Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0286500 | RZB91195.1 | 63.587 | 184 | 59 | 4 | 2 | 182 | 150 | 328 | 1.79e-63 | 215 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0286500 | sp|F4JT76|VPS54_ARATH | 51.163 | 172 | 81 | 2 | 11 | 182 | 467 | 635 | 5.72e-36 | 135 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0286500 | A0A445IYK7 | 63.587 | 184 | 59 | 4 | 2 | 182 | 150 | 328 | 8.55e-64 | 215 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011170 | Msa0286500 | 0.805511 | 1.288832e-49 | -8.615850e-47 |
| Msa0074700 | Msa0286500 | 0.800355 | 1.498680e-48 | -8.615850e-47 |
| Msa0128020 | Msa0286500 | 0.800088 | 1.698321e-48 | -8.615850e-47 |
| Msa0205130 | Msa0286500 | 0.835169 | 1.962460e-56 | -8.615850e-47 |
| Msa0222890 | Msa0286500 | 0.807543 | 4.801360e-50 | -8.615850e-47 |
| Msa0260680 | Msa0286500 | 0.812889 | 3.378459e-51 | -8.615850e-47 |
| Msa0280090 | Msa0286500 | 0.822399 | 2.419108e-53 | -8.615850e-47 |
| Msa0286500 | Msa0493250 | 0.806405 | 8.359788e-50 | -8.615850e-47 |
| Msa0286500 | Msa0512900 | 0.801802 | 7.582807e-49 | -8.615850e-47 |
| Msa0286500 | Msa0569220 | 0.803273 | 3.771348e-49 | -8.615850e-47 |
| Msa0286500 | Msa0616160 | 0.810450 | 1.145659e-50 | -8.615850e-47 |
| Msa0286500 | Msa0649110 | 0.804948 | 1.690694e-49 | -8.615850e-47 |
| Msa0286500 | Msa0679710 | 0.807046 | 6.119645e-50 | -8.615850e-47 |
| Msa0286500 | Msa0796700 | 0.831270 | 1.835758e-55 | -8.615850e-47 |
| Msa0286500 | Msa0969520 | 0.802387 | 5.747373e-49 | -8.615850e-47 |
| Msa0286500 | Msa0976670 | 0.823278 | 1.509723e-53 | -8.615850e-47 |
| Msa0286500 | Msa0993290 | 0.809899 | 1.505989e-50 | -8.615850e-47 |
| Msa0286500 | Msa0993600 | 0.804940 | 1.697004e-49 | -8.615850e-47 |
| Msa0286500 | Msa1014540 | 0.800808 | 1.211471e-48 | -8.615850e-47 |
| Msa0286500 | Msa1048280 | -0.800564 | 1.358757e-48 | -8.615850e-47 |
| Msa0286500 | Msa1331000 | 0.801398 | 9.175441e-49 | -8.615850e-47 |
| Msa0286500 | Msa1359040 | 0.807042 | 6.131384e-50 | -8.615850e-47 |
| Msa0286500 | Msa1450230 | 0.905788 | 2.964841e-80 | -8.615850e-47 |
| Msa0286500 | Msa1466540 | 0.809777 | 1.600156e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0286500 | MtrunA17_Chr2g0303321 | 68.023 | 172 | 52 | 2 | 11 | 182 | 447 | 615 | 4.57e-60 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0286500 | AT4G19490.1 | 51.163 | 172 | 81 | 2 | 11 | 182 | 467 | 635 | 5.82e-37 | 135 |
| Msa0286500 | AT4G19490.2 | 51.163 | 172 | 81 | 2 | 11 | 182 | 467 | 635 | 5.82e-37 | 135 |
Find 44 sgRNAs with CRISPR-Local
Find 167 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGGAGCTTTCTTTATTA+AGG | 0.147590 | 2_3:+27708038 | None:intergenic |
| CATTAATATCCATGGCTTTA+AGG | 0.172628 | 2_3:+27708141 | None:intergenic |
| CACTGTTGATATTCAATTCT+TGG | 0.241479 | 2_3:-27708248 | Msa0286500:three_prime_UTR |
| TCATTTCTTTGCGGTGAATA+TGG | 0.269801 | 2_3:+27710498 | None:intergenic |
| GAGGACTTCATTGCAGTTAT+AGG | 0.306015 | 2_3:-27708918 | Msa0286500:CDS |
| CAAGGAGCTTTCTTTATTAA+GGG | 0.328733 | 2_3:+27708039 | None:intergenic |
| TTTGTGATTGCAGGCACATT+TGG | 0.361631 | 2_3:-27710673 | Msa0286500:intron |
| TCTTAGGGAGACTATGTATT+GGG | 0.385098 | 2_3:-27710830 | None:intergenic |
| CTAACAGATTGGTGGAAGAT+TGG | 0.387747 | 2_3:-27708807 | Msa0286500:intron |
| TAACAGATTGGTGGAAGATT+GGG | 0.423692 | 2_3:-27708806 | Msa0286500:intron |
| ACCATGAACCTCGCTTTCTT+CGG | 0.436864 | 2_3:+27710533 | None:intergenic |
| TTAAGGAAGAAGAGAATAAG+AGG | 0.444608 | 2_3:+27708158 | None:intergenic |
| ACTAAACTGTGTGCTATTTG+AGG | 0.448369 | 2_3:-27708075 | Msa0286500:three_prime_UTR |
| CTAAACTGTGTGCTATTTGA+GGG | 0.456351 | 2_3:-27708074 | Msa0286500:three_prime_UTR |
| CCTATGGCATCATTTCTTTG+CGG | 0.468501 | 2_3:+27710489 | None:intergenic |
| TCCGAAGAAAGCGAGGTTCA+TGG | 0.478169 | 2_3:-27710534 | Msa0286500:CDS |
| TTCTTAGGGAGACTATGTAT+TGG | 0.478379 | 2_3:-27710831 | None:intergenic |
| GTGATACTGCTCACAGAAGA+TGG | 0.485315 | 2_3:-27709028 | Msa0286500:CDS |
| GAGCATTGTGTAGCCGTGAT+TGG | 0.493080 | 2_3:-27708297 | Msa0286500:three_prime_UTR |
| TCTCTTCTTCCTTAAAGCCA+TGG | 0.499362 | 2_3:-27708150 | Msa0286500:three_prime_UTR |
| GTTGCTGCAGCAATTGCTTG+TGG | 0.512434 | 2_3:-27710576 | Msa0286500:CDS |
| TATTGATGCATTAATATCCA+TGG | 0.518049 | 2_3:+27708133 | None:intergenic |
| TCACCTTGTATATCTACTAA+AGG | 0.518412 | 2_3:+27708332 | None:intergenic |
| ATTGCAGGCACATTTGGTGC+GGG | 0.520540 | 2_3:-27710667 | Msa0286500:intron |
| AGCATATGTATTCTGTGTCA+AGG | 0.527620 | 2_3:-27710792 | Msa0286500:CDS |
| GAAGATGGGCAAAGCTTCTG+AGG | 0.536203 | 2_3:-27709013 | Msa0286500:CDS |
| TCCCTGAAAAGAGAGACCTA+TGG | 0.541882 | 2_3:+27710473 | None:intergenic |
| GTTGCTCAAAATCCCCTCAA+TGG | 0.551742 | 2_3:+27710626 | None:intergenic |
| AGATTGGGATACAGCATCGA+TGG | 0.561671 | 2_3:-27708791 | Msa0286500:CDS |
| AGGCCTTTAGTAGATATACA+AGG | 0.564998 | 2_3:-27708335 | Msa0286500:CDS |
| TTCTGCAAAATGACCAATCA+CGG | 0.571019 | 2_3:+27708284 | None:intergenic |
| GCATATGTATTCTGTGTCAA+GGG | 0.580748 | 2_3:-27710791 | Msa0286500:intron |
| CATTCAAACTAACAGATTGG+TGG | 0.591860 | 2_3:-27708815 | Msa0286500:intron |
| TGATACTGCTCACAGAAGAT+GGG | 0.598497 | 2_3:-27709027 | Msa0286500:CDS |
| CCGCAAAGAAATGATGCCAT+AGG | 0.600791 | 2_3:-27710489 | Msa0286500:CDS |
| TGCTATTTGAGGGCATACAT+CGG | 0.602602 | 2_3:-27708064 | Msa0286500:three_prime_UTR |
| GATTGGGATACAGCATCGAT+GGG | 0.628768 | 2_3:-27708790 | Msa0286500:CDS |
| GATTGCAGGCACATTTGGTG+CGG | 0.637237 | 2_3:-27710668 | Msa0286500:intron |
| GCAAAGCTTCTGAGGGATCG+TGG | 0.638563 | 2_3:-27709005 | Msa0286500:CDS |
| AAGATGGGCAAAGCTTCTGA+GGG | 0.648096 | 2_3:-27709012 | Msa0286500:CDS |
| AGAAACATCCGAAGAAAGCG+AGG | 0.659844 | 2_3:-27710541 | Msa0286500:CDS |
| AGAAATTGCAGAGATTGCAG+AGG | 0.663419 | 2_3:+27708960 | None:intergenic |
| GACAGTGCAGTCATACACCA+AGG | 0.719412 | 2_3:-27708768 | Msa0286500:intron |
| ATACATTGACAGCATCAACG+AGG | 0.785944 | 2_3:-27708937 | Msa0286500:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATTATTATGTAGTTAATT+AGG | - | chr2_3:27708859-27708878 | Msa0286500:intron | 10.0% |
| !!! | AAAAAATTCAGGTTAAATAT+TGG | - | chr2_3:27708445-27708464 | Msa0286500:intron | 15.0% |
| !! | ATAATTCTATTGTAATTTGA+CGG | - | chr2_3:27708586-27708605 | Msa0286500:intron | 15.0% |
| !! | TCTTATTATTTAATCCTAAT+GGG | + | chr2_3:27708909-27708928 | None:intergenic | 15.0% |
| !!! | TTCTCTTTATTTGTATATAA+AGG | - | chr2_3:27708956-27708975 | Msa0286500:CDS | 15.0% |
| !!! | TCTCTTTATTTGTATATAAA+GGG | - | chr2_3:27708957-27708976 | Msa0286500:CDS | 15.0% |
| !! | ACAACTAAATATAAAAGTAA+TGG | + | chr2_3:27709723-27709742 | None:intergenic | 15.0% |
| !!! | ATTCAACAAATATTTTTTTG+AGG | + | chr2_3:27710129-27710148 | None:intergenic | 15.0% |
| !! | ATGTTAATTTCATTTGTATT+TGG | - | chr2_3:27710225-27710244 | Msa0286500:intron | 15.0% |
| !! | TTGATTCTTTCTTTATTGAA+CGG | - | chr2_3:27708661-27708680 | Msa0286500:intron | 20.0% |
| !! | CTCTTATTATTTAATCCTAA+TGG | + | chr2_3:27708910-27708929 | None:intergenic | 20.0% |
| !! | CATTAGGATTAAATAATAAG+AGG | - | chr2_3:27708908-27708927 | Msa0286500:intron | 20.0% |
| !! | TAAATAATAAGAGGCTAATT+AGG | - | chr2_3:27708917-27708936 | Msa0286500:CDS | 20.0% |
| !! | AAATAATAAGAGGCTAATTA+GGG | - | chr2_3:27708918-27708937 | Msa0286500:CDS | 20.0% |
| !!! | CTCTTTATTTGTATATAAAG+GGG | - | chr2_3:27708958-27708977 | Msa0286500:CDS | 20.0% |
| !! | AGATGGTAATTACAAAAATA+GGG | + | chr2_3:27709113-27709132 | None:intergenic | 20.0% |
| !! | AACCTACTTTATAAAATGAT+AGG | + | chr2_3:27709221-27709240 | None:intergenic | 20.0% |
| !! | AATTATACAAGTATATCTAG+TGG | + | chr2_3:27709649-27709668 | None:intergenic | 20.0% |
| !! | ACTAGATATACTTGTATAAT+TGG | - | chr2_3:27709648-27709667 | Msa0286500:intron | 20.0% |
| !! | ATACTTGTATAATTGGTAAA+TGG | - | chr2_3:27709655-27709674 | Msa0286500:intron | 20.0% |
| !!! | GTATGTACATATTTTCATTT+TGG | - | chr2_3:27709968-27709987 | Msa0286500:intron | 20.0% |
| !!! | AAAACAATGTTGTTTATTGA+AGG | - | chr2_3:27710291-27710310 | Msa0286500:intron | 20.0% |
| !! | AATTTAGTATTAGAAAGCTA+AGG | + | chr2_3:27710482-27710501 | None:intergenic | 20.0% |
| !!! | TTTTTCTTTTTTGTGATTGC+AGG | - | chr2_3:27708177-27708196 | Msa0286500:three_prime_UTR | 25.0% |
| !!! | GAATTTTTTTGACTTGTTAG+AGG | + | chr2_3:27708434-27708453 | None:intergenic | 25.0% |
| ! | CTAACAAGTCAAAAAAATTC+AGG | - | chr2_3:27708434-27708453 | Msa0286500:intron | 25.0% |
| !!! | GATTGAACTTTTGAGTTAAT+TGG | + | chr2_3:27708777-27708796 | None:intergenic | 25.0% |
| ! | TTTGTATATAAAGGGGAATT+AGG | - | chr2_3:27708965-27708984 | Msa0286500:CDS | 25.0% |
| ! | TGAATGAAAATAGTAGTAGA+GGG | + | chr2_3:27709077-27709096 | None:intergenic | 25.0% |
| ! | ATGAATGAAAATAGTAGTAG+AGG | + | chr2_3:27709078-27709097 | None:intergenic | 25.0% |
| ! | CAGATGGTAATTACAAAAAT+AGG | + | chr2_3:27709114-27709133 | None:intergenic | 25.0% |
| !!! | GTTTTTAGTATAAAACTGAC+AGG | + | chr2_3:27709185-27709204 | None:intergenic | 25.0% |
| !! | GTCCTATCATTTTATAAAGT+AGG | - | chr2_3:27709216-27709235 | Msa0286500:intron | 25.0% |
| ! | AGTAGGTTTAAAAAACGAAA+TGG | - | chr2_3:27709233-27709252 | Msa0286500:intron | 25.0% |
| ! | GTAGGTTTAAAAAACGAAAT+GGG | - | chr2_3:27709234-27709253 | Msa0286500:intron | 25.0% |
| ! | TATAGAATATAGATGGCTTA+CGG | + | chr2_3:27709337-27709356 | None:intergenic | 25.0% |
| ! | GATAAGATAAAACATTTGAG+AGG | + | chr2_3:27709468-27709487 | None:intergenic | 25.0% |
| !! | ATGTAGTGTATTTCTTTTAC+TGG | - | chr2_3:27709541-27709560 | Msa0286500:intron | 25.0% |
| ! | CCTAAAGATAATATGGATAA+CGG | - | chr2_3:27709600-27709619 | Msa0286500:intron | 25.0% |
| ! | TTGAGAACATCAAACAAATA+GGG | + | chr2_3:27709748-27709767 | None:intergenic | 25.0% |
| ! | TTTGAGAACATCAAACAAAT+AGG | + | chr2_3:27709749-27709768 | None:intergenic | 25.0% |
| ! | TTTGATGTTCTCAAAAAATC+TGG | - | chr2_3:27709754-27709773 | Msa0286500:intron | 25.0% |
| ! | TGAGGAAATATTAATAACCT+TGG | + | chr2_3:27710111-27710130 | None:intergenic | 25.0% |
| ! | GTATGCTATCATTAACTAAT+TGG | + | chr2_3:27710449-27710468 | None:intergenic | 25.0% |
| !!! | AATTCTAATTCTGCTTTTTC+AGG | - | chr2_3:27710504-27710523 | Msa0286500:CDS | 25.0% |
| ! | TATTGATGCATTAATATCCA+TGG | + | chr2_3:27710729-27710748 | None:intergenic | 25.0% |
| ACAACTAAACTTCAGTAACA+TGG | + | chr2_3:27708100-27708119 | None:intergenic | 30.0% | |
| TATATTGCATTAGCAAGTCT+GGG | + | chr2_3:27708533-27708552 | None:intergenic | 30.0% | |
| TTATATTGCATTAGCAAGTC+TGG | + | chr2_3:27708534-27708553 | None:intergenic | 30.0% | |
| ATCAAACAGTTCAAACTTAG+AGG | + | chr2_3:27708646-27708665 | None:intergenic | 30.0% | |
| GAATGAAAACTTTCCCTTTA+TGG | - | chr2_3:27708702-27708721 | Msa0286500:intron | 30.0% | |
| ACCAATATGGATTCCATAAA+GGG | + | chr2_3:27708718-27708737 | None:intergenic | 30.0% | |
| TACCAATATGGATTCCATAA+AGG | + | chr2_3:27708719-27708738 | None:intergenic | 30.0% | |
| TTTATGGAATCCATATTGGT+AGG | - | chr2_3:27708718-27708737 | Msa0286500:intron | 30.0% | |
| ACTCAAAAGTTCAATCTGAT+AGG | - | chr2_3:27708781-27708800 | Msa0286500:CDS | 30.0% | |
| ! | ACACACAAAAGGTTTTTGTT+AGG | - | chr2_3:27708811-27708830 | Msa0286500:intron | 30.0% |
| TCAAGTAGATTATTAGTGAG+TGG | - | chr2_3:27708883-27708902 | Msa0286500:intron | 30.0% | |
| AAGAATGAAGATGAAACAGA+TGG | + | chr2_3:27709130-27709149 | None:intergenic | 30.0% | |
| TGTCATTGTGGTTCAATTAT+AGG | - | chr2_3:27709156-27709175 | Msa0286500:intron | 30.0% | |
| CCATCTATATTCTATAGCTT+GGG | - | chr2_3:27709341-27709360 | Msa0286500:intron | 30.0% | |
| !! | TACTGATTCAACGTTAGTTT+AGG | + | chr2_3:27709435-27709454 | None:intergenic | 30.0% |
| AAACTAACGTTGAATCAGTA+TGG | - | chr2_3:27709435-27709454 | Msa0286500:intron | 30.0% | |
| !!! | TAGTCATTTTTCCGTTTTAG+AGG | - | chr2_3:27709507-27709526 | Msa0286500:intron | 30.0% |
| CCGTTATCCATATTATCTTT+AGG | + | chr2_3:27709603-27709622 | None:intergenic | 30.0% | |
| ! | CAATCTGTTAGTTTGAATGT+GGG | + | chr2_3:27710043-27710062 | None:intergenic | 30.0% |
| AATAAACGTGGAGGAAAATA+TGG | + | chr2_3:27710189-27710208 | None:intergenic | 30.0% | |
| AACTGTCAAACTAATAAACG+TGG | + | chr2_3:27710201-27710220 | None:intergenic | 30.0% | |
| TTGGTCAACTGACATATATT+CGG | - | chr2_3:27710244-27710263 | Msa0286500:intron | 30.0% | |
| TATCATTAACTAATTGGCCA+GGG | + | chr2_3:27710443-27710462 | None:intergenic | 30.0% | |
| AGTTAATGATAGCATACACA+AGG | - | chr2_3:27710452-27710471 | Msa0286500:CDS | 30.0% | |
| TCACCTTGTATATCTACTAA+AGG | + | chr2_3:27710530-27710549 | None:intergenic | 30.0% | |
| CACTGTTGATATTCAATTCT+TGG | - | chr2_3:27710611-27710630 | Msa0286500:CDS | 30.0% | |
| TTAAGGAAGAAGAGAATAAG+AGG | + | chr2_3:27710704-27710723 | None:intergenic | 30.0% | |
| ! | CATTAATATCCATGGCTTTA+AGG | + | chr2_3:27710721-27710740 | None:intergenic | 30.0% |
| AGCATATGTATTCTGTGTCA+AGG | - | chr2_3:27708067-27708086 | Msa0286500:three_prime_UTR | 35.0% | |
| GCATATGTATTCTGTGTCAA+GGG | - | chr2_3:27708068-27708087 | Msa0286500:three_prime_UTR | 35.0% | |
| ! | TTAGTTGTCCTGTTTTCCAA+TGG | - | chr2_3:27708112-27708131 | Msa0286500:three_prime_UTR | 35.0% |
| TGCTGTAAAAAAAGCCATTG+AGG | - | chr2_3:27708219-27708238 | Msa0286500:three_prime_UTR | 35.0% | |
| GCTGTAAAAAAAGCCATTGA+GGG | - | chr2_3:27708220-27708239 | Msa0286500:three_prime_UTR | 35.0% | |
| CTGTAAAAAAAGCCATTGAG+GGG | - | chr2_3:27708221-27708240 | Msa0286500:three_prime_UTR | 35.0% | |
| TCATTTCTTTGCGGTGAATA+TGG | + | chr2_3:27708364-27708383 | None:intergenic | 35.0% | |
| TCCCTTTATGGAATCCATAT+TGG | - | chr2_3:27708714-27708733 | Msa0286500:intron | 35.0% | |
| GAAAAGAGTTCCTACCAATA+TGG | + | chr2_3:27708731-27708750 | None:intergenic | 35.0% | |
| AAGTTCAATCTGATAGGTGA+AGG | - | chr2_3:27708787-27708806 | Msa0286500:CDS | 35.0% | |
| TTGTTAGGATCCAATATGAG+AGG | - | chr2_3:27708826-27708845 | Msa0286500:intron | 35.0% | |
| TGTTAGGATCCAATATGAGA+GGG | - | chr2_3:27708827-27708846 | Msa0286500:intron | 35.0% | |
| CTTAAAACACCCTCTCATAT+TGG | + | chr2_3:27708839-27708858 | None:intergenic | 35.0% | |
| ! | ATTCTTTCGTTGTGTCATTG+TGG | - | chr2_3:27709144-27709163 | Msa0286500:intron | 35.0% |
| AAATGGGACAAAATTGTGAG+AGG | - | chr2_3:27709250-27709269 | Msa0286500:intron | 35.0% | |
| GCCATCTATATTCTATAGCT+TGG | - | chr2_3:27709340-27709359 | Msa0286500:intron | 35.0% | |
| CCCAAGCTATAGAATATAGA+TGG | + | chr2_3:27709344-27709363 | None:intergenic | 35.0% | |
| ! | TTCAACGTTAGTTTAGGTGA+TGG | + | chr2_3:27709429-27709448 | None:intergenic | 35.0% |
| ACGGAAAAATGACTACTGAA+TGG | + | chr2_3:27709502-27709521 | None:intergenic | 35.0% | |
| ! | AAATCCTAGAGCCTCTAAAA+CGG | + | chr2_3:27709521-27709540 | None:intergenic | 35.0% |
| CTGCTCTCCTAAAGATAATA+TGG | - | chr2_3:27709593-27709612 | Msa0286500:intron | 35.0% | |
| CGGAAGTTAAGAACATGATT+TGG | - | chr2_3:27709620-27709639 | Msa0286500:intron | 35.0% | |
| GCAATACATCATCTCTGTTT+GGG | + | chr2_3:27709781-27709800 | None:intergenic | 35.0% | |
| TGCAATACATCATCTCTGTT+TGG | + | chr2_3:27709782-27709801 | None:intergenic | 35.0% | |
| TGAATGTGGGAATTCAATCA+GGG | + | chr2_3:27710030-27710049 | None:intergenic | 35.0% | |
| TTGAATGTGGGAATTCAATC+AGG | + | chr2_3:27710031-27710050 | None:intergenic | 35.0% | |
| ! | CCAATCTGTTAGTTTGAATG+TGG | + | chr2_3:27710044-27710063 | None:intergenic | 35.0% |
| CCACATTCAAACTAACAGAT+TGG | - | chr2_3:27710041-27710060 | Msa0286500:intron | 35.0% | |
| CATTCAAACTAACAGATTGG+TGG | - | chr2_3:27710044-27710063 | Msa0286500:intron | 35.0% | |
| TAACAGATTGGTGGAAGATT+GGG | - | chr2_3:27710053-27710072 | Msa0286500:intron | 35.0% | |
| TGTCAAACTAATAAACGTGG+AGG | + | chr2_3:27710198-27710217 | None:intergenic | 35.0% | |
| TGGTCAACTGACATATATTC+GGG | - | chr2_3:27710245-27710264 | Msa0286500:intron | 35.0% | |
| ! | AAAATCCACGTTTTTCTGTC+AGG | + | chr2_3:27710387-27710406 | None:intergenic | 35.0% |
| ATCATTAACTAATTGGCCAG+GGG | + | chr2_3:27710442-27710461 | None:intergenic | 35.0% | |
| CTATCATTAACTAATTGGCC+AGG | + | chr2_3:27710444-27710463 | None:intergenic | 35.0% | |
| AGGCCTTTAGTAGATATACA+AGG | - | chr2_3:27710524-27710543 | Msa0286500:CDS | 35.0% | |
| TTCTGCAAAATGACCAATCA+CGG | + | chr2_3:27710578-27710597 | None:intergenic | 35.0% | |
| !! | ACTAAACTGTGTGCTATTTG+AGG | - | chr2_3:27710784-27710803 | Msa0286500:intron | 35.0% |
| !! | CTAAACTGTGTGCTATTTGA+GGG | - | chr2_3:27710785-27710804 | Msa0286500:intron | 35.0% |
| ! | TTGTCCTGTTTTCCAATGGT+TGG | - | chr2_3:27708116-27708135 | Msa0286500:three_prime_UTR | 40.0% |
| ! | TCTGATAAAGTGCCAACCAT+TGG | + | chr2_3:27708131-27708150 | None:intergenic | 40.0% |
| TTTGTGATTGCAGGCACATT+TGG | - | chr2_3:27708186-27708205 | Msa0286500:three_prime_UTR | 40.0% | |
| ! | GGGATTTTGAGCAACTATGA+TGG | - | chr2_3:27708241-27708260 | Msa0286500:three_prime_UTR | 40.0% |
| CCTATGGCATCATTTCTTTG+CGG | + | chr2_3:27708373-27708392 | None:intergenic | 40.0% | |
| ACAGTTCAAACTTAGAGGAG+AGG | + | chr2_3:27708641-27708660 | None:intergenic | 40.0% | |
| TTATTAGTGAGTGGCCCATT+AGG | - | chr2_3:27708892-27708911 | Msa0286500:intron | 40.0% | |
| GCTTGGGTGTCTAATATATC+TGG | - | chr2_3:27709357-27709376 | Msa0286500:intron | 40.0% | |
| !!! | TTTTCCGTTTTAGAGGCTCT+AGG | - | chr2_3:27709514-27709533 | Msa0286500:intron | 40.0% |
| TGATACTGCTCACAGAAGAT+GGG | - | chr2_3:27709832-27709851 | Msa0286500:intron | 40.0% | |
| AGAAATTGCAGAGATTGCAG+AGG | + | chr2_3:27709902-27709921 | None:intergenic | 40.0% | |
| ATACATTGACAGCATCAACG+AGG | - | chr2_3:27709922-27709941 | Msa0286500:intron | 40.0% | |
| GAGGACTTCATTGCAGTTAT+AGG | - | chr2_3:27709941-27709960 | Msa0286500:intron | 40.0% | |
| CTAACAGATTGGTGGAAGAT+TGG | - | chr2_3:27710052-27710071 | Msa0286500:intron | 40.0% | |
| ! | AACCTACTGTATTTGCTAGC+TGG | + | chr2_3:27710317-27710336 | None:intergenic | 40.0% |
| GCTAGCAAATACAGTAGGTT+AGG | - | chr2_3:27710317-27710336 | Msa0286500:intron | 40.0% | |
| CCATGCAACGGAAAAACAAT+CGG | + | chr2_3:27710353-27710372 | None:intergenic | 40.0% | |
| GTCTCTTCTTATCCATGCAA+CGG | + | chr2_3:27710365-27710384 | None:intergenic | 40.0% | |
| TCATTAACTAATTGGCCAGG+GGG | + | chr2_3:27710441-27710460 | None:intergenic | 40.0% | |
| ! | TTTTGCAGAAGTTCTGTAGC+AGG | - | chr2_3:27710588-27710607 | Msa0286500:CDS | 40.0% |
| TCTCTTCTTCCTTAAAGCCA+TGG | - | chr2_3:27710709-27710728 | Msa0286500:intron | 40.0% | |
| ! | TGCTATTTGAGGGCATACAT+CGG | - | chr2_3:27710795-27710814 | Msa0286500:CDS | 40.0% |
| AGTGCCAACCATTGGAAAAC+AGG | + | chr2_3:27708123-27708142 | None:intergenic | 45.0% | |
| GTTGCTCAAAATCCCCTCAA+TGG | + | chr2_3:27708236-27708255 | None:intergenic | 45.0% | |
| AGAAACATCCGAAGAAAGCG+AGG | - | chr2_3:27708318-27708337 | Msa0286500:exon | 45.0% | |
| ACCATGAACCTCGCTTTCTT+CGG | + | chr2_3:27708329-27708348 | None:intergenic | 45.0% | |
| CCGCAAAGAAATGATGCCAT+AGG | - | chr2_3:27708370-27708389 | Msa0286500:intron | 45.0% | |
| ! | TGCCATAGGTCTCTCTTTTC+AGG | - | chr2_3:27708384-27708403 | Msa0286500:intron | 45.0% |
| ! | GCCATAGGTCTCTCTTTTCA+GGG | - | chr2_3:27708385-27708404 | Msa0286500:intron | 45.0% |
| TCCCTGAAAAGAGAGACCTA+TGG | + | chr2_3:27708389-27708408 | None:intergenic | 45.0% | |
| !!! | ATTGGCTTTTGACAGTGTCG+TGG | + | chr2_3:27708759-27708778 | None:intergenic | 45.0% |
| ! | TAGGTGAAGGCACACACAAA+AGG | - | chr2_3:27708800-27708819 | Msa0286500:CDS | 45.0% |
| ! | AGGGGAATTAGGAGTTCTAG+AGG | - | chr2_3:27708976-27708995 | Msa0286500:CDS | 45.0% |
| !! | GGAATTAGGAGTTCTAGAGG+AGG | - | chr2_3:27708979-27708998 | Msa0286500:CDS | 45.0% |
| TTCGATGGCACAAGTCAAAG+AGG | + | chr2_3:27709027-27709046 | None:intergenic | 45.0% | |
| !! | CTTCTAGAGCAAAGCTTCGA+TGG | + | chr2_3:27709042-27709061 | None:intergenic | 45.0% |
| GTGATACTGCTCACAGAAGA+TGG | - | chr2_3:27709831-27709850 | Msa0286500:intron | 45.0% | |
| AAGATGGGCAAAGCTTCTGA+GGG | - | chr2_3:27709847-27709866 | Msa0286500:intron | 45.0% | |
| ! | AGATTGGGATACAGCATCGA+TGG | - | chr2_3:27710068-27710087 | Msa0286500:intron | 45.0% |
| !! | GATTGGGATACAGCATCGAT+GGG | - | chr2_3:27710069-27710088 | Msa0286500:intron | 45.0% |
| ATTCGGGCAAGAGTTTGATC+TGG | - | chr2_3:27710261-27710280 | Msa0286500:intron | 45.0% | |
| !! | CCGATTGTTTTTCCGTTGCA+TGG | - | chr2_3:27710350-27710369 | Msa0286500:intron | 45.0% |
| AGAGACCTGACAGAAAAACG+TGG | - | chr2_3:27710379-27710398 | Msa0286500:intron | 45.0% | |
| ! | AGATTTCTGATTTTCCCCCC+TGG | - | chr2_3:27710423-27710442 | Msa0286500:intron | 45.0% |
| CATTAACTAATTGGCCAGGG+GGG | + | chr2_3:27710440-27710459 | None:intergenic | 45.0% | |
| ! | GATTGCAGGCACATTTGGTG+CGG | - | chr2_3:27708191-27708210 | Msa0286500:three_prime_UTR | 50.0% |
| !! | ATTGCAGGCACATTTGGTGC+GGG | - | chr2_3:27708192-27708211 | Msa0286500:three_prime_UTR | 50.0% |
| GTTGCTGCAGCAATTGCTTG+TGG | - | chr2_3:27708283-27708302 | Msa0286500:three_prime_UTR | 50.0% | |
| TCCGAAGAAAGCGAGGTTCA+TGG | - | chr2_3:27708325-27708344 | Msa0286500:exon | 50.0% | |
| GAAGATGGGCAAAGCTTCTG+AGG | - | chr2_3:27709846-27709865 | Msa0286500:intron | 50.0% | |
| GACAGTGCAGTCATACACCA+AGG | - | chr2_3:27710091-27710110 | Msa0286500:intron | 50.0% | |
| GGCCAGCTAGCAAATACAGT+AGG | - | chr2_3:27710312-27710331 | Msa0286500:intron | 50.0% | |
| ! | GAGCATTGTGTAGCCGTGAT+TGG | - | chr2_3:27710562-27710581 | Msa0286500:CDS | 50.0% |
| ! | GCAAAGCTTCTGAGGGATCG+TGG | - | chr2_3:27709854-27709873 | Msa0286500:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_3 | gene | 27708042 | 27710839 | 27708042 | ID=Msa0286500;Name=Msa0286500 |
| chr2_3 | mRNA | 27708042 | 27710839 | 27708042 | ID=Msa0286500-mRNA-1;Parent=Msa0286500;Name=Msa0286500-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.75|0.8|1|1|1|5|290|187 |
| chr2_3 | exon | 27708042 | 27708355 | 27708042 | ID=Msa0286500-mRNA-1:exon:9945;Parent=Msa0286500-mRNA-1 |
| chr2_3 | exon | 27708769 | 27708822 | 27708769 | ID=Msa0286500-mRNA-1:exon:9944;Parent=Msa0286500-mRNA-1 |
| chr2_3 | exon | 27708914 | 27709094 | 27708914 | ID=Msa0286500-mRNA-1:exon:9943;Parent=Msa0286500-mRNA-1 |
| chr2_3 | exon | 27710426 | 27710682 | 27710426 | ID=Msa0286500-mRNA-1:exon:9942;Parent=Msa0286500-mRNA-1 |
| chr2_3 | exon | 27710792 | 27710839 | 27710792 | ID=Msa0286500-mRNA-1:exon:9941;Parent=Msa0286500-mRNA-1 |
| chr2_3 | CDS | 27710792 | 27710839 | 27710792 | ID=Msa0286500-mRNA-1:cds;Parent=Msa0286500-mRNA-1 |
| chr2_3 | CDS | 27710426 | 27710682 | 27710426 | ID=Msa0286500-mRNA-1:cds;Parent=Msa0286500-mRNA-1 |
| chr2_3 | CDS | 27708914 | 27709094 | 27708914 | ID=Msa0286500-mRNA-1:cds;Parent=Msa0286500-mRNA-1 |
| chr2_3 | CDS | 27708769 | 27708822 | 27708769 | ID=Msa0286500-mRNA-1:cds;Parent=Msa0286500-mRNA-1 |
| chr2_3 | CDS | 27708332 | 27708355 | 27708332 | ID=Msa0286500-mRNA-1:cds;Parent=Msa0286500-mRNA-1 |
| chr2_3 | three_prime_UTR | 27708042 | 27708331 | 27708042 | ID=Msa0286500-mRNA-1:three_prime_utr;Parent=Msa0286500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
