Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170990 | XP_003600573.1 | 85.852 | 311 | 11 | 1 | 1 | 278 | 1 | 311 | 0.0 | 520 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170990 | G7IV73 | 85.852 | 311 | 11 | 1 | 1 | 278 | 1 | 311 | 0.0 | 520 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0649940 | Msa1170990 | 0.805873 | 1.081855e-49 | -8.615850e-47 |
| Msa0691980 | Msa1170990 | 0.832227 | 1.066419e-55 | -8.615850e-47 |
| Msa0430260 | Msa1170990 | 0.801105 | 1.053378e-48 | -8.615850e-47 |
| Msa1045140 | Msa1170990 | 0.800439 | 1.440555e-48 | -8.615850e-47 |
| Msa1170990 | Msa1232710 | 0.814140 | 1.792797e-51 | -8.615850e-47 |
| Msa1170990 | Msa1307570 | 0.808493 | 3.013877e-50 | -8.615850e-47 |
| Msa1170990 | Msa1313300 | 0.814503 | 1.490507e-51 | -8.615850e-47 |
| Msa1170990 | Msa1370010 | 0.831956 | 1.243677e-55 | -8.615850e-47 |
| Msa1170990 | Msa1450890 | 0.963752 | 1.797702e-122 | -8.615850e-47 |
| Msa1170990 | Msa1453740 | 0.804480 | 2.117302e-49 | -8.615850e-47 |
| Msa1170990 | Msa1459380 | 0.802414 | 5.675055e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170990 | MtrunA17_Chr3g0108541 | 85.852 | 311 | 11 | 1 | 1 | 278 | 1 | 311 | 0.0 | 520 |
| Msa1170990 | MtrunA17_Chr8g0358861 | 52.145 | 303 | 84 | 12 | 5 | 268 | 4 | 284 | 2.98e-85 | 256 |
| Msa1170990 | MtrunA17_Chr5g0432911 | 46.326 | 313 | 122 | 7 | 1 | 278 | 1 | 302 | 1.55e-83 | 253 |
| Msa1170990 | MtrunA17_Chr7g0245311 | 47.727 | 308 | 120 | 5 | 12 | 278 | 8 | 315 | 8.22e-69 | 215 |
| Msa1170990 | MtrunA17_Chr8g0347761 | 30.976 | 297 | 156 | 8 | 15 | 275 | 12 | 295 | 8.96e-30 | 114 |
| Msa1170990 | MtrunA17_Chr3g0080411 | 30.581 | 327 | 161 | 12 | 5 | 277 | 6 | 320 | 8.53e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1170990 | AT3G08600.1 | 42.086 | 278 | 122 | 6 | 38 | 276 | 37 | 314 | 1.71e-48 | 164 |
| Msa1170990 | AT4G22900.1 | 27.213 | 305 | 158 | 9 | 34 | 275 | 27 | 330 | 7.60e-23 | 96.7 |
| Msa1170990 | AT4G11950.1 | 27.090 | 299 | 160 | 10 | 34 | 274 | 25 | 323 | 1.57e-22 | 95.5 |
Find 60 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCAAGATTATGCCTTTA+AGG | 0.105684 | 8_1:-415177 | Msa1170990:CDS |
| TCATGAAACTTAACCAAAAT+TGG | 0.163939 | 8_1:+414823 | None:intergenic |
| TGGCTTAACAAGAGCCTTAA+AGG | 0.190436 | 8_1:+415163 | None:intergenic |
| AGCTTCTGATAAACCAATTT+TGG | 0.190677 | 8_1:-414836 | Msa1170990:CDS |
| GTTGATTATGTTGAGTTTAT+TGG | 0.202989 | 8_1:-414551 | Msa1170990:CDS |
| ACAGCAGCAGCAACAGCAGC+AGG | 0.242579 | 8_1:+414643 | None:intergenic |
| ATAGTTGAACACACATTATC+AGG | 0.305654 | 8_1:+414718 | None:intergenic |
| CTTTGCAGATGAAATCTATT+GGG | 0.309305 | 8_1:-414456 | Msa1170990:CDS |
| AGATCAAAATACACGCATTT+AGG | 0.314934 | 8_1:+414772 | None:intergenic |
| TTGACACCTATTATACTATT+AGG | 0.316806 | 8_1:+415110 | None:intergenic |
| ACTTTGCAGATGAAATCTAT+TGG | 0.317889 | 8_1:-414457 | Msa1170990:CDS |
| CCCAATTGCTAATGGTGCTT+TGG | 0.324006 | 8_1:+414429 | None:intergenic |
| GATTTGCCTAATAGTATAAT+AGG | 0.337280 | 8_1:-415116 | Msa1170990:CDS |
| TGCTAATGAGTTACCTGAAT+TGG | 0.342765 | 8_1:-414866 | Msa1170990:CDS |
| GCTGCTGTTGCTGCTGCTGT+TGG | 0.368398 | 8_1:-414640 | Msa1170990:CDS |
| TGATAATGTGTGTTCAACTA+TGG | 0.380178 | 8_1:-414716 | Msa1170990:CDS |
| AGGGATGAAGATACAGGAAT+TGG | 0.385686 | 8_1:-414503 | Msa1170990:CDS |
| GTTCTAGTCCCAATTGCTAA+TGG | 0.392449 | 8_1:+414421 | None:intergenic |
| TCTAAGGTTTGGATAATTGT+TGG | 0.393849 | 8_1:-414598 | Msa1170990:CDS |
| AGGTGGGAGGAGAAAGTCTA+AGG | 0.398046 | 8_1:-414614 | Msa1170990:CDS |
| ACCAAAGCACCATTAGCAAT+TGG | 0.399097 | 8_1:-414430 | Msa1170990:CDS |
| GAAGCTCTTACATCCAATTC+AGG | 0.401560 | 8_1:+414853 | None:intergenic |
| GAGTTTATTGGTTGTTAGAT+TGG | 0.414840 | 8_1:-414539 | Msa1170990:CDS |
| GCAGCAACAGCAGCAGGCGC+CGG | 0.425165 | 8_1:+414649 | None:intergenic |
| ATGTAATCATTCTCTATTGT+TGG | 0.457675 | 8_1:+414394 | None:intergenic |
| GATGAAATACCGTCATCAAA+TGG | 0.458322 | 8_1:+415218 | None:intergenic |
| GTTGCTGCTGCTGTTGGTAA+AGG | 0.468252 | 8_1:-414634 | Msa1170990:CDS |
| GGAGGAGAAAGTCTAAGGTT+TGG | 0.472150 | 8_1:-414609 | Msa1170990:CDS |
| AATCTTGAAGAACAGAATCA+AGG | 0.481363 | 8_1:+415189 | None:intergenic |
| ATTGTTGGATCTGTGGTTGG+TGG | 0.482657 | 8_1:-414583 | Msa1170990:CDS |
| CCAAAGCACCATTAGCAATT+GGG | 0.487031 | 8_1:-414429 | Msa1170990:CDS |
| GCTGCTGCTGTTGGTAAAGG+TGG | 0.491153 | 8_1:-414631 | Msa1170990:CDS |
| TATTGGTTGTTAGATTGGTA+AGG | 0.493756 | 8_1:-414534 | Msa1170990:CDS |
| GATGTGAAATCAGCACCTTA+TGG | 0.496310 | 8_1:-414802 | Msa1170990:CDS |
| ACAGCAGCAGGCGCCGGTGT+CGG | 0.498680 | 8_1:+414655 | None:intergenic |
| AATACAAGCCTTTCCACATA+AGG | 0.501306 | 8_1:+414996 | None:intergenic |
| ATAATTGTTGGATCTGTGGT+TGG | 0.520856 | 8_1:-414586 | Msa1170990:CDS |
| TTGGATAATTGTTGGATCTG+TGG | 0.525852 | 8_1:-414590 | Msa1170990:CDS |
| AGTGGTAGTTTAAGAACAAG+AGG | 0.528131 | 8_1:-415065 | Msa1170990:CDS |
| GTGTCAAAGTTTCAGCATTG+AGG | 0.541279 | 8_1:-415094 | Msa1170990:CDS |
| TGTTGTTGAACAGCCTTATG+TGG | 0.542621 | 8_1:-415009 | Msa1170990:CDS |
| CTGCTGCTGTTGGTAAAGGT+GGG | 0.546962 | 8_1:-414630 | Msa1170990:CDS |
| TGAAGATACAGGAATTGGAA+TGG | 0.550227 | 8_1:-414498 | Msa1170990:CDS |
| ATCTTGAAGAACAGAATCAA+GGG | 0.551423 | 8_1:+415190 | None:intergenic |
| TTGAACAGCCTTATGTGGAA+AGG | 0.551692 | 8_1:-415004 | Msa1170990:CDS |
| TTTGCAGATGAAATCTATTG+GGG | 0.555209 | 8_1:-414455 | Msa1170990:CDS |
| GCTCAGATTCCATTTGATGA+CGG | 0.578562 | 8_1:-415227 | Msa1170990:CDS |
| CGAGTCTAATGCACCGACAC+CGG | 0.583880 | 8_1:-414668 | Msa1170990:CDS |
| CATTTAGGTACTGAACCATA+AGG | 0.585743 | 8_1:+414787 | None:intergenic |
| GTGTGTTCAACTATGGAACA+AGG | 0.604141 | 8_1:-414709 | Msa1170990:CDS |
| ATGGCAATGTGAAAATTGCA+AGG | 0.609309 | 8_1:+415279 | None:intergenic |
| GGCTGTTCAACAACACCAGG+TGG | 0.614407 | 8_1:+415017 | None:intergenic |
| AATGACAGTGAAAGAAACAA+TGG | 0.614857 | 8_1:+415260 | None:intergenic |
| CTGCTGTTGGTAAAGGTGGG+AGG | 0.618044 | 8_1:-414627 | Msa1170990:CDS |
| TAAGGCTGTTCAACAACACC+AGG | 0.642490 | 8_1:+415014 | None:intergenic |
| AAAGAGTTTCAGATCCCACC+TGG | 0.650705 | 8_1:-415032 | Msa1170990:CDS |
| TCAGCATTGAGGCTTAGAAG+TGG | 0.655725 | 8_1:-415083 | Msa1170990:CDS |
| TGTGTTCAACTATGGAACAA+GGG | 0.692925 | 8_1:-414708 | Msa1170990:CDS |
| GCTGTTCAACAACACCAGGT+GGG | 0.697640 | 8_1:+415018 | None:intergenic |
| TTGCAGATGAAATCTATTGG+GGG | 0.701902 | 8_1:-414454 | Msa1170990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | GATTTGCCTAATAGTATAAT+AGG | - | chr8_1:414570-414589 | Msa1170990:CDS | 25.0% |
| ! | TTGACACCTATTATACTATT+AGG | + | chr8_1:414579-414598 | None:intergenic | 25.0% |
| !!! | GTATTGGTTTACCATAATTT+AGG | - | chr8_1:414708-414727 | Msa1170990:CDS | 25.0% |
| ! | CAGACAAATTTCCTAAATTA+TGG | + | chr8_1:414722-414741 | None:intergenic | 25.0% |
| ! | AATATGTATAACCAGGTAAA+GGG | + | chr8_1:414755-414774 | None:intergenic | 25.0% |
| ! | AAATATGTATAACCAGGTAA+AGG | + | chr8_1:414756-414775 | None:intergenic | 25.0% |
| ! | TCATGAAACTTAACCAAAAT+TGG | + | chr8_1:414866-414885 | None:intergenic | 25.0% |
| ! | GTTGATTATGTTGAGTTTAT+TGG | - | chr8_1:415135-415154 | Msa1170990:CDS | 25.0% |
| ! | ATGTAATCATTCTCTATTGT+TGG | + | chr8_1:415295-415314 | None:intergenic | 25.0% |
| ! | GATTTGCCTAATAGTATAAT+AGG | - | chr8_1:414570-414589 | Msa1170990:CDS | 25.0% |
| ! | TTGACACCTATTATACTATT+AGG | + | chr8_1:414579-414598 | None:intergenic | 25.0% |
| !!! | GTATTGGTTTACCATAATTT+AGG | - | chr8_1:414708-414727 | Msa1170990:CDS | 25.0% |
| ! | CAGACAAATTTCCTAAATTA+TGG | + | chr8_1:414722-414741 | None:intergenic | 25.0% |
| ! | AATATGTATAACCAGGTAAA+GGG | + | chr8_1:414755-414774 | None:intergenic | 25.0% |
| ! | AAATATGTATAACCAGGTAA+AGG | + | chr8_1:414756-414775 | None:intergenic | 25.0% |
| ! | TCATGAAACTTAACCAAAAT+TGG | + | chr8_1:414866-414885 | None:intergenic | 25.0% |
| ! | GTTGATTATGTTGAGTTTAT+TGG | - | chr8_1:415135-415154 | Msa1170990:CDS | 25.0% |
| ! | ATGTAATCATTCTCTATTGT+TGG | + | chr8_1:415295-415314 | None:intergenic | 25.0% |
| AATGACAGTGAAAGAAACAA+TGG | + | chr8_1:414429-414448 | None:intergenic | 30.0% | |
| ATCTTGAAGAACAGAATCAA+GGG | + | chr8_1:414499-414518 | None:intergenic | 30.0% | |
| AATCTTGAAGAACAGAATCA+AGG | + | chr8_1:414500-414519 | None:intergenic | 30.0% | |
| TCTTCAAGATTATGCCTTTA+AGG | - | chr8_1:414509-414528 | Msa1170990:CDS | 30.0% | |
| ! | TCATAAACTACACCAGTTTT+TGG | + | chr8_1:414546-414565 | None:intergenic | 30.0% |
| !! | TACATATTTAGCTCCTGTTT+TGG | - | chr8_1:414767-414786 | Msa1170990:CDS | 30.0% |
| !! | ACATATTTAGCTCCTGTTTT+GGG | - | chr8_1:414768-414787 | Msa1170990:CDS | 30.0% |
| ! | AGCTTCTGATAAACCAATTT+TGG | - | chr8_1:414850-414869 | Msa1170990:CDS | 30.0% |
| AGATCAAAATACACGCATTT+AGG | + | chr8_1:414917-414936 | None:intergenic | 30.0% | |
| !!! | GTATTTTGATCTACATGGTT+CGG | - | chr8_1:414925-414944 | Msa1170990:intron | 30.0% |
| ATAGTTGAACACACATTATC+AGG | + | chr8_1:414971-414990 | None:intergenic | 30.0% | |
| ! | TGATAATGTGTGTTCAACTA+TGG | - | chr8_1:414970-414989 | Msa1170990:intron | 30.0% |
| ! | TCTAAGGTTTGGATAATTGT+TGG | - | chr8_1:415088-415107 | Msa1170990:CDS | 30.0% |
| ! | GAGTTTATTGGTTGTTAGAT+TGG | - | chr8_1:415147-415166 | Msa1170990:CDS | 30.0% |
| ! | TATTGGTTGTTAGATTGGTA+AGG | - | chr8_1:415152-415171 | Msa1170990:CDS | 30.0% |
| AGATTGGTAAGGATCAAAAA+AGG | - | chr8_1:415163-415182 | Msa1170990:CDS | 30.0% | |
| GATTGGTAAGGATCAAAAAA+GGG | - | chr8_1:415164-415183 | Msa1170990:CDS | 30.0% | |
| ACTTTGCAGATGAAATCTAT+TGG | - | chr8_1:415229-415248 | Msa1170990:CDS | 30.0% | |
| CTTTGCAGATGAAATCTATT+GGG | - | chr8_1:415230-415249 | Msa1170990:CDS | 30.0% | |
| TTTGCAGATGAAATCTATTG+GGG | - | chr8_1:415231-415250 | Msa1170990:CDS | 30.0% | |
| AATGACAGTGAAAGAAACAA+TGG | + | chr8_1:414429-414448 | None:intergenic | 30.0% | |
| ATCTTGAAGAACAGAATCAA+GGG | + | chr8_1:414499-414518 | None:intergenic | 30.0% | |
| AATCTTGAAGAACAGAATCA+AGG | + | chr8_1:414500-414519 | None:intergenic | 30.0% | |
| TCTTCAAGATTATGCCTTTA+AGG | - | chr8_1:414509-414528 | Msa1170990:CDS | 30.0% | |
| ! | TCATAAACTACACCAGTTTT+TGG | + | chr8_1:414546-414565 | None:intergenic | 30.0% |
| !! | TACATATTTAGCTCCTGTTT+TGG | - | chr8_1:414767-414786 | Msa1170990:CDS | 30.0% |
| !! | ACATATTTAGCTCCTGTTTT+GGG | - | chr8_1:414768-414787 | Msa1170990:CDS | 30.0% |
| ! | AGCTTCTGATAAACCAATTT+TGG | - | chr8_1:414850-414869 | Msa1170990:CDS | 30.0% |
| AGATCAAAATACACGCATTT+AGG | + | chr8_1:414917-414936 | None:intergenic | 30.0% | |
| !!! | GTATTTTGATCTACATGGTT+CGG | - | chr8_1:414925-414944 | Msa1170990:intron | 30.0% |
| ATAGTTGAACACACATTATC+AGG | + | chr8_1:414971-414990 | None:intergenic | 30.0% | |
| ! | TGATAATGTGTGTTCAACTA+TGG | - | chr8_1:414970-414989 | Msa1170990:intron | 30.0% |
| ! | TCTAAGGTTTGGATAATTGT+TGG | - | chr8_1:415088-415107 | Msa1170990:CDS | 30.0% |
| ! | GAGTTTATTGGTTGTTAGAT+TGG | - | chr8_1:415147-415166 | Msa1170990:CDS | 30.0% |
| ! | TATTGGTTGTTAGATTGGTA+AGG | - | chr8_1:415152-415171 | Msa1170990:CDS | 30.0% |
| AGATTGGTAAGGATCAAAAA+AGG | - | chr8_1:415163-415182 | Msa1170990:CDS | 30.0% | |
| GATTGGTAAGGATCAAAAAA+GGG | - | chr8_1:415164-415183 | Msa1170990:CDS | 30.0% | |
| ACTTTGCAGATGAAATCTAT+TGG | - | chr8_1:415229-415248 | Msa1170990:CDS | 30.0% | |
| CTTTGCAGATGAAATCTATT+GGG | - | chr8_1:415230-415249 | Msa1170990:CDS | 30.0% | |
| TTTGCAGATGAAATCTATTG+GGG | - | chr8_1:415231-415250 | Msa1170990:CDS | 30.0% | |
| ATGGCAATGTGAAAATTGCA+AGG | + | chr8_1:414410-414429 | None:intergenic | 35.0% | |
| GATGAAATACCGTCATCAAA+TGG | + | chr8_1:414471-414490 | None:intergenic | 35.0% | |
| AGTGGTAGTTTAAGAACAAG+AGG | - | chr8_1:414621-414640 | Msa1170990:CDS | 35.0% | |
| AATACAAGCCTTTCCACATA+AGG | + | chr8_1:414693-414712 | None:intergenic | 35.0% | |
| TTATGTGGAAAGGCTTGTAT+TGG | - | chr8_1:414692-414711 | Msa1170990:CDS | 35.0% | |
| ! | GAACATTTTTACCCTTTACC+TGG | - | chr8_1:414741-414760 | Msa1170990:CDS | 35.0% |
| GGAGCTAAATATGTATAACC+AGG | + | chr8_1:414762-414781 | None:intergenic | 35.0% | |
| TATGACAATAGACCCAAAAC+AGG | + | chr8_1:414783-414802 | None:intergenic | 35.0% | |
| TTGGGTCTATTGTCATATAG+TGG | - | chr8_1:414786-414805 | Msa1170990:CDS | 35.0% | |
| TGGGTCTATTGTCATATAGT+GGG | - | chr8_1:414787-414806 | Msa1170990:CDS | 35.0% | |
| TGCTAATGAGTTACCTGAAT+TGG | - | chr8_1:414820-414839 | Msa1170990:CDS | 35.0% | |
| !! | CATTTAGGTACTGAACCATA+AGG | + | chr8_1:414902-414921 | None:intergenic | 35.0% |
| !!! | TGCGTGTATTTTGATCTACA+TGG | - | chr8_1:414920-414939 | Msa1170990:intron | 35.0% |
| TGTGTTCAACTATGGAACAA+GGG | - | chr8_1:414978-414997 | Msa1170990:intron | 35.0% | |
| TTGGATAATTGTTGGATCTG+TGG | - | chr8_1:415096-415115 | Msa1170990:CDS | 35.0% | |
| ATAATTGTTGGATCTGTGGT+TGG | - | chr8_1:415100-415119 | Msa1170990:CDS | 35.0% | |
| CAAAAAAGGGATGAAGATAC+AGG | - | chr8_1:415177-415196 | Msa1170990:CDS | 35.0% | |
| TGAAGATACAGGAATTGGAA+TGG | - | chr8_1:415188-415207 | Msa1170990:CDS | 35.0% | |
| TTGCAGATGAAATCTATTGG+GGG | - | chr8_1:415232-415251 | Msa1170990:CDS | 35.0% | |
| ATGGCAATGTGAAAATTGCA+AGG | + | chr8_1:414410-414429 | None:intergenic | 35.0% | |
| GATGAAATACCGTCATCAAA+TGG | + | chr8_1:414471-414490 | None:intergenic | 35.0% | |
| AGTGGTAGTTTAAGAACAAG+AGG | - | chr8_1:414621-414640 | Msa1170990:CDS | 35.0% | |
| AATACAAGCCTTTCCACATA+AGG | + | chr8_1:414693-414712 | None:intergenic | 35.0% | |
| TTATGTGGAAAGGCTTGTAT+TGG | - | chr8_1:414692-414711 | Msa1170990:CDS | 35.0% | |
| ! | GAACATTTTTACCCTTTACC+TGG | - | chr8_1:414741-414760 | Msa1170990:CDS | 35.0% |
| GGAGCTAAATATGTATAACC+AGG | + | chr8_1:414762-414781 | None:intergenic | 35.0% | |
| TATGACAATAGACCCAAAAC+AGG | + | chr8_1:414783-414802 | None:intergenic | 35.0% | |
| TTGGGTCTATTGTCATATAG+TGG | - | chr8_1:414786-414805 | Msa1170990:CDS | 35.0% | |
| TGGGTCTATTGTCATATAGT+GGG | - | chr8_1:414787-414806 | Msa1170990:CDS | 35.0% | |
| TGCTAATGAGTTACCTGAAT+TGG | - | chr8_1:414820-414839 | Msa1170990:CDS | 35.0% | |
| !! | CATTTAGGTACTGAACCATA+AGG | + | chr8_1:414902-414921 | None:intergenic | 35.0% |
| !!! | TGCGTGTATTTTGATCTACA+TGG | - | chr8_1:414920-414939 | Msa1170990:intron | 35.0% |
| TGTGTTCAACTATGGAACAA+GGG | - | chr8_1:414978-414997 | Msa1170990:intron | 35.0% | |
| TTGGATAATTGTTGGATCTG+TGG | - | chr8_1:415096-415115 | Msa1170990:CDS | 35.0% | |
| ATAATTGTTGGATCTGTGGT+TGG | - | chr8_1:415100-415119 | Msa1170990:CDS | 35.0% | |
| CAAAAAAGGGATGAAGATAC+AGG | - | chr8_1:415177-415196 | Msa1170990:CDS | 35.0% | |
| TGAAGATACAGGAATTGGAA+TGG | - | chr8_1:415188-415207 | Msa1170990:CDS | 35.0% | |
| TTGCAGATGAAATCTATTGG+GGG | - | chr8_1:415232-415251 | Msa1170990:CDS | 35.0% | |
| GCTCAGATTCCATTTGATGA+CGG | - | chr8_1:414459-414478 | Msa1170990:CDS | 40.0% | |
| TGGCTTAACAAGAGCCTTAA+AGG | + | chr8_1:414526-414545 | None:intergenic | 40.0% | |
| GCTCTTGTTAAGCCAAAAAC+TGG | - | chr8_1:414531-414550 | Msa1170990:CDS | 40.0% | |
| GTGTCAAAGTTTCAGCATTG+AGG | - | chr8_1:414592-414611 | Msa1170990:CDS | 40.0% | |
| ! | TGTTGTTGAACAGCCTTATG+TGG | - | chr8_1:414677-414696 | Msa1170990:CDS | 40.0% |
| ! | TTGAACAGCCTTATGTGGAA+AGG | - | chr8_1:414682-414701 | Msa1170990:CDS | 40.0% |
| GAAGCTCTTACATCCAATTC+AGG | + | chr8_1:414836-414855 | None:intergenic | 40.0% | |
| GATGTGAAATCAGCACCTTA+TGG | - | chr8_1:414884-414903 | Msa1170990:intron | 40.0% | |
| GTGTGTTCAACTATGGAACA+AGG | - | chr8_1:414977-414996 | Msa1170990:intron | 40.0% | |
| AGGGATGAAGATACAGGAAT+TGG | - | chr8_1:415183-415202 | Msa1170990:CDS | 40.0% | |
| ! | ACCAAAGCACCATTAGCAAT+TGG | - | chr8_1:415256-415275 | Msa1170990:CDS | 40.0% |
| ! | CCAAAGCACCATTAGCAATT+GGG | - | chr8_1:415257-415276 | Msa1170990:CDS | 40.0% |
| GTTCTAGTCCCAATTGCTAA+TGG | + | chr8_1:415268-415287 | None:intergenic | 40.0% | |
| GCTCAGATTCCATTTGATGA+CGG | - | chr8_1:414459-414478 | Msa1170990:CDS | 40.0% | |
| TGGCTTAACAAGAGCCTTAA+AGG | + | chr8_1:414526-414545 | None:intergenic | 40.0% | |
| GCTCTTGTTAAGCCAAAAAC+TGG | - | chr8_1:414531-414550 | Msa1170990:CDS | 40.0% | |
| GTGTCAAAGTTTCAGCATTG+AGG | - | chr8_1:414592-414611 | Msa1170990:CDS | 40.0% | |
| ! | TGTTGTTGAACAGCCTTATG+TGG | - | chr8_1:414677-414696 | Msa1170990:CDS | 40.0% |
| ! | TTGAACAGCCTTATGTGGAA+AGG | - | chr8_1:414682-414701 | Msa1170990:CDS | 40.0% |
| GAAGCTCTTACATCCAATTC+AGG | + | chr8_1:414836-414855 | None:intergenic | 40.0% | |
| GATGTGAAATCAGCACCTTA+TGG | - | chr8_1:414884-414903 | Msa1170990:intron | 40.0% | |
| GTGTGTTCAACTATGGAACA+AGG | - | chr8_1:414977-414996 | Msa1170990:intron | 40.0% | |
| AGGGATGAAGATACAGGAAT+TGG | - | chr8_1:415183-415202 | Msa1170990:CDS | 40.0% | |
| ! | ACCAAAGCACCATTAGCAAT+TGG | - | chr8_1:415256-415275 | Msa1170990:CDS | 40.0% |
| ! | CCAAAGCACCATTAGCAATT+GGG | - | chr8_1:415257-415276 | Msa1170990:CDS | 40.0% |
| GTTCTAGTCCCAATTGCTAA+TGG | + | chr8_1:415268-415287 | None:intergenic | 40.0% | |
| ! | TCAGCATTGAGGCTTAGAAG+TGG | - | chr8_1:414603-414622 | Msa1170990:CDS | 45.0% |
| AAAGAGTTTCAGATCCCACC+TGG | - | chr8_1:414654-414673 | Msa1170990:CDS | 45.0% | |
| TAAGGCTGTTCAACAACACC+AGG | + | chr8_1:414675-414694 | None:intergenic | 45.0% | |
| ! | GGAGGAGAAAGTCTAAGGTT+TGG | - | chr8_1:415077-415096 | Msa1170990:CDS | 45.0% |
| ATTGTTGGATCTGTGGTTGG+TGG | - | chr8_1:415103-415122 | Msa1170990:CDS | 45.0% | |
| CCCAATTGCTAATGGTGCTT+TGG | + | chr8_1:415260-415279 | None:intergenic | 45.0% | |
| ! | TCAGCATTGAGGCTTAGAAG+TGG | - | chr8_1:414603-414622 | Msa1170990:CDS | 45.0% |
| AAAGAGTTTCAGATCCCACC+TGG | - | chr8_1:414654-414673 | Msa1170990:CDS | 45.0% | |
| TAAGGCTGTTCAACAACACC+AGG | + | chr8_1:414675-414694 | None:intergenic | 45.0% | |
| ! | GGAGGAGAAAGTCTAAGGTT+TGG | - | chr8_1:415077-415096 | Msa1170990:CDS | 45.0% |
| ATTGTTGGATCTGTGGTTGG+TGG | - | chr8_1:415103-415122 | Msa1170990:CDS | 45.0% | |
| CCCAATTGCTAATGGTGCTT+TGG | + | chr8_1:415260-415279 | None:intergenic | 45.0% | |
| GCTGTTCAACAACACCAGGT+GGG | + | chr8_1:414671-414690 | None:intergenic | 50.0% | |
| ! | GTTGCTGCTGCTGTTGGTAA+AGG | - | chr8_1:415052-415071 | Msa1170990:CDS | 50.0% |
| ! | CTGCTGCTGTTGGTAAAGGT+GGG | - | chr8_1:415056-415075 | Msa1170990:CDS | 50.0% |
| AGGTGGGAGGAGAAAGTCTA+AGG | - | chr8_1:415072-415091 | Msa1170990:CDS | 50.0% | |
| GCTGTTCAACAACACCAGGT+GGG | + | chr8_1:414671-414690 | None:intergenic | 50.0% | |
| ! | GTTGCTGCTGCTGTTGGTAA+AGG | - | chr8_1:415052-415071 | Msa1170990:CDS | 50.0% |
| ! | CTGCTGCTGTTGGTAAAGGT+GGG | - | chr8_1:415056-415075 | Msa1170990:CDS | 50.0% |
| AGGTGGGAGGAGAAAGTCTA+AGG | - | chr8_1:415072-415091 | Msa1170990:CDS | 50.0% | |
| GGCTGTTCAACAACACCAGG+TGG | + | chr8_1:414672-414691 | None:intergenic | 55.0% | |
| ! | CGAGTCTAATGCACCGACAC+CGG | - | chr8_1:415018-415037 | Msa1170990:CDS | 55.0% |
| ! | GCTGCTGCTGTTGGTAAAGG+TGG | - | chr8_1:415055-415074 | Msa1170990:CDS | 55.0% |
| ! | CTGCTGTTGGTAAAGGTGGG+AGG | - | chr8_1:415059-415078 | Msa1170990:CDS | 55.0% |
| GGCTGTTCAACAACACCAGG+TGG | + | chr8_1:414672-414691 | None:intergenic | 55.0% | |
| ! | CGAGTCTAATGCACCGACAC+CGG | - | chr8_1:415018-415037 | Msa1170990:CDS | 55.0% |
| ! | GCTGCTGCTGTTGGTAAAGG+TGG | - | chr8_1:415055-415074 | Msa1170990:CDS | 55.0% |
| ! | CTGCTGTTGGTAAAGGTGGG+AGG | - | chr8_1:415059-415078 | Msa1170990:CDS | 55.0% |
| ACAGCAGCAGCAACAGCAGC+AGG | + | chr8_1:415046-415065 | None:intergenic | 60.0% | |
| GCTGCTGTTGCTGCTGCTGT+TGG | - | chr8_1:415046-415065 | Msa1170990:CDS | 60.0% | |
| ACAGCAGCAGCAACAGCAGC+AGG | + | chr8_1:415046-415065 | None:intergenic | 60.0% | |
| GCTGCTGTTGCTGCTGCTGT+TGG | - | chr8_1:415046-415065 | Msa1170990:CDS | 60.0% | |
| !! | ACAGCAGCAGGCGCCGGTGT+CGG | + | chr8_1:415034-415053 | None:intergenic | 70.0% |
| GCAGCAACAGCAGCAGGCGC+CGG | + | chr8_1:415040-415059 | None:intergenic | 70.0% | |
| !! | ACAGCAGCAGGCGCCGGTGT+CGG | + | chr8_1:415034-415053 | None:intergenic | 70.0% |
| GCAGCAACAGCAGCAGGCGC+CGG | + | chr8_1:415040-415059 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 414387 | 415321 | 414387 | ID=Msa1170990;Name=Msa1170990 |
| chr8_1 | mRNA | 414387 | 415321 | 414387 | ID=Msa1170990-mRNA-1;Parent=Msa1170990;Name=Msa1170990-mRNA-1;_AED=0.05;_eAED=0.07;_QI=0|0|0|1|1|1|2|0|278 |
| chr8_1 | exon | 415001 | 415321 | 415001 | ID=Msa1170990-mRNA-1:exon:117;Parent=Msa1170990-mRNA-1 |
| chr8_1 | exon | 414387 | 414902 | 414387 | ID=Msa1170990-mRNA-1:exon:116;Parent=Msa1170990-mRNA-1 |
| chr8_1 | CDS | 415001 | 415321 | 415001 | ID=Msa1170990-mRNA-1:cds;Parent=Msa1170990-mRNA-1 |
| chr8_1 | CDS | 414387 | 414902 | 414387 | ID=Msa1170990-mRNA-1:cds;Parent=Msa1170990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
