Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450890 | G7IV73 | 96.785 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1170990 | Msa1450890 | 0.963752 | 1.797702e-122 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450890 | MtrunA17_Chr3g0108541 | 96.785 | 311 | 10 | 0 | 1 | 311 | 1 | 311 | 0.0 | 607 |
| Msa1450890 | MtrunA17_Chr8g0358861 | 60.726 | 303 | 91 | 11 | 5 | 301 | 4 | 284 | 8.42e-113 | 328 |
| Msa1450890 | MtrunA17_Chr5g0432911 | 53.994 | 313 | 131 | 5 | 1 | 311 | 1 | 302 | 6.06e-111 | 323 |
| Msa1450890 | MtrunA17_Chr7g0245311 | 55.519 | 308 | 129 | 4 | 12 | 311 | 8 | 315 | 6.06e-95 | 283 |
| Msa1450890 | MtrunA17_Chr8g0347761 | 36.364 | 297 | 173 | 7 | 15 | 308 | 12 | 295 | 1.35e-48 | 164 |
| Msa1450890 | MtrunA17_Chr3g0080411 | 33.333 | 327 | 185 | 13 | 5 | 310 | 6 | 320 | 8.70e-34 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1450890 | AT3G08600.1 | 50.000 | 278 | 133 | 5 | 38 | 309 | 37 | 314 | 2.66e-72 | 226 |
| Msa1450890 | AT4G11950.1 | 33.110 | 299 | 175 | 11 | 34 | 307 | 25 | 323 | 1.21e-36 | 134 |
| Msa1450890 | AT4G22900.1 | 32.459 | 305 | 175 | 10 | 34 | 308 | 27 | 330 | 2.70e-35 | 130 |
| Msa1450890 | AT4G01140.1 | 27.798 | 277 | 176 | 9 | 38 | 306 | 34 | 294 | 1.30e-25 | 104 |
| Msa1450890 | AT4G23720.1 | 29.268 | 287 | 168 | 11 | 37 | 309 | 44 | 309 | 1.26e-24 | 101 |
| Msa1450890 | AT1G62981.2 | 31.579 | 266 | 154 | 10 | 1 | 243 | 11 | 271 | 4.18e-23 | 97.8 |
| Msa1450890 | AT1G62981.1 | 31.579 | 266 | 154 | 10 | 1 | 243 | 11 | 271 | 4.18e-23 | 97.8 |
Find 71 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAAGATTATGCCTTTA+AGG | 0.105684 | tig0033144:+3988 | Msa1450890:CDS |
| TCATGAAACTTAACCAAAAT+TGG | 0.163939 | tig0033144:-4343 | None:intergenic |
| CAGACAAATTTCCTAAATTA+TGG | 0.180943 | tig0033144:-4198 | None:intergenic |
| TGGCTTAACAAGAGCCTTAA+AGG | 0.190436 | tig0033144:-4002 | None:intergenic |
| AGCTTCTGATAAACCAATTT+TGG | 0.190677 | tig0033144:+4330 | Msa1450890:CDS |
| GTTGATTATGTTGAGTTTAT+TGG | 0.202989 | tig0033144:+4615 | Msa1450890:CDS |
| GTATTGGTTTACCATAATTT+AGG | 0.208392 | tig0033144:+4187 | Msa1450890:CDS |
| TACATATTTAGCTCCTGTTT+TGG | 0.224624 | tig0033144:+4246 | Msa1450890:CDS |
| ACAGCAGCAGCAACAGCAGC+AGG | 0.242579 | tig0033144:-4523 | None:intergenic |
| ATAGTTGAACACACATTATC+AGG | 0.305654 | tig0033144:-4448 | None:intergenic |
| CTTTGCAGATGAAATCTATT+GGG | 0.309305 | tig0033144:+4710 | Msa1450890:CDS |
| AGATCAAAATACACGCATTT+AGG | 0.314934 | tig0033144:-4394 | None:intergenic |
| TTGACACCTATTATACTATT+AGG | 0.316806 | tig0033144:-4055 | None:intergenic |
| ACTTTGCAGATGAAATCTAT+TGG | 0.317889 | tig0033144:+4709 | Msa1450890:CDS |
| CCCAATTGCTAATGGTGCTT+TGG | 0.324006 | tig0033144:-4737 | None:intergenic |
| GATTTGCCTAATAGTATAAT+AGG | 0.337280 | tig0033144:+4049 | Msa1450890:CDS |
| TTGGGTCTATTGTCATATAG+TGG | 0.342130 | tig0033144:+4265 | Msa1450890:CDS |
| TGCTAATGAGTTACCTGAAT+TGG | 0.342765 | tig0033144:+4300 | Msa1450890:CDS |
| GCTGCTGTTGCTGCTGCTGT+TGG | 0.368398 | tig0033144:+4526 | Msa1450890:CDS |
| TGATAATGTGTGTTCAACTA+TGG | 0.380178 | tig0033144:+4450 | Msa1450890:CDS |
| AGGGATGAAGATACAGGAAT+TGG | 0.385686 | tig0033144:+4663 | Msa1450890:CDS |
| GTTCTAGTCCCAATTGCTAA+TGG | 0.392449 | tig0033144:-4745 | None:intergenic |
| TCTAAGGTTTGGATAATTGT+TGG | 0.393849 | tig0033144:+4568 | Msa1450890:CDS |
| AGGTGGGAGGAGAAAGTCTA+AGG | 0.398046 | tig0033144:+4552 | Msa1450890:CDS |
| ACCAAAGCACCATTAGCAAT+TGG | 0.399097 | tig0033144:+4736 | Msa1450890:CDS |
| GAAGCTCTTACATCCAATTC+AGG | 0.401560 | tig0033144:-4313 | None:intergenic |
| TGGGTCTATTGTCATATAGT+GGG | 0.405967 | tig0033144:+4266 | Msa1450890:CDS |
| GAGTTTATTGGTTGTTAGAT+TGG | 0.414840 | tig0033144:+4627 | Msa1450890:CDS |
| GCAGCAACAGCAGCAGGCGC+CGG | 0.425165 | tig0033144:-4517 | None:intergenic |
| TTATGTGGAAAGGCTTGTAT+TGG | 0.433864 | tig0033144:+4171 | Msa1450890:CDS |
| ATGTAATCATTCTCTATTGT+TGG | 0.457675 | tig0033144:-4772 | None:intergenic |
| GATGAAATACCGTCATCAAA+TGG | 0.458322 | tig0033144:-3947 | None:intergenic |
| AATATGTATAACCAGGTAAA+GGG | 0.462149 | tig0033144:-4231 | None:intergenic |
| GTTGCTGCTGCTGTTGGTAA+AGG | 0.468252 | tig0033144:+4532 | Msa1450890:CDS |
| AAATATGTATAACCAGGTAA+AGG | 0.470692 | tig0033144:-4232 | None:intergenic |
| GGAGGAGAAAGTCTAAGGTT+TGG | 0.472150 | tig0033144:+4557 | Msa1450890:CDS |
| AATCTTGAAGAACAGAATCA+AGG | 0.481363 | tig0033144:-3976 | None:intergenic |
| ATTGTTGGATCTGTGGTTGG+TGG | 0.482657 | tig0033144:+4583 | Msa1450890:CDS |
| CCAAAGCACCATTAGCAATT+GGG | 0.487031 | tig0033144:+4737 | Msa1450890:CDS |
| GCTGCTGCTGTTGGTAAAGG+TGG | 0.491153 | tig0033144:+4535 | Msa1450890:CDS |
| TATTGGTTGTTAGATTGGTA+AGG | 0.493756 | tig0033144:+4632 | Msa1450890:CDS |
| GATGTGAAATCAGCACCTTA+TGG | 0.496310 | tig0033144:+4364 | Msa1450890:CDS |
| ACAGCAGCAGGCGCCGGTGT+CGG | 0.498680 | tig0033144:-4511 | None:intergenic |
| TATGACAATAGACCCAAAAC+AGG | 0.500320 | tig0033144:-4259 | None:intergenic |
| AATACAAGCCTTTCCACATA+AGG | 0.501306 | tig0033144:-4169 | None:intergenic |
| ATAATTGTTGGATCTGTGGT+TGG | 0.520856 | tig0033144:+4580 | Msa1450890:CDS |
| TTGGATAATTGTTGGATCTG+TGG | 0.525852 | tig0033144:+4576 | Msa1450890:CDS |
| AGTGGTAGTTTAAGAACAAG+AGG | 0.528131 | tig0033144:+4100 | Msa1450890:CDS |
| GTGTCAAAGTTTCAGCATTG+AGG | 0.541279 | tig0033144:+4071 | Msa1450890:CDS |
| TGTTGTTGAACAGCCTTATG+TGG | 0.542621 | tig0033144:+4156 | Msa1450890:CDS |
| GGGTCTATTGTCATATAGTG+GGG | 0.544015 | tig0033144:+4267 | Msa1450890:CDS |
| CTGCTGCTGTTGGTAAAGGT+GGG | 0.546962 | tig0033144:+4536 | Msa1450890:CDS |
| TGAAGATACAGGAATTGGAA+TGG | 0.550227 | tig0033144:+4668 | Msa1450890:CDS |
| ATCTTGAAGAACAGAATCAA+GGG | 0.551423 | tig0033144:-3975 | None:intergenic |
| TTGAACAGCCTTATGTGGAA+AGG | 0.551692 | tig0033144:+4161 | Msa1450890:CDS |
| TTTGCAGATGAAATCTATTG+GGG | 0.555209 | tig0033144:+4711 | Msa1450890:CDS |
| GCTCAGATTCCATTTGATGA+CGG | 0.578562 | tig0033144:+3938 | Msa1450890:CDS |
| CGAGTCTAATGCACCGACAC+CGG | 0.583880 | tig0033144:+4498 | Msa1450890:CDS |
| CATTTAGGTACTGAACCATA+AGG | 0.585743 | tig0033144:-4379 | None:intergenic |
| GTGTGTTCAACTATGGAACA+AGG | 0.604141 | tig0033144:+4457 | Msa1450890:CDS |
| ATGGCAATGTGAAAATTGCA+AGG | 0.609309 | tig0033144:-3886 | None:intergenic |
| GGCTGTTCAACAACACCAGG+TGG | 0.614407 | tig0033144:-4148 | None:intergenic |
| AATGACAGTGAAAGAAACAA+TGG | 0.614857 | tig0033144:-3905 | None:intergenic |
| CTGCTGTTGGTAAAGGTGGG+AGG | 0.618044 | tig0033144:+4539 | Msa1450890:CDS |
| TAAGGCTGTTCAACAACACC+AGG | 0.642490 | tig0033144:-4151 | None:intergenic |
| AAAGAGTTTCAGATCCCACC+TGG | 0.650705 | tig0033144:+4133 | Msa1450890:CDS |
| TCAGCATTGAGGCTTAGAAG+TGG | 0.655725 | tig0033144:+4082 | Msa1450890:CDS |
| GGAGCTAAATATGTATAACC+AGG | 0.659963 | tig0033144:-4238 | None:intergenic |
| TGTGTTCAACTATGGAACAA+GGG | 0.692925 | tig0033144:+4458 | Msa1450890:CDS |
| GCTGTTCAACAACACCAGGT+GGG | 0.697640 | tig0033144:-4147 | None:intergenic |
| TTGCAGATGAAATCTATTGG+GGG | 0.701902 | tig0033144:+4712 | Msa1450890:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GATTTGCCTAATAGTATAAT+AGG | + | tig0033144:4049-4068 | Msa1450890:CDS | 25.0% |
| ! | TTGACACCTATTATACTATT+AGG | - | tig0033144:4058-4077 | None:intergenic | 25.0% |
| !!! | GTATTGGTTTACCATAATTT+AGG | + | tig0033144:4187-4206 | Msa1450890:CDS | 25.0% |
| ! | CAGACAAATTTCCTAAATTA+TGG | - | tig0033144:4201-4220 | None:intergenic | 25.0% |
| ! | AATATGTATAACCAGGTAAA+GGG | - | tig0033144:4234-4253 | None:intergenic | 25.0% |
| ! | AAATATGTATAACCAGGTAA+AGG | - | tig0033144:4235-4254 | None:intergenic | 25.0% |
| ! | TCATGAAACTTAACCAAAAT+TGG | - | tig0033144:4346-4365 | None:intergenic | 25.0% |
| ! | GTTGATTATGTTGAGTTTAT+TGG | + | tig0033144:4615-4634 | Msa1450890:CDS | 25.0% |
| ! | ATGTAATCATTCTCTATTGT+TGG | - | tig0033144:4775-4794 | None:intergenic | 25.0% |
| ! | GATTTGCCTAATAGTATAAT+AGG | + | tig0033144:4049-4068 | Msa1450890:CDS | 25.0% |
| ! | TTGACACCTATTATACTATT+AGG | - | tig0033144:4058-4077 | None:intergenic | 25.0% |
| !!! | GTATTGGTTTACCATAATTT+AGG | + | tig0033144:4187-4206 | Msa1450890:CDS | 25.0% |
| ! | CAGACAAATTTCCTAAATTA+TGG | - | tig0033144:4201-4220 | None:intergenic | 25.0% |
| ! | AATATGTATAACCAGGTAAA+GGG | - | tig0033144:4234-4253 | None:intergenic | 25.0% |
| ! | AAATATGTATAACCAGGTAA+AGG | - | tig0033144:4235-4254 | None:intergenic | 25.0% |
| ! | TCATGAAACTTAACCAAAAT+TGG | - | tig0033144:4346-4365 | None:intergenic | 25.0% |
| ! | GTTGATTATGTTGAGTTTAT+TGG | + | tig0033144:4615-4634 | Msa1450890:CDS | 25.0% |
| ! | ATGTAATCATTCTCTATTGT+TGG | - | tig0033144:4775-4794 | None:intergenic | 25.0% |
| AATGACAGTGAAAGAAACAA+TGG | - | tig0033144:3908-3927 | None:intergenic | 30.0% | |
| ATCTTGAAGAACAGAATCAA+GGG | - | tig0033144:3978-3997 | None:intergenic | 30.0% | |
| AATCTTGAAGAACAGAATCA+AGG | - | tig0033144:3979-3998 | None:intergenic | 30.0% | |
| TCTTCAAGATTATGCCTTTA+AGG | + | tig0033144:3988-4007 | Msa1450890:CDS | 30.0% | |
| ! | TCATAAACTACACCAGTTTT+TGG | - | tig0033144:4025-4044 | None:intergenic | 30.0% |
| !! | TACATATTTAGCTCCTGTTT+TGG | + | tig0033144:4246-4265 | Msa1450890:CDS | 30.0% |
| !! | ACATATTTAGCTCCTGTTTT+GGG | + | tig0033144:4247-4266 | Msa1450890:CDS | 30.0% |
| ! | AGCTTCTGATAAACCAATTT+TGG | + | tig0033144:4330-4349 | Msa1450890:CDS | 30.0% |
| AGATCAAAATACACGCATTT+AGG | - | tig0033144:4397-4416 | None:intergenic | 30.0% | |
| !!! | GTATTTTGATCTACATGGTT+CGG | + | tig0033144:4405-4424 | Msa1450890:CDS | 30.0% |
| ATAGTTGAACACACATTATC+AGG | - | tig0033144:4451-4470 | None:intergenic | 30.0% | |
| ! | TGATAATGTGTGTTCAACTA+TGG | + | tig0033144:4450-4469 | Msa1450890:CDS | 30.0% |
| ! | TCTAAGGTTTGGATAATTGT+TGG | + | tig0033144:4568-4587 | Msa1450890:CDS | 30.0% |
| ! | GAGTTTATTGGTTGTTAGAT+TGG | + | tig0033144:4627-4646 | Msa1450890:CDS | 30.0% |
| ! | TATTGGTTGTTAGATTGGTA+AGG | + | tig0033144:4632-4651 | Msa1450890:CDS | 30.0% |
| AGATTGGTAAGGATCAAAAA+AGG | + | tig0033144:4643-4662 | Msa1450890:CDS | 30.0% | |
| GATTGGTAAGGATCAAAAAA+GGG | + | tig0033144:4644-4663 | Msa1450890:CDS | 30.0% | |
| ACTTTGCAGATGAAATCTAT+TGG | + | tig0033144:4709-4728 | Msa1450890:CDS | 30.0% | |
| CTTTGCAGATGAAATCTATT+GGG | + | tig0033144:4710-4729 | Msa1450890:CDS | 30.0% | |
| TTTGCAGATGAAATCTATTG+GGG | + | tig0033144:4711-4730 | Msa1450890:CDS | 30.0% | |
| AATGACAGTGAAAGAAACAA+TGG | - | tig0033144:3908-3927 | None:intergenic | 30.0% | |
| ATCTTGAAGAACAGAATCAA+GGG | - | tig0033144:3978-3997 | None:intergenic | 30.0% | |
| AATCTTGAAGAACAGAATCA+AGG | - | tig0033144:3979-3998 | None:intergenic | 30.0% | |
| TCTTCAAGATTATGCCTTTA+AGG | + | tig0033144:3988-4007 | Msa1450890:CDS | 30.0% | |
| ! | TCATAAACTACACCAGTTTT+TGG | - | tig0033144:4025-4044 | None:intergenic | 30.0% |
| !! | TACATATTTAGCTCCTGTTT+TGG | + | tig0033144:4246-4265 | Msa1450890:CDS | 30.0% |
| !! | ACATATTTAGCTCCTGTTTT+GGG | + | tig0033144:4247-4266 | Msa1450890:CDS | 30.0% |
| ! | AGCTTCTGATAAACCAATTT+TGG | + | tig0033144:4330-4349 | Msa1450890:CDS | 30.0% |
| AGATCAAAATACACGCATTT+AGG | - | tig0033144:4397-4416 | None:intergenic | 30.0% | |
| !!! | GTATTTTGATCTACATGGTT+CGG | + | tig0033144:4405-4424 | Msa1450890:CDS | 30.0% |
| ATAGTTGAACACACATTATC+AGG | - | tig0033144:4451-4470 | None:intergenic | 30.0% | |
| ! | TGATAATGTGTGTTCAACTA+TGG | + | tig0033144:4450-4469 | Msa1450890:CDS | 30.0% |
| ! | TCTAAGGTTTGGATAATTGT+TGG | + | tig0033144:4568-4587 | Msa1450890:CDS | 30.0% |
| ! | GAGTTTATTGGTTGTTAGAT+TGG | + | tig0033144:4627-4646 | Msa1450890:CDS | 30.0% |
| ! | TATTGGTTGTTAGATTGGTA+AGG | + | tig0033144:4632-4651 | Msa1450890:CDS | 30.0% |
| AGATTGGTAAGGATCAAAAA+AGG | + | tig0033144:4643-4662 | Msa1450890:CDS | 30.0% | |
| GATTGGTAAGGATCAAAAAA+GGG | + | tig0033144:4644-4663 | Msa1450890:CDS | 30.0% | |
| ACTTTGCAGATGAAATCTAT+TGG | + | tig0033144:4709-4728 | Msa1450890:CDS | 30.0% | |
| CTTTGCAGATGAAATCTATT+GGG | + | tig0033144:4710-4729 | Msa1450890:CDS | 30.0% | |
| TTTGCAGATGAAATCTATTG+GGG | + | tig0033144:4711-4730 | Msa1450890:CDS | 30.0% | |
| ATGGCAATGTGAAAATTGCA+AGG | - | tig0033144:3889-3908 | None:intergenic | 35.0% | |
| GATGAAATACCGTCATCAAA+TGG | - | tig0033144:3950-3969 | None:intergenic | 35.0% | |
| AGTGGTAGTTTAAGAACAAG+AGG | + | tig0033144:4100-4119 | Msa1450890:CDS | 35.0% | |
| AATACAAGCCTTTCCACATA+AGG | - | tig0033144:4172-4191 | None:intergenic | 35.0% | |
| TTATGTGGAAAGGCTTGTAT+TGG | + | tig0033144:4171-4190 | Msa1450890:CDS | 35.0% | |
| ! | GAACATTTTTACCCTTTACC+TGG | + | tig0033144:4220-4239 | Msa1450890:CDS | 35.0% |
| GGAGCTAAATATGTATAACC+AGG | - | tig0033144:4241-4260 | None:intergenic | 35.0% | |
| TATGACAATAGACCCAAAAC+AGG | - | tig0033144:4262-4281 | None:intergenic | 35.0% | |
| TTGGGTCTATTGTCATATAG+TGG | + | tig0033144:4265-4284 | Msa1450890:CDS | 35.0% | |
| TGGGTCTATTGTCATATAGT+GGG | + | tig0033144:4266-4285 | Msa1450890:CDS | 35.0% | |
| TGCTAATGAGTTACCTGAAT+TGG | + | tig0033144:4300-4319 | Msa1450890:CDS | 35.0% | |
| !! | CATTTAGGTACTGAACCATA+AGG | - | tig0033144:4382-4401 | None:intergenic | 35.0% |
| !!! | TGCGTGTATTTTGATCTACA+TGG | + | tig0033144:4400-4419 | Msa1450890:CDS | 35.0% |
| TGTGTTCAACTATGGAACAA+GGG | + | tig0033144:4458-4477 | Msa1450890:CDS | 35.0% | |
| TTGGATAATTGTTGGATCTG+TGG | + | tig0033144:4576-4595 | Msa1450890:CDS | 35.0% | |
| ATAATTGTTGGATCTGTGGT+TGG | + | tig0033144:4580-4599 | Msa1450890:CDS | 35.0% | |
| CAAAAAAGGGATGAAGATAC+AGG | + | tig0033144:4657-4676 | Msa1450890:CDS | 35.0% | |
| TGAAGATACAGGAATTGGAA+TGG | + | tig0033144:4668-4687 | Msa1450890:CDS | 35.0% | |
| TTGCAGATGAAATCTATTGG+GGG | + | tig0033144:4712-4731 | Msa1450890:CDS | 35.0% | |
| ATGGCAATGTGAAAATTGCA+AGG | - | tig0033144:3889-3908 | None:intergenic | 35.0% | |
| GATGAAATACCGTCATCAAA+TGG | - | tig0033144:3950-3969 | None:intergenic | 35.0% | |
| AGTGGTAGTTTAAGAACAAG+AGG | + | tig0033144:4100-4119 | Msa1450890:CDS | 35.0% | |
| AATACAAGCCTTTCCACATA+AGG | - | tig0033144:4172-4191 | None:intergenic | 35.0% | |
| TTATGTGGAAAGGCTTGTAT+TGG | + | tig0033144:4171-4190 | Msa1450890:CDS | 35.0% | |
| ! | GAACATTTTTACCCTTTACC+TGG | + | tig0033144:4220-4239 | Msa1450890:CDS | 35.0% |
| GGAGCTAAATATGTATAACC+AGG | - | tig0033144:4241-4260 | None:intergenic | 35.0% | |
| TATGACAATAGACCCAAAAC+AGG | - | tig0033144:4262-4281 | None:intergenic | 35.0% | |
| TTGGGTCTATTGTCATATAG+TGG | + | tig0033144:4265-4284 | Msa1450890:CDS | 35.0% | |
| TGGGTCTATTGTCATATAGT+GGG | + | tig0033144:4266-4285 | Msa1450890:CDS | 35.0% | |
| TGCTAATGAGTTACCTGAAT+TGG | + | tig0033144:4300-4319 | Msa1450890:CDS | 35.0% | |
| !! | CATTTAGGTACTGAACCATA+AGG | - | tig0033144:4382-4401 | None:intergenic | 35.0% |
| !!! | TGCGTGTATTTTGATCTACA+TGG | + | tig0033144:4400-4419 | Msa1450890:CDS | 35.0% |
| TGTGTTCAACTATGGAACAA+GGG | + | tig0033144:4458-4477 | Msa1450890:CDS | 35.0% | |
| TTGGATAATTGTTGGATCTG+TGG | + | tig0033144:4576-4595 | Msa1450890:CDS | 35.0% | |
| ATAATTGTTGGATCTGTGGT+TGG | + | tig0033144:4580-4599 | Msa1450890:CDS | 35.0% | |
| CAAAAAAGGGATGAAGATAC+AGG | + | tig0033144:4657-4676 | Msa1450890:CDS | 35.0% | |
| TGAAGATACAGGAATTGGAA+TGG | + | tig0033144:4668-4687 | Msa1450890:CDS | 35.0% | |
| TTGCAGATGAAATCTATTGG+GGG | + | tig0033144:4712-4731 | Msa1450890:CDS | 35.0% | |
| GCTCAGATTCCATTTGATGA+CGG | + | tig0033144:3938-3957 | Msa1450890:CDS | 40.0% | |
| TGGCTTAACAAGAGCCTTAA+AGG | - | tig0033144:4005-4024 | None:intergenic | 40.0% | |
| GCTCTTGTTAAGCCAAAAAC+TGG | + | tig0033144:4010-4029 | Msa1450890:CDS | 40.0% | |
| GTGTCAAAGTTTCAGCATTG+AGG | + | tig0033144:4071-4090 | Msa1450890:CDS | 40.0% | |
| ! | TGTTGTTGAACAGCCTTATG+TGG | + | tig0033144:4156-4175 | Msa1450890:CDS | 40.0% |
| ! | TTGAACAGCCTTATGTGGAA+AGG | + | tig0033144:4161-4180 | Msa1450890:CDS | 40.0% |
| GGGTCTATTGTCATATAGTG+GGG | + | tig0033144:4267-4286 | Msa1450890:CDS | 40.0% | |
| GAAGCTCTTACATCCAATTC+AGG | - | tig0033144:4316-4335 | None:intergenic | 40.0% | |
| GATGTGAAATCAGCACCTTA+TGG | + | tig0033144:4364-4383 | Msa1450890:CDS | 40.0% | |
| GTGTGTTCAACTATGGAACA+AGG | + | tig0033144:4457-4476 | Msa1450890:CDS | 40.0% | |
| AGGGATGAAGATACAGGAAT+TGG | + | tig0033144:4663-4682 | Msa1450890:CDS | 40.0% | |
| ! | ACCAAAGCACCATTAGCAAT+TGG | + | tig0033144:4736-4755 | Msa1450890:CDS | 40.0% |
| ! | CCAAAGCACCATTAGCAATT+GGG | + | tig0033144:4737-4756 | Msa1450890:CDS | 40.0% |
| GTTCTAGTCCCAATTGCTAA+TGG | - | tig0033144:4748-4767 | None:intergenic | 40.0% | |
| GCTCAGATTCCATTTGATGA+CGG | + | tig0033144:3938-3957 | Msa1450890:CDS | 40.0% | |
| TGGCTTAACAAGAGCCTTAA+AGG | - | tig0033144:4005-4024 | None:intergenic | 40.0% | |
| GCTCTTGTTAAGCCAAAAAC+TGG | + | tig0033144:4010-4029 | Msa1450890:CDS | 40.0% | |
| GTGTCAAAGTTTCAGCATTG+AGG | + | tig0033144:4071-4090 | Msa1450890:CDS | 40.0% | |
| ! | TGTTGTTGAACAGCCTTATG+TGG | + | tig0033144:4156-4175 | Msa1450890:CDS | 40.0% |
| ! | TTGAACAGCCTTATGTGGAA+AGG | + | tig0033144:4161-4180 | Msa1450890:CDS | 40.0% |
| GGGTCTATTGTCATATAGTG+GGG | + | tig0033144:4267-4286 | Msa1450890:CDS | 40.0% | |
| GAAGCTCTTACATCCAATTC+AGG | - | tig0033144:4316-4335 | None:intergenic | 40.0% | |
| GATGTGAAATCAGCACCTTA+TGG | + | tig0033144:4364-4383 | Msa1450890:CDS | 40.0% | |
| GTGTGTTCAACTATGGAACA+AGG | + | tig0033144:4457-4476 | Msa1450890:CDS | 40.0% | |
| AGGGATGAAGATACAGGAAT+TGG | + | tig0033144:4663-4682 | Msa1450890:CDS | 40.0% | |
| ! | ACCAAAGCACCATTAGCAAT+TGG | + | tig0033144:4736-4755 | Msa1450890:CDS | 40.0% |
| ! | CCAAAGCACCATTAGCAATT+GGG | + | tig0033144:4737-4756 | Msa1450890:CDS | 40.0% |
| GTTCTAGTCCCAATTGCTAA+TGG | - | tig0033144:4748-4767 | None:intergenic | 40.0% | |
| ! | TCAGCATTGAGGCTTAGAAG+TGG | + | tig0033144:4082-4101 | Msa1450890:CDS | 45.0% |
| AAAGAGTTTCAGATCCCACC+TGG | + | tig0033144:4133-4152 | Msa1450890:CDS | 45.0% | |
| TAAGGCTGTTCAACAACACC+AGG | - | tig0033144:4154-4173 | None:intergenic | 45.0% | |
| ! | GGAGGAGAAAGTCTAAGGTT+TGG | + | tig0033144:4557-4576 | Msa1450890:CDS | 45.0% |
| ATTGTTGGATCTGTGGTTGG+TGG | + | tig0033144:4583-4602 | Msa1450890:CDS | 45.0% | |
| CCCAATTGCTAATGGTGCTT+TGG | - | tig0033144:4740-4759 | None:intergenic | 45.0% | |
| ! | TCAGCATTGAGGCTTAGAAG+TGG | + | tig0033144:4082-4101 | Msa1450890:CDS | 45.0% |
| AAAGAGTTTCAGATCCCACC+TGG | + | tig0033144:4133-4152 | Msa1450890:CDS | 45.0% | |
| TAAGGCTGTTCAACAACACC+AGG | - | tig0033144:4154-4173 | None:intergenic | 45.0% | |
| ! | GGAGGAGAAAGTCTAAGGTT+TGG | + | tig0033144:4557-4576 | Msa1450890:CDS | 45.0% |
| ATTGTTGGATCTGTGGTTGG+TGG | + | tig0033144:4583-4602 | Msa1450890:CDS | 45.0% | |
| CCCAATTGCTAATGGTGCTT+TGG | - | tig0033144:4740-4759 | None:intergenic | 45.0% | |
| GCTGTTCAACAACACCAGGT+GGG | - | tig0033144:4150-4169 | None:intergenic | 50.0% | |
| ! | GTTGCTGCTGCTGTTGGTAA+AGG | + | tig0033144:4532-4551 | Msa1450890:CDS | 50.0% |
| ! | CTGCTGCTGTTGGTAAAGGT+GGG | + | tig0033144:4536-4555 | Msa1450890:CDS | 50.0% |
| AGGTGGGAGGAGAAAGTCTA+AGG | + | tig0033144:4552-4571 | Msa1450890:CDS | 50.0% | |
| GCTGTTCAACAACACCAGGT+GGG | - | tig0033144:4150-4169 | None:intergenic | 50.0% | |
| ! | GTTGCTGCTGCTGTTGGTAA+AGG | + | tig0033144:4532-4551 | Msa1450890:CDS | 50.0% |
| ! | CTGCTGCTGTTGGTAAAGGT+GGG | + | tig0033144:4536-4555 | Msa1450890:CDS | 50.0% |
| AGGTGGGAGGAGAAAGTCTA+AGG | + | tig0033144:4552-4571 | Msa1450890:CDS | 50.0% | |
| GGCTGTTCAACAACACCAGG+TGG | - | tig0033144:4151-4170 | None:intergenic | 55.0% | |
| ! | CGAGTCTAATGCACCGACAC+CGG | + | tig0033144:4498-4517 | Msa1450890:CDS | 55.0% |
| ! | GCTGCTGCTGTTGGTAAAGG+TGG | + | tig0033144:4535-4554 | Msa1450890:CDS | 55.0% |
| ! | CTGCTGTTGGTAAAGGTGGG+AGG | + | tig0033144:4539-4558 | Msa1450890:CDS | 55.0% |
| GGCTGTTCAACAACACCAGG+TGG | - | tig0033144:4151-4170 | None:intergenic | 55.0% | |
| ! | CGAGTCTAATGCACCGACAC+CGG | + | tig0033144:4498-4517 | Msa1450890:CDS | 55.0% |
| ! | GCTGCTGCTGTTGGTAAAGG+TGG | + | tig0033144:4535-4554 | Msa1450890:CDS | 55.0% |
| ! | CTGCTGTTGGTAAAGGTGGG+AGG | + | tig0033144:4539-4558 | Msa1450890:CDS | 55.0% |
| ACAGCAGCAGCAACAGCAGC+AGG | - | tig0033144:4526-4545 | None:intergenic | 60.0% | |
| GCTGCTGTTGCTGCTGCTGT+TGG | + | tig0033144:4526-4545 | Msa1450890:CDS | 60.0% | |
| ACAGCAGCAGCAACAGCAGC+AGG | - | tig0033144:4526-4545 | None:intergenic | 60.0% | |
| GCTGCTGTTGCTGCTGCTGT+TGG | + | tig0033144:4526-4545 | Msa1450890:CDS | 60.0% | |
| !! | ACAGCAGCAGGCGCCGGTGT+CGG | - | tig0033144:4514-4533 | None:intergenic | 70.0% |
| GCAGCAACAGCAGCAGGCGC+CGG | - | tig0033144:4520-4539 | None:intergenic | 70.0% | |
| !! | ACAGCAGCAGGCGCCGGTGT+CGG | - | tig0033144:4514-4533 | None:intergenic | 70.0% |
| GCAGCAACAGCAGCAGGCGC+CGG | - | tig0033144:4520-4539 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033144 | gene | 3866 | 4801 | 3866 | ID=Msa1450890;Name=Msa1450890 |
| tig0033144 | mRNA | 3866 | 4801 | 3866 | ID=Msa1450890-mRNA-1;Parent=Msa1450890;Name=Msa1450890-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|311 |
| tig0033144 | exon | 3866 | 4801 | 3866 | ID=Msa1450890-mRNA-1:exon:17737;Parent=Msa1450890-mRNA-1 |
| tig0033144 | CDS | 3866 | 4801 | 3866 | ID=Msa1450890-mRNA-1:cds;Parent=Msa1450890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
