 526 1 578 0.0 739
Msa1171880 MtrunA17_Chr1g0186261 66.214 589 128 8 1 526 1 581 0.0 730
Msa1171880 MtrunA17_Chr1g0186191 62.633 562 113 9 32 526 57 588 0.0 646
Msa1171880 MtrunA17_Chr8g0387161 74.667 300 60 4 247 533 1 297 4.18e-152 437
Msa1171880 MtrunA17_Chr8g0387181 67.812 320 79 6 1 301 1 315 9.21e-128 386
Msa1171880 MtrunA17_Chr8g0387181 73.725 255 61 2 279 533 380 628 2.68e-125 380
Msa1171880 MtrunA17_Chr6g0479271 64.236 288 63 6 178 425 7 294 1.90e-110 332
Msa1171880 MtrunA17_Chr6g0479271 91.892 37 3 0 497 533 292 328 6.66e-15 75.9
Msa1171880 MtrunA17_Chr7g0248041 35.825 388 200 9 183 521 191 578 2.09e-60 209
Msa1171880 MtrunA17_Chr7g0248041 57.377 61 26 0 63 123 1 61 5.53e-12 68.6
Msa1171880 MtrunA17_Chr6g0453251 67.460 126 37 1 1 122 1 126 1.13e-48 164
Msa1171880 MtrunA17_Chr8g0348691 46.524 187 95 4 330 512 76 261 3.65e-48 167
Msa1171880 MtrunA17_Chr5g0420461 61.053 95 18 1 333 427 90 165 9.15e-30 115
Msa1171880 MtrunA17_Chr5g0420461 94.595 37 2 0 497 533 161 197 1.30e-16 78.6
Msa1171880 MtrunA17_Chr7g0241681 38.012 171 98 2 329 493 193 361 1.24e-28 117
Msa1171880 MtrunA17_Chr3g0086341 38.378 185 101 5 325 498 144 326 6.64e-25 108
Msa1171880 MtrunA17_Chr7g0241661 30.601 183 119 3 319 495 175 355 2.34e-19 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1171880 AT4G11400.2 31.699 571 291 17 37 532 27 573 1.25e-74 247
Msa1171880 AT4G11400.1 31.699 571 291 17 37 532 27 573 1.25e-74 247
Msa1171880 AT2G46040.3 35.959 292 153 9 238 499 244 531 1.14e-41 157
Msa1171880 AT2G46040.3 39.130 92 56 0 38 129 47 138 3.00e-11 66.2
Msa1171880 AT2G46040.1 35.959 292 153 9 238 499 244 531 1.14e-41 157
Msa1171880 AT2G46040.1 39.130 92 56 0 38 129 47 138 3.00e-11 66.2
Msa1171880 AT2G46040.2 35.959 292 153 9 238 499 258 545 1.20e-41 158
Msa1171880 AT2G46040.2 39.130 92 56 0 38 129 61 152 3.68e-11 66.2
Msa1171880 AT5G04110.1 38.509 161 87 4 330 479 361 520 4.72e-26 112
Msa1171880 AT5G04110.3 38.509 161 87 4 330 479 361 520 4.72e-26 112
Msa1171880 AT5G04110.2 38.509 161 87 4 330 479 362 521 4.74e-26 112
Msa1171880 AT1G13880.2 34.031 191 106 6 321 498 129 312 4.46e-20 93.2
Msa1171880 AT1G13880.1 34.031 191 106 6 321 498 119 302 4.70e-20 93.2
Msa1171880 AT1G13880.3 34.031 191 106 6 321 498 120 303 4.78e-20 93.2
Msa1171880 AT5G04110.4 37.241 145 79 4 330 463 361 504 2.37e-19 91.7
Msa1171880 AT2G03470.1 34.783 184 113 4 328 504 121 304 2.55e-19 91.3
Msa1171880 AT2G03470.2 34.783 184 113 4 328 504 120 303 2.66e-19 90.9
Msa1171880 AT1G26580.3 28.571 210 130 4 323 514 62 269 1.80e-18 88.2
Msa1171880 AT1G26580.2 28.571 210 130 4 323 514 128 335 2.60e-18 88.2
Msa1171880 AT1G26580.1 28.571 210 130 4 323 514 128 335 2.60e-18 88.2

Find 176 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACCATCACCGTTAAAATTT+TGG 0.110531 8_1:-1798313 None:intergenic
TGAAAATTATTGAGAATTTA+TGG 0.124128 8_1:-1797297 None:intergenic
CACCCTCACATTTGTTGTTT+TGG 0.143855 8_1:-1798289 None:intergenic
TTCATTCTCGCAAACGTAAA+AGG 0.167837 8_1:+1798399 Msa1171880:CDS
CCATTGGGGATTTGATAAAA+TGG 0.180493 8_1:+1800687 Msa1171880:CDS
GATCATTTGGTGATGGTTTC+GGG 0.181909 8_1:+1800950 Msa1171880:CDS
TGTCTTCCTTTGAAAGTATA+TGG 0.190078 8_1:-1800815 None:intergenic
TTCTCCCTTGTGAAGGAAAA+AGG 0.214256 8_1:+1797924 Msa1171880:CDS
ACATATATCTGTTGTTAAAA+TGG 0.222083 8_1:+1801111 Msa1171880:three_prime_UTR
CTTCCTTCTTAAAACTCTTT+AGG 0.222790 8_1:-1795979 None:intergenic
AACGAACATGACTACTAATT+TGG 0.224028 8_1:+1796022 Msa1171880:five_prime_UTR
TTTATCGGACCGGACTAAAA+TGG 0.225462 8_1:+1796980 Msa1171880:five_prime_UTR
CAAGAGTGATGGTAATTTAT+TGG 0.225995 8_1:+1798256 Msa1171880:CDS
CCTTTATAATGCTAAATACT+AGG 0.237593 8_1:-1797025 None:intergenic
GGATCATTTGGTGATGGTTT+CGG 0.238389 8_1:+1800949 Msa1171880:CDS
TAAATTTCTTAAAACTCTTT+AGG 0.244804 8_1:-1795905 None:intergenic
CTACAAGTTCTTCCTCAAAA+TGG 0.250983 8_1:-1801066 None:intergenic
TGATGAAGAAAAGAGATTTA+AGG 0.278264 8_1:+1800738 Msa1171880:CDS
ACAAGATCTGTTTCAGTTGT+AGG 0.281094 8_1:-1800547 None:intergenic
CTAATCGATTCGGGCTTTAT+CGG 0.283608 8_1:+1796965 Msa1171880:five_prime_UTR
GGGTTTGGACCTTAATGTTT+TGG 0.293428 8_1:+1798001 Msa1171880:CDS
CATAATTAAGCACATTGATT+TGG 0.300440 8_1:+1798226 Msa1171880:CDS
GACCAAACTGAAGTTTGAAT+TGG 0.302122 8_1:+1800651 Msa1171880:CDS
GGACTCTGTGATAGTTGATC+TGG 0.306502 8_1:+1797980 Msa1171880:CDS
TAAATACTAGGGTTGTTAAT+TGG 0.318097 8_1:-1797013 None:intergenic
GAATTTATGGTGGTACTAAC+TGG 0.324037 8_1:-1797284 None:intergenic
TGATTTGCAAGTACCTTTCT+TGG 0.329744 8_1:-1795745 None:intergenic
CCTAGTATTTAGCATTATAA+AGG 0.331565 8_1:+1797025 Msa1171880:five_prime_UTR
GCCTCCATCTATGGATTTCA+TGG 0.339718 8_1:+1800987 Msa1171880:CDS
AGCTATCAAGCCTCCATCTA+TGG 0.341794 8_1:+1800978 Msa1171880:CDS
GATTTGAGAATGAGAGGCTT+TGG 0.343884 8_1:-1798160 None:intergenic
CAGATTTGATTAAGCCATCT+TGG 0.345613 8_1:+1800386 Msa1171880:CDS
TCACTGAAGCCAAAACATTA+AGG 0.361658 8_1:-1798010 None:intergenic
CATTATCGGAAATGATAAAC+TGG 0.368928 8_1:+1798426 Msa1171880:CDS
CAAGAGGAGAATTGTATTAG+AGG 0.371040 8_1:+1797840 Msa1171880:CDS
GACTATGAGGAAGTTGAGTT+TGG 0.371247 8_1:+1800928 Msa1171880:CDS
ACTCACATTTCATCAACATT+AGG 0.371368 8_1:-1795312 None:intergenic
AATGGTTAGGCACACAAGTA+TGG 0.372435 8_1:+1800503 Msa1171880:CDS
TGACTTGACCTAATCGATTC+GGG 0.372470 8_1:+1796956 Msa1171880:five_prime_UTR
TTTATTGCGTGCTCCTTCCT+TGG 0.375724 8_1:+1801137 Msa1171880:three_prime_UTR
GACATAACATTAACATATAC+TGG 0.379795 8_1:-1797528 None:intergenic
TACTTGTGTGCCTAACCATT+TGG 0.380699 8_1:-1800500 None:intergenic
CTCTAATACAATTCTCCTCT+TGG 0.380788 8_1:-1797839 None:intergenic
TTTACTAAATTTCATGCAAA+TGG 0.388491 8_1:+1797741 Msa1171880:CDS
CGATAAAGCCCGAATCGATT+AGG 0.389195 8_1:-1796964 None:intergenic
GAAGTTGAGTTTGGATCATT+TGG 0.390652 8_1:+1800937 Msa1171880:CDS
TTTGATGATGACCCATTGTT+TGG 0.394625 8_1:-1798563 None:intergenic
TTGACTTGACCTAATCGATT+CGG 0.400483 8_1:+1796955 Msa1171880:five_prime_UTR
TCTGCAGAAACGACGGCATC+TGG 0.402636 8_1:-1800367 None:intergenic
ACCCAATTCAAACTTCAGTT+TGG 0.406126 8_1:-1800653 None:intergenic
TGTGATAGTTGATCTGGGTT+TGG 0.407331 8_1:+1797986 Msa1171880:CDS
TTATACTCCTCAGGATCAAA+TGG 0.411508 8_1:-1798470 None:intergenic
CATTGGGGATTTGATAAAAT+GGG 0.415280 8_1:+1800688 Msa1171880:CDS
CCTTCACAAGGGAGAAAAGT+TGG 0.420577 8_1:-1797917 None:intergenic
AAAGAAGGGGAATGAAATAA+AGG 0.421487 8_1:+1797107 Msa1171880:five_prime_UTR
AAACTACACCAGTCCATTGC+GGG 0.425596 8_1:-1800465 None:intergenic
ACGTAAAAGGGAATCATTAT+CGG 0.428409 8_1:+1798412 Msa1171880:CDS
TGAGGATCAGCACTATCAAC+AGG 0.430312 8_1:-1797783 None:intergenic
AACTCACATTGCATAACATT+AGG 0.432591 8_1:-1795932 None:intergenic
TCATTGCAGTGTGAAGAGAT+AGG 0.436154 8_1:-1797352 None:intergenic
TTCCTTTGAAAGTATATGGA+TGG 0.441539 8_1:-1800811 None:intergenic
CACTCCATGAAATCCATAGA+TGG 0.442549 8_1:-1800991 None:intergenic
TTTGATCCTGAGGAGTATAA+AGG 0.444102 8_1:+1798473 Msa1171880:CDS
ACCAAACTGAAGTTTGAATT+GGG 0.446444 8_1:+1800652 Msa1171880:CDS
AGATTTGATTAAGCCATCTT+GGG 0.447011 8_1:+1800387 Msa1171880:CDS
AGTTGAACCCACGACATTGC+AGG 0.450458 8_1:+1795800 Msa1171880:five_prime_UTR
GACTTCATATTGCTGCAAAC+AGG 0.450773 8_1:+1800629 Msa1171880:CDS
AAAACTCTTTAGGTGTCCCT+TGG 0.452945 8_1:-1795969 None:intergenic
ACACCGAGCATCACCGGCTC+AGG 0.456593 8_1:-1797873 None:intergenic
CAGCCTCCTTTATACTCCTC+AGG 0.457410 8_1:-1798479 None:intergenic
TTATCGGACCGGACTAAAAT+GGG 0.458596 8_1:+1796981 Msa1171880:five_prime_UTR
CAACTGAAACAGATCTTGTT+GGG 0.465328 8_1:+1800551 Msa1171880:CDS
AGTCACTAGTTCATGGCAAA+CGG 0.465489 8_1:+1797687 Msa1171880:exon
CCTCTCATTCTCAAATCTAA+AGG 0.469105 8_1:+1798166 Msa1171880:CDS
CTTTATAATGCTAAATACTA+GGG 0.469959 8_1:-1797024 None:intergenic
GGGTTGTTAATTGGTGGGCC+AGG 0.470782 8_1:-1797004 None:intergenic
ACAACTGAAACAGATCTTGT+TGG 0.471432 8_1:+1800550 Msa1171880:CDS
ATTGCGTGCTCCTTCCTTGG+AGG 0.472945 8_1:+1801140 Msa1171880:three_prime_UTR
GGGCTCACCAGGGTCAGGGC+AGG 0.474351 8_1:+1795703 Msa1171880:intron
TCATTCTCGCAAACGTAAAA+GGG 0.477895 8_1:+1798400 Msa1171880:CDS
CTGAGGAGTATAAAGGAGGC+TGG 0.479138 8_1:+1798480 Msa1171880:CDS
TGCCAGCATGTGGACCTCTT+CGG 0.479346 8_1:-1795772 None:intergenic
CGTGAAAAGCTTGTTTCTGT+AGG 0.481232 8_1:+1800421 Msa1171880:CDS
GCGGAAGTCCCGCAATGGAC+TGG 0.484951 8_1:+1800457 Msa1171880:CDS
CAGTATCGAGAAAAGGGTTG+TGG 0.485102 8_1:+1797958 Msa1171880:CDS
TCCATTGCGGGACTTCCGCT+TGG 0.488954 8_1:-1800453 None:intergenic
AGTAGTGAGTCACTAGTTCA+TGG 0.490852 8_1:+1797680 Msa1171880:exon
TAGTTGCCAGCTAGAGGTCT+TGG 0.491651 8_1:+1797421 Msa1171880:five_prime_UTR
GACTCTGTGATAGTTGATCT+GGG 0.491869 8_1:+1797981 Msa1171880:CDS
GTCACTAGTTCATGGCAAAC+GGG 0.491931 8_1:+1797688 Msa1171880:exon
AGGCCTGAGCCGGTGATGCT+CGG 0.501839 8_1:+1797870 Msa1171880:CDS
TATGCTGCAGTATCGAGAAA+AGG 0.502280 8_1:+1797951 Msa1171880:CDS
ATGTGCTTAATTATGTTACA+TGG 0.503262 8_1:-1798218 None:intergenic
GTTGGCAGCGCCTCCAAGGA+AGG 0.505786 8_1:-1801150 None:intergenic
CAGGGTCAGGGCAGGCCTCA+AGG 0.505904 8_1:+1795711 Msa1171880:intron
TTTATGAGAGGGACTCCAAA+TGG 0.506102 8_1:+1800485 Msa1171880:CDS
GAAGTTCAGGGTTCAAACGC+TGG 0.506244 8_1:+1795998 Msa1171880:five_prime_UTR
GAGAGGGACTCCAAATGGTT+AGG 0.506452 8_1:+1800490 Msa1171880:CDS
TCCTTTGAAAGTATATGGAT+GGG 0.510514 8_1:-1800810 None:intergenic
AGAGGTCCACATGCTGGCAA+TGG 0.510760 8_1:+1795776 Msa1171880:five_prime_UTR
AAGAGATTTAAGGATGCGAT+GGG 0.512153 8_1:+1800748 Msa1171880:CDS
GACTGTTGACAGCGACTATG+AGG 0.512319 8_1:+1800915 Msa1171880:CDS
CTCCGAAGAGGTCCACATGC+TGG 0.515248 8_1:+1795770 Msa1171880:five_prime_UTR
GAGGTCCACATGCTGGCAAT+GGG 0.516119 8_1:+1795777 Msa1171880:five_prime_UTR
GCGAAGAAGTTTCACTTCGA+TGG 0.516591 8_1:+1800710 Msa1171880:CDS
AAGTGTAGCTGCAATGTTCA+AGG 0.516681 8_1:+1800589 Msa1171880:CDS
GAGTTTGGATCATTTGGTGA+TGG 0.518699 8_1:+1800943 Msa1171880:CDS
TGACTGACACCGAGCATCAC+CGG 0.520466 8_1:-1797879 None:intergenic
ATCTGAGTGATTTCGAAGGT+TGG 0.523296 8_1:+1798051 Msa1171880:CDS
TACTAGGGTTGTTAATTGGT+GGG 0.524405 8_1:-1797009 None:intergenic
CAAGTACCTTTCTTGGCGCT+CGG 0.524541 8_1:-1795738 None:intergenic
ATACTAGGGTTGTTAATTGG+TGG 0.527020 8_1:-1797010 None:intergenic
CTATCAGAATCGAGTGACTC+AGG 0.527715 8_1:+1800891 Msa1171880:CDS
ATAAATTACCATCACTCTTG+TGG 0.532243 8_1:-1798253 None:intergenic
TTGGCGCTCGGCGAGCCTTG+AGG 0.534027 8_1:-1795726 None:intergenic
TTGACTCACCTGCAATGTCG+TGG 0.537718 8_1:-1795808 None:intergenic
GGCTCGCCGAGCGCCAAGAA+AGG 0.538459 8_1:+1795732 Msa1171880:five_prime_UTR
AGCATGCAGAACCAAACAAT+GGG 0.540970 8_1:+1798552 Msa1171880:CDS
AAAGAGATTTAAGGATGCGA+TGG 0.541017 8_1:+1800747 Msa1171880:CDS
CCTTTAGATTTGAGAATGAG+AGG 0.541549 8_1:-1798166 None:intergenic
AGTATCGAGAAAAGGGTTGT+GGG 0.542959 8_1:+1797959 Msa1171880:CDS
ACCCATCCATATACTTTCAA+AGG 0.543482 8_1:+1800809 Msa1171880:CDS
GGACCGGACTAAAATGGGCC+TGG 0.545467 8_1:+1796986 Msa1171880:five_prime_UTR
ATGCTGCAGTATCGAGAAAA+GGG 0.546828 8_1:+1797952 Msa1171880:CDS
TATACTCCTCAGGATCAAAT+GGG 0.549641 8_1:-1798469 None:intergenic
ATGTATTAGTTGCCAGCTAG+AGG 0.550525 8_1:+1797415 Msa1171880:five_prime_UTR
AAACAATGGGTCATCATCAA+AGG 0.556398 8_1:+1798565 Msa1171880:CDS
CATATACAAAAGTACAAGCT+AGG 0.558557 8_1:+1797598 Msa1171880:five_prime_UTR
CGATTCGGGCTTTATCGGAC+CGG 0.560470 8_1:+1796970 Msa1171880:five_prime_UTR
AGGCAATGTGAGGCCTGAGC+CGG 0.560985 8_1:+1797860 Msa1171880:CDS
AATTGATAAAAGAGTATGAA+GGG 0.568202 8_1:-1797478 None:intergenic
AAAATTCGGCACTGGTGTCA+AGG 0.572645 8_1:+1798352 Msa1171880:CDS
CAGCATGTGGACCTCTTCGG+AGG 0.573637 8_1:-1795769 None:intergenic
TGAGGAGTATAAAGGAGGCT+GGG 0.575783 8_1:+1798481 Msa1171880:CDS
CAACTCCCATTGCCAGCATG+TGG 0.576751 8_1:-1795782 None:intergenic
TGACTCACCTGCAATGTCGT+GGG 0.581096 8_1:-1795807 None:intergenic
AGCATGTGGACCTCTTCGGA+GGG 0.581761 8_1:-1795768 None:intergenic
TTTAGTTTCAAGGCGATCAA+GGG 0.581796 8_1:-1797715 None:intergenic
TTGGTTAACCACAAGAGTGA+TGG 0.581825 8_1:+1798245 Msa1171880:CDS
AGAATGAAATTCAAAAGAAG+CGG 0.584345 8_1:-1798384 None:intergenic
CGAGAATCATCATCCCAAGA+TGG 0.586176 8_1:-1800400 None:intergenic
GATTGACCAAGACCTCTAGC+TGG 0.588589 8_1:-1797427 None:intergenic
AACCAAAACAACAAATGTGA+GGG 0.590681 8_1:+1798287 Msa1171880:CDS
ACATTTCATCAACATTAGGA+TGG 0.594673 8_1:-1795308 None:intergenic
AAATTGATAAAAGAGTATGA+AGG 0.596513 8_1:-1797479 None:intergenic
TTTGCAGCATTGAAATTCAA+CGG 0.596905 8_1:+1797256 Msa1171880:intron
TCCAAGCGGAAGTCCCGCAA+TGG 0.597080 8_1:+1800452 Msa1171880:CDS
TTTGTTGGGAGTTCAAAGAA+GGG 0.597963 8_1:+1797093 Msa1171880:five_prime_UTR
CACATTGCATAACATTAGGA+TGG 0.599395 8_1:-1795928 None:intergenic
GAATTTGATCACAAAACTAG+AGG 0.600009 8_1:-1797639 None:intergenic
ACATTAACATATACTGGTGA+AGG 0.600599 8_1:-1797522 None:intergenic
AAACCAAAACAACAAATGTG+AGG 0.612820 8_1:+1798286 Msa1171880:CDS
TTGTTGGGAGTTCAAAGAAG+GGG 0.613896 8_1:+1797094 Msa1171880:five_prime_UTR
AAGCATGCAGAACCAAACAA+TGG 0.615428 8_1:+1798551 Msa1171880:CDS
GAAACAGATCTTGTTGGGAG+AGG 0.616533 8_1:+1800556 Msa1171880:CDS
GACTGGTGTAGTTTATGAGA+GGG 0.625917 8_1:+1800474 Msa1171880:CDS
TGTGACAACAAGGAAATGAA+AGG 0.626119 8_1:-1797377 None:intergenic
TTGCAAATCACCCTCCGAAG+AGG 0.629278 8_1:+1795758 Msa1171880:five_prime_UTR
GGACTGGTGTAGTTTATGAG+AGG 0.629860 8_1:+1800473 Msa1171880:CDS
CTTGTTGGGAGAGGAAGACG+AGG 0.636192 8_1:+1800565 Msa1171880:CDS
AATCAAATCTGCAGAAACGA+CGG 0.640914 8_1:-1800374 None:intergenic
GAAGGCAAGAGATGTTCTGT+CGG 0.647872 8_1:+1798523 Msa1171880:CDS
AATACACCCATTTGATCCTG+AGG 0.649632 8_1:+1798463 Msa1171880:CDS
TGTAGGTCGTCGTTTCCAAG+CGG 0.650107 8_1:+1800438 Msa1171880:CDS
TAAACTACACCAGTCCATTG+CGG 0.653393 8_1:-1800466 None:intergenic
CATTTGGTGATGGTTTCGGG+AGG 0.653419 8_1:+1800953 Msa1171880:CDS
AAATGGCGATTGTCTTGTCG+AGG 0.655256 8_1:+1797758 Msa1171880:CDS
GATCCTGAGGAGTATAAAGG+AGG 0.656179 8_1:+1798476 Msa1171880:CDS
AAGGAAGACAAGAAAAGACA+TGG 0.658301 8_1:+1800828 Msa1171880:CDS
AAATATCTGAGTGATTTCGA+AGG 0.658560 8_1:+1798047 Msa1171880:CDS
GGTTTGACAGAATCATGCAA+AGG 0.665715 8_1:-1800346 None:intergenic
TCCATGAAATCCATAGATGG+AGG 0.670812 8_1:-1800988 None:intergenic
AGAGATTTAAGGATGCGATG+GGG 0.691782 8_1:+1800749 Msa1171880:CDS
AAATTATTGAGAATTTATGG+TGG 0.691884 8_1:-1797294 None:intergenic
ATTGTATTAGAGGCAATGTG+AGG 0.692266 8_1:+1797850 Msa1171880:CDS
TTTGAGTAGACAAAACAGTG+TGG 0.748066 8_1:+1801039 Msa1171880:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATAATGAATTTCA+GGG + chr8_1:1795362-1795381 Msa1171880:intron 10.0%
!!! AAGATTTTCTAATTTTAAAA+TGG - chr8_1:1795508-1795527 None:intergenic 10.0%
!! TATATTTGATAAAAATTAAC+GGG + chr8_1:1796669-1796688 Msa1171880:intron 10.0%
!!! AAGATTTTGTAATTTTAAAA+CGG - chr8_1:1796771-1796790 None:intergenic 10.0%
!! AAAAAATAAAAATCAAACTT+GGG - chr8_1:1796921-1796940 None:intergenic 10.0%
!! AAAAAAATAAAAATCAAACT+TGG - chr8_1:1796922-1796941 None:intergenic 10.0%
!! CTAATACATAAAAAAAAAAA+TGG - chr8_1:1797404-1797423 None:intergenic 10.0%
!! TTAATATAATAAAGATATCA+GGG + chr8_1:1798844-1798863 Msa1171880:intron 10.0%
!!! TTGCATTTTTATTTTTTTAA+AGG + chr8_1:1799221-1799240 Msa1171880:intron 10.0%
!! AAATAAAAAAAAAATAGAAC+AGG - chr8_1:1799768-1799787 None:intergenic 10.0%
!!! ATTTTCATTTTTTTTATTAG+GGG + chr8_1:1799952-1799971 Msa1171880:intron 10.0%
!!! GATTTTTAATAATGAATTTC+AGG + chr8_1:1795361-1795380 Msa1171880:intron 15.0%
!!! ATTTAAAATGACAATAAACA+AGG - chr8_1:1795451-1795470 None:intergenic 15.0%
!!! ATTTTTATATTGTCTATACA+AGG + chr8_1:1795540-1795559 Msa1171880:intron 15.0%
!!! TTTTTTTTATTGTTTTCCAA+GGG + chr8_1:1795879-1795898 Msa1171880:intron 15.0%
!! TAAATTTCTTAAAACTCTTT+AGG - chr8_1:1795908-1795927 None:intergenic 15.0%
!!! TTTTTTTTATTGTTTTCCAA+GGG + chr8_1:1795879-1795898 Msa1171880:intron 15.0%
!!! TTTTGAATAACTTTTTTGAT+AGG - chr8_1:1796057-1796076 None:intergenic 15.0%
!!! CAAGTCTTATATATTTTAAA+AGG - chr8_1:1796179-1796198 None:intergenic 15.0%
!!! CAAAGATTAATATATTTTGT+TGG + chr8_1:1796337-1796356 Msa1171880:intron 15.0%
!!! TATAATTTAGAATTTGAGTT+GGG - chr8_1:1796554-1796573 None:intergenic 15.0%
!! ATATTTGATAAAAATTAACG+GGG + chr8_1:1796670-1796689 Msa1171880:intron 15.0%
!! AAAAATAAAAATCAAACTTG+GGG - chr8_1:1796920-1796939 None:intergenic 15.0%
!!! TTTATTTTTTTTATCATCGT+AGG + chr8_1:1796931-1796950 Msa1171880:intron 15.0%
!! ATATTAGGTTAAAATTCAAA+AGG - chr8_1:1797219-1797238 None:intergenic 15.0%
!! TGAAAATTATTGAGAATTTA+TGG - chr8_1:1797300-1797319 None:intergenic 15.0%
!! GTTAATATAATAAAGATATC+AGG + chr8_1:1798843-1798862 Msa1171880:intron 15.0%
!! TAATTTAGAAAATGATTATG+TGG + chr8_1:1799811-1799830 Msa1171880:intron 15.0%
!!! TTTTCATTTTTTTTATTAGG+GGG + chr8_1:1799953-1799972 Msa1171880:intron 15.0%
!! GTTATTACATAAAATACATA+GGG - chr8_1:1800066-1800085 None:intergenic 15.0%
!!! AGTTGTTCATTATTTTCTAA+GGG + chr8_1:1795332-1795351 Msa1171880:intron 20.0%
!!! GTTTTTTTTATTGTTTTCCA+AGG + chr8_1:1795878-1795897 Msa1171880:intron 20.0%
!!! GTTTTTTTTATTGTTTTCCA+AGG + chr8_1:1795878-1795897 Msa1171880:intron 20.0%
!!! ACGATTTTGTAATTTTAAAC+TGG - chr8_1:1796132-1796151 None:intergenic 20.0%
!! AATAATGATAAAATCTAACC+TGG - chr8_1:1796294-1796313 None:intergenic 20.0%
!!! GTATAATTTAGAATTTGAGT+TGG - chr8_1:1796555-1796574 None:intergenic 20.0%
!! TATTTGATAAAAATTAACGG+GGG + chr8_1:1796671-1796690 Msa1171880:intron 20.0%
!! TATTTCCTTAATCAAACTTA+GGG - chr8_1:1796883-1796902 None:intergenic 20.0%
!! TTTGATTAAGGAAATAGATT+CGG + chr8_1:1796887-1796906 Msa1171880:intron 20.0%
!! AAAATAAAAATCAAACTTGG+GGG - chr8_1:1796919-1796938 None:intergenic 20.0%
!! CTTTATAATGCTAAATACTA+GGG - chr8_1:1797027-1797046 None:intergenic 20.0%
!!! ATGTCAAAAAATCATTTTGT+TGG + chr8_1:1797078-1797097 Msa1171880:five_prime_UTR 20.0%
!!! TGTCAAAAAATCATTTTGTT+GGG + chr8_1:1797079-1797098 Msa1171880:five_prime_UTR 20.0%
!! AAATTATTGAGAATTTATGG+TGG - chr8_1:1797297-1797316 None:intergenic 20.0%
!! CTGCTAATAAAAATATCAAA+TGG + chr8_1:1797449-1797468 Msa1171880:five_prime_UTR 20.0%
!!! AATTGATAAAAGAGTATGAA+GGG - chr8_1:1797481-1797500 None:intergenic 20.0%
!!! AAATTGATAAAAGAGTATGA+AGG - chr8_1:1797482-1797501 None:intergenic 20.0%
!!! TAGTAAAAGTTTTAGTTTCA+AGG - chr8_1:1797728-1797747 None:intergenic 20.0%
!! TTTACTAAATTTCATGCAAA+TGG + chr8_1:1797741-1797760 Msa1171880:CDS 20.0%
!!! TATGTTTTGTCAATTTTCTT+CGG + chr8_1:1797812-1797831 Msa1171880:CDS 20.0%
!! AAGAAAAGAGTTTCAAAAAT+TGG + chr8_1:1798090-1798109 Msa1171880:CDS 20.0%
!!! TTATACATGATTTTACACAT+TGG + chr8_1:1798613-1798632 Msa1171880:intron 20.0%
!!! TGATTTTGAATACTTGATTT+CGG - chr8_1:1799257-1799276 None:intergenic 20.0%
!! AAAAAAAAAATAGAACAGGA+AGG - chr8_1:1799764-1799783 None:intergenic 20.0%
!! CGTTATTACATAAAATACAT+AGG - chr8_1:1800067-1800086 None:intergenic 20.0%
!! CTAAATTATCTATCAAACTA+TGG - chr8_1:1800156-1800175 None:intergenic 20.0%
!!! ACAAATAAAATTCCATCTTT+TGG - chr8_1:1800265-1800284 None:intergenic 20.0%
!!! GGAATTTTATTTGTATTATG+TGG + chr8_1:1800271-1800290 Msa1171880:intron 20.0%
!! ACATATATCTGTTGTTAAAA+TGG + chr8_1:1801111-1801130 Msa1171880:three_prime_UTR 20.0%
!! GAGTTGTTCATTATTTTCTA+AGG + chr8_1:1795331-1795350 Msa1171880:intron 25.0%
!! TGTGTAGTTTTTATAAAGCT+TGG + chr8_1:1796485-1796504 Msa1171880:intron 25.0%
!! GTGTAGTTTTTATAAAGCTT+GGG + chr8_1:1796486-1796505 Msa1171880:intron 25.0%
! CAAATTCTAAATTATACACG+AGG + chr8_1:1796558-1796577 Msa1171880:intron 25.0%
! ATTTGATAAAAATTAACGGG+GGG + chr8_1:1796672-1796691 Msa1171880:intron 25.0%
!! ATTGTCTTTTACCATGTATA+AGG + chr8_1:1796811-1796830 Msa1171880:intron 25.0%
! ACATATGAAAACCTTATACA+TGG - chr8_1:1796825-1796844 None:intergenic 25.0%
! CTATTTCCTTAATCAAACTT+AGG - chr8_1:1796884-1796903 None:intergenic 25.0%
! AAATAAAAATCAAACTTGGG+GGG - chr8_1:1796918-1796937 None:intergenic 25.0%
! TAAATACTAGGGTTGTTAAT+TGG - chr8_1:1797016-1797035 None:intergenic 25.0%
! CCTTTATAATGCTAAATACT+AGG - chr8_1:1797028-1797047 None:intergenic 25.0%
! CCTAGTATTTAGCATTATAA+AGG + chr8_1:1797025-1797044 Msa1171880:five_prime_UTR 25.0%
! AAAAAAGTGAGCTGAATATT+AGG - chr8_1:1797234-1797253 None:intergenic 25.0%
! GACATAACATTAACATATAC+TGG - chr8_1:1797531-1797550 None:intergenic 25.0%
!! TGTACTTTTGTATATGTTGA+TGG - chr8_1:1797594-1797613 None:intergenic 25.0%
!! TGACAAAACATAGATTTTTG+AGG - chr8_1:1797804-1797823 None:intergenic 25.0%
! AAGAGTTTCAAAAATTGGAA+TGG + chr8_1:1798095-1798114 Msa1171880:CDS 25.0%
! ATGTGCTTAATTATGTTACA+TGG - chr8_1:1798221-1798240 None:intergenic 25.0%
!! CATAATTAAGCACATTGATT+TGG + chr8_1:1798226-1798245 Msa1171880:CDS 25.0%
! AGAATGAAATTCAAAAGAAG+CGG - chr8_1:1798387-1798406 None:intergenic 25.0%
! GGTCAATAATAAAGATATCA+GGG + chr8_1:1798865-1798884 Msa1171880:intron 25.0%
! ATATAGATACACACATCAAT+TGG - chr8_1:1799046-1799065 None:intergenic 25.0%
! ATTGATGTGTGTATCTATAT+TGG + chr8_1:1799046-1799065 Msa1171880:intron 25.0%
! AAGCAAAGAGAAAAAAAAGA+CGG - chr8_1:1799330-1799349 None:intergenic 25.0%
! TAAATTAGTAATTACAGACG+TGG + chr8_1:1799851-1799870 Msa1171880:intron 25.0%
! ATTATCTATCAAACTATGGT+TGG - chr8_1:1800152-1800171 None:intergenic 25.0%
!!! GGTTTTGAATGATTTTTAAC+AGG - chr8_1:1800529-1800548 None:intergenic 25.0%
! TGATGAAGAAAAGAGATTTA+AGG + chr8_1:1800738-1800757 Msa1171880:CDS 25.0%
ACATTTCATCAACATTAGGA+TGG - chr8_1:1795311-1795330 None:intergenic 30.0%
ACTCACATTTCATCAACATT+AGG - chr8_1:1795315-1795334 None:intergenic 30.0%
!!! CAAGGAAGCATTTTTTTGAT+AGG - chr8_1:1795433-1795452 None:intergenic 30.0%
CAAACTTAGGCAAATGTATT+AGG - chr8_1:1795599-1795618 None:intergenic 30.0%
GGTATGCAATAATCAAACTT+AGG - chr8_1:1795612-1795631 None:intergenic 30.0%
AACTCACATTGCATAACATT+AGG - chr8_1:1795861-1795880 None:intergenic 30.0%
AACTCACATTGCATAACATT+AGG - chr8_1:1795861-1795880 None:intergenic 30.0%
!!! ACACCTAAAGAGTTTTAAGA+AGG + chr8_1:1795902-1795921 Msa1171880:five_prime_UTR 30.0%
CTTCCTTCTTAAAACTCTTT+AGG - chr8_1:1795982-1796001 None:intergenic 30.0%
!!! AGTTTTAAGAAGGAAGTTCA+GGG + chr8_1:1795986-1796005 Msa1171880:five_prime_UTR 30.0%
AACGAACATGACTACTAATT+TGG + chr8_1:1796022-1796041 Msa1171880:five_prime_UTR 30.0%
TGATAAAATCTAACCTGGTT+AGG - chr8_1:1796289-1796308 None:intergenic 30.0%
TAACTCAAGCTTATTAAACC+GGG - chr8_1:1796529-1796548 None:intergenic 30.0%
CTAACTCAAGCTTATTAAAC+CGG - chr8_1:1796530-1796549 None:intergenic 30.0%
TTTGATAAAAATTAACGGGG+GGG + chr8_1:1796673-1796692 Msa1171880:intron 30.0%
CAAGATTTGAGAAATGACTT+TGG - chr8_1:1796718-1796737 None:intergenic 30.0%
AAAGAAGGGGAATGAAATAA+AGG + chr8_1:1797107-1797126 Msa1171880:five_prime_UTR 30.0%
ATCGCGAAAACAAATGATTA+AGG - chr8_1:1797185-1797204 None:intergenic 30.0%
! TTTGCAGCATTGAAATTCAA+CGG + chr8_1:1797256-1797275 Msa1171880:intron 30.0%
ACATTAACATATACTGGTGA+AGG - chr8_1:1797525-1797544 None:intergenic 30.0%
! CATATACAAAAGTACAAGCT+AGG + chr8_1:1797598-1797617 Msa1171880:five_prime_UTR 30.0%
GAATTTGATCACAAAACTAG+AGG - chr8_1:1797642-1797661 None:intergenic 30.0%
AAATATCTGAGTGATTTCGA+AGG + chr8_1:1798047-1798066 Msa1171880:CDS 30.0%
AGTTTCAAAAATTGGAATGG+TGG + chr8_1:1798098-1798117 Msa1171880:CDS 30.0%
GTTTCAAAAATTGGAATGGT+GGG + chr8_1:1798099-1798118 Msa1171880:CDS 30.0%
! AGCTCTTTTTCTAGATCTAT+TGG - chr8_1:1798140-1798159 None:intergenic 30.0%
ATAAATTACCATCACTCTTG+TGG - chr8_1:1798256-1798275 None:intergenic 30.0%
CAAGAGTGATGGTAATTTAT+TGG + chr8_1:1798256-1798275 Msa1171880:CDS 30.0%
AAACCAAAACAACAAATGTG+AGG + chr8_1:1798286-1798305 Msa1171880:CDS 30.0%
AACCAAAACAACAAATGTGA+GGG + chr8_1:1798287-1798306 Msa1171880:CDS 30.0%
! TACCATCACCGTTAAAATTT+TGG - chr8_1:1798316-1798335 None:intergenic 30.0%
GAGGATGACAATGAAAAATT+CGG + chr8_1:1798338-1798357 Msa1171880:CDS 30.0%
ACGTAAAAGGGAATCATTAT+CGG + chr8_1:1798412-1798431 Msa1171880:CDS 30.0%
CATTATCGGAAATGATAAAC+TGG + chr8_1:1798426-1798445 Msa1171880:CDS 30.0%
GGGTCAATAATAAAGATATC+AGG + chr8_1:1798864-1798883 Msa1171880:intron 30.0%
AGTGCAGTTACAATTCTTAA+TGG - chr8_1:1798957-1798976 None:intergenic 30.0%
!! CACATCAATTGGTATTGATT+GGG - chr8_1:1799035-1799054 None:intergenic 30.0%
!! ACACATCAATTGGTATTGAT+TGG - chr8_1:1799036-1799055 None:intergenic 30.0%
GTGAATTGTGTGATTTAGTT+GGG - chr8_1:1799128-1799147 None:intergenic 30.0%
TGTGAATTGTGTGATTTAGT+TGG - chr8_1:1799129-1799148 None:intergenic 30.0%
TATTTACATACCAGTATGCA+CGG - chr8_1:1799186-1799205 None:intergenic 30.0%
GTATGTAAATATCCTGTCAA+TGG + chr8_1:1799195-1799214 Msa1171880:intron 30.0%
AAAATGCAAAAACCATTGAC+AGG - chr8_1:1799210-1799229 None:intergenic 30.0%
AGCAAAGAGAAAAAAAAGAC+GGG - chr8_1:1799329-1799348 None:intergenic 30.0%
TATGAATGCTACGTAAAAAC+AGG - chr8_1:1799359-1799378 None:intergenic 30.0%
! TTTTACGTAGCATTCATAGA+AGG + chr8_1:1799361-1799380 Msa1171880:intron 30.0%
AACTTCAGTAACAACAACAA+TGG - chr8_1:1799406-1799425 None:intergenic 30.0%
ATTTGATGTTGTAGATGTTG+TGG + chr8_1:1799444-1799463 Msa1171880:intron 30.0%
AGATTTGATTAAGCCATCTT+GGG + chr8_1:1800387-1800406 Msa1171880:CDS 30.0%
ACCAAACTGAAGTTTGAATT+GGG + chr8_1:1800652-1800671 Msa1171880:CDS 30.0%
CATTGGGGATTTGATAAAAT+GGG + chr8_1:1800688-1800707 Msa1171880:CDS 30.0%
!!! AAAAAGACTTGTTTTGGGAA+GGG - chr8_1:1800783-1800802 None:intergenic 30.0%
!! GTTCCAAAAAGACTTGTTTT+GGG - chr8_1:1800788-1800807 None:intergenic 30.0%
!! TGTTCCAAAAAGACTTGTTT+TGG - chr8_1:1800789-1800808 None:intergenic 30.0%
! TCCTTTGAAAGTATATGGAT+GGG - chr8_1:1800813-1800832 None:intergenic 30.0%
! TTCCTTTGAAAGTATATGGA+TGG - chr8_1:1800814-1800833 None:intergenic 30.0%
! TGTCTTCCTTTGAAAGTATA+TGG - chr8_1:1800818-1800837 None:intergenic 30.0%
TAACAAAGTCTGACCTGATT+AGG - chr8_1:1795638-1795657 None:intergenic 35.0%
! AGTTTAAGTGAGTTGAGCTT+CGG + chr8_1:1795680-1795699 Msa1171880:intron 35.0%
! TGATTTGCAAGTACCTTTCT+TGG - chr8_1:1795748-1795767 None:intergenic 35.0%
CACATTGCATAACATTAGGA+TGG - chr8_1:1795857-1795876 None:intergenic 35.0%
CACATTGCATAACATTAGGA+TGG - chr8_1:1795857-1795876 None:intergenic 35.0%
!!! GAGTTTTAAGAAGGAAGTTC+AGG + chr8_1:1795985-1796004 Msa1171880:five_prime_UTR 35.0%
! ATCCAACACAATGAAAGTGT+TGG - chr8_1:1796422-1796441 None:intergenic 35.0%
TTCATTGTGTTGGATGTGAA+TGG + chr8_1:1796427-1796446 Msa1171880:intron 35.0%
CGGTTTAATAAGCTTGAGTT+AGG + chr8_1:1796528-1796547 Msa1171880:intron 35.0%
CAAACTTAGGGAGATGTATT+TGG - chr8_1:1796871-1796890 None:intergenic 35.0%
CATCTCCCTAAGTTTGATTA+AGG + chr8_1:1796875-1796894 Msa1171880:intron 35.0%
! TTGACTTGACCTAATCGATT+CGG + chr8_1:1796955-1796974 Msa1171880:five_prime_UTR 35.0%
TACTAGGGTTGTTAATTGGT+GGG - chr8_1:1797012-1797031 None:intergenic 35.0%
ATACTAGGGTTGTTAATTGG+TGG - chr8_1:1797013-1797032 None:intergenic 35.0%
! TTTTGTTGGGAGTTCAAAGA+AGG + chr8_1:1797092-1797111 Msa1171880:five_prime_UTR 35.0%
TTTGTTGGGAGTTCAAAGAA+GGG + chr8_1:1797093-1797112 Msa1171880:five_prime_UTR 35.0%
GAATTTATGGTGGTACTAAC+TGG - chr8_1:1797287-1797306 None:intergenic 35.0%
TGTGACAACAAGGAAATGAA+AGG - chr8_1:1797380-1797399 None:intergenic 35.0%
AAAAAATGGCTGTGACAACA+AGG - chr8_1:1797390-1797409 None:intergenic 35.0%
! TTTAGTTTCAAGGCGATCAA+GGG - chr8_1:1797718-1797737 None:intergenic 35.0%
!!! TTTTAGTTTCAAGGCGATCA+AGG - chr8_1:1797719-1797738 None:intergenic 35.0%
! ATTTTCTTCGGTTTACCAAG+AGG + chr8_1:1797824-1797843 Msa1171880:CDS 35.0%
CTCTAATACAATTCTCCTCT+TGG - chr8_1:1797842-1797861 None:intergenic 35.0%
CAAGAGGAGAATTGTATTAG+AGG + chr8_1:1797840-1797859 Msa1171880:CDS 35.0%
ATTGTATTAGAGGCAATGTG+AGG + chr8_1:1797850-1797869 Msa1171880:CDS 35.0%
TCACTGAAGCCAAAACATTA+AGG - chr8_1:1798013-1798032 None:intergenic 35.0%
CCTTTAGATTTGAGAATGAG+AGG - chr8_1:1798169-1798188 None:intergenic 35.0%
CCTCTCATTCTCAAATCTAA+AGG + chr8_1:1798166-1798185 Msa1171880:CDS 35.0%
!!! GAGGGTGTCCAAAATTTTAA+CGG + chr8_1:1798305-1798324 Msa1171880:CDS 35.0%
!! GTCCAAAATTTTAACGGTGA+TGG + chr8_1:1798311-1798330 Msa1171880:CDS 35.0%
!! TTTTAACGGTGATGGTAATG+AGG + chr8_1:1798319-1798338 Msa1171880:CDS 35.0%
TTCATTCTCGCAAACGTAAA+AGG + chr8_1:1798399-1798418 Msa1171880:CDS 35.0%
TCATTCTCGCAAACGTAAAA+GGG + chr8_1:1798400-1798419 Msa1171880:CDS 35.0%
TATACTCCTCAGGATCAAAT+GGG - chr8_1:1798472-1798491 None:intergenic 35.0%
TTATACTCCTCAGGATCAAA+TGG - chr8_1:1798473-1798492 None:intergenic 35.0%
! TTTGATCCTGAGGAGTATAA+AGG + chr8_1:1798473-1798492 Msa1171880:CDS 35.0%
!!! CTTTTTTGTTCAGATGCTGA+AGG + chr8_1:1798505-1798524 Msa1171880:CDS 35.0%
!! TTTGATGATGACCCATTGTT+TGG - chr8_1:1798566-1798585 None:intergenic 35.0%
AAACAATGGGTCATCATCAA+AGG + chr8_1:1798565-1798584 Msa1171880:CDS 35.0%
!! ATGTGAAAACATTCTGGTTC+AGG - chr8_1:1798657-1798676 None:intergenic 35.0%
CCATTCATGTGAAAACATTC+TGG - chr8_1:1798663-1798682 None:intergenic 35.0%
! CCAGAATGTTTTCACATGAA+TGG + chr8_1:1798660-1798679 Msa1171880:intron 35.0%
!! CATGATTTGCATTTTGCTGT+GGG + chr8_1:1799077-1799096 Msa1171880:intron 35.0%
CTTCAACGGTGATTCAAATT+TGG - chr8_1:1799281-1799300 None:intergenic 35.0%
TGTTGTTACTGAAGTTGTTG+TGG + chr8_1:1799410-1799429 Msa1171880:intron 35.0%
CAACAACAACACTGATCTAA+AGG - chr8_1:1799488-1799507 None:intergenic 35.0%
! CTTTAGATCAGTGTTGTTGT+TGG + chr8_1:1799486-1799505 Msa1171880:intron 35.0%
AGCTGTTGTAGTTACACATT+TGG + chr8_1:1799509-1799528 Msa1171880:intron 35.0%
TAAGGAGATGAATCAAGAAG+AGG + chr8_1:1799565-1799584 Msa1171880:intron 35.0%
AAGAAGAGGTGGAAGATAAA+CGG + chr8_1:1799579-1799598 Msa1171880:intron 35.0%
CAAAAGAGCAACATTGGAAA+TGG - chr8_1:1799715-1799734 None:intergenic 35.0%
GTGTTTCAAAAGAGCAACAT+TGG - chr8_1:1799721-1799740 None:intergenic 35.0%
ATAGAACAGGAAGGATGAAT+GGG - chr8_1:1799755-1799774 None:intergenic 35.0%
AATAGAACAGGAAGGATGAA+TGG - chr8_1:1799756-1799775 None:intergenic 35.0%
!!! CAAAAGGTCACTTTTGCAAA+GGG + chr8_1:1799909-1799928 Msa1171880:intron 35.0%
!!! AAAAGGTCACTTTTGCAAAG+GGG + chr8_1:1799910-1799929 Msa1171880:intron 35.0%
! CTTTGTCAATGTTGCGATTT+TGG - chr8_1:1799979-1799998 None:intergenic 35.0%
ATCGCAACATTGACAAAGTT+AGG + chr8_1:1799981-1800000 Msa1171880:intron 35.0%
TCGCAACATTGACAAAGTTA+GGG + chr8_1:1799982-1800001 Msa1171880:intron 35.0%
ATAAGCAGTGCATAAGGTTT+AGG - chr8_1:1800028-1800047 None:intergenic 35.0%
GAACTTGCCATGTTATTGTT+TGG + chr8_1:1800090-1800109 Msa1171880:intron 35.0%
CAGATCTCCAAACAATAACA+TGG - chr8_1:1800100-1800119 None:intergenic 35.0%
! ATCTTTTGGATCTTGTCTAC+TGG - chr8_1:1800251-1800270 None:intergenic 35.0%
AGTAGACAAGATCCAAAAGA+TGG + chr8_1:1800250-1800269 Msa1171880:intron 35.0%
AATCAAATCTGCAGAAACGA+CGG - chr8_1:1800377-1800396 None:intergenic 35.0%
CAGATTTGATTAAGCCATCT+TGG + chr8_1:1800386-1800405 Msa1171880:CDS 35.0%
ACAAGATCTGTTTCAGTTGT+AGG - chr8_1:1800550-1800569 None:intergenic 35.0%
ACAACTGAAACAGATCTTGT+TGG + chr8_1:1800550-1800569 Msa1171880:CDS 35.0%
CAACTGAAACAGATCTTGTT+GGG + chr8_1:1800551-1800570 Msa1171880:CDS 35.0%
GACCAAACTGAAGTTTGAAT+TGG + chr8_1:1800651-1800670 Msa1171880:CDS 35.0%
ACCCAATTCAAACTTCAGTT+TGG - chr8_1:1800656-1800675 None:intergenic 35.0%
! CCATTTTATCAAATCCCCAA+TGG - chr8_1:1800690-1800709 None:intergenic 35.0%
CCATTGGGGATTTGATAAAA+TGG + chr8_1:1800687-1800706 Msa1171880:CDS 35.0%
AAAGAGATTTAAGGATGCGA+TGG + chr8_1:1800747-1800766 Msa1171880:CDS 35.0%
AAGAGATTTAAGGATGCGAT+GGG + chr8_1:1800748-1800767 Msa1171880:CDS 35.0%
!!! CAAAAAGACTTGTTTTGGGA+AGG - chr8_1:1800784-1800803 None:intergenic 35.0%
! CTTCCCAAAACAAGTCTTTT+TGG + chr8_1:1800782-1800801 Msa1171880:CDS 35.0%
ACCCATCCATATACTTTCAA+AGG + chr8_1:1800809-1800828 Msa1171880:CDS 35.0%
AAGGAAGACAAGAAAAGACA+TGG + chr8_1:1800828-1800847 Msa1171880:CDS 35.0%
GAAGTTGAGTTTGGATCATT+TGG + chr8_1:1800937-1800956 Msa1171880:CDS 35.0%
TTTGAGTAGACAAAACAGTG+TGG + chr8_1:1801039-1801058 Msa1171880:exon 35.0%
CTACAAGTTCTTCCTCAAAA+TGG - chr8_1:1801069-1801088 None:intergenic 35.0%
ATTGCATACCTGACCTAATC+AGG + chr8_1:1795622-1795641 Msa1171880:intron 40.0%
! GTTTAAGTGAGTTGAGCTTC+GGG + chr8_1:1795681-1795700 Msa1171880:intron 40.0%
! TTTAAGTGAGTTGAGCTTCG+GGG + chr8_1:1795682-1795701 Msa1171880:intron 40.0%
AAAACTCTTTAGGTGTCCCT+TGG - chr8_1:1795898-1795917 None:intergenic 40.0%
AAAACTCTTTAGGTGTCCCT+TGG - chr8_1:1795898-1795917 None:intergenic 40.0%
CAAGCGTAGGAGAATGTATT+GGG - chr8_1:1796250-1796269 None:intergenic 40.0%
TCAAGCGTAGGAGAATGTAT+TGG - chr8_1:1796251-1796270 None:intergenic 40.0%
AAATCTAACCTGGTTAGGTC+AGG - chr8_1:1796284-1796303 None:intergenic 40.0%
AACCAAATGTCGCAATTAGG+CGG - chr8_1:1796384-1796403 None:intergenic 40.0%
!! CAACACAATGAAAGTGTTGG+AGG - chr8_1:1796419-1796438 None:intergenic 40.0%
CTCCAACACTTTCATTGTGT+TGG + chr8_1:1796417-1796436 Msa1171880:intron 40.0%
ATTGTGTTGGATGTGAATGG+TGG + chr8_1:1796430-1796449 Msa1171880:intron 40.0%
TTGTGTTGGATGTGAATGGT+GGG + chr8_1:1796431-1796450 Msa1171880:intron 40.0%
TATAGTCCCACATTGCTTAG+AGG + chr8_1:1796455-1796474 Msa1171880:intron 40.0%
GCTTATTAAACCGGGTTGTA+AGG - chr8_1:1796521-1796540 None:intergenic 40.0%
! TGACTTGACCTAATCGATTC+GGG + chr8_1:1796956-1796975 Msa1171880:five_prime_UTR 40.0%
!! CTAATCGATTCGGGCTTTAT+CGG + chr8_1:1796965-1796984 Msa1171880:five_prime_UTR 40.0%
TTTATCGGACCGGACTAAAA+TGG + chr8_1:1796980-1796999 Msa1171880:five_prime_UTR 40.0%
TTATCGGACCGGACTAAAAT+GGG + chr8_1:1796981-1797000 Msa1171880:five_prime_UTR 40.0%
TTGTTGGGAGTTCAAAGAAG+GGG + chr8_1:1797094-1797113 Msa1171880:five_prime_UTR 40.0%
ATTAAACCCTCCTCTTCTCT+CGG - chr8_1:1797145-1797164 None:intergenic 40.0%
TCATTGCAGTGTGAAGAGAT+AGG - chr8_1:1797355-1797374 None:intergenic 40.0%
ATGTATTAGTTGCCAGCTAG+AGG + chr8_1:1797415-1797434 Msa1171880:five_prime_UTR 40.0%
AGTAGTGAGTCACTAGTTCA+TGG + chr8_1:1797680-1797699 Msa1171880:exon 40.0%
AGTCACTAGTTCATGGCAAA+CGG + chr8_1:1797687-1797706 Msa1171880:exon 40.0%
TTCTCCCTTGTGAAGGAAAA+AGG + chr8_1:1797924-1797943 Msa1171880:CDS 40.0%
! TATGCTGCAGTATCGAGAAA+AGG + chr8_1:1797951-1797970 Msa1171880:CDS 40.0%
! ATGCTGCAGTATCGAGAAAA+GGG + chr8_1:1797952-1797971 Msa1171880:CDS 40.0%
! AGTATCGAGAAAAGGGTTGT+GGG + chr8_1:1797959-1797978 Msa1171880:CDS 40.0%
GACTCTGTGATAGTTGATCT+GGG + chr8_1:1797981-1798000 Msa1171880:CDS 40.0%
TGTGATAGTTGATCTGGGTT+TGG + chr8_1:1797986-1798005 Msa1171880:CDS 40.0%
! GGGTTTGGACCTTAATGTTT+TGG + chr8_1:1798001-1798020 Msa1171880:CDS 40.0%
ATCTGAGTGATTTCGAAGGT+TGG + chr8_1:1798051-1798070 Msa1171880:CDS 40.0%
GATTTGAGAATGAGAGGCTT+TGG - chr8_1:1798163-1798182 None:intergenic 40.0%
TTGGTTAACCACAAGAGTGA+TGG + chr8_1:1798245-1798264 Msa1171880:CDS 40.0%
!!! CACCCTCACATTTGTTGTTT+TGG - chr8_1:1798292-1798311 None:intergenic 40.0%
GACAATGAAAAATTCGGCAC+TGG + chr8_1:1798344-1798363 Msa1171880:CDS 40.0%
AATACACCCATTTGATCCTG+AGG + chr8_1:1798463-1798482 Msa1171880:CDS 40.0%
AAGCATGCAGAACCAAACAA+TGG + chr8_1:1798551-1798570 Msa1171880:CDS 40.0%
AGCATGCAGAACCAAACAAT+GGG + chr8_1:1798552-1798571 Msa1171880:CDS 40.0%
! CAGTTAGCAAGCTGAGATTT+TGG - chr8_1:1798806-1798825 None:intergenic 40.0%
TGTAACTGCACTATTGAGCT+TGG + chr8_1:1798965-1798984 Msa1171880:intron 40.0%
!! GCATGATTTGCATTTTGCTG+TGG + chr8_1:1799076-1799095 Msa1171880:intron 40.0%
ACACAATTCACATTCTGCTG+CGG + chr8_1:1799137-1799156 Msa1171880:intron 40.0%
AGTGTACTAGAGCTCTTCAA+CGG - chr8_1:1799295-1799314 None:intergenic 40.0%
GCTCTAGTACACTATGTGTT+TGG + chr8_1:1799302-1799321 Msa1171880:intron 40.0%
TGTAGATGTTGTGGAGAAAC+AGG + chr8_1:1799453-1799472 Msa1171880:intron 40.0%
TAAACGGAAGAAGGTGAAGT+TGG + chr8_1:1799595-1799614 Msa1171880:intron 40.0%
!!! CTTTTTTGCACCTCTTGTGA+TGG + chr8_1:1799672-1799691 Msa1171880:intron 40.0%
! CCTTTGCAAAAGTGACCTTT+TGG - chr8_1:1799911-1799930 None:intergenic 40.0%
!!! CCAAAAGGTCACTTTTGCAA+AGG + chr8_1:1799908-1799927 Msa1171880:intron 40.0%
TTGCAAAGGGGCTAAAACTT+AGG + chr8_1:1799922-1799941 Msa1171880:intron 40.0%
TGCAAAGGGGCTAAAACTTA+GGG + chr8_1:1799923-1799942 Msa1171880:intron 40.0%
CGCAACATTGACAAAGTTAG+GGG + chr8_1:1799983-1800002 Msa1171880:intron 40.0%
GCAACATTGACAAAGTTAGG+GGG + chr8_1:1799984-1800003 Msa1171880:intron 40.0%
AGAGTCATAAGCAGTGCATA+AGG - chr8_1:1800034-1800053 None:intergenic 40.0%
TTATGCACTGCTTATGACTC+TGG + chr8_1:1800033-1800052 Msa1171880:intron 40.0%
! TCTGAAACTGTCTCCTTTAC+AGG + chr8_1:1800312-1800331 Msa1171880:intron 40.0%
GGTTTGACAGAATCATGCAA+AGG - chr8_1:1800349-1800368 None:intergenic 40.0%
!! CGTGAAAAGCTTGTTTCTGT+AGG + chr8_1:1800421-1800440 Msa1171880:CDS 40.0%
TAAACTACACCAGTCCATTG+CGG - chr8_1:1800469-1800488 None:intergenic 40.0%
GACTGGTGTAGTTTATGAGA+GGG + chr8_1:1800474-1800493 Msa1171880:CDS 40.0%
TTTATGAGAGGGACTCCAAA+TGG + chr8_1:1800485-1800504 Msa1171880:CDS 40.0%
TACTTGTGTGCCTAACCATT+TGG - chr8_1:1800503-1800522 None:intergenic 40.0%
AATGGTTAGGCACACAAGTA+TGG + chr8_1:1800503-1800522 Msa1171880:CDS 40.0%
AAGTGTAGCTGCAATGTTCA+AGG + chr8_1:1800589-1800608 Msa1171880:CDS 40.0%
GACTTCATATTGCTGCAAAC+AGG + chr8_1:1800629-1800648 Msa1171880:CDS 40.0%
! TGGGTTCTGCATTTTACCAT+TGG + chr8_1:1800671-1800690 Msa1171880:CDS 40.0%
! GGGTTCTGCATTTTACCATT+GGG + chr8_1:1800672-1800691 Msa1171880:CDS 40.0%
! GGTTCTGCATTTTACCATTG+GGG + chr8_1:1800673-1800692 Msa1171880:CDS 40.0%
AGAGATTTAAGGATGCGATG+GGG + chr8_1:1800749-1800768 Msa1171880:CDS 40.0%
GACTATGAGGAAGTTGAGTT+TGG + chr8_1:1800928-1800947 Msa1171880:CDS 40.0%
! GAGTTTGGATCATTTGGTGA+TGG + chr8_1:1800943-1800962 Msa1171880:CDS 40.0%
!! GGATCATTTGGTGATGGTTT+CGG + chr8_1:1800949-1800968 Msa1171880:CDS 40.0%
!! GATCATTTGGTGATGGTTTC+GGG + chr8_1:1800950-1800969 Msa1171880:CDS 40.0%
TCCATGAAATCCATAGATGG+AGG - chr8_1:1800991-1801010 None:intergenic 40.0%
CACTCCATGAAATCCATAGA+TGG - chr8_1:1800994-1801013 None:intergenic 40.0%
GAATTTCAGGGTTCAAACCC+TGG + chr8_1:1795374-1795393 Msa1171880:intron 45.0%
AGTAGTCATGCTCGTTTCCA+GGG - chr8_1:1795394-1795413 None:intergenic 45.0%
TAGTAGTCATGCTCGTTTCC+AGG - chr8_1:1795395-1795414 None:intergenic 45.0%
AAGTCTGACCTGATTAGGTC+AGG - chr8_1:1795633-1795652 None:intergenic 45.0%
! TTAAGTGAGTTGAGCTTCGG+GGG + chr8_1:1795683-1795702 Msa1171880:intron 45.0%
GGTATGCGATAATCAAGCGT+AGG - chr8_1:1796263-1796282 None:intergenic 45.0%
TGGAAATCCCGCTTTCATTG+CGG + chr8_1:1796357-1796376 Msa1171880:intron 45.0%
GGCAACCAAATGTCGCAATT+AGG - chr8_1:1796387-1796406 None:intergenic 45.0%
!! AAGTGTTGGAGGTTGCAAGA+AGG - chr8_1:1796408-1796427 None:intergenic 45.0%
TCCCACATTGCTTAGAGGTA+TGG + chr8_1:1796460-1796479 Msa1171880:intron 45.0%
GCCATACCTCTAAGCAATGT+GGG - chr8_1:1796464-1796483 None:intergenic 45.0%
TGCCATACCTCTAAGCAATG+TGG - chr8_1:1796465-1796484 None:intergenic 45.0%
AAAAATTAACGGGGGGGCTT+TGG + chr8_1:1796679-1796698 Msa1171880:intron 45.0%
AAAATTAACGGGGGGGCTTT+GGG + chr8_1:1796680-1796699 Msa1171880:intron 45.0%
CGATAAAGCCCGAATCGATT+AGG - chr8_1:1796967-1796986 None:intergenic 45.0%
ACAAAATACCCCGAGAGAAG+AGG + chr8_1:1797132-1797151 Msa1171880:intron 45.0%
TTAAACCCTCCTCTTCTCTC+GGG - chr8_1:1797144-1797163 None:intergenic 45.0%
GTCACTAGTTCATGGCAAAC+GGG + chr8_1:1797688-1797707 Msa1171880:exon 45.0%
AAATGGCGATTGTCTTGTCG+AGG + chr8_1:1797758-1797777 Msa1171880:CDS 45.0%
TGAGGATCAGCACTATCAAC+AGG - chr8_1:1797786-1797805 None:intergenic 45.0%
CCTTCACAAGGGAGAAAAGT+TGG - chr8_1:1797920-1797939 None:intergenic 45.0%
! CCAACTTTTCTCCCTTGTGA+AGG + chr8_1:1797917-1797936 Msa1171880:CDS 45.0%
TCCCTTGTGAAGGAAAAAGG+AGG + chr8_1:1797927-1797946 Msa1171880:CDS 45.0%
! CCCTCCTTTTTCCTTCACAA+GGG - chr8_1:1797931-1797950 None:intergenic 45.0%
CCCTTGTGAAGGAAAAAGGA+GGG + chr8_1:1797928-1797947 Msa1171880:CDS 45.0%
! ACCCTCCTTTTTCCTTCACA+AGG - chr8_1:1797932-1797951 None:intergenic 45.0%
! CAGTATCGAGAAAAGGGTTG+TGG + chr8_1:1797958-1797977 Msa1171880:CDS 45.0%
GGACTCTGTGATAGTTGATC+TGG + chr8_1:1797980-1797999 Msa1171880:CDS 45.0%
!! AAAATTCGGCACTGGTGTCA+AGG + chr8_1:1798352-1798371 Msa1171880:CDS 45.0%
! GATCCTGAGGAGTATAAAGG+AGG + chr8_1:1798476-1798495 Msa1171880:CDS 45.0%
! TGAGGAGTATAAAGGAGGCT+GGG + chr8_1:1798481-1798500 Msa1171880:CDS 45.0%
GAAGGCAAGAGATGTTCTGT+CGG + chr8_1:1798523-1798542 Msa1171880:CDS 45.0%
!! CTCAGCTTGCTAACTGCTAT+AGG + chr8_1:1798810-1798829 Msa1171880:intron 45.0%
! GCACAACCTTGAAATGGACT+GGG + chr8_1:1799099-1799118 Msa1171880:intron 45.0%
CACAATTCACATTCTGCTGC+GGG + chr8_1:1799138-1799157 Msa1171880:intron 45.0%
GTGCAGCCTTAAAACGGATA+GGG + chr8_1:1799160-1799179 Msa1171880:intron 45.0%
GGAGATGAATCAAGAAGAGG+TGG + chr8_1:1799568-1799587 Msa1171880:intron 45.0%
GGTGGAAGATAAACGGAAGA+AGG + chr8_1:1799586-1799605 Msa1171880:intron 45.0%
! GAAGAAGGTGAAGTTGGTTC+TGG + chr8_1:1799601-1799620 Msa1171880:intron 45.0%
!! GGCTGAGTTTGAGGCTATTT+TGG + chr8_1:1799648-1799667 Msa1171880:intron 45.0%
!! CCTTTTGGCCAATTTTGACC+AGG - chr8_1:1799896-1799915 None:intergenic 45.0%
CCTGGTCAAAATTGGCCAAA+AGG + chr8_1:1799893-1799912 Msa1171880:intron 45.0%
GCAAAGGGGCTAAAACTTAG+GGG + chr8_1:1799924-1799943 Msa1171880:intron 45.0%
CAAAGGGGCTAAAACTTAGG+GGG + chr8_1:1799925-1799944 Msa1171880:intron 45.0%
GGATGCATCTTCACCTGTAA+AGG - chr8_1:1800328-1800347 None:intergenic 45.0%
CGAGAATCATCATCCCAAGA+TGG - chr8_1:1800403-1800422 None:intergenic 45.0%
AAACTACACCAGTCCATTGC+GGG - chr8_1:1800468-1800487 None:intergenic 45.0%
! GGACTGGTGTAGTTTATGAG+AGG + chr8_1:1800473-1800492 Msa1171880:CDS 45.0%
GAAACAGATCTTGTTGGGAG+AGG + chr8_1:1800556-1800575 Msa1171880:CDS 45.0%
GCGAAGAAGTTTCACTTCGA+TGG + chr8_1:1800710-1800729 Msa1171880:CDS 45.0%
CTATCAGAATCGAGTGACTC+AGG + chr8_1:1800891-1800910 Msa1171880:CDS 45.0%
AGCTATCAAGCCTCCATCTA+TGG + chr8_1:1800978-1800997 Msa1171880:CDS 45.0%
GCCTCCATCTATGGATTTCA+TGG + chr8_1:1800987-1801006 Msa1171880:CDS 45.0%
!! CAGTGTGGTAAGCCATTTTG+AGG + chr8_1:1801054-1801073 Msa1171880:three_prime_UTR 45.0%
TTTATTGCGTGCTCCTTCCT+TGG + chr8_1:1801137-1801156 Msa1171880:three_prime_UTR 45.0%
!! ATATATTTGATAAAAATTAA+CGG + chr8_1:1796668-1796687 Msa1171880:intron 5.0%
!!! TTATGTATATTAATTATTTT+AGG - chr8_1:1798780-1798799 None:intergenic 5.0%
!!! AAATTTTCATTTTTTTTATT+AGG + chr8_1:1799950-1799969 Msa1171880:intron 5.0%
!!! AATTTTCATTTTTTTTATTA+GGG + chr8_1:1799951-1799970 Msa1171880:intron 5.0%
CAAGTACCTTTCTTGGCGCT+CGG - chr8_1:1795741-1795760 None:intergenic 50.0%
TTGCAAATCACCCTCCGAAG+AGG + chr8_1:1795758-1795777 Msa1171880:five_prime_UTR 50.0%
AGTTGAACCCACGACATTGC+AGG + chr8_1:1795800-1795819 Msa1171880:five_prime_UTR 50.0%
TGACTCACCTGCAATGTCGT+GGG - chr8_1:1795810-1795829 None:intergenic 50.0%
TTGACTCACCTGCAATGTCG+TGG - chr8_1:1795811-1795830 None:intergenic 50.0%
GAAGTTCAGGGTTCAAACGC+TGG + chr8_1:1795998-1796017 Msa1171880:five_prime_UTR 50.0%
ATCGCATACCTGACCTAACC+AGG + chr8_1:1796273-1796292 Msa1171880:intron 50.0%
GGAAATCCCGCTTTCATTGC+GGG + chr8_1:1796358-1796377 Msa1171880:intron 50.0%
GAAGCTCTCACCTTACAACC+CGG + chr8_1:1796508-1796527 Msa1171880:intron 50.0%
AAATACCCCGAGAGAAGAGG+AGG + chr8_1:1797135-1797154 Msa1171880:intron 50.0%
AATACCCCGAGAGAAGAGGA+GGG + chr8_1:1797136-1797155 Msa1171880:intron 50.0%
TAAACCCTCCTCTTCTCTCG+GGG - chr8_1:1797143-1797162 None:intergenic 50.0%
TAGTTGCCAGCTAGAGGTCT+TGG + chr8_1:1797421-1797440 Msa1171880:five_prime_UTR 50.0%
GATTGACCAAGACCTCTAGC+TGG - chr8_1:1797430-1797449 None:intergenic 50.0%
CAGCCTCCTTTATACTCCTC+AGG - chr8_1:1798482-1798501 None:intergenic 50.0%
! CTGAGGAGTATAAAGGAGGC+TGG + chr8_1:1798480-1798499 Msa1171880:CDS 50.0%
CTGTGGGCACAACCTTGAAA+TGG + chr8_1:1799093-1799112 Msa1171880:intron 50.0%
GGCACAACCTTGAAATGGAC+TGG + chr8_1:1799098-1799117 Msa1171880:intron 50.0%
GGTGCAGCCTTAAAACGGAT+AGG + chr8_1:1799159-1799178 Msa1171880:intron 50.0%
GAGACTCATGCTGTTGTTGC+TGG + chr8_1:1799627-1799646 Msa1171880:intron 50.0%
! GTTGTTGCTGGCTGAGTTTG+AGG + chr8_1:1799639-1799658 Msa1171880:intron 50.0%
ACCTCTTGTGATGGCTGTCA+CGG + chr8_1:1799681-1799700 Msa1171880:intron 50.0%
!! GGCGTTGACCTGGTCAAAAT+TGG + chr8_1:1799885-1799904 Msa1171880:intron 50.0%
TGTAGGTCGTCGTTTCCAAG+CGG + chr8_1:1800438-1800457 Msa1171880:CDS 50.0%
GAGAGGGACTCCAAATGGTT+AGG + chr8_1:1800490-1800509 Msa1171880:CDS 50.0%
GACTGTTGACAGCGACTATG+AGG + chr8_1:1800915-1800934 Msa1171880:CDS 50.0%
!! CATTTGGTGATGGTTTCGGG+AGG + chr8_1:1800953-1800972 Msa1171880:CDS 50.0%
AGCATGTGGACCTCTTCGGA+GGG - chr8_1:1795771-1795790 None:intergenic 55.0%
TGCCAGCATGTGGACCTCTT+CGG - chr8_1:1795775-1795794 None:intergenic 55.0%
AGAGGTCCACATGCTGGCAA+TGG + chr8_1:1795776-1795795 Msa1171880:five_prime_UTR 55.0%
GAGGTCCACATGCTGGCAAT+GGG + chr8_1:1795777-1795796 Msa1171880:five_prime_UTR 55.0%
CAACTCCCATTGCCAGCATG+TGG - chr8_1:1795785-1795804 None:intergenic 55.0%
GGCCGCCTAATTGCGACATT+TGG + chr8_1:1796379-1796398 Msa1171880:intron 55.0%
! CGATTCGGGCTTTATCGGAC+CGG + chr8_1:1796970-1796989 Msa1171880:five_prime_UTR 55.0%
! GGGTTGTTAATTGGTGGGCC+AGG - chr8_1:1797007-1797026 None:intergenic 55.0%
TGACTGACACCGAGCATCAC+CGG - chr8_1:1797882-1797901 None:intergenic 55.0%
CTGCGGGTGCAGCCTTAAAA+CGG + chr8_1:1799154-1799173 Msa1171880:intron 55.0%
! GCACGGCCCTATCCGTTTTA+AGG - chr8_1:1799169-1799188 None:intergenic 55.0%
CATTTGGCCGCCGTTGAATG+TGG + chr8_1:1799525-1799544 Msa1171880:intron 55.0%
GCTAGCACCGCCACATTCAA+CGG - chr8_1:1799538-1799557 None:intergenic 55.0%
! GTTGAATGTGGCGGTGCTAG+CGG + chr8_1:1799537-1799556 Msa1171880:intron 55.0%
ACCGTGACAGCCATCACAAG+AGG - chr8_1:1799685-1799704 None:intergenic 55.0%
TCTTGTGATGGCTGTCACGG+TGG + chr8_1:1799684-1799703 Msa1171880:intron 55.0%
! ACAGACGTGGCATGCCACTT+AGG + chr8_1:1799864-1799883 Msa1171880:intron 55.0%
!! ATGCCACTTAGGCGTTGACC+TGG + chr8_1:1799875-1799894 Msa1171880:intron 55.0%
TGACCAGGTCAACGCCTAAG+TGG - chr8_1:1799881-1799900 None:intergenic 55.0%
TCTGCAGAAACGACGGCATC+TGG - chr8_1:1800370-1800389 None:intergenic 55.0%
CTTGTTGGGAGAGGAAGACG+AGG + chr8_1:1800565-1800584 Msa1171880:CDS 55.0%
ATTGCGTGCTCCTTCCTTGG+AGG + chr8_1:1801140-1801159 Msa1171880:three_prime_UTR 55.0%
CAGCATGTGGACCTCTTCGG+AGG - chr8_1:1795772-1795791 None:intergenic 60.0%
CTCCGAAGAGGTCCACATGC+TGG + chr8_1:1795770-1795789 Msa1171880:five_prime_UTR 60.0%
TAGGCGGCCCGCAATGAAAG+CGG - chr8_1:1796368-1796387 None:intergenic 60.0%
GGACCGGACTAAAATGGGCC+TGG + chr8_1:1796986-1797005 Msa1171880:five_prime_UTR 60.0%
!! GGGCCAGGCCCATTTTAGTC+CGG - chr8_1:1796992-1797011 None:intergenic 60.0%
AGGCAATGTGAGGCCTGAGC+CGG + chr8_1:1797860-1797879 Msa1171880:CDS 60.0%
GGGCGACCCAGTCCATTTCA+AGG - chr8_1:1799108-1799127 None:intergenic 60.0%
ACGGATAGGGCCGTGCATAC+TGG + chr8_1:1799173-1799192 Msa1171880:intron 60.0%
TTGGCCGCCGTTGAATGTGG+CGG + chr8_1:1799528-1799547 Msa1171880:intron 60.0%
AGCACCGCCACATTCAACGG+CGG - chr8_1:1799535-1799554 None:intergenic 60.0%
TCCAAGCGGAAGTCCCGCAA+TGG + chr8_1:1800452-1800471 Msa1171880:CDS 60.0%
TCCATTGCGGGACTTCCGCT+TGG - chr8_1:1800456-1800475 None:intergenic 60.0%
TTGAGCTTCGGGGGCTCACC+AGG + chr8_1:1795692-1795711 Msa1171880:intron 65.0%
TGAGCTTCGGGGGCTCACCA+GGG + chr8_1:1795693-1795712 Msa1171880:intron 65.0%
AGGCGGCCCGCAATGAAAGC+GGG - chr8_1:1796367-1796386 None:intergenic 65.0%
AGGCCTGAGCCGGTGATGCT+CGG + chr8_1:1797870-1797889 Msa1171880:CDS 65.0%
!! ACACCGAGCATCACCGGCTC+AGG - chr8_1:1797876-1797895 None:intergenic 65.0%
! GAATGTGGCGGTGCTAGCGG+CGG + chr8_1:1799540-1799559 Msa1171880:intron 65.0%
GCGGAAGTCCCGCAATGGAC+TGG + chr8_1:1800457-1800476 Msa1171880:CDS 65.0%
GTTGGCAGCGCCTCCAAGGA+AGG - chr8_1:1801153-1801172 None:intergenic 65.0%
TTCGGGGGCTCACCAGGGTC+AGG + chr8_1:1795698-1795717 Msa1171880:intron 70.0%
TCGGGGGCTCACCAGGGTCA+GGG + chr8_1:1795699-1795718 Msa1171880:intron 70.0%
CTTGAGGCCTGCCCTGACCC+TGG - chr8_1:1795713-1795732 None:intergenic 70.0%
CAGGGTCAGGGCAGGCCTCA+AGG + chr8_1:1795711-1795730 Msa1171880:intron 70.0%
TTGGCGCTCGGCGAGCCTTG+AGG - chr8_1:1795729-1795748 None:intergenic 70.0%
GGCTCGCCGAGCGCCAAGAA+AGG + chr8_1:1795732-1795751 Msa1171880:five_prime_UTR 70.0%
! GCGGTGCTAGCGGCGGTGTA+AGG + chr8_1:1799547-1799566 Msa1171880:intron 70.0%
GGGCTCACCAGGGTCAGGGC+AGG + chr8_1:1795703-1795722 Msa1171880:intron 75.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 1795305 1801175 1795305 ID=Msa1171880;Name=Msa1171880
chr8_1 mRNA 1795305 1801175 1795305 ID=Msa1171880-mRNA-1;Parent=Msa1171880;Name=Msa1171880-mRNA-1;_AED=0.37;_eAED=0.37;_QI=888|1|1|1|0|0.16|6|128|533
chr8_1 exon 1795305 1795328 1795305 ID=Msa1171880-mRNA-1:exon:672;Parent=Msa1171880-mRNA-1
chr8_1 exon 1795714 1795821 1795714 ID=Msa1171880-mRNA-1:exon:673;Parent=Msa1171880-mRNA-1
chr8_1 exon 1795900 1796043 1795900 ID=Msa1171880-mRNA-1:exon:674;Parent=Msa1171880-mRNA-1
chr8_1 exon 1796953 1797128 1796953 ID=Msa1171880-mRNA-1:exon:675;Parent=Msa1171880-mRNA-1
chr8_1 exon 1797263 1798586 1797263 ID=Msa1171880-mRNA-1:exon:676;Parent=Msa1171880-mRNA-1
chr8_1 exon 1800334 1801175 1800334 ID=Msa1171880-mRNA-1:exon:677;Parent=Msa1171880-mRNA-1
chr8_1 five_prime_UTR 1795305 1795328 1795305 ID=Msa1171880-mRNA-1:five_prime_utr;Parent=Msa1171880-mRNA-1
chr8_1 five_prime_UTR 1795714 1795821 1795714 ID=Msa1171880-mRNA-1:five_prime_utr;Parent=Msa1171880-mRNA-1
chr8_1 five_prime_UTR 1795900 1796043 1795900 ID=Msa1171880-mRNA-1:five_prime_utr;Parent=Msa1171880-mRNA-1
chr8_1 five_prime_UTR 1796953 1797128 1796953 ID=Msa1171880-mRNA-1:five_prime_utr;Parent=Msa1171880-mRNA-1
chr8_1 five_prime_UTR 1797263 1797698 1797263 ID=Msa1171880-mRNA-1:five_prime_utr;Parent=Msa1171880-mRNA-1
chr8_1 CDS 1797699 1798586 1797699 ID=Msa1171880-mRNA-1:cds;Parent=Msa1171880-mRNA-1
chr8_1 CDS 1800334 1801047 1800334 ID=Msa1171880-mRNA-1:cds;Parent=Msa1171880-mRNA-1
chr8_1 three_prime_UTR 1801048 1801175 1801048 ID=Msa1171880-mRNA-1:three_prime_utr;Parent=Msa1171880-mRNA-1
Gene Sequence

>Msa1171880

ATGGCAAACGGGTCTTCCCTTGATCGCCTTGAAACTAAAACTTTTACTAAATTTCATGCAAATGGCGATTGTCTTGTCGAGGATCCTGTTGATAGTGCTGATCCTCAAAAATCTATGTTTTGTCAATTTTCTTCGGTTTACCAAGAGGAGAATTGTATTAGAGGCAATGTGAGGCCTGAGCCGGTGATGCTCGGTGTCAGTCAATTGCTTGATTTATACCAACTTTTCTCCCTTGTGAAGGAAAAAGGAGGGTATGCTGCAGTATCGAGAAAAGGGTTGTGGGACTCTGTGATAGTTGATCTGGGTTTGGACCTTAATGTTTTGGCTTCAGTGAAATTAGTTTATGAAAAATATCTGAGTGATTTCGAAGGTTGGCTCAGCAAAACGTTCGAAGAAAAGAGTTTCAAAAATTGGAATGGTGGGTGTTTGAATTCATTGCCAATAGATCTAGAAAAAGAGCTCCAAAGCCTCTCATTCTCAAATCTAAAGGACAAAGATGATCATTTTGTCACGTTAGAGCCATGTAACATAATTAAGCACATTGATTTGGTTAACCACAAGAGTGATGGTAATTTATTGGACACTAAAAACCAAAACAACAAATGTGAGGGTGTCCAAAATTTTAACGGTGATGGTAATGAGGATGACAATGAAAAATTCGGCACTGGTGTCAAGGATGATCTAGCCGCTTCTTTTGAATTTCATTCTCGCAAACGTAAAAGGGAATCATTATCGGAAATGATAAACTGGATGAAGAATATCGCAATACACCCATTTGATCCTGAGGAGTATAAAGGAGGCTGGGACTTTTTTGTTCAGATGCTGAAGGCAAGAGATGTTCTGTCGGTCAGAAAGCATGCAGAACCAAACAATGGGTCATCATCAAAGGTGAAGATGCATCCTTTGCATGATTCTGTCAAACCAGATGCCGTCGTTTCTGCAGATTTGATTAAGCCATCTTGGGATGATGATTCTCGTGAAAAGCTTGTTTCTGTAGGTCGTCGTTTCCAAGCGGAAGTCCCGCAATGGACTGGTGTAGTTTATGAGAGGGACTCCAAATGGTTAGGCACACAAGTATGGCCTGTTAAAAATCATTCAAAACCTACAACTGAAACAGATCTTGTTGGGAGAGGAAGACGAGGAAAGTGTAGCTGCAATGTTCAAGGTTCTGTTGACTGTGTCAGACTTCATATTGCTGCAAACAGGACCAAACTGAAGTTTGAATTGGGTTCTGCATTTTACCATTGGGGATTTGATAAAATGGGCGAAGAAGTTTCACTTCGATGGACAGCTGATGAAGAAAAGAGATTTAAGGATGCGATGGGGTTAAAAATCCCTTCCCAAAACAAGTCTTTTTGGAACAACCCATCCATATACTTTCAAAGGAAGACAAGAAAAGACATGGTGAGCTATTGCTTCAATGTATATCTTATTCAACTAAGAAGCTATCAGAATCGAGTGACTCAGGAGACTGTTGACAGCGACTATGAGGAAGTTGAGTTTGGATCATTTGGTGATGGTTTCGGGAGGAAAGCTATCAAGCCTCCATCTATGGATTTCATGGAGTGTTCAGAGAACACACAATGCTTTGATTTTGAGTAG
Protein sequence

>Msa1171880

MANGSSLDRLETKTFTKFHANGDCLVEDPVDSADPQKSMFCQFSSVYQEENCIRGNVRPEPVMLGVSQLLDLYQLFSLVKEKGGYAAVSRKGLWDSVIVDLGLDLNVLASVKLVYEKYLSDFEGWLSKTFEEKSFKNWNGGCLNSLPIDLEKELQSLSFSNLKDKDDHFVTLEPCNIIKHIDLVNHKSDGNLLDTKNQNNKCEGVQNFNGDGNEDDNEKFGTGVKDDLAASFEFHSRKRKRESLSEMINWMKNIAIHPFDPEEYKGGWDFFVQMLKARDVLSVRKHAEPNNGSSSKVKMHPLHDSVKPDAVVSADLIKPSWDDDSREKLVSVGRRFQAEVPQWTGVVYERDSKWLGTQVWPVKNHSKPTTETDLVGRGRRGKCSCNVQGSVDCVRLHIAANRTKLKFELGSAFYHWGFDKMGEEVSLRWTADEEKRFKDAMGLKIPSQNKSFWNNPSIYFQRKTRKDMVSYCFNVYLIQLRSYQNRVTQETVDSDYEEVEFGSFGDGFGRKAIKPPSMDFMECSENTQCFDFE*