Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450230 | sp|F4JT76|VPS54_ARATH | 50.888 | 169 | 83 | 0 | 11 | 179 | 467 | 635 | 2.98e-37 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450230 | A0A445IYK7 | 63.536 | 181 | 61 | 2 | 2 | 179 | 150 | 328 | 2.08e-65 | 219 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0286500 | Msa1450230 | 0.905788 | 2.964841e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450230 | MtrunA17_Chr2g0303321 | 68.047 | 169 | 54 | 0 | 11 | 179 | 447 | 615 | 2.49e-61 | 204 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450230 | AT4G19490.1 | 50.888 | 169 | 83 | 0 | 11 | 179 | 467 | 635 | 3.03e-38 | 139 |
| Msa1450230 | AT4G19490.2 | 50.888 | 169 | 83 | 0 | 11 | 179 | 467 | 635 | 3.03e-38 | 139 |
Find 44 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGGAGCTTTCTTTATTA+AGG | 0.147590 | tig0032843:+5942 | Msa1450230:intergenic |
| CATTAATATCCATGGCTTTA+AGG | 0.172628 | tig0032843:+6045 | Msa1450230:intergenic |
| CACTGTTGATATTCAATTCT+TGG | 0.241479 | tig0032843:-6152 | Msa1450230:three_prime_UTR |
| TCATTTCTTTGCGGTGAATA+TGG | 0.269801 | tig0032843:+8061 | Msa1450230:intergenic |
| GAGGACTTCATTGCAGTTAT+AGG | 0.306015 | tig0032843:-6823 | Msa1450230:CDS |
| CAAGGAGCTTTCTTTATTAA+GGG | 0.328733 | tig0032843:+5943 | Msa1450230:intergenic |
| TTTGTGATTGCAGGCACATT+TGG | 0.361631 | tig0032843:-8236 | Msa1450230:intron |
| TCTTAGGGAGACTATGTATT+GGG | 0.385098 | tig0032843:-8393 | None:intergenic |
| CTAACAGATTGGTGGAAGAT+TGG | 0.387747 | tig0032843:-6712 | Msa1450230:intron |
| TAACAGATTGGTGGAAGATT+GGG | 0.423692 | tig0032843:-6711 | Msa1450230:intron |
| ACCATGAACCTCGCTTTCTT+CGG | 0.436864 | tig0032843:+8096 | Msa1450230:intergenic |
| TTAAGGAAGAAGAGAATAAG+AGG | 0.444608 | tig0032843:+6062 | Msa1450230:intergenic |
| ACTAAACTGTGTGCTATTTG+AGG | 0.448369 | tig0032843:-5979 | Msa1450230:three_prime_UTR |
| CTAAACTGTGTGCTATTTGA+GGG | 0.456351 | tig0032843:-5978 | Msa1450230:three_prime_UTR |
| CCTATGGCATCATTTCTTTG+CGG | 0.468501 | tig0032843:+8052 | Msa1450230:intergenic |
| TCCGAAGAAAGCGAGGTTCA+TGG | 0.478169 | tig0032843:-8097 | Msa1450230:CDS |
| TTCTTAGGGAGACTATGTAT+TGG | 0.478379 | tig0032843:-8394 | None:intergenic |
| GTGATACTGCTCACAGAAGA+TGG | 0.485315 | tig0032843:-6924 | Msa1450230:CDS |
| GAGCATTGTGTAGCCGTGAT+TGG | 0.493080 | tig0032843:-6201 | Msa1450230:three_prime_UTR |
| TCTCTTCTTCCTTAAAGCCA+TGG | 0.499362 | tig0032843:-6054 | Msa1450230:three_prime_UTR |
| GTTGCTGCAGCAATTGCTTG+TGG | 0.512434 | tig0032843:-8139 | Msa1450230:CDS |
| TATTGATGCATTAATATCCA+TGG | 0.518049 | tig0032843:+6037 | Msa1450230:intergenic |
| TCACCTTGTATATCTACTAA+AGG | 0.518412 | tig0032843:+6236 | Msa1450230:intergenic |
| ATTGCAGGCACATTTGGTGC+GGG | 0.520540 | tig0032843:-8230 | Msa1450230:intron |
| AGCATATGTATTCTGTGTCA+AGG | 0.527620 | tig0032843:-8355 | Msa1450230:CDS |
| GAAGATGGGCAAAGCTTCTG+AGG | 0.536203 | tig0032843:-6909 | Msa1450230:CDS |
| TCCCTGAAAAGAGAGACCTA+TGG | 0.541882 | tig0032843:+8036 | Msa1450230:intergenic |
| GTTGCTCAAAATCCCCTCAA+TGG | 0.551742 | tig0032843:+8189 | Msa1450230:intergenic |
| AGATTGGGATACAGCATCGA+TGG | 0.561671 | tig0032843:-6696 | Msa1450230:CDS |
| AGGCCTTTAGTAGATATACA+AGG | 0.564998 | tig0032843:-6239 | Msa1450230:CDS |
| TTCTGCAAAATGACCAATCA+CGG | 0.571019 | tig0032843:+6188 | Msa1450230:intergenic |
| GCATATGTATTCTGTGTCAA+GGG | 0.580748 | tig0032843:-8354 | Msa1450230:intron |
| CATTCAAACTAACAGATTGG+TGG | 0.591860 | tig0032843:-6720 | Msa1450230:intron |
| TGATACTGCTCACAGAAGAT+GGG | 0.598497 | tig0032843:-6923 | Msa1450230:CDS |
| CCGCAAAGAAATGATGCCAT+AGG | 0.600791 | tig0032843:-8052 | Msa1450230:CDS |
| TGCTATTTGAGGGCATACAT+CGG | 0.602602 | tig0032843:-5968 | Msa1450230:three_prime_UTR |
| GATTGGGATACAGCATCGAT+GGG | 0.628768 | tig0032843:-6695 | Msa1450230:CDS |
| GATTGCAGGCACATTTGGTG+CGG | 0.637237 | tig0032843:-8231 | Msa1450230:intron |
| GCAAAGCTTCTGAGGGATCG+TGG | 0.638563 | tig0032843:-6901 | Msa1450230:CDS |
| AAGATGGGCAAAGCTTCTGA+GGG | 0.648096 | tig0032843:-6908 | Msa1450230:CDS |
| AGAAACATCCGAAGAAAGCG+AGG | 0.659844 | tig0032843:-8104 | Msa1450230:CDS |
| TCAATGTATAGAAATTGCAG+AGG | 0.694273 | tig0032843:+6856 | Msa1450230:intergenic |
| GACAGTGCAGTCATACACCA+AGG | 0.719412 | tig0032843:-6673 | Msa1450230:intron |
| ATACATTGACAGCATCAACG+AGG | 0.785944 | tig0032843:-6842 | Msa1450230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTCTATTGTAATTTGA+CGG | - | tig0032843:6475-6494 | Msa1450230:intron | 15.0% |
| !! | ACAACTAAATATAAAAGTAA+TGG | + | tig0032843:7294-7313 | Msa1450230:intergenic | 15.0% |
| !!! | ATTCAACAAATATTTTTTTG+AGG | + | tig0032843:7691-7710 | Msa1450230:intergenic | 15.0% |
| !! | ATGTTAATTTCATTTGTATT+TGG | - | tig0032843:7787-7806 | Msa1450230:intron | 15.0% |
| !! | TTGATTCTTTCTTTATTGAA+CGG | - | tig0032843:6550-6569 | Msa1450230:intron | 20.0% |
| !! | AACCTACTTTATAAAATGAT+AGG | + | tig0032843:6792-6811 | Msa1450230:intergenic | 20.0% |
| !! | CCTAAAAATAATATGGATAA+CGG | - | tig0032843:7171-7190 | Msa1450230:intron | 20.0% |
| !! | AATTATACAAGTATATCTAG+TGG | + | tig0032843:7220-7239 | Msa1450230:intergenic | 20.0% |
| !! | ACTAGATATACTTGTATAAT+TGG | - | tig0032843:7219-7238 | Msa1450230:intron | 20.0% |
| !! | ATACTTGTATAATTGGTAAA+TGG | - | tig0032843:7226-7245 | Msa1450230:intron | 20.0% |
| !!! | GTATGTACATATTTTCATTT+TGG | - | tig0032843:7530-7549 | Msa1450230:intron | 20.0% |
| !!! | AAAACAATGTTGTTTATTGA+AGG | - | tig0032843:7853-7872 | Msa1450230:intron | 20.0% |
| !! | AATTTAGTATTAGAAAGCTA+AGG | + | tig0032843:8045-8064 | Msa1450230:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTGTGATTGC+AGG | - | tig0032843:6081-6100 | Msa1450230:three_prime_UTR | 25.0% |
| !!! | GAATTTTTTTGACTTGTTAG+AGG | + | tig0032843:6338-6357 | Msa1450230:intergenic | 25.0% |
| ! | CTAACAAGTCAAAAAAATTC+AGG | - | tig0032843:6338-6357 | Msa1450230:intron | 25.0% |
| !!! | GATTGAACTTTTGAGTTAAT+TGG | + | tig0032843:6666-6685 | Msa1450230:intergenic | 25.0% |
| !! | GTCCTATCATTTTATAAAGT+AGG | - | tig0032843:6787-6806 | Msa1450230:intron | 25.0% |
| ! | AGTAGGTTTAAAAAACGAAA+TGG | - | tig0032843:6804-6823 | Msa1450230:intron | 25.0% |
| ! | GTAGGTTTAAAAAACGAAAT+GGG | - | tig0032843:6805-6824 | Msa1450230:intron | 25.0% |
| ! | TATAGAATATAGATGGCTTA+CGG | + | tig0032843:6908-6927 | Msa1450230:intergenic | 25.0% |
| ! | GATAAGATAAAACATTTGAG+AGG | + | tig0032843:7039-7058 | Msa1450230:intergenic | 25.0% |
| !! | ATGTAGTGTATTTCTTTTAC+TGG | - | tig0032843:7112-7131 | Msa1450230:intron | 25.0% |
| !!! | CCGTTATCCATATTATTTTT+AGG | + | tig0032843:7174-7193 | Msa1450230:intergenic | 25.0% |
| ! | TTGAGAACATCAAACAAATA+GGG | + | tig0032843:7319-7338 | Msa1450230:intergenic | 25.0% |
| ! | TTTGAGAACATCAAACAAAT+AGG | + | tig0032843:7320-7339 | Msa1450230:intergenic | 25.0% |
| ! | TTTGATGTTCTCAAAAAATC+TGG | - | tig0032843:7325-7344 | Msa1450230:intron | 25.0% |
| ! | TGAGGAAATATTAATAACCT+TGG | + | tig0032843:7673-7692 | Msa1450230:intergenic | 25.0% |
| ! | GTATGCTATCATTAACTAAT+TGG | + | tig0032843:8012-8031 | Msa1450230:intergenic | 25.0% |
| !!! | AATTCTAATTCTGCTTTTTC+AGG | - | tig0032843:8067-8086 | Msa1450230:CDS | 25.0% |
| ! | TATTGATGCATTAATATCCA+TGG | + | tig0032843:8292-8311 | Msa1450230:intergenic | 25.0% |
| ACAACTAAACTTCAGTAACA+TGG | + | tig0032843:6004-6023 | Msa1450230:intergenic | 30.0% | |
| ATCAAACAGTTCAAACTTAG+AGG | + | tig0032843:6535-6554 | Msa1450230:intergenic | 30.0% | |
| GAATGAAAACTTTCCCTTTA+TGG | - | tig0032843:6591-6610 | Msa1450230:intron | 30.0% | |
| ACCAATATGGATTCCATAAA+GGG | + | tig0032843:6607-6626 | Msa1450230:intergenic | 30.0% | |
| TACCAATATGGATTCCATAA+AGG | + | tig0032843:6608-6627 | Msa1450230:intergenic | 30.0% | |
| TTTATGGAATCCATATTGGT+AGG | - | tig0032843:6607-6626 | Msa1450230:intron | 30.0% | |
| ACTCAAAAGTTCAATCTGAT+AGG | - | tig0032843:6670-6689 | Msa1450230:intron | 30.0% | |
| ! | ACACATGAAAGGTTTTTGTT+AGG | - | tig0032843:6712-6731 | Msa1450230:intron | 30.0% |
| CCATCTATATTCTATAGCTT+GGG | - | tig0032843:6912-6931 | Msa1450230:CDS | 30.0% | |
| !! | TACTGATTCAACGTTAGTTT+AGG | + | tig0032843:7006-7025 | Msa1450230:intergenic | 30.0% |
| AAACTAACGTTGAATCAGTA+TGG | - | tig0032843:7006-7025 | Msa1450230:intron | 30.0% | |
| !!! | TAGTCATTTTTCCGTTTTAG+AGG | - | tig0032843:7078-7097 | Msa1450230:intron | 30.0% |
| CTGCTCTCCTAAAAATAATA+TGG | - | tig0032843:7164-7183 | Msa1450230:intron | 30.0% | |
| TCAATGTATAGAAATTGCAG+AGG | + | tig0032843:7473-7492 | Msa1450230:intergenic | 30.0% | |
| ! | CAATCTGTTAGTTTGAATGT+GGG | + | tig0032843:7605-7624 | Msa1450230:intergenic | 30.0% |
| AATAAACGTGGAGGAAAATA+TGG | + | tig0032843:7751-7770 | Msa1450230:intergenic | 30.0% | |
| AACTGTCAAACTAATAAACG+TGG | + | tig0032843:7763-7782 | Msa1450230:intergenic | 30.0% | |
| TTGGTCAACTGACATATATT+CGG | - | tig0032843:7806-7825 | Msa1450230:intron | 30.0% | |
| TATCATTAACTAATTGGCCA+GGG | + | tig0032843:8006-8025 | Msa1450230:intergenic | 30.0% | |
| AGTTAATGATAGCATACACA+AGG | - | tig0032843:8015-8034 | Msa1450230:CDS | 30.0% | |
| TCACCTTGTATATCTACTAA+AGG | + | tig0032843:8093-8112 | Msa1450230:intergenic | 30.0% | |
| CACTGTTGATATTCAATTCT+TGG | - | tig0032843:8174-8193 | Msa1450230:CDS | 30.0% | |
| TTAAGGAAGAAGAGAATAAG+AGG | + | tig0032843:8267-8286 | Msa1450230:intergenic | 30.0% | |
| ! | CATTAATATCCATGGCTTTA+AGG | + | tig0032843:8284-8303 | Msa1450230:intergenic | 30.0% |
| AGCATATGTATTCTGTGTCA+AGG | - | tig0032843:5971-5990 | Msa1450230:three_prime_UTR | 35.0% | |
| GCATATGTATTCTGTGTCAA+GGG | - | tig0032843:5972-5991 | Msa1450230:three_prime_UTR | 35.0% | |
| ! | TTAGTTGTCCTGTTTTCCAA+TGG | - | tig0032843:6016-6035 | Msa1450230:three_prime_UTR | 35.0% |
| TGCTGTAAAAAAAGCCATTG+AGG | - | tig0032843:6123-6142 | Msa1450230:three_prime_UTR | 35.0% | |
| GCTGTAAAAAAAGCCATTGA+GGG | - | tig0032843:6124-6143 | Msa1450230:three_prime_UTR | 35.0% | |
| CTGTAAAAAAAGCCATTGAG+GGG | - | tig0032843:6125-6144 | Msa1450230:three_prime_UTR | 35.0% | |
| TCATTTCTTTGCGGTGAATA+TGG | + | tig0032843:6268-6287 | Msa1450230:intergenic | 35.0% | |
| TATACTGCATTAGCAAGTCT+GGG | + | tig0032843:6422-6441 | Msa1450230:intergenic | 35.0% | |
| TCCCTTTATGGAATCCATAT+TGG | - | tig0032843:6603-6622 | Msa1450230:intron | 35.0% | |
| GAAAAGAGTTCCTACCAATA+TGG | + | tig0032843:6620-6639 | Msa1450230:intergenic | 35.0% | |
| AAGTTCAATCTGATAGGTGA+AGG | - | tig0032843:6676-6695 | Msa1450230:CDS | 35.0% | |
| TTGTTAGGATCCAATATGAG+AGG | - | tig0032843:6727-6746 | Msa1450230:intron | 35.0% | |
| TGTTAGGATCCAATATGAGA+GGG | - | tig0032843:6728-6747 | Msa1450230:intron | 35.0% | |
| CTTAAAACACCCTCTCATAT+TGG | + | tig0032843:6740-6759 | Msa1450230:intergenic | 35.0% | |
| AAATGGGACAAAATTGTGAG+AGG | - | tig0032843:6821-6840 | Msa1450230:CDS | 35.0% | |
| GCCATCTATATTCTATAGCT+TGG | - | tig0032843:6911-6930 | Msa1450230:CDS | 35.0% | |
| CCCAAGCTATAGAATATAGA+TGG | + | tig0032843:6915-6934 | Msa1450230:intergenic | 35.0% | |
| ! | TTCAACGTTAGTTTAGGTGA+TGG | + | tig0032843:7000-7019 | Msa1450230:intergenic | 35.0% |
| ACGGAAAAATGACTACTGAA+TGG | + | tig0032843:7073-7092 | Msa1450230:intergenic | 35.0% | |
| ! | AAATCCTAGAGCCTCTAAAA+CGG | + | tig0032843:7092-7111 | Msa1450230:intergenic | 35.0% |
| CGGAAGTTAAGAACATGATT+TGG | - | tig0032843:7191-7210 | Msa1450230:intron | 35.0% | |
| GCAATACATCATCTCTGTTT+GGG | + | tig0032843:7352-7371 | Msa1450230:intergenic | 35.0% | |
| TGCAATACATCATCTCTGTT+TGG | + | tig0032843:7353-7372 | Msa1450230:intergenic | 35.0% | |
| TGAATGTGGGAATTCAATCA+GGG | + | tig0032843:7592-7611 | Msa1450230:intergenic | 35.0% | |
| TTGAATGTGGGAATTCAATC+AGG | + | tig0032843:7593-7612 | Msa1450230:intergenic | 35.0% | |
| ! | CCAATCTGTTAGTTTGAATG+TGG | + | tig0032843:7606-7625 | Msa1450230:intergenic | 35.0% |
| CCACATTCAAACTAACAGAT+TGG | - | tig0032843:7603-7622 | Msa1450230:intron | 35.0% | |
| CATTCAAACTAACAGATTGG+TGG | - | tig0032843:7606-7625 | Msa1450230:intron | 35.0% | |
| TAACAGATTGGTGGAAGATT+GGG | - | tig0032843:7615-7634 | Msa1450230:intron | 35.0% | |
| TGTCAAACTAATAAACGTGG+AGG | + | tig0032843:7760-7779 | Msa1450230:intergenic | 35.0% | |
| TGGTCAACTGACATATATTC+GGG | - | tig0032843:7807-7826 | Msa1450230:intron | 35.0% | |
| ! | AACCTACTGTATTTGCTAAC+TGG | + | tig0032843:7879-7898 | Msa1450230:intergenic | 35.0% |
| GTTAGCAAATACAGTAGGTT+AGG | - | tig0032843:7879-7898 | Msa1450230:intron | 35.0% | |
| ! | AAAATCCACGTTTTTCTGTC+AGG | + | tig0032843:7949-7968 | Msa1450230:intergenic | 35.0% |
| ATCATTAACTAATTGGCCAG+GGG | + | tig0032843:8005-8024 | Msa1450230:intergenic | 35.0% | |
| CTATCATTAACTAATTGGCC+AGG | + | tig0032843:8007-8026 | Msa1450230:intergenic | 35.0% | |
| AGGCCTTTAGTAGATATACA+AGG | - | tig0032843:8087-8106 | Msa1450230:CDS | 35.0% | |
| TTCTGCAAAATGACCAATCA+CGG | + | tig0032843:8141-8160 | Msa1450230:intergenic | 35.0% | |
| !! | ACTAAACTGTGTGCTATTTG+AGG | - | tig0032843:8347-8366 | Msa1450230:intron | 35.0% |
| !! | CTAAACTGTGTGCTATTTGA+GGG | - | tig0032843:8348-8367 | Msa1450230:intron | 35.0% |
| ! | TTGTCCTGTTTTCCAATGGT+TGG | - | tig0032843:6020-6039 | Msa1450230:three_prime_UTR | 40.0% |
| ! | TCTGATAAAGTGCCAACCAT+TGG | + | tig0032843:6035-6054 | Msa1450230:intergenic | 40.0% |
| TTTGTGATTGCAGGCACATT+TGG | - | tig0032843:6090-6109 | Msa1450230:three_prime_UTR | 40.0% | |
| ! | GGGATTTTGAGCAACTATGA+TGG | - | tig0032843:6145-6164 | Msa1450230:three_prime_UTR | 40.0% |
| CCTATGGCATCATTTCTTTG+CGG | + | tig0032843:6277-6296 | Msa1450230:intergenic | 40.0% | |
| CTATACTGCATTAGCAAGTC+TGG | + | tig0032843:6423-6442 | Msa1450230:intergenic | 40.0% | |
| ACAGTTCAAACTTAGAGGAG+AGG | + | tig0032843:6530-6549 | Msa1450230:intergenic | 40.0% | |
| ! | CACACAAAGGTACACATGAA+AGG | - | tig0032843:6701-6720 | Msa1450230:CDS | 40.0% |
| GCTTGGGTGTCTAATATATC+TGG | - | tig0032843:6928-6947 | Msa1450230:CDS | 40.0% | |
| !!! | TTTTCCGTTTTAGAGGCTCT+AGG | - | tig0032843:7085-7104 | Msa1450230:intron | 40.0% |
| TGATACTGCTCACAGAAGAT+GGG | - | tig0032843:7403-7422 | Msa1450230:intron | 40.0% | |
| ATACATTGACAGCATCAACG+AGG | - | tig0032843:7484-7503 | Msa1450230:intron | 40.0% | |
| GAGGACTTCATTGCAGTTAT+AGG | - | tig0032843:7503-7522 | Msa1450230:intron | 40.0% | |
| CTAACAGATTGGTGGAAGAT+TGG | - | tig0032843:7614-7633 | Msa1450230:intron | 40.0% | |
| CCATGCAACGGAAAAACAAT+CGG | + | tig0032843:7915-7934 | Msa1450230:intergenic | 40.0% | |
| GTCTCTTCTTATCCATGCAA+CGG | + | tig0032843:7927-7946 | Msa1450230:intergenic | 40.0% | |
| TCATTAACTAATTGGCCAGG+GGG | + | tig0032843:8004-8023 | Msa1450230:intergenic | 40.0% | |
| ! | TTTTGCAGAAGTTCTGTAGC+AGG | - | tig0032843:8151-8170 | Msa1450230:CDS | 40.0% |
| TCTCTTCTTCCTTAAAGCCA+TGG | - | tig0032843:8272-8291 | Msa1450230:intron | 40.0% | |
| ! | TGCTATTTGAGGGCATACAT+CGG | - | tig0032843:8358-8377 | Msa1450230:CDS | 40.0% |
| AGTGCCAACCATTGGAAAAC+AGG | + | tig0032843:6027-6046 | Msa1450230:intergenic | 45.0% | |
| GTTGCTCAAAATCCCCTCAA+TGG | + | tig0032843:6140-6159 | Msa1450230:intergenic | 45.0% | |
| AGAAACATCCGAAGAAAGCG+AGG | - | tig0032843:6222-6241 | Msa1450230:exon | 45.0% | |
| ACCATGAACCTCGCTTTCTT+CGG | + | tig0032843:6233-6252 | Msa1450230:intergenic | 45.0% | |
| CCGCAAAGAAATGATGCCAT+AGG | - | tig0032843:6274-6293 | Msa1450230:intron | 45.0% | |
| ! | TGCCATAGGTCTCTCTTTTC+AGG | - | tig0032843:6288-6307 | Msa1450230:intron | 45.0% |
| ! | GCCATAGGTCTCTCTTTTCA+GGG | - | tig0032843:6289-6308 | Msa1450230:intron | 45.0% |
| TCCCTGAAAAGAGAGACCTA+TGG | + | tig0032843:6293-6312 | Msa1450230:intergenic | 45.0% | |
| !!! | ATTGGCTTTTGACAGTGTCG+TGG | + | tig0032843:6648-6667 | Msa1450230:intergenic | 45.0% |
| ! | ATAGGTGAAGGCACACACAA+AGG | - | tig0032843:6688-6707 | Msa1450230:CDS | 45.0% |
| GTGATACTGCTCACAGAAGA+TGG | - | tig0032843:7402-7421 | Msa1450230:intron | 45.0% | |
| AAGATGGGCAAAGCTTCTGA+GGG | - | tig0032843:7418-7437 | Msa1450230:intron | 45.0% | |
| ! | AGATTGGGATACAGCATCGA+TGG | - | tig0032843:7630-7649 | Msa1450230:intron | 45.0% |
| !! | GATTGGGATACAGCATCGAT+GGG | - | tig0032843:7631-7650 | Msa1450230:intron | 45.0% |
| ATTCGGGCAAGAGTTTGATC+TGG | - | tig0032843:7823-7842 | Msa1450230:intron | 45.0% | |
| GGCCAGTTAGCAAATACAGT+AGG | - | tig0032843:7874-7893 | Msa1450230:intron | 45.0% | |
| !! | CCGATTGTTTTTCCGTTGCA+TGG | - | tig0032843:7912-7931 | Msa1450230:intron | 45.0% |
| AGAGACCTGACAGAAAAACG+TGG | - | tig0032843:7941-7960 | Msa1450230:intron | 45.0% | |
| ! | AGATTTCTGATTTTCCCCCC+TGG | - | tig0032843:7986-8005 | Msa1450230:intron | 45.0% |
| CATTAACTAATTGGCCAGGG+GGG | + | tig0032843:8003-8022 | Msa1450230:intergenic | 45.0% | |
| ! | GATTGCAGGCACATTTGGTG+CGG | - | tig0032843:6095-6114 | Msa1450230:three_prime_UTR | 50.0% |
| !! | ATTGCAGGCACATTTGGTGC+GGG | - | tig0032843:6096-6115 | Msa1450230:three_prime_UTR | 50.0% |
| GTTGCTGCAGCAATTGCTTG+TGG | - | tig0032843:6187-6206 | Msa1450230:three_prime_UTR | 50.0% | |
| TCCGAAGAAAGCGAGGTTCA+TGG | - | tig0032843:6229-6248 | Msa1450230:exon | 50.0% | |
| GAAGATGGGCAAAGCTTCTG+AGG | - | tig0032843:7417-7436 | Msa1450230:intron | 50.0% | |
| GACAGTGCAGTCATACACCA+AGG | - | tig0032843:7653-7672 | Msa1450230:intron | 50.0% | |
| ! | GAGCATTGTGTAGCCGTGAT+TGG | - | tig0032843:8125-8144 | Msa1450230:CDS | 50.0% |
| ! | GCAAAGCTTCTGAGGGATCG+TGG | - | tig0032843:7425-7444 | Msa1450230:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0032843 | gene | 5946 | 8402 | 5946 | ID=Msa1450230;Name=Msa1450230 |
| tig0032843 | mRNA | 5946 | 8402 | 5946 | ID=Msa1450230-mRNA-1;Parent=Msa1450230;Name=Msa1450230-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0.75|0.8|1|1|1|5|290|184 |
| tig0032843 | exon | 5946 | 6259 | 5946 | ID=Msa1450230-mRNA-1:exon:17369;Parent=Msa1450230-mRNA-1 |
| tig0032843 | exon | 6674 | 6727 | 6674 | ID=Msa1450230-mRNA-1:exon:17368;Parent=Msa1450230-mRNA-1 |
| tig0032843 | exon | 6819 | 6990 | 6819 | ID=Msa1450230-mRNA-1:exon:17367;Parent=Msa1450230-mRNA-1 |
| tig0032843 | exon | 7989 | 8245 | 7989 | ID=Msa1450230-mRNA-1:exon:17366;Parent=Msa1450230-mRNA-1 |
| tig0032843 | exon | 8355 | 8402 | 8355 | ID=Msa1450230-mRNA-1:exon:17365;Parent=Msa1450230-mRNA-1 |
| tig0032843 | CDS | 8355 | 8402 | 8355 | ID=Msa1450230-mRNA-1:cds;Parent=Msa1450230-mRNA-1 |
| tig0032843 | CDS | 7989 | 8245 | 7989 | ID=Msa1450230-mRNA-1:cds;Parent=Msa1450230-mRNA-1 |
| tig0032843 | CDS | 6819 | 6990 | 6819 | ID=Msa1450230-mRNA-1:cds;Parent=Msa1450230-mRNA-1 |
| tig0032843 | CDS | 6674 | 6727 | 6674 | ID=Msa1450230-mRNA-1:cds;Parent=Msa1450230-mRNA-1 |
| tig0032843 | CDS | 6236 | 6259 | 6236 | ID=Msa1450230-mRNA-1:cds;Parent=Msa1450230-mRNA-1 |
| tig0032843 | three_prime_UTR | 5946 | 6235 | 5946 | ID=Msa1450230-mRNA-1:three_prime_utr;Parent=Msa1450230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
