AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1450910

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450910 MtrunA17_Chr2g0317511 98.142 592 11 0 1 592 1 592 0.0 1200
Msa1450910 MtrunA17_Chr4g0047251 55.835 557 212 10 39 589 1 529 0.0 597
Msa1450910 MtrunA17_Chr2g0282261 56.075 535 207 12 1 532 1 510 0.0 570
Msa1450910 MtrunA17_Chr8g0361841 46.815 314 153 8 227 533 161 467 7.46e-82 265
Msa1450910 MtrunA17_Chr8g0378731 38.968 349 196 8 181 524 114 450 4.54e-77 253
Msa1450910 MtrunA17_Chr1g0200501 46.885 305 151 7 227 523 395 696 2.44e-76 256
Msa1450910 MtrunA17_Chr1g0154411 40.066 302 159 8 227 522 175 460 4.60e-55 193
Msa1450910 MtrunA17_Chr2g0285981 34.722 288 171 7 227 508 117 393 2.90e-45 166
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1450910 AT1G53040.2 59.325 563 179 13 38 581 2 533 0.0 599
Msa1450910 AT1G53040.1 59.325 563 179 13 38 581 2 533 0.0 599
Msa1450910 AT1G53040.6 59.325 563 179 13 38 581 2 533 0.0 599
Msa1450910 AT1G28240.1 56.818 528 204 10 1 523 1 509 0.0 587
Msa1450910 AT1G53040.3 61.723 499 155 8 38 520 2 480 0.0 580
Msa1450910 AT1G53040.4 61.723 499 155 8 38 520 2 480 0.0 580
Msa1450910 AT1G53040.5 57.773 431 146 8 38 452 2 412 1.04e-154 451
Msa1450910 AT2G02910.2 40.633 379 188 12 169 534 105 459 1.11e-80 261
Msa1450910 AT2G02910.1 40.633 379 188 12 169 534 105 459 1.11e-80 261
Msa1450910 AT4G09630.2 39.862 434 222 14 108 523 270 682 1.27e-80 268
Msa1450910 AT4G09630.1 39.862 434 222 14 108 523 285 697 3.11e-80 267
Msa1450910 AT1G34550.2 46.580 307 149 8 227 523 327 628 1.13e-78 261
Msa1450910 AT1G34550.1 46.580 307 149 8 227 523 421 722 4.70e-78 262
Msa1450910 AT4G38500.1 41.349 341 180 10 178 512 107 433 1.12e-71 239
Msa1450910 AT5G42660.1 39.262 298 167 7 227 522 168 453 8.25e-61 209
Msa1450910 AT5G46220.1 36.396 283 162 8 227 501 118 390 1.07e-43 162

Find 200 sgRNAs with CRISPR-Local

Find 443 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAGTATCAATATGTTTC+TGG 0.151283 tig0033146:-3700 Msa1450910:CDS
CCAACATCCGATATTCAATT+TGG 0.161998 tig0033146:-5258 Msa1450910:CDS
TATGAGAAATGCCAGTATTT+TGG 0.170087 tig0033146:-5580 Msa1450910:CDS
CAACTCCTCTCTTTCTCTTT+GGG 0.171333 tig0033146:+8257 Msa1450910:intergenic
ATCAAGACTAAAATAAAATT+TGG 0.222129 tig0033146:+2805 Msa1450910:intergenic
GCAGGAGGAGAGTTGGATTA+TGG 0.230597 tig0033146:-5554 Msa1450910:CDS
ACAACTCCTCTCTTTCTCTT+TGG 0.232114 tig0033146:+8256 Msa1450910:intergenic
CCAGAGGGCGGCTCTGATTT+TGG 0.239298 tig0033146:-6331 Msa1450910:CDS
CAAATCTGTTTACCTGCTTA+TGG 0.239991 tig0033146:-3803 Msa1450910:CDS
ATCAACGCCTATAACTTTAT+AGG 0.256052 tig0033146:+6865 Msa1450910:intergenic
TACCTTTCAAGAATTTGATA+TGG 0.259862 tig0033146:+5205 Msa1450910:intergenic
CTTAGTACCTATAAAGTTAT+AGG 0.264807 tig0033146:-6872 Msa1450910:CDS
ATTGTTGCATCTGCCATATT+TGG 0.266284 tig0033146:-5782 Msa1450910:intron
ATTCTGTGCAAAAGAAGTTT+TGG 0.269371 tig0033146:+5286 Msa1450910:intergenic
ATTTACAATTAAAACATAAA+AGG 0.286362 tig0033146:+2659 Msa1450910:intergenic
ATATTCCATACGCTGATTCT+AGG 0.289829 tig0033146:-5512 Msa1450910:CDS
TTGTTCTTACCACTAGTTAT+AGG 0.290716 tig0033146:+3979 Msa1450910:intergenic
ACTCTTGACAGATTTGTAAA+AGG 0.291042 tig0033146:-5881 Msa1450910:intron
AACAATAGAAACTAAGTTAA+AGG 0.297917 tig0033146:-6840 Msa1450910:CDS
GTCATAAATTGTACCAAATA+TGG 0.301494 tig0033146:+5769 Msa1450910:intergenic
CAGAGGCTTGTTAGTAGTAT+AGG 0.308587 tig0033146:+2914 Msa1450910:intergenic
TGCTTGTTTACTGATGTTCC+TGG 0.308633 tig0033146:+5653 Msa1450910:intergenic
AATCAGAGAATTGGGGAATT+GGG 0.313602 tig0033146:+8779 Msa1450910:intergenic
TGTTACAGTGGTGGGTTTGA+TGG 0.316135 tig0033146:-8433 Msa1450910:five_prime_UTR
CAGGTAAACAGATTTGTAAT+TGG 0.326045 tig0033146:+3810 Msa1450910:intergenic
CGATATTCAATTTGGATTGA+TGG 0.327205 tig0033146:-5250 Msa1450910:CDS
CTTTCTCTTTGGGGTTATAA+AGG 0.333461 tig0033146:+8267 Msa1450910:intergenic
GAAATGGCAAAAGTAGCATT+TGG 0.334302 tig0033146:+4144 Msa1450910:intergenic
TTGAAATCAAATGTAGCTTC+TGG 0.336024 tig0033146:-8591 Msa1450910:five_prime_UTR
GAATCAGAGAATTGGGGAAT+TGG 0.340394 tig0033146:+8778 Msa1450910:intergenic
CGGTAACGTTTCGCAGGTTC+CGG 0.346495 tig0033146:-8318 Msa1450910:CDS
GGGAAACCCACGAATGATTT+CGG 0.350801 tig0033146:+8624 Msa1450910:intergenic
ATGGTTTAACTCATTATTCC+AGG 0.351362 tig0033146:-4011 Msa1450910:CDS
CAAATTGAATATCGGATGTT+GGG 0.357092 tig0033146:+5259 Msa1450910:intergenic
AATCGGAGAATCAGAGAATT+GGG 0.364490 tig0033146:+8771 Msa1450910:intergenic
GAATCGGAGAATCAGAGAAT+TGG 0.373549 tig0033146:+8770 Msa1450910:intergenic
CTCGTCCAGTTGTTGTAATT+CGG 0.377263 tig0033146:-2959 Msa1450910:CDS
ATGCTTCTCATGCTTCTTTG+TGG 0.378030 tig0033146:-8194 Msa1450910:CDS
TAACCCACAATGCACTTTCA+TGG 0.381800 tig0033146:+6258 Msa1450910:intergenic
AGAGATGACTGGAGTGTCAT+TGG 0.383636 tig0033146:-8384 Msa1450910:exon
AGCAGACCTGGGCGCCAGAC+TGG 0.385517 tig0033146:-5857 Msa1450910:CDS
ACCTTTCAAGAATTTGATAT+GGG 0.390461 tig0033146:+5206 Msa1450910:intergenic
AATTATATGAAGATCGTAAA+GGG 0.390591 tig0033146:+6753 Msa1450910:intergenic
TCGTGTATCTTCAATTTCAT+TGG 0.390782 tig0033146:+6904 Msa1450910:intergenic
GCAGAGGCTAATAAAGTTGC+TGG 0.394494 tig0033146:-4087 Msa1450910:CDS
CATCAATCCAAATTGAATAT+CGG 0.397863 tig0033146:+5251 Msa1450910:intergenic
GAAGATCGTAAAGGGGAAAC+AGG 0.398793 tig0033146:+6761 Msa1450910:intergenic
TGTTCTCCAATACGTCTCTA+TGG 0.400680 tig0033146:+3006 Msa1450910:intergenic
TTGTATATTTGTCGTCATCT+TGG 0.402404 tig0033146:-8233 Msa1450910:CDS
CGAGGACGAGGAGGAGGAGG+AGG 0.402584 tig0033146:+2978 Msa1450910:intergenic
GGACGCCGAATTACAACAAC+TGG 0.408307 tig0033146:+2954 Msa1450910:intergenic
AGTGGGTCCCACTGAGACTC+CGG 0.417933 tig0033146:+8698 Msa1450910:intergenic
AGAGGCTTGTTAGTAGTATA+GGG 0.418244 tig0033146:+2915 Msa1450910:intergenic
TATAAAGTTATAGGCGTTGA+TGG 0.419422 tig0033146:-6863 Msa1450910:CDS
TGCATTTCCTCCTCCTCCAC+CGG 0.419731 tig0033146:-6678 Msa1450910:CDS
TGAAATCAAATGTAGCTTCT+GGG 0.422798 tig0033146:-8590 Msa1450910:five_prime_UTR
AATCAGCGTATGGAATATTC+CGG 0.426989 tig0033146:+5517 Msa1450910:intergenic
ACAAAACTTACGGCGTGGTC+CGG 0.429802 tig0033146:+6640 Msa1450910:intergenic
GAGGCGTAACTTTGTAATAC+AGG 0.430563 tig0033146:-3670 Msa1450910:intron
CACGGTAAGAGACAAAATAA+TGG 0.431368 tig0033146:-3733 Msa1450910:CDS
GGAGACTCTGATGGGGAACT+TGG 0.434048 tig0033146:+6406 Msa1450910:intergenic
AAATGGCAAAAGTAGCATTT+GGG 0.439586 tig0033146:+4145 Msa1450910:intergenic
CTATAACTTTATAGGTACTA+AGG 0.440362 tig0033146:+6873 Msa1450910:intergenic
CCTCCTGCTATCCAAAATAC+TGG 0.441277 tig0033146:+5569 Msa1450910:intergenic
CTAGGCGCGGGAGAGGAGAT+AGG 0.442545 tig0033146:-2878 Msa1450910:CDS
TCCCACTGAGACTCCGGGGA+AGG 0.446054 tig0033146:+8704 Msa1450910:intergenic
TTGGATAGCAGGAGGAGAGT+TGG 0.453109 tig0033146:-5561 Msa1450910:CDS
CGATCTTCATATAATTTGAA+AGG 0.456833 tig0033146:-6746 Msa1450910:CDS
GCGTCTATAGTGTCTTGAAA+TGG 0.457326 tig0033146:+4128 Msa1450910:intergenic
AAATTGAACTTGGCGATCAA+TGG 0.458082 tig0033146:+4047 Msa1450910:intergenic
AAATAATGGCAAAAGTTGAT+TGG 0.458296 tig0033146:-3719 Msa1450910:CDS
CTAATGATAACACAACCTTC+AGG 0.460865 tig0033146:+3843 Msa1450910:intergenic
CTTCTACGTCGTTGACAAGT+AGG 0.463711 tig0033146:-6808 Msa1450910:CDS
GATACCCTCCTCTGGAAGAA+AGG 0.465155 tig0033146:-6306 Msa1450910:CDS
TATGGAGAATCATTGTTGTC+CGG 0.466157 tig0033146:-5536 Msa1450910:CDS
GGCGTACCATAGAGACGTAT+TGG 0.468562 tig0033146:-3012 Msa1450910:CDS
GTGTCATTGGGTCTACGAAC+AGG 0.469533 tig0033146:-8371 Msa1450910:CDS
CTAGCTATAGCTTGCTCCAC+AGG 0.472659 tig0033146:+6433 Msa1450910:intergenic
TTGATTGTTGTTACAGTGGT+GGG 0.472782 tig0033146:-8441 Msa1450910:five_prime_UTR
GGACGAGGACGAGGAGGAGG+AGG 0.472907 tig0033146:+2975 Msa1450910:intergenic
GGGAGAGGAGATAGGAGATC+AGG 0.476344 tig0033146:-2870 Msa1450910:CDS
GAGGAGGAGGAAATGCAAAA+TGG 0.477057 tig0033146:+6684 Msa1450910:intergenic
CCAAATTGAATATCGGATGT+TGG 0.483520 tig0033146:+5258 Msa1450910:intergenic
ATTTCCTCTTCACCCTTCCC+CGG 0.486772 tig0033146:-8717 Msa1450910:five_prime_UTR
CTTCTATCAGCCGGTGGAGG+AGG 0.487564 tig0033146:+6668 Msa1450910:intergenic
CTATCTCCTCTCCCGCGCCT+AGG 0.488221 tig0033146:+2879 Msa1450910:intergenic
GCTTGTTTACTGATGTTCCT+GGG 0.488794 tig0033146:+5654 Msa1450910:intergenic
AAGAATCCTAGGCGCGGGAG+AGG 0.488826 tig0033146:-2885 Msa1450910:CDS
GAGCCGCCCTCTGGTTCACT+TGG 0.488920 tig0033146:+6340 Msa1450910:intergenic
GGATTGAGGTGTAGCGTGAA+TGG 0.489165 tig0033146:+8842 Msa1450910:intergenic
CTATCAGCCGGTGGAGGAGG+AGG 0.489293 tig0033146:+6671 Msa1450910:intergenic
GTGGGTCCCACTGAGACTCC+GGG 0.490349 tig0033146:+8699 Msa1450910:intergenic
TGAATGGAGGGAAGAGAGAA+TGG 0.492726 tig0033146:+8858 Msa1450910:intergenic
TACGCTGATTCTAGGCGTAA+TGG 0.493420 tig0033146:-5504 Msa1450910:CDS
AGACCATGAAAGTGCATTGT+GGG 0.494240 tig0033146:-6261 Msa1450910:intron
GATATTCAATTTGGATTGAT+GGG 0.495126 tig0033146:-5249 Msa1450910:CDS
CATCAAAATCAAATCCAGTC+TGG 0.495263 tig0033146:+5843 Msa1450910:intergenic
TGATGTCTTTGTCGAGGCAG+AGG 0.497324 tig0033146:-4103 Msa1450910:CDS
GAAATCAATGAACGGAATCT+CGG 0.498803 tig0033146:+8735 Msa1450910:intergenic
GAGATGACTGGAGTGTCATT+GGG 0.500498 tig0033146:-8383 Msa1450910:CDS
TTGTTAGTAGTATAGGGAAC+AGG 0.504095 tig0033146:+2921 Msa1450910:intergenic
AACTCCTCTCTTTCTCTTTG+GGG 0.506867 tig0033146:+8258 Msa1450910:intergenic
CCCACTGAGACTCCGGGGAA+GGG 0.507237 tig0033146:+8705 Msa1450910:intergenic
TTTGTAAAAGGAAGCAGACC+TGG 0.508151 tig0033146:-5869 Msa1450910:CDS
TATGTGAGAGTGCGAAGTAC+AGG 0.510947 tig0033146:+6385 Msa1450910:intergenic
CCCTTCCCCGGAGTCTCAGT+GGG 0.512104 tig0033146:-8705 Msa1450910:five_prime_UTR
CAGATGCAACAATGATATCA+TGG 0.513495 tig0033146:+5792 Msa1450910:intergenic
TGAGGAAGACCTCTTAGAGT+TGG 0.514183 tig0033146:-5822 Msa1450910:CDS
TGGTGGGTTTGATGGTGAAA+AGG 0.518260 tig0033146:-8425 Msa1450910:five_prime_UTR
CCAAAATCAGAGCCGCCCTC+TGG 0.518922 tig0033146:+6331 Msa1450910:intergenic
GGTATTGATAAAATTGAACT+TGG 0.519689 tig0033146:+4037 Msa1450910:intergenic
AGGAAGATGGAAGATGGAGA+TGG 0.519774 tig0033146:+8809 Msa1450910:intergenic
TGGAAACTTGATCGGAAAAG+AGG 0.521482 tig0033146:+8674 Msa1450910:intergenic
TCAAATCCAGTCTGGCGCCC+AGG 0.522524 tig0033146:+5851 Msa1450910:intergenic
ATTGAAAGGAGAGAGATGAC+TGG 0.525842 tig0033146:-8395 Msa1450910:exon
TTATATCATCCAGGTTCTTG+TGG 0.528214 tig0033146:-4170 Msa1450910:intron
ACTGGACGAGGACGAGGAGG+AGG 0.528285 tig0033146:+2972 Msa1450910:intergenic
CTATACTACTAACAAGCCTC+TGG 0.528643 tig0033146:-2913 Msa1450910:CDS
TTTGATTTCAAGCGATGAGA+AGG 0.529884 tig0033146:+8603 Msa1450910:intergenic
TTTGATTGTTGTTACAGTGG+TGG 0.530497 tig0033146:-8442 Msa1450910:five_prime_UTR
CTTGATCGGAAAAGAGGAAG+TGG 0.531481 tig0033146:+8680 Msa1450910:intergenic
AAATTATATGAAGATCGTAA+AGG 0.535453 tig0033146:+6752 Msa1450910:intergenic
ATTTGTCGTCATCTTGGTCG+TGG 0.536035 tig0033146:-8227 Msa1450910:CDS
CGTCTTCTATCAGCCGGTGG+AGG 0.539441 tig0033146:+6665 Msa1450910:intergenic
CTAGGATTCTTCTTCACCAG+AGG 0.540636 tig0033146:+2897 Msa1450910:intergenic
ATGGAGATGGTGATGGATTG+AGG 0.544586 tig0033146:+8828 Msa1450910:intergenic
CGAAGTACAGGAGACTCTGA+TGG 0.547259 tig0033146:+6397 Msa1450910:intergenic
ATGAACGGAATCTCGGCGGT+TGG 0.549569 tig0033146:+8742 Msa1450910:intergenic
TCATCAATGAACATATAGAA+AGG 0.552097 tig0033146:+5618 Msa1450910:intergenic
CTCTGGTGAAGAAGAATCCT+AGG 0.552954 tig0033146:-2896 Msa1450910:CDS
GAAATCAAATGTAGCTTCTG+GGG 0.554318 tig0033146:-8589 Msa1450910:five_prime_UTR
TACAATTAAAACATAAAAGG+AGG 0.554568 tig0033146:+2662 Msa1450910:intergenic
ACCCATATCAAATTCTTGAA+AGG 0.556489 tig0033146:-5207 Msa1450910:intron
GAAGTACAGGAGACTCTGAT+GGG 0.558730 tig0033146:+6398 Msa1450910:intergenic
GGTACTGATCCAACTCTAAG+AGG 0.559165 tig0033146:+5813 Msa1450910:intergenic
GCCTCTGCAGATGTGCCTGA+AGG 0.559588 tig0033146:-3858 Msa1450910:intron
AGTTATAGGAAGCTTAGCCC+TGG 0.559911 tig0033146:+3993 Msa1450910:intergenic
ACAACAACTGGACGAGGACG+AGG 0.562021 tig0033146:+2966 Msa1450910:intergenic
TCAAAACGGTAACGTTTCGC+AGG 0.562363 tig0033146:-8324 Msa1450910:CDS
AACTTCATTGAACCATAAGC+AGG 0.563277 tig0033146:+3791 Msa1450910:intergenic
ATACCCTCCTCTGGAAGAAA+GGG 0.563454 tig0033146:-6305 Msa1450910:CDS
TCTCTGCAGTTGATTCAAAA+CGG 0.563566 tig0033146:-8338 Msa1450910:CDS
GAAAAGGAGATGAAATTGAA+AGG 0.566132 tig0033146:-8409 Msa1450910:five_prime_UTR
CCGGTACGTCTTCTATCAGC+CGG 0.566719 tig0033146:+6659 Msa1450910:intergenic
GATGGAGATGGAGATGGTGA+TGG 0.567870 tig0033146:+8821 Msa1450910:intergenic
ACCCTTCCCCGGAGTCTCAG+TGG 0.569276 tig0033146:-8706 Msa1450910:five_prime_UTR
TGGTTTAACTCATTATTCCA+GGG 0.573563 tig0033146:-4010 Msa1450910:CDS
AAAAGGATCTTCCTCTACTG+TGG 0.574720 tig0033146:-6720 Msa1450910:CDS
TCAAAATCCGAAATCATTCG+TGG 0.576868 tig0033146:-8631 Msa1450910:five_prime_UTR
ATAACCCCAAAGAGAAAGAG+AGG 0.578050 tig0033146:-8262 Msa1450910:CDS
TTGATTTCAAGCGATGAGAA+GGG 0.579782 tig0033146:+8604 Msa1450910:intergenic
TCGGCGGTTGGAGTTCGAAT+CGG 0.580103 tig0033146:+8754 Msa1450910:intergenic
AGATTTGATTGTTGTTACAG+TGG 0.581260 tig0033146:-8445 Msa1450910:five_prime_UTR
GGTCTACGAACAGGTAGCTA+TGG 0.582952 tig0033146:-8362 Msa1450910:CDS
TCCTGTGTGCTATATTCCTG+TGG 0.583338 tig0033146:-6449 Msa1450910:CDS
TGAGGTGTAGCGTGAATGGA+GGG 0.584497 tig0033146:+8846 Msa1450910:intergenic
ATGATGTAATACAGCAGCCC+AGG 0.585632 tig0033146:-5671 Msa1450910:CDS
TGAAGAAGAATCCTAGGCGC+GGG 0.587189 tig0033146:-2890 Msa1450910:CDS
GAAGCTCTACGAACAAGCAC+CGG 0.587738 tig0033146:+8299 Msa1450910:intergenic
CGAATTACAACAACTGGACG+AGG 0.587930 tig0033146:+2960 Msa1450910:intergenic
TGATTCTAGGCGTAATGGAA+AGG 0.589215 tig0033146:-5499 Msa1450910:intron
AAAGGATCTTCCTCTACTGT+GGG 0.590284 tig0033146:-6719 Msa1450910:CDS
TTGAGGTGTAGCGTGAATGG+AGG 0.592594 tig0033146:+8845 Msa1450910:intergenic
GCGTCCCTTTCTTCCAGAGG+AGG 0.594997 tig0033146:+6301 Msa1450910:intergenic
ACAAAGAAGCATGAGAAGCA+TGG 0.596228 tig0033146:+8196 Msa1450910:intergenic
CGTCCCTTTCTTCCAGAGGA+GGG 0.599989 tig0033146:+6302 Msa1450910:intergenic
GAGACCATGAAAGTGCATTG+TGG 0.600387 tig0033146:-6262 Msa1450910:CDS
CAAAATCCGAAATCATTCGT+GGG 0.600820 tig0033146:-8630 Msa1450910:five_prime_UTR
TATAACTTTATAGGTACTAA+GGG 0.601886 tig0033146:+6874 Msa1450910:intergenic
GCTAAGCTTCCTATAACTAG+TGG 0.604377 tig0033146:-3988 Msa1450910:intron
GACTCCGGGGAAGGGTGAAG+AGG 0.604662 tig0033146:+8713 Msa1450910:intergenic
ATGGAAGATGGAGATGGAGA+TGG 0.606674 tig0033146:+8815 Msa1450910:intergenic
ATATGTTTCTGGATTGTGAG+AGG 0.612741 tig0033146:-3689 Msa1450910:CDS
GAAGCGTCCCTTTCTTCCAG+AGG 0.614144 tig0033146:+6298 Msa1450910:intergenic
ACGCTTTGATGTCTTTGTCG+AGG 0.624568 tig0033146:-4109 Msa1450910:CDS
AAATTGAATATCGGATGTTG+GGG 0.626381 tig0033146:+5260 Msa1450910:intergenic
GGCTGCTTTACACTTTACAA+AGG 0.627522 tig0033146:-8152 Msa1450910:intron
ACTGATCTCTAGAAGTAAAG+CGG 0.629422 tig0033146:+3766 Msa1450910:intergenic
TTGTAAAAGGAAGCAGACCT+GGG 0.632901 tig0033146:-5868 Msa1450910:CDS
TTAGTAGTATAGGGAACAGG+TGG 0.633478 tig0033146:+2924 Msa1450910:intergenic
TTACGCCTAGAATCAGCGTA+TGG 0.636495 tig0033146:+5507 Msa1450910:intergenic
ATTATATGAAGATCGTAAAG+GGG 0.638021 tig0033146:+6754 Msa1450910:intergenic
ACACTGATGTCCCACAGTAG+AGG 0.638638 tig0033146:+6709 Msa1450910:intergenic
GGAACATCAGTAAACAAGCA+AGG 0.641755 tig0033146:-5650 Msa1450910:CDS
GTGAAGAAGAATCCTAGGCG+CGG 0.647847 tig0033146:-2891 Msa1450910:CDS
GTGAAGAGGAAATCAATGAA+CGG 0.649413 tig0033146:+8727 Msa1450910:intergenic
TAGGGAACAGGTGGAAGACG+AGG 0.652873 tig0033146:+2933 Msa1450910:intergenic
ATCGGAGAATCAGAGAATTG+GGG 0.655976 tig0033146:+8772 Msa1450910:intergenic
TATGTTTCCAAGTGAACCAG+AGG 0.659114 tig0033146:-6347 Msa1450910:CDS
CCGGCTGATAGAAGACGTAC+CGG 0.661574 tig0033146:-6659 Msa1450910:CDS
TTGATCGGAAAAGAGGAAGT+GGG 0.664244 tig0033146:+8681 Msa1450910:intergenic
GTACGTCTTCTATCAGCCGG+TGG 0.665787 tig0033146:+6662 Msa1450910:intergenic
TTTCCAAGTGAACCAGAGGG+CGG 0.677607 tig0033146:-6343 Msa1450910:CDS
ACAACTGGACGAGGACGAGG+AGG 0.683028 tig0033146:+2969 Msa1450910:intergenic
ATGTTTCCAAGTGAACCAGA+GGG 0.698530 tig0033146:-6346 Msa1450910:CDS
AATAATGAGTTAAACCATCG+TGG 0.700929 tig0033146:+4016 Msa1450900:intergenic
ATCAATGAACGGAATCTCGG+CGG 0.703651 tig0033146:+8738 Msa1450900:intergenic
TGGGTCCCACTGAGACTCCG+GGG 0.710691 tig0033146:+8700 Msa1450900:intergenic
TCCACAGGAATATAGCACAC+AGG 0.715049 tig0033146:+6448 Msa1450900:intergenic
AAGTACAGGAGACTCTGATG+GGG 0.744993 tig0033146:+6399 Msa1450900:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTTATATTAATTTCTAAA+GGG + tig0033146:4404-4423 Msa1450910:intergenic 10.0%
!! TTAGTTATATTAATTTCTAA+AGG + tig0033146:4405-4424 Msa1450910:intergenic 10.0%
!! ATTTACAATTAAAACATAAA+AGG + tig0033146:8878-8897 Msa1450910:intergenic 10.0%
!! TTTCTATCATTAAATCATAT+CGG - tig0033146:3496-3515 Msa1450910:intron 15.0%
!! ATTATATTCATAATTTGATC+TGG + tig0033146:3608-3627 Msa1450910:intergenic 15.0%
!! AGATCAAATTATGAATATAA+TGG - tig0033146:3607-3626 Msa1450910:intron 15.0%
!!! TTAAACTAGTTTTGTAATAT+TGG - tig0033146:4479-4498 Msa1450910:intron 15.0%
!! TATAATTTGAAAGGAAAAAA+AGG - tig0033146:4797-4816 Msa1450910:intron 15.0%
!!! TTTTTAATTTTCTCATAACT+TGG - tig0033146:5317-5336 Msa1450910:intron 15.0%
!!! TTGAAATTTGATAGTATTTT+TGG - tig0033146:6105-6124 Msa1450910:intron 15.0%
!! TGTTTAAAAGTGAAAAAAAA+TGG + tig0033146:7946-7965 Msa1450910:intergenic 15.0%
!!! CTCAATTTTCTAAAAATAAT+TGG - tig0033146:8003-8022 Msa1450910:intron 15.0%
!! AAAAATATAGACTAAAAACA+AGG + tig0033146:8154-8173 Msa1450910:intergenic 15.0%
!! TTAAAAGTGAAAATCAAAAT+TGG - tig0033146:8252-8271 Msa1450910:CDS 15.0%
!!! ATAAAGAATTTTTATGTTGT+TGG - tig0033146:8480-8499 Msa1450910:five_prime_UTR 15.0%
!! ATCAAGACTAAAATAAAATT+TGG + tig0033146:8732-8751 Msa1450910:intergenic 15.0%
!!! TTATTGTTTTCAAGAGATTT+TGG - tig0033146:3060-3079 Msa1450910:intron 20.0%
!! ACAAATCACTATATATAGTA+AGG - tig0033146:3559-3578 Msa1450910:intron 20.0%
!! TTGTCAAATTATGAATATAG+CGG - tig0033146:3649-3668 Msa1450910:intron 20.0%
!!! CAACAAAATATTTCTATCTT+TGG + tig0033146:4264-4283 Msa1450910:intergenic 20.0%
!!! CAAAGATAGAAATATTTTGT+TGG - tig0033146:4262-4281 Msa1450910:intron 20.0%
!! ACATGTTAAGAATCTAAAAA+TGG + tig0033146:4356-4375 Msa1450910:intergenic 20.0%
!! TATAACTTTATAGGTACTAA+GGG + tig0033146:4663-4682 Msa1450910:intergenic 20.0%
!! AACAATAGAAACTAAGTTAA+AGG - tig0033146:4694-4713 Msa1450910:intron 20.0%
!! AATTATATGAAGATCGTAAA+GGG + tig0033146:4784-4803 Msa1450910:intergenic 20.0%
!! AAATTATATGAAGATCGTAA+AGG + tig0033146:4785-4804 Msa1450910:intergenic 20.0%
!! ATACAACAAAACAAAACTTA+CGG + tig0033146:4907-4926 Msa1450910:intergenic 20.0%
!! GTAAGTTAATAATGAAAACA+AGG + tig0033146:4941-4960 Msa1450910:intergenic 20.0%
!! CTGTAAAAACAAATTCTTAT+GGG + tig0033146:5389-5408 Msa1450910:intergenic 20.0%
!! TCTGTAAAAACAAATTCTTA+TGG + tig0033146:5390-5409 Msa1450910:intergenic 20.0%
!!! AGAATTTGTTTTTACAGAAA+TGG - tig0033146:5392-5411 Msa1450910:intron 20.0%
!!! ACTTTTATAGAAAATACCAA+GGG + tig0033146:6620-6639 Msa1450910:intergenic 20.0%
!!! AACTTTTATAGAAAATACCA+AGG + tig0033146:6621-6640 Msa1450910:intergenic 20.0%
!!! GGTATTTTCTATAAAAGTTT+TGG - tig0033146:6622-6641 Msa1450910:intron 20.0%
!!! AATTTGTTTCCTTTTATCAA+AGG + tig0033146:8322-8341 Msa1450910:intergenic 20.0%
!! TTTATTTCAAAGAACAAATG+AGG + tig0033146:8465-8484 Msa1450910:intergenic 20.0%
!!! TTTTGGTTACTTTTTTAACT+CGG - tig0033146:8767-8786 Msa1450910:five_prime_UTR 20.0%
!! TACAATTAAAACATAAAAGG+AGG + tig0033146:8875-8894 Msa1450910:intergenic 20.0%
! AGCCAAATACAAAAATGAAA+AGG + tig0033146:3366-3385 Msa1450910:intergenic 25.0%
!! GTTTCTCTTATAGTTTTTCT+AGG + tig0033146:3749-3768 Msa1450910:intergenic 25.0%
! AGATTTAGAGATTAATGAGT+TGG - tig0033146:3778-3797 Msa1450910:CDS 25.0%
!! TAATGAGTTGGATCAAAATA+TGG - tig0033146:3790-3809 Msa1450910:CDS 25.0%
! TGGTTTATGATAGAACAATA+CGG - tig0033146:3810-3829 Msa1450910:CDS 25.0%
! CTAGTTTAATATATATGCAC+AGG + tig0033146:4468-4487 Msa1450910:intergenic 25.0%
! TATCTAATCTGTATGTTTCA+TGG - tig0033146:4566-4585 Msa1450910:intron 25.0%
! CTATAACTTTATAGGTACTA+AGG + tig0033146:4664-4683 Msa1450910:intergenic 25.0%
! CTTAGTACCTATAAAGTTAT+AGG - tig0033146:4662-4681 Msa1450910:intron 25.0%
! TAGGCATAAAAATTCATTCA+GGG - tig0033146:4745-4764 Msa1450910:intron 25.0%
! ATTATATGAAGATCGTAAAG+GGG + tig0033146:4783-4802 Msa1450910:intergenic 25.0%
! CGATCTTCATATAATTTGAA+AGG - tig0033146:4788-4807 Msa1450910:intron 25.0%
! GTCATAAATTGTACCAAATA+TGG + tig0033146:5768-5787 Msa1450910:intergenic 25.0%
! TCATCAATGAACATATAGAA+AGG + tig0033146:5919-5938 Msa1450910:intergenic 25.0%
! AGTGTGTAACTTATTATGTA+TGG - tig0033146:6185-6204 Msa1450910:intron 25.0%
! CATCAATCCAAATTGAATAT+CGG + tig0033146:6286-6305 Msa1450910:intergenic 25.0%
! GATATTCAATTTGGATTGAT+GGG - tig0033146:6285-6304 Msa1450910:CDS 25.0%
! ACCTTTCAAGAATTTGATAT+GGG + tig0033146:6331-6350 Msa1450910:intergenic 25.0%
! TACCTTTCAAGAATTTGATA+TGG + tig0033146:6332-6351 Msa1450910:intergenic 25.0%
! TCAAATTCTTGAAAGGTAAA+AGG - tig0033146:6334-6353 Msa1450910:CDS 25.0%
! AAATAAACCCTCTAATTGTA+TGG + tig0033146:6484-6503 Msa1450910:intergenic 25.0%
! CTACAAAATGAAATCTAAGT+CGG + tig0033146:6668-6687 Msa1450910:intergenic 25.0%
! GTGTAATATTTCTTAGTTAG+TGG + tig0033146:6871-6890 Msa1450910:intergenic 25.0%
! GTAGTAAATAAGACAGTTAA+AGG - tig0033146:6994-7013 Msa1450910:intron 25.0%
! AAAGGAAAAATAGTTTAGTC+AGG - tig0033146:7012-7031 Msa1450910:intron 25.0%
!! AAAATAGTTTAGTCAGGTTT+TGG - tig0033146:7018-7037 Msa1450910:intron 25.0%
!!! GGTATTGATAAAATTGAACT+TGG + tig0033146:7500-7519 Msa1450910:intergenic 25.0%
!! AAATAATGGCAAAAGTTGAT+TGG - tig0033146:7815-7834 Msa1450910:intron 25.0%
! AGAAAACAATTTCTCAAATC+GGG + tig0033146:8099-8118 Msa1450910:intergenic 25.0%
! CAGAAAACAATTTCTCAAAT+CGG + tig0033146:8100-8119 Msa1450910:intergenic 25.0%
! ATGTACAAACCTTTGATAAA+AGG - tig0033146:8310-8329 Msa1450910:CDS 25.0%
! AAATGAGGAAAGAAAAAAGA+AGG + tig0033146:8450-8469 Msa1450910:intergenic 25.0%
!!! TTTGGTTACTTTTTTAACTC+GGG - tig0033146:8768-8787 Msa1450910:five_prime_UTR 25.0%
GGTAAAAATGGAAACTTGAT+CGG + tig0033146:2871-2890 Msa1450910:intergenic 30.0%
!! AATGATTTCGGATTTTGAGT+GGG + tig0033146:2901-2920 Msa1450910:intergenic 30.0%
TTGAAATCAAATGTAGCTTC+TGG - tig0033146:2943-2962 Msa1450910:CDS 30.0%
TGAAATCAAATGTAGCTTCT+GGG - tig0033146:2944-2963 Msa1450910:CDS 30.0%
! AGATTTGATTGTTGTTACAG+TGG - tig0033146:3089-3108 Msa1450910:intron 30.0%
GAAAAGGAGATGAAATTGAA+AGG - tig0033146:3125-3144 Msa1450910:intron 30.0%
TTGTATATTTGTCGTCATCT+TGG - tig0033146:3301-3320 Msa1450910:intron 30.0%
!! GGCCTTTTCATTTTTGTATT+TGG - tig0033146:3361-3380 Msa1450910:intron 30.0%
TATAGCCACTATATGTAGTA+AGG - tig0033146:3675-3694 Msa1450910:CDS 30.0%
!!! GGTTAGTACTGATTTTATGA+AGG - tig0033146:4069-4088 Msa1450910:CDS 30.0%
GACGAACATAAATCATCTAT+GGG + tig0033146:4184-4203 Msa1450910:intergenic 30.0%
!! TCGTCGAGATATTTTAGAAA+TGG - tig0033146:4199-4218 Msa1450910:intron 30.0%
!! CGTCGAGATATTTTAGAAAT+GGG - tig0033146:4200-4219 Msa1450910:intron 30.0%
AAACCAATCATATCTCATCA+TGG + tig0033146:4434-4453 Msa1450910:intergenic 30.0%
TCGTGTATCTTCAATTTCAT+TGG + tig0033146:4633-4652 Msa1450910:intergenic 30.0%
ATCAACGCCTATAACTTTAT+AGG + tig0033146:4672-4691 Msa1450910:intergenic 30.0%
!! TATAAAGTTATAGGCGTTGA+TGG - tig0033146:4671-4690 Msa1450910:intron 30.0%
GTAGGCATAAAAATTCATTC+AGG - tig0033146:4744-4763 Msa1450910:intron 30.0%
AAATTCTTATGGGACACTAA+TGG + tig0033146:5379-5398 Msa1450910:intergenic 30.0%
TGTCTCTACTTCATCAAATT+GGG + tig0033146:5506-5525 Msa1450910:intergenic 30.0%
ATGTCTCTACTTCATCAAAT+TGG + tig0033146:5507-5526 Msa1450910:intergenic 30.0%
TGTGTGTCAAATGTGATAAA+AGG + tig0033146:5634-5653 Msa1450910:intergenic 30.0%
ACTCTTGACAGATTTGTAAA+AGG - tig0033146:5653-5672 Msa1450910:CDS 30.0%
GGACAAAACAATATGTAGAT+CGG + tig0033146:5796-5815 Msa1450910:intergenic 30.0%
CAATGAGAAACAGAAAACAA+AGG + tig0033146:5817-5836 Msa1450910:intergenic 30.0%
TGTATTACATCATAGTTTCC+TGG + tig0033146:5856-5875 Msa1450910:intergenic 30.0%
! TATGAGAAATGCCAGTATTT+TGG - tig0033146:5954-5973 Msa1450910:intron 30.0%
GTGGCATGATATTAGAAATA+GGG + tig0033146:6138-6157 Msa1450910:intergenic 30.0%
TATCGTACTCATTATATCGT+AGG + tig0033146:6160-6179 Msa1450910:intergenic 30.0%
! ATTCTGTGCAAAAGAAGTTT+TGG + tig0033146:6251-6270 Msa1450910:intergenic 30.0%
AAATTGAATATCGGATGTTG+GGG + tig0033146:6277-6296 Msa1450910:intergenic 30.0%
CAAATTGAATATCGGATGTT+GGG + tig0033146:6278-6297 Msa1450910:intergenic 30.0%
CGATATTCAATTTGGATTGA+TGG - tig0033146:6284-6303 Msa1450910:CDS 30.0%
ACCCATATCAAATTCTTGAA+AGG - tig0033146:6327-6346 Msa1450910:CDS 30.0%
AAAATCAGCCATACAATTAG+AGG - tig0033146:6473-6492 Msa1450910:intron 30.0%
AAATCAGCCATACAATTAGA+GGG - tig0033146:6474-6493 Msa1450910:intron 30.0%
TAAAAACATGCAAATCCATG+CGG + tig0033146:6531-6550 Msa1450910:intergenic 30.0%
AACTTGAAACCAAATTGCAA+GGG + tig0033146:6589-6608 Msa1450910:intergenic 30.0%
AAACTTGAAACCAAATTGCA+AGG + tig0033146:6590-6609 Msa1450910:intergenic 30.0%
TATAGTGCACCAAAAACTAA+GGG + tig0033146:6721-6740 Msa1450910:intergenic 30.0%
ATATAGTGCACCAAAAACTA+AGG + tig0033146:6722-6741 Msa1450910:intergenic 30.0%
TTTCTTAGTTAGTGGTCTAA+CGG + tig0033146:6863-6882 Msa1450910:intergenic 30.0%
!! TTTTGGTTAAGGAATTGGAA+TGG - tig0033146:7035-7054 Msa1450910:intron 30.0%
ATAGGAAATTTCAAGAGACA+GGG + tig0033146:7112-7131 Msa1450910:intergenic 30.0%
ATTACTGTTGACAAATGACA+GGG + tig0033146:7298-7317 Msa1450910:intergenic 30.0%
AATTACTGTTGACAAATGAC+AGG + tig0033146:7299-7318 Msa1450910:intergenic 30.0%
AAATGGCAAAAGTAGCATTT+GGG + tig0033146:7392-7411 Msa1450910:intergenic 30.0%
! CAATTTTATCAATACCACGA+TGG - tig0033146:7504-7523 Msa1450910:intron 30.0%
AATAATGAGTTAAACCATCG+TGG + tig0033146:7521-7540 Msa1450910:intergenic 30.0%
ATGGTTTAACTCATTATTCC+AGG - tig0033146:7523-7542 Msa1450910:intron 30.0%
TGGTTTAACTCATTATTCCA+GGG - tig0033146:7524-7543 Msa1450910:intron 30.0%
TTGTTCTTACCACTAGTTAT+AGG + tig0033146:7558-7577 Msa1450910:intergenic 30.0%
CAGGTAAACAGATTTGTAAT+TGG + tig0033146:7727-7746 Msa1450910:intergenic 30.0%
! TTGGAGTATCAATATGTTTC+TGG - tig0033146:7834-7853 Msa1450910:intron 30.0%
CAGAGTTGTACAGAAAATAA+TGG + tig0033146:8209-8228 Msa1450910:intergenic 30.0%
AATTAGCCAAAATCTCATGA+GGG + tig0033146:8365-8384 Msa1450910:intergenic 30.0%
AAAAAGTAACCAAAACCTCA+AGG + tig0033146:8762-8781 Msa1450910:intergenic 30.0%
!!! TTGGTTACTTTTTTAACTCG+GGG - tig0033146:8769-8788 Msa1450910:five_prime_UTR 30.0%
AATCAGAGAATTGGGGAATT+GGG + tig0033146:2758-2777 Msa0648120:intergenic 35.0%
AATCGGAGAATCAGAGAATT+GGG + tig0033146:2766-2785 Msa0648120:intergenic 35.0%
GAAATCAATGAACGGAATCT+CGG + tig0033146:2802-2821 Msa0648120:intergenic 35.0%
GTGAAGAGGAAATCAATGAA+CGG + tig0033146:2810-2829 Msa0648120:intergenic 35.0%
!! ATGATTTCGGATTTTGAGTG+GGG + tig0033146:2900-2919 Msa1450910:intergenic 35.0%
! GAATGATTTCGGATTTTGAG+TGG + tig0033146:2902-2921 Msa1450910:intergenic 35.0%
TCAAAATCCGAAATCATTCG+TGG - tig0033146:2903-2922 Msa1450910:CDS 35.0%
CAAAATCCGAAATCATTCGT+GGG - tig0033146:2904-2923 Msa1450910:CDS 35.0%
TTGATTTCAAGCGATGAGAA+GGG + tig0033146:2933-2952 Msa1450910:intergenic 35.0%
! TTTGATTTCAAGCGATGAGA+AGG + tig0033146:2934-2953 Msa1450910:intergenic 35.0%
GAAATCAAATGTAGCTTCTG+GGG - tig0033146:2945-2964 Msa1450910:CDS 35.0%
! TTTGATTGTTGTTACAGTGG+TGG - tig0033146:3092-3111 Msa1450910:intron 35.0%
! TTGATTGTTGTTACAGTGGT+GGG - tig0033146:3093-3112 Msa1450910:intron 35.0%
! TCTCTGCAGTTGATTCAAAA+CGG - tig0033146:3196-3215 Msa1450910:intron 35.0%
!! CTTTCTCTTTGGGGTTATAA+AGG + tig0033146:3270-3289 Msa1450910:intergenic 35.0%
! TATCGGTTGTTGTTAAGTAG+TGG - tig0033146:3513-3532 Msa1450910:intron 35.0%
ACTCTCCTTACTACATATAG+TGG + tig0033146:3683-3702 Msa1450910:intergenic 35.0%
! AAGTCTTATCCCACTAAATG+GGG + tig0033146:3859-3878 Msa1450910:intergenic 35.0%
! CAAGTCTTATCCCACTAAAT+GGG + tig0033146:3860-3879 Msa1450910:intergenic 35.0%
TTGCTACATAGATGTGGATT+TGG - tig0033146:3977-3996 Msa1450910:intron 35.0%
!! TCTACCATTGATTCAACATC+GGG + tig0033146:4045-4064 Msa1450910:intergenic 35.0%
!! CTCTACCATTGATTCAACAT+CGG + tig0033146:4046-4065 Msa1450910:intergenic 35.0%
GTTGAATCAATGGTAGAGAT+TGG - tig0033146:4048-4067 Msa1450910:CDS 35.0%
!! CTCAGTCATTGATTTGAGAT+TGG + tig0033146:4110-4129 Msa1450910:intergenic 35.0%
TCTAATACTACGTGTAACTG+CGG - tig0033146:4131-4150 Msa1450910:CDS 35.0%
CGACGAACATAAATCATCTA+TGG + tig0033146:4185-4204 Msa1450910:intergenic 35.0%
ACACCATGATGAGATATGAT+TGG - tig0033146:4428-4447 Msa1450910:intron 35.0%
! TATGTTTCATGGTGTGCTTT+TGG - tig0033146:4577-4596 Msa1450910:intron 35.0%
!! TTGGTGTTGTGTTGAACTAT+AGG - tig0033146:4596-4615 Msa1450910:intron 35.0%
CATCAAAATCAAATCCAGTC+TGG + tig0033146:5694-5713 Msa1450910:intergenic 35.0%
!! GACTGGATTTGATTTTGATG+AGG - tig0033146:5694-5713 Msa1450910:intron 35.0%
CAGATGCAACAATGATATCA+TGG + tig0033146:5745-5764 Msa1450910:intergenic 35.0%
ATTGTTGCATCTGCCATATT+TGG - tig0033146:5752-5771 Msa1450910:intron 35.0%
TATGGAGAATCATTGTTGTC+CGG - tig0033146:5998-6017 Msa1450910:intron 35.0%
AATCAGCGTATGGAATATTC+CGG + tig0033146:6020-6039 Msa1450910:intergenic 35.0%
!! ATATTCCATACGCTGATTCT+AGG - tig0033146:6022-6041 Msa1450910:intron 35.0%
GGTGGCATGATATTAGAAAT+AGG + tig0033146:6139-6158 Msa1450910:intergenic 35.0%
! GAGGCATCATAATTCATAAG+AGG + tig0033146:6211-6230 Msa1450910:intergenic 35.0%
GGAATCTGCAATAAGTTTAG+AGG + tig0033146:6230-6249 Msa1450910:intergenic 35.0%
CCAAATTGAATATCGGATGT+TGG + tig0033146:6279-6298 Msa1450910:intergenic 35.0%
CCAACATCCGATATTCAATT+TGG - tig0033146:6276-6295 Msa1450910:CDS 35.0%
! TTGCTAAATGATTTTCCGCA+TGG - tig0033146:6513-6532 Msa1450910:intron 35.0%
!! AATATGCAGCCCTTAGTTTT+TGG - tig0033146:6709-6728 Msa1450910:CDS 35.0%
ACTTAGCAAAGTTACCTAGA+AGG - tig0033146:6755-6774 Msa1450910:CDS 35.0%
TTACACTAAGAGACCTAAAC+AGG - tig0033146:6885-6904 Msa1450910:CDS 35.0%
!!! GTTTAGTCAGGTTTTGGTTA+AGG - tig0033146:7024-7043 Msa1450910:intron 35.0%
!!! TCAGGTTTTGGTTAAGGAAT+TGG - tig0033146:7030-7049 Msa1450910:intron 35.0%
GATTCCATGCTTTCAAAACT+TGG - tig0033146:7061-7080 Msa1450910:intron 35.0%
CATGCTTTCAAAACTTGGAA+GGG - tig0033146:7066-7085 Msa1450910:intron 35.0%
CATAGGAAATTTCAAGAGAC+AGG + tig0033146:7113-7132 Msa1450910:intergenic 35.0%
TTGTAAACATAGACCTCATG+AGG - tig0033146:7252-7271 Msa1450910:intron 35.0%
CTGGATGATATAAAAGAGAG+TGG + tig0033146:7357-7376 Msa1450910:intergenic 35.0%
! CACTCTCTTTTATATCATCC+AGG - tig0033146:7355-7374 Msa1450910:intron 35.0%
TTATATCATCCAGGTTCTTG+TGG - tig0033146:7364-7383 Msa1450910:intron 35.0%
GAAATGGCAAAAGTAGCATT+TGG + tig0033146:7393-7412 Msa1450910:intergenic 35.0%
AAATTGAACTTGGCGATCAA+TGG + tig0033146:7490-7509 Msa1450910:intergenic 35.0%
! ATAACCTATTTTGCACACAC+AGG + tig0033146:7597-7616 Msa1450910:intergenic 35.0%
CTAATGATAACACAACCTTC+AGG + tig0033146:7694-7713 Msa1450910:intergenic 35.0%
CAAATCTGTTTACCTGCTTA+TGG - tig0033146:7731-7750 Msa1450910:intron 35.0%
AACTTCATTGAACCATAAGC+AGG + tig0033146:7746-7765 Msa1450910:intergenic 35.0%
! ACTGATCTCTAGAAGTAAAG+CGG + tig0033146:7771-7790 Msa1450910:intergenic 35.0%
! AGATCAGTTAAGCTTTTCCA+CGG - tig0033146:7783-7802 Msa1450910:intron 35.0%
!! CATTATTTTGTCTCTTACCG+TGG + tig0033146:7803-7822 Msa1450910:intergenic 35.0%
CACGGTAAGAGACAAAATAA+TGG - tig0033146:7801-7820 Msa1450910:intron 35.0%
!! ATATGTTTCTGGATTGTGAG+AGG - tig0033146:7845-7864 Msa1450910:intron 35.0%
CCAAACTGAACACAGAAAAA+TGG + tig0033146:7907-7926 Msa1450910:intergenic 35.0%
!! CCATTTTTCTGTGTTCAGTT+TGG - tig0033146:7904-7923 Msa1450910:intron 35.0%
ACAAGTGTTTCAGAGATCTT+TGG - tig0033146:7963-7982 Msa1450910:intron 35.0%
CAAGTGTTTCAGAGATCTTT+GGG - tig0033146:7964-7983 Msa1450910:intron 35.0%
AAGTGTTTCAGAGATCTTTG+GGG - tig0033146:7965-7984 Msa1450910:intron 35.0%
CAGTGATTCAATAGAACTGA+GGG + tig0033146:8040-8059 Msa1450910:intergenic 35.0%
TCAGTGATTCAATAGAACTG+AGG + tig0033146:8041-8060 Msa1450910:intergenic 35.0%
TGAATCACTGAACATTGTGA+AGG - tig0033146:8050-8069 Msa1450910:intron 35.0%
AAACAATTTCTCAAATCGGG+TGG + tig0033146:8096-8115 Msa1450910:intergenic 35.0%
TGAACATTTGTACGTGAAAC+AGG - tig0033146:8173-8192 Msa1450910:CDS 35.0%
! TCTGTACAACTCTGAAAACA+AGG - tig0033146:8215-8234 Msa1450910:CDS 35.0%
! ATTTTCCCCTCATGAGATTT+TGG - tig0033146:8356-8375 Msa1450910:CDS 35.0%
ATTAGCCAAAATCTCATGAG+GGG + tig0033146:8364-8383 Msa1450910:intergenic 35.0%
GAATTAGCCAAAATCTCATG+AGG + tig0033146:8366-8385 Msa1450910:intergenic 35.0%
GAGGAAAGAAAAAAGAAGGT+TGG + tig0033146:8446-8465 Msa1450910:intergenic 35.0%
TTGTTAGTAGTATAGGGAAC+AGG + tig0033146:8616-8635 Msa1450910:intergenic 35.0%
!! AGAGGCTTGTTAGTAGTATA+GGG + tig0033146:8622-8641 Msa1450910:intergenic 35.0%
! ATCTTTTCTCCTTGAGGTTT+TGG - tig0033146:8750-8769 Msa1450910:five_prime_UTR 35.0%
TTTGGAAGGAAGATGGAAGA+TGG + tig0033146:2734-2753 Msa0648120:intergenic 40.0%
ATTGGGATTTGGAAGGAAGA+TGG + tig0033146:2741-2760 Msa0648120:intergenic 40.0%
AGAATTGGGGAATTGGGATT+TGG + tig0033146:2752-2771 Msa0648120:intergenic 40.0%
GAATCAGAGAATTGGGGAAT+TGG + tig0033146:2759-2778 Msa0648120:intergenic 40.0%
ATCGGAGAATCAGAGAATTG+GGG + tig0033146:2765-2784 Msa0648120:intergenic 40.0%
GAATCGGAGAATCAGAGAAT+TGG + tig0033146:2767-2786 Msa0648120:intergenic 40.0%
TTGATCGGAAAAGAGGAAGT+GGG + tig0033146:2856-2875 Msa1450910:intergenic 40.0%
TGGAAACTTGATCGGAAAAG+AGG + tig0033146:2863-2882 Msa1450910:intergenic 40.0%
ATTGAAAGGAGAGAGATGAC+TGG - tig0033146:3139-3158 Msa1450910:intron 40.0%
ATAACCCCAAAGAGAAAGAG+AGG - tig0033146:3272-3291 Msa1450910:intron 40.0%
AACTCCTCTCTTTCTCTTTG+GGG + tig0033146:3279-3298 Msa1450910:intergenic 40.0%
CAACTCCTCTCTTTCTCTTT+GGG + tig0033146:3280-3299 Msa1450910:intergenic 40.0%
ACAACTCCTCTCTTTCTCTT+TGG + tig0033146:3281-3300 Msa1450910:intergenic 40.0%
! ACAAAGAAGCATGAGAAGCA+TGG + tig0033146:3341-3360 Msa1450910:intergenic 40.0%
ATGCTTCTCATGCTTCTTTG+TGG - tig0033146:3340-3359 Msa1450910:intron 40.0%
! GGCTGCTTTACACTTTACAA+AGG - tig0033146:3382-3401 Msa1450910:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG - tig0033146:3575-3594 Msa1450910:intron 40.0%
AGTAAGGAGAGTAGATCAGA+TGG - tig0033146:3575-3594 Msa1450910:intron 40.0%
ATGGAGGATAGTTAGATCAC+TGG - tig0033146:3710-3729 Msa1450910:CDS 40.0%
AGTTAGATCACTGGATGTAG+AGG - tig0033146:3719-3738 Msa1450910:CDS 40.0%
! CCAAGTCTTATCCCACTAAA+TGG + tig0033146:3861-3880 Msa1450910:intergenic 40.0%
CCATTTAGTGGGATAAGACT+TGG - tig0033146:3858-3877 Msa1450910:intron 40.0%
ACGATCAATGTTGTCAATCG+CGG + tig0033146:3954-3973 Msa1450910:intergenic 40.0%
CGTATCTTGCTACATAGATG+TGG - tig0033146:3971-3990 Msa1450910:intron 40.0%
AATGTTATCTTGTGCCCTCA+AGG - tig0033146:4224-4243 Msa1450910:intron 40.0%
!! CTTCTTAACTTGTGCCTTGA+GGG + tig0033146:4241-4260 Msa1450910:intergenic 40.0%
ATTCTTAACATGTGCCCTGA+GGG - tig0033146:4363-4382 Msa1450910:intron 40.0%
GTGTTGTGTTGAACTATAGG+TGG - tig0033146:4599-4618 Msa1450910:intron 40.0%
AAAAGGATCTTCCTCTACTG+TGG - tig0033146:4814-4833 Msa1450910:intron 40.0%
AAAGGATCTTCCTCTACTGT+GGG - tig0033146:4815-4834 Msa1450910:intron 40.0%
ACAAAACAAAACTTACGGCG+TGG + tig0033146:4902-4921 Msa1450910:intergenic 40.0%
TATGTTTCCAAGTGAACCAG+AGG - tig0033146:5187-5206 Msa1450910:intron 40.0%
ATGTTTCCAAGTGAACCAGA+GGG - tig0033146:5188-5207 Msa1450910:intron 40.0%
! AGACCATGAAAGTGCATTGT+GGG - tig0033146:5273-5292 Msa1450910:CDS 40.0%
TAACCCACAATGCACTTTCA+TGG + tig0033146:5279-5298 Msa1450910:intergenic 40.0%
TTCTTGCAGTGACTGTATCT+CGG - tig0033146:5432-5451 Msa1450910:intron 40.0%
CCGTTGAACGAAGATCAAAT+GGG + tig0033146:5532-5551 Msa1450910:intergenic 40.0%
CCCATTTGATCTTCGTTCAA+CGG - tig0033146:5529-5548 Msa1450910:CDS 40.0%
ACCGTTGAACGAAGATCAAA+TGG + tig0033146:5533-5552 Msa1450910:intergenic 40.0%
TTCGTTCAACGGTTTAGATG+TGG - tig0033146:5540-5559 Msa1450910:CDS 40.0%
TTTGTAAAAGGAAGCAGACC+TGG - tig0033146:5665-5684 Msa1450910:CDS 40.0%
TTGTAAAAGGAAGCAGACCT+GGG - tig0033146:5666-5685 Msa1450910:CDS 40.0%
GCTTGTTTACTGATGTTCCT+GGG + tig0033146:5883-5902 Msa1450910:intergenic 40.0%
TGCTTGTTTACTGATGTTCC+TGG + tig0033146:5884-5903 Msa1450910:intergenic 40.0%
GGAACATCAGTAAACAAGCA+AGG - tig0033146:5884-5903 Msa1450910:intron 40.0%
!! ATGCCAGTATTTTGGATAGC+AGG - tig0033146:5962-5981 Msa1450910:intron 40.0%
! TGATTCTAGGCGTAATGGAA+AGG - tig0033146:6035-6054 Msa1450910:intron 40.0%
CGTACTCATTATATCGTAGG+TGG + tig0033146:6157-6176 Msa1450910:intergenic 40.0%
TATTCCTGTTGTACGTAGAG+TGG - tig0033146:6380-6399 Msa1450910:CDS 40.0%
ATTCCTGTTGTACGTAGAGT+GGG - tig0033146:6381-6400 Msa1450910:CDS 40.0%
TCACTCAATGAAAGCCTTCT+AGG + tig0033146:6772-6791 Msa1450910:intergenic 40.0%
GTGAAGAACTGCTTACTCTA+AGG - tig0033146:6811-6830 Msa1450910:CDS 40.0%
TCGCACAATAACTATCCCAA+GGG + tig0033146:6922-6941 Msa1450910:intergenic 40.0%
ATCGCACAATAACTATCCCA+AGG + tig0033146:6923-6942 Msa1450910:intergenic 40.0%
!!! CCTTCCAAGTTTTGAAAGCA+TGG + tig0033146:7068-7087 Msa1450910:intergenic 40.0%
CCATGCTTTCAAAACTTGGA+AGG - tig0033146:7065-7084 Msa1450910:intron 40.0%
GACAGGGATGACATAATGTT+TGG + tig0033146:7096-7115 Msa1450910:intergenic 40.0%
CACATGCAACAACACAACAT+AGG + tig0033146:7130-7149 Msa1450910:intergenic 40.0%
TGTTGATACACTGTCTCAGA+GGG - tig0033146:7174-7193 Msa1450910:intron 40.0%
GCGTCTATAGTGTCTTGAAA+TGG + tig0033146:7409-7428 Msa1450910:intergenic 40.0%
GCTAAGCTTCCTATAACTAG+TGG - tig0033146:7546-7565 Msa1450910:intron 40.0%
! GGAGTATTATATGCAACCAC+AGG + tig0033146:7638-7657 Msa1450910:intergenic 40.0%
GAGGCGTAACTTTGTAATAC+AGG - tig0033146:7864-7883 Msa1450910:intron 40.0%
GGTTTGTGATAAACAATGCC+AGG - tig0033146:8501-8520 Msa1450910:five_prime_UTR 40.0%
TGTTCTCCAATACGTCTCTA+TGG + tig0033146:8531-8550 Msa1450910:intergenic 40.0%
CTCGTCCAGTTGTTGTAATT+CGG - tig0033146:8575-8594 Msa1450910:five_prime_UTR 40.0%
TTAGTAGTATAGGGAACAGG+TGG + tig0033146:8613-8632 Msa1450910:intergenic 40.0%
!! CAGAGGCTTGTTAGTAGTAT+AGG + tig0033146:8623-8642 Msa1450910:intergenic 40.0%
CTATACTACTAACAAGCCTC+TGG - tig0033146:8621-8640 Msa1450910:five_prime_UTR 40.0%
! GTCTTGATCTTTTCTCCTTG+AGG - tig0033146:8744-8763 Msa1450910:five_prime_UTR 40.0%
!! AGGAGGCAGCATTTTTGAAA+TGG + tig0033146:8858-8877 Msa1450910:intergenic 40.0%
TGAATGGAGGGAAGAGAGAA+TGG + tig0033146:2679-2698 Msa0648120:intergenic 45.0%
!! ATGGAGATGGTGATGGATTG+AGG + tig0033146:2709-2728 Msa0648120:intergenic 45.0%
ATGGAAGATGGAGATGGAGA+TGG + tig0033146:2722-2741 Msa0648120:intergenic 45.0%
AGGAAGATGGAAGATGGAGA+TGG + tig0033146:2728-2747 Msa0648120:intergenic 45.0%
TTGGGGAATTGGGATTTGGA+AGG + tig0033146:2748-2767 Msa0648120:intergenic 45.0%
ATCAATGAACGGAATCTCGG+CGG + tig0033146:2799-2818 Msa0648120:intergenic 45.0%
CTTGATCGGAAAAGAGGAAG+TGG + tig0033146:2857-2876 Msa1450910:intergenic 45.0%
!! ATTTCGGATTTTGAGTGGGG+TGG + tig0033146:2897-2916 Msa1450910:intergenic 45.0%
GGGAAACCCACGAATGATTT+CGG + tig0033146:2913-2932 Msa1450910:intergenic 45.0%
!! TGTTACAGTGGTGGGTTTGA+TGG - tig0033146:3101-3120 Msa1450910:intron 45.0%
!! TGGTGGGTTTGATGGTGAAA+AGG - tig0033146:3109-3128 Msa1450910:intron 45.0%
! AGAGATGACTGGAGTGTCAT+TGG - tig0033146:3150-3169 Msa1450910:intron 45.0%
! GAGATGACTGGAGTGTCATT+GGG - tig0033146:3151-3170 Msa1450910:intron 45.0%
TCAAAACGGTAACGTTTCGC+AGG - tig0033146:3210-3229 Msa1450910:intron 45.0%
ATTTGTCGTCATCTTGGTCG+TGG - tig0033146:3307-3326 Msa1450910:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG - tig0033146:3578-3597 Msa1450910:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG - tig0033146:3578-3597 Msa1450910:intron 45.0%
CTTATCCCACTAAATGGGGT+CGG + tig0033146:3855-3874 Msa1450910:intergenic 45.0%
ATTGCACGCAGTTACTGTTG+CGG - tig0033146:4000-4019 Msa1450910:CDS 45.0%
!! ACCATTGATTCAACATCGGG+CGG + tig0033146:4042-4061 Msa1450910:intergenic 45.0%
TGATCCCCTGCAGTAGAAAA+AGG + tig0033146:4157-4176 Msa1450910:intergenic 45.0%
! TTTTCTACTGCAGGGGATCA+TGG - tig0033146:4157-4176 Msa1450910:CDS 45.0%
!! GCTTCTTAACTTGTGCCTTG+AGG + tig0033146:4242-4261 Msa1450910:intergenic 45.0%
GATTCTTAACATGTGCCCTG+AGG - tig0033146:4362-4381 Msa1450910:intron 45.0%
AGTGTTATCTTGTGCCCTCA+GGG + tig0033146:4380-4399 Msa1450910:intergenic 45.0%
TAGTGTTATCTTGTGCCCTC+AGG + tig0033146:4381-4400 Msa1450910:intergenic 45.0%
CTTCTACGTCGTTGACAAGT+AGG - tig0033146:4726-4745 Msa1450910:intron 45.0%
GAAGATCGTAAAGGGGAAAC+AGG + tig0033146:4776-4795 Msa1450910:intergenic 45.0%
GAGGAGGAGGAAATGCAAAA+TGG + tig0033146:4853-4872 Msa1450910:intergenic 45.0%
TCCTGTGTGCTATATTCCTG+TGG - tig0033146:5085-5104 Msa1450910:intron 45.0%
TCCACAGGAATATAGCACAC+AGG + tig0033146:5089-5108 Msa1450910:intergenic 45.0%
AAGTACAGGAGACTCTGATG+GGG + tig0033146:5138-5157 Msa1450910:intergenic 45.0%
GAAGTACAGGAGACTCTGAT+GGG + tig0033146:5139-5158 Msa1450910:intergenic 45.0%
! TATGTGAGAGTGCGAAGTAC+AGG + tig0033146:5152-5171 Msa1450910:intergenic 45.0%
! ATACCCTCCTCTGGAAGAAA+GGG - tig0033146:5229-5248 Msa1450910:CDS 45.0%
! GAGACCATGAAAGTGCATTG+TGG - tig0033146:5272-5291 Msa1450910:CDS 45.0%
AGTGACTGTATCTCGGTTGT+TGG - tig0033146:5439-5458 Msa1450910:intron 45.0%
TGAGGAAGACCTCTTAGAGT+TGG - tig0033146:5712-5731 Msa1450910:intron 45.0%
!! GGTACTGATCCAACTCTAAG+AGG + tig0033146:5724-5743 Msa1450910:intergenic 45.0%
GTTTCCTGGCATAGATGTGA+TGG + tig0033146:5842-5861 Msa1450910:intergenic 45.0%
ATGATGTAATACAGCAGCCC+AGG - tig0033146:5863-5882 Msa1450910:CDS 45.0%
CCTCCTGCTATCCAAAATAC+TGG + tig0033146:5968-5987 Msa1450910:intergenic 45.0%
!! CCAGTATTTTGGATAGCAGG+AGG - tig0033146:5965-5984 Msa1450910:intron 45.0%
TTACGCCTAGAATCAGCGTA+TGG + tig0033146:6030-6049 Msa1450910:intergenic 45.0%
!! TACGCTGATTCTAGGCGTAA+TGG - tig0033146:6030-6049 Msa1450910:intron 45.0%
TATCCCACTCTACGTACAAC+AGG + tig0033146:6387-6406 Msa1450910:intergenic 45.0%
! TTCAAGTTTGTCTCTGCCCT+TGG - tig0033146:6601-6620 Msa1450910:intron 45.0%
!! TTACTCTAAGGCAGACTGCA+GGG - tig0033146:6823-6842 Msa1450910:CDS 45.0%
AGACCTAAACAGGTCTGAAC+CGG - tig0033146:6895-6914 Msa1450910:CDS 45.0%
CAATAACTATCCCAAGGGAC+CGG + tig0033146:6917-6936 Msa1450910:intergenic 45.0%
CTGTTGATACACTGTCTCAG+AGG - tig0033146:7173-7192 Msa1450910:intron 45.0%
TCATGAGGCCTCTCCTTATT+GGG - tig0033146:7267-7286 Msa1450910:intron 45.0%
ACGCTTTGATGTCTTTGTCG+AGG - tig0033146:7425-7444 Msa1450910:intron 45.0%
GCAGAGGCTAATAAAGTTGC+TGG - tig0033146:7447-7466 Msa1450910:intron 45.0%
AGTTATAGGAAGCTTAGCCC+TGG + tig0033146:7544-7563 Msa1450910:intergenic 45.0%
CATGCCTGTGTGTGCAAAAT+AGG - tig0033146:7590-7609 Msa1450910:intron 45.0%
! GGCACAAGGCACATTTTAGA+TGG + tig0033146:7659-7678 Msa1450910:intergenic 45.0%
TTCTCAAATCGGGTGGACAT+GGG + tig0033146:8089-8108 Msa1450910:intergenic 45.0%
TTTCTCAAATCGGGTGGACA+TGG + tig0033146:8090-8109 Msa1450910:intergenic 45.0%
CGAATTACAACAACTGGACG+AGG + tig0033146:8577-8596 Msa1450910:intergenic 45.0%
CTAGGATTCTTCTTCACCAG+AGG + tig0033146:8640-8659 Msa1450910:intergenic 45.0%
CTCTGGTGAAGAAGAATCCT+AGG - tig0033146:8638-8657 Msa1450910:five_prime_UTR 45.0%
TGAGGTGTAGCGTGAATGGA+GGG + tig0033146:2691-2710 Msa0648120:intergenic 50.0%
TTGAGGTGTAGCGTGAATGG+AGG + tig0033146:2692-2711 Msa0648120:intergenic 50.0%
GGATTGAGGTGTAGCGTGAA+TGG + tig0033146:2695-2714 Msa0648120:intergenic 50.0%
GATGGAGATGGAGATGGTGA+TGG + tig0033146:2716-2735 Msa0648120:intergenic 50.0%
ATTTCCTCTTCACCCTTCCC+CGG - tig0033146:2817-2836 Msa1450910:CDS 50.0%
! GTGTCATTGGGTCTACGAAC+AGG - tig0033146:3163-3182 Msa1450910:intron 50.0%
GGTCTACGAACAGGTAGCTA+TGG - tig0033146:3172-3191 Msa1450910:intron 50.0%
GAAGCTCTACGAACAAGCAC+CGG + tig0033146:3238-3257 Msa1450910:intergenic 50.0%
ACTAAATGGGGTCGGCTACA+TGG + tig0033146:3847-3866 Msa1450910:intergenic 50.0%
ATGTAGCCGACCCCATTTAG+TGG - tig0033146:3846-3865 Msa1450910:CDS 50.0%
TGTAGCCGACCCCATTTAGT+GGG - tig0033146:3847-3866 Msa1450910:CDS 50.0%
ATGTTGTCAATCGCGGATCG+TGG + tig0033146:3947-3966 Msa1450910:intergenic 50.0%
AGTTACTGTTGCGGTTGGAG+TGG - tig0033146:4009-4028 Msa1450910:CDS 50.0%
GTTACTGTTGCGGTTGGAGT+GGG - tig0033146:4010-4029 Msa1450910:CDS 50.0%
! TGCGGCCTTTTTCTACTGCA+GGG - tig0033146:4149-4168 Msa1450910:CDS 50.0%
ACACTGATGTCCCACAGTAG+AGG + tig0033146:4828-4847 Msa1450910:intergenic 50.0%
ACAAAACTTACGGCGTGGTC+CGG + tig0033146:4897-4916 Msa1450910:intergenic 50.0%
GCACACAGGACATGCTGAAA+GGG + tig0033146:5075-5094 Msa1450910:intergenic 50.0%
AGCACACAGGACATGCTGAA+AGG + tig0033146:5076-5095 Msa1450910:intergenic 50.0%
!! CTAGCTATAGCTTGCTCCAC+AGG + tig0033146:5104-5123 Msa1450910:intergenic 50.0%
CGAAGTACAGGAGACTCTGA+TGG + tig0033146:5140-5159 Msa1450910:intergenic 50.0%
TTTCCAAGTGAACCAGAGGG+CGG - tig0033146:5191-5210 Msa1450910:intron 50.0%
!! TTTTGGTGGATACCCTCCTC+TGG - tig0033146:5220-5239 Msa1450910:CDS 50.0%
! GATACCCTCCTCTGGAAGAA+AGG - tig0033146:5228-5247 Msa1450910:CDS 50.0%
TGCACTCAGTACGCACAAAC+TGG + tig0033146:5602-5621 Msa1450910:intergenic 50.0%
TGCTCCATCACATCTATGCC+AGG - tig0033146:5835-5854 Msa1450910:CDS 50.0%
TTGGATAGCAGGAGGAGAGT+TGG - tig0033146:5973-5992 Msa1450910:intron 50.0%
GCAGGAGGAGAGTTGGATTA+TGG - tig0033146:5980-5999 Msa1450910:intron 50.0%
CGTGCACATCCCTTGCAATT+TGG - tig0033146:6577-6596 Msa1450910:intron 50.0%
!! CTTACTCTAAGGCAGACTGC+AGG - tig0033146:6822-6841 Msa1450910:CDS 50.0%
GTCTAACGGTCTACTCCTGA+AGG + tig0033146:6849-6868 Msa1450910:intergenic 50.0%
CAATAAGGAGAGGCCTCATG+AGG + tig0033146:7268-7287 Msa1450910:intergenic 50.0%
CTCATGAGGCCTCTCCTTAT+TGG - tig0033146:7266-7285 Msa1450910:intron 50.0%
TGACAGGGAACAGCCCAATA+AGG + tig0033146:7283-7302 Msa1450910:intergenic 50.0%
TGATGTCTTTGTCGAGGCAG+AGG - tig0033146:7431-7450 Msa1450910:intron 50.0%
ATACGTCTCTATGGTACGCC+TGG + tig0033146:8522-8541 Msa1450910:intergenic 50.0%
GGCGTACCATAGAGACGTAT+TGG - tig0033146:8522-8541 Msa1450910:five_prime_UTR 50.0%
GGACGCCGAATTACAACAAC+TGG + tig0033146:8583-8602 Msa1450910:intergenic 50.0%
GTGAAGAAGAATCCTAGGCG+CGG - tig0033146:8643-8662 Msa1450910:five_prime_UTR 50.0%
TGAAGAAGAATCCTAGGCGC+GGG - tig0033146:8644-8663 Msa1450910:five_prime_UTR 50.0%
TCGGCGGTTGGAGTTCGAAT+CGG + tig0033146:2783-2802 Msa0648120:intergenic 55.0%
ATGAACGGAATCTCGGCGGT+TGG + tig0033146:2795-2814 Msa0648120:intergenic 55.0%
GTGGGGTGGAGGGGTAAAAA+TGG + tig0033146:2883-2902 Msa1450910:intergenic 55.0%
!! GGATTTTGAGTGGGGTGGAG+GGG + tig0033146:2892-2911 Msa1450910:intergenic 55.0%
!! CGGATTTTGAGTGGGGTGGA+GGG + tig0033146:2893-2912 Msa1450910:intergenic 55.0%
!! TCGGATTTTGAGTGGGGTGG+AGG + tig0033146:2894-2913 Msa1450910:intergenic 55.0%
CGGTAACGTTTCGCAGGTTC+CGG - tig0033146:3216-3235 Msa1450910:intron 55.0%
CACGCAGTTACTGTTGCGGT+TGG - tig0033146:4004-4023 Msa1450910:CDS 55.0%
GCCGCCCGATGTTGAATCAA+TGG - tig0033146:4038-4057 Msa1450910:CDS 55.0%
! CTGCGGCCTTTTTCTACTGC+AGG - tig0033146:4148-4167 Msa1450910:CDS 55.0%
! GCGGCCTTTTTCTACTGCAG+GGG - tig0033146:4150-4169 Msa1450910:CDS 55.0%
TGCATTTCCTCCTCCTCCAC+CGG - tig0033146:4856-4875 Msa1450910:intron 55.0%
GTACGTCTTCTATCAGCCGG+TGG + tig0033146:4875-4894 Msa1450910:intergenic 55.0%
CCGGTACGTCTTCTATCAGC+CGG + tig0033146:4878-4897 Msa1450910:intergenic 55.0%
CCGGCTGATAGAAGACGTAC+CGG - tig0033146:4875-4894 Msa1450910:intron 55.0%
GGAGACTCTGATGGGGAACT+TGG + tig0033146:5131-5150 Msa1450910:intergenic 55.0%
CGTCCCTTTCTTCCAGAGGA+GGG + tig0033146:5235-5254 Msa1450910:intergenic 55.0%
! GAAGCGTCCCTTTCTTCCAG+AGG + tig0033146:5239-5258 Msa1450910:intergenic 55.0%
GGTTTAGATGTGGCGACTGC+AGG - tig0033146:5550-5569 Msa1450910:CDS 55.0%
! GGACCGGTTCAGACCTGTTT+AGG + tig0033146:6901-6920 Msa1450910:intergenic 55.0%
GGGAACAGCCCAATAAGGAG+AGG + tig0033146:7278-7297 Msa1450910:intergenic 55.0%
ATTTGGGCGCCACAAGAACC+TGG + tig0033146:7376-7395 Msa1450910:intergenic 55.0%
TGTGCAGAGAGATGTGCCTG+TGG - tig0033146:7619-7638 Msa1450910:intron 55.0%
ACCTTCAGGCACATCTGCAG+AGG + tig0033146:7680-7699 Msa1450910:intergenic 55.0%
ACAACAACTGGACGAGGACG+AGG + tig0033146:8571-8590 Msa1450910:intergenic 55.0%
TAGGGAACAGGTGGAAGACG+AGG + tig0033146:8604-8623 Msa1450910:intergenic 55.0%
GGGAGAGGAGATAGGAGATC+AGG - tig0033146:8664-8683 Msa1450910:five_prime_UTR 55.0%
AGTGGGTCCCACTGAGACTC+CGG + tig0033146:2839-2858 Msa1450910:intergenic 60.0%
CTTCTATCAGCCGGTGGAGG+AGG + tig0033146:4869-4888 Msa1450910:intergenic 60.0%
CGTCTTCTATCAGCCGGTGG+AGG + tig0033146:4872-4891 Msa1450910:intergenic 60.0%
CCAAAATCAGAGCCGCCCTC+TGG + tig0033146:5206-5225 Msa1450910:intergenic 60.0%
!! CCAGAGGGCGGCTCTGATTT+TGG - tig0033146:5203-5222 Msa1450910:intron 60.0%
!! GAGGGCGGCTCTGATTTTGG+TGG - tig0033146:5206-5225 Msa1450910:intron 60.0%
GCGTCCCTTTCTTCCAGAGG+AGG + tig0033146:5236-5255 Msa1450910:intergenic 60.0%
TCAAATCCAGTCTGGCGCCC+AGG + tig0033146:5686-5705 Msa1450910:intergenic 60.0%
ACAGGTCTGAACCGGTCCCT+TGG - tig0033146:6903-6922 Msa1450910:CDS 60.0%
CAGGTCTGAACCGGTCCCTT+GGG - tig0033146:6904-6923 Msa1450910:CDS 60.0%
! GGCACATCTGCAGAGGCACA+AGG + tig0033146:7673-7692 Msa1450910:intergenic 60.0%
GCCTCTGCAGATGTGCCTGA+AGG - tig0033146:7676-7695 Msa1450910:intron 60.0%
ACAACTGGACGAGGACGAGG+AGG + tig0033146:8568-8587 Msa1450910:intergenic 60.0%
AAGAATCCTAGGCGCGGGAG+AGG - tig0033146:8649-8668 Msa1450910:five_prime_UTR 60.0%
GACTCCGGGGAAGGGTGAAG+AGG + tig0033146:2824-2843 Msa1450910:intergenic 65.0%
ACCCTTCCCCGGAGTCTCAG+TGG - tig0033146:2828-2847 Msa1450910:CDS 65.0%
CCCACTGAGACTCCGGGGAA+GGG + tig0033146:2832-2851 Msa1450910:intergenic 65.0%
CCCTTCCCCGGAGTCTCAGT+GGG - tig0033146:2829-2848 Msa1450910:CDS 65.0%
TCCCACTGAGACTCCGGGGA+AGG + tig0033146:2833-2852 Msa1450910:intergenic 65.0%
TGGGTCCCACTGAGACTCCG+GGG + tig0033146:2837-2856 Msa1450910:intergenic 65.0%
GTGGGTCCCACTGAGACTCC+GGG + tig0033146:2838-2857 Msa1450910:intergenic 65.0%
CTATCAGCCGGTGGAGGAGG+AGG + tig0033146:4866-4885 Msa1450910:intergenic 65.0%
! GAGCCGCCCTCTGGTTCACT+TGG + tig0033146:5197-5216 Msa1450910:intergenic 65.0%
AGGCAGACTGCAGGGCCTTC+AGG - tig0033146:6831-6850 Msa1450910:CDS 65.0%
ACTGGACGAGGACGAGGAGG+AGG + tig0033146:8565-8584 Msa1450910:intergenic 65.0%
CTATCTCCTCTCCCGCGCCT+AGG + tig0033146:8658-8677 Msa1450910:intergenic 65.0%
CTAGGCGCGGGAGAGGAGAT+AGG - tig0033146:8656-8675 Msa1450910:five_prime_UTR 65.0%
AGCAGACCTGGGCGCCAGAC+TGG - tig0033146:5677-5696 Msa1450910:CDS 70.0%
GGACGAGGAGGAGGAGGAGG+AGG + tig0033146:8556-8575 Msa1450910:intergenic 70.0%
CGAGGACGAGGAGGAGGAGG+AGG + tig0033146:8559-8578 Msa1450910:intergenic 70.0%
GGACGAGGACGAGGAGGAGG+AGG + tig0033146:8562-8581 Msa1450910:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0033146 gene 2652 8904 2652 ID=Msa1450910;Name=Msa1450910
tig0033146 mRNA 2652 8904 2652 ID=Msa1450910-mRNA-1;Parent=Msa1450910;Name=Msa1450910-mRNA-1;_AED=0.08;_eAED=0.08;_QI=482|1|1|1|0.88|0.8|10|160|592
tig0033146 exon 2652 3033 2652 ID=Msa1450910-mRNA-1:exon:17749;Parent=Msa1450910-mRNA-1
tig0033146 exon 3671 3870 3671 ID=Msa1450910-mRNA-1:exon:17748;Parent=Msa1450910-mRNA-1
tig0033146 exon 3989 4179 3989 ID=Msa1450910-mRNA-1:exon:17747;Parent=Msa1450910-mRNA-1
tig0033146 exon 5208 5311 5208 ID=Msa1450910-mRNA-1:exon:17746;Parent=Msa1450910-mRNA-1
tig0033146 exon 5500 5699 5500 ID=Msa1450910-mRNA-1:exon:17745;Parent=Msa1450910-mRNA-1
tig0033146 exon 5783 5892 5783 ID=Msa1450910-mRNA-1:exon:17744;Parent=Msa1450910-mRNA-1
tig0033146 exon 6262 6475 6262 ID=Msa1450910-mRNA-1:exon:17743;Parent=Msa1450910-mRNA-1
tig0033146 exon 6651 6938 6651 ID=Msa1450910-mRNA-1:exon:17742;Parent=Msa1450910-mRNA-1
tig0033146 exon 8153 8801 8153 ID=Msa1450910-mRNA-1:exon:17741;Parent=Msa1450910-mRNA-1
tig0033146 exon 8822 8904 8822 ID=Msa1450910-mRNA-1:exon:17740;Parent=Msa1450910-mRNA-1
tig0033146 five_prime_UTR 8822 8904 8822 ID=Msa1450910-mRNA-1:five_prime_utr;Parent=Msa1450910-mRNA-1
tig0033146 five_prime_UTR 8403 8801 8403 ID=Msa1450910-mRNA-1:five_prime_utr;Parent=Msa1450910-mRNA-1
tig0033146 CDS 8153 8402 8153 ID=Msa1450910-mRNA-1:cds;Parent=Msa1450910-mRNA-1
tig0033146 CDS 6651 6938 6651 ID=Msa1450910-mRNA-1:cds;Parent=Msa1450910-mRNA-1
tig0033146 CDS 6262 6475 6262 ID=Msa1450910-mRNA-1:cds;Parent=Msa1450910-mRNA-1
tig0033146 CDS 5783 5892 5783 ID=Msa1450910-mRNA-1:cds;Parent=Msa1450910-mRNA-1
tig0033146 CDS 5500 5699 5500 ID=Msa1450910-mRNA-1:cds;Parent=Msa1450910-mRNA-1
tig0033146 CDS 5208 5311 5208 ID=Msa1450910-mRNA-1:cds;Parent=Msa1450910-mRNA-1
tig0033146 CDS 3989 4179 3989 ID=Msa1450910-mRNA-1:cds;Parent=Msa1450910-mRNA-1
tig0033146 CDS 3671 3870 3671 ID=Msa1450910-mRNA-1:cds;Parent=Msa1450910-mRNA-1
tig0033146 CDS 2812 3033 2812 ID=Msa1450910-mRNA-1:cds;Parent=Msa1450910-mRNA-1
tig0033146 three_prime_UTR 2652 2811 2652 ID=Msa1450910-mRNA-1:three_prime_utr;Parent=Msa1450910-mRNA-1
Gene Sequence

>Msa1450910

ATGACTGGAGTGTCATTGGGTCTACGAACAGGTAGCTATGGTTCTCTGCAGTTGATTCAAAACGGTAACGTTTCGCAGGTTCCGGTGCTTGTTCGTAGAGCTTCGAAGACGCTCCTTTATAACCCCAAAGAGAAAGAGAGGAGTTGTTTGTATATTTGTCGTCATCTTGGTCGTGGCAAAGTTGCCATGCTTCTCATGCTTCTTTGTGGCCTTTTCATTTTTGTATTTGGCTGCTTTACACTTTACAAAGGTGGAAACATCACCAATGAAATTGAAGATACACGATCTTATGCCCTTAGTACCTATAAAGTTATAGGCGTTGATGGAACAATAGAAACTAAGTTAAAGGATAGTAGTTCTTCTACGTCGTTGACAAGTAGGCATAAAAATTCATTCAGGGAACATCCTGTTTCCCCTTTACGATCTTCATATAATTTGAAAGGAAAAAAAGGATCTTCCTCTACTGTGGGACATCAGTGTGACCATTTTGCATTTCCTCCTCCTCCACCGGCTGATAGAAGACGTACCGGACCACGCCCATGTCCTGTGTGCTATATTCCTGTGGAGCAAGCTATAGCTAGTATGCCAAGTTCCCCATCAGAGTCTCCTGTACTTCGCACTCTCACATATGCGCATAATGAAAATATGTTTCCAAGTGAACCAGAGGGCGGCTCTGATTTTGGTGGATACCCTCCTCTGGAAGAAAGGGACGCTTCTTTTGATATAAAAGAGACCATGAAAGTGCATTGTGGATTTGTAAAAGGAAGCAGACCTGGGCGCCAGACTGGATTTGATTTTGATGAGGAAGACCTCTTAGAGTTGGATCAGTACCATGATATCATTGTTGCATCTGCCATATTTGGAAACTATGATGTAATACAGCAGCCCAGGAACATCAGTAAACAAGCAAGGAAGAACATTCCTTTCTATATGTTCATTGATGAAGAGACAGAAATGTATATGAGAAATGCCAGTATTTTGGATAGCAGGAGGAGAGTTGGATTATGGAGAATCATTGTTGTCCGGAATATTCCATACGCTGATTCTAGGCGTAATGGAAAGATTCCAAAACTTCTTTTGCACAGAATCTTCCCCAACATCCGATATTCAATTTGGATTGATGGGAAGCTTGAGCTCGTTAAAGACCCATATCAAATTCTTGAAAGGTTCTTGTGGCGCCCAAATGCTACTTTTGCCATTTCAAGACACTATAGACGCTTTGATGTCTTTGTCGAGGCAGAGGCTAATAAAGTTGCTGGAAAATATGAGAATGCTTCCATTGATCGCCAAGTTCAATTTTATCAATACCACGATGGTTTAACTCATTATTCCAGGGCTAAGCTTCCTATAACTAGTGATGTGCCTGAAGGTTGTGTTATCATTAGAGAACACATTCCAATTACAAATCTGTTTACCTGCTTATGGTTCAATGAAGTTGACCGCTTTACTTCTAGAGATCAGTTAAGCTTTTCCACGGTAAGAGACAAAATAATGGCAAAAGTTGATTGGAGTATCAATATGTTTCTGGATTGTGAGAGGCGTAACTTTGTAATACAGGCGTACCATAGAGACGTATTGGAGAACATGCCTCCTCCTCCTCCTCCTCGTCCTCGTCCAGTTGTTGTAATTCGGCGTCCTCGTCTTCCACCTGTTCCCTATACTACTAACAAGCCTCTGGTGAAGAAGAATCCTAGGCGCGGGAGAGGAGATAGGAGATCAGGTTCTAAGCGTCATCGTAAAATAGTAGACAATGTTGTTATGAACCAAATTTTATTTTAG
Protein sequence

>Msa1450910

MTGVSLGLRTGSYGSLQLIQNGNVSQVPVLVRRASKTLLYNPKEKERSCLYICRHLGRGKVAMLLMLLCGLFIFVFGCFTLYKGGNITNEIEDTRSYALSTYKVIGVDGTIETKLKDSSSSTSLTSRHKNSFREHPVSPLRSSYNLKGKKGSSSTVGHQCDHFAFPPPPPADRRRTGPRPCPVCYIPVEQAIASMPSSPSESPVLRTLTYAHNENMFPSEPEGGSDFGGYPPLEERDASFDIKETMKVHCGFVKGSRPGRQTGFDFDEEDLLELDQYHDIIVASAIFGNYDVIQQPRNISKQARKNIPFYMFIDEETEMYMRNASILDSRRRVGLWRIIVVRNIPYADSRRNGKIPKLLLHRIFPNIRYSIWIDGKLELVKDPYQILERFLWRPNATFAISRHYRRFDVFVEAEANKVAGKYENASIDRQVQFYQYHDGLTHYSRAKLPITSDVPEGCVIIREHIPITNLFTCLWFNEVDRFTSRDQLSFSTVRDKIMAKVDWSINMFLDCERRNFVIQAYHRDVLENMPPPPPPRPRPVVVIRRPRLPPVPYTTNKPLVKKNPRRGRGDRRSGSKRHRKIVDNVVMNQILF*