AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1451010


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451010 MtrunA17_Chr8g0389631 92.157 357 1 1 1 330 1 357 0.0 662
Msa1451010 MtrunA17_Chr6g0487421 78.632 351 47 2 7 330 4 353 0.0 569
Msa1451010 MtrunA17_Chr3g0140611 75.493 355 59 2 3 330 4 357 0.0 551
Msa1451010 MtrunA17_Chr2g0330871 71.471 340 70 1 18 330 18 357 1.07e-174 492
Msa1451010 MtrunA17_Chr1g0196891 65.689 341 89 2 17 330 84 423 7.53e-161 460
Msa1451010 MtrunA17_Chr4g0076591 44.706 340 133 6 20 330 27 340 2.02e-89 274
Msa1451010 MtrunA17_Chr8g0367681 42.424 363 147 9 23 330 78 433 6.95e-83 260
Msa1451010 MtrunA17_Chr5g0412481 46.809 282 115 4 78 330 162 437 6.15e-77 245
Msa1451010 MtrunA17_Chr4g0075371 25.676 222 154 4 89 303 95 312 8.85e-12 65.9
Msa1451010 MtrunA17_Chr2g0289271 25.909 220 152 4 91 303 93 308 1.02e-11 65.9
Msa1451010 MtrunA17_Chr1g0162751 26.172 256 173 6 75 320 67 316 3.27e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451010 AT4G26270.1 75.070 357 61 2 1 330 1 356 0.0 545
Msa1451010 AT5G56630.1 73.389 357 66 2 1 330 1 355 0.0 527
Msa1451010 AT4G29220.1 71.831 355 73 1 3 330 4 358 0.0 519
Msa1451010 AT4G32840.1 71.839 348 67 2 10 330 11 354 0.0 508
Msa1451010 AT5G61580.2 65.982 341 88 2 17 330 68 407 4.18e-165 471
Msa1451010 AT5G61580.1 65.982 341 88 2 17 330 68 407 4.22e-165 471
Msa1451010 AT5G47810.1 48.810 336 136 4 30 330 7 341 3.51e-106 318
Msa1451010 AT2G22480.1 42.308 364 145 9 23 330 87 441 2.70e-82 259
Msa1451010 AT4G04040.1 28.934 197 124 6 81 265 86 278 5.83e-13 70.1
Msa1451010 AT1G12000.1 27.835 194 129 3 81 265 85 276 1.38e-12 68.9

Find 91 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATCAACACCTTCAACTTA+TGG 0.240478 tig0033178:-30198 None:intergenic
CAATTTCAGGTTTATATAAT+AGG 0.242241 tig0033178:+29304 Msa1451010:intron
CATTCAAAGGTATAATATAA+TGG 0.259338 tig0033178:-27295 None:intergenic
CACAAGCAGCAGGATGCTTC+TGG 0.291444 tig0033178:+30139 Msa1451010:CDS
CTGGTCTCAACACCGTTATT+AGG 0.296986 tig0033178:+28810 Msa1451010:CDS
TCAAAGCCTAAAATTGTTAG+AGG 0.297441 tig0033178:+27451 Msa1451010:CDS
TTTCGTCGTAATTATTGAAT+AGG 0.314802 tig0033178:-27364 None:intergenic
ACGCTTATGTATATCATTTA+CGG 0.322834 tig0033178:-29118 None:intergenic
TTCTTCAAGATGTTGGACTA+TGG 0.331798 tig0033178:+30170 Msa1451010:CDS
ACTGCTACTGAGTAGTGATA+TGG 0.334902 tig0033178:+27414 Msa1451010:exon
GAGTGATTCACGAAGGAAAA+AGG 0.335181 tig0033178:-27334 None:intergenic
TATGGCGTCAAGAAAGTATT+AGG 0.339409 tig0033178:+28860 Msa1451010:CDS
CCCTCTTGGACTATCTTTGT+TGG 0.340897 tig0033178:-28617 None:intergenic
GAGAGAAGGCTAAAAGAAAA+TGG 0.369087 tig0033178:+30049 Msa1451010:CDS
AATCAACACCTTCAACTTAT+GGG 0.387680 tig0033178:-30197 None:intergenic
CGACGACGTACTGGTAAATC+TGG 0.393095 tig0033178:-27523 None:intergenic
CCTGCTGCTTGTGCATGGAT+TGG 0.398659 tig0033178:-30129 None:intergenic
ATTCAAAGGTATAATATAAT+GGG 0.400872 tig0033178:-27294 None:intergenic
TTCGTCGTAATTATTGAATA+GGG 0.403548 tig0033178:-27363 None:intergenic
CTTTCTTGACGCCATACATA+TGG 0.405194 tig0033178:-28853 None:intergenic
TGGTCTCAACACCGTTATTA+GGG 0.405636 tig0033178:+28811 Msa1451010:CDS
TAGTTGACAGTATTCAAGAT+AGG 0.412260 tig0033178:+29190 Msa1451010:CDS
AACAAACTTCTTCAAGATGT+TGG 0.415670 tig0033178:+30163 Msa1451010:CDS
CGCCGAAAATGTATCCCTCT+TGG 0.417477 tig0033178:-28631 None:intergenic
AACGATAGATAACGACATTC+CGG 0.425629 tig0033178:+29515 Msa1451010:CDS
TCAAGATAGGGGAATCAATC+AGG 0.434104 tig0033178:+29203 Msa1451010:CDS
GGTCTCAAGGTTGCAGTTGT+AGG 0.434255 tig0033178:+29483 Msa1451010:CDS
CGATGACAGTGTTCCTCAAA+AGG 0.434629 tig0033178:+27869 Msa1451010:CDS
TGGTAAATCTGGAATGTAAT+CGG 0.438642 tig0033178:-27512 None:intergenic
GAAAGTGTTGAAAACGGAAT+AGG 0.440666 tig0033178:+29738 Msa1451010:CDS
AATACTGTCAACTATCTTAG+TGG 0.440922 tig0033178:-29181 None:intergenic
AATAGGTGTTGTCAAGTTGA+TGG 0.445015 tig0033178:+29755 Msa1451010:CDS
TGATGTGAAGGGAGGATACA+AGG 0.450448 tig0033178:+29056 Msa1451010:intron
CGGCTTTGACACAGCTGTTG+AGG 0.452847 tig0033178:+29677 Msa1451010:CDS
TAGGTTATTGACAAGTCCTT+CGG 0.454297 tig0033178:+29657 Msa1451010:intron
GCGTGCCGGACCTCGTCAAA+AGG 0.485746 tig0033178:+28651 Msa1451010:CDS
AACTTACTTGACAACTGAAT+AGG 0.487126 tig0033178:-27735 None:intergenic
CTGCTACTGAGTAGTGATAT+GGG 0.487486 tig0033178:+27415 Msa1451010:exon
AGTTGACAGTATTCAAGATA+GGG 0.491907 tig0033178:+29191 Msa1451010:CDS
CTAACAAAACGGAGATAGAA+AGG 0.493583 tig0033178:-27389 None:intergenic
GTTATTAGGGAGTTAGTATG+TGG 0.496614 tig0033178:+28824 Msa1451010:CDS
AAGCGTGGCGGAACTATCCT+TGG 0.501773 tig0033178:+29135 Msa1451010:CDS
AGCATCCTGCTGCTTGTGCA+TGG 0.502680 tig0033178:-30134 None:intergenic
TGTGGTTTATACCATATGTA+TGG 0.503323 tig0033178:+28842 Msa1451010:CDS
CCAATCCATGCACAAGCAGC+AGG 0.508389 tig0033178:+30129 Msa1451010:CDS
GATTGCTGAAGGAGCAGGAC+AGG 0.511673 tig0033178:+30087 Msa1451010:CDS
ATGGATATCCCATAAGTTGA+AGG 0.517124 tig0033178:+30189 Msa1451010:CDS
TTTCAGGTTTATATAATAGG+AGG 0.517903 tig0033178:+29307 Msa1451010:intron
ATTGTGATTGCTGAAGGAGC+AGG 0.519189 tig0033178:+30082 Msa1451010:CDS
CGTGAATGTATCACATTCAA+AGG 0.520936 tig0033178:-27308 None:intergenic
GATTAGAAGAAGAGAATGAA+TGG 0.534578 tig0033178:-27269 None:intergenic
GTTTATATAATAGGAGGAGA+TGG 0.543174 tig0033178:+29313 Msa1451010:CDS
ACATACTAACTCCCTAATAA+CGG 0.547174 tig0033178:-28822 None:intergenic
AGGAGGAGATGGAACTCAGA+GGG 0.547255 tig0033178:+29324 Msa1451010:CDS
AAAATTGTTAGAGGCTCCGC+TGG 0.554480 tig0033178:+27460 Msa1451010:CDS
AATTAGAAACCGTGGTCTCA+AGG 0.554898 tig0033178:+29470 Msa1451010:CDS
CTAATAACGGTGTTGAGACC+AGG 0.555952 tig0033178:-28809 None:intergenic
ACATGTGGAGGTTTATGTCC+TGG 0.556306 tig0033178:+28791 Msa1451010:CDS
TAGGCAGGATTGTCTTGCAA+TGG 0.561212 tig0033178:-27716 None:intergenic
CTTTGACACAGCTGTTGAGG+AGG 0.569026 tig0033178:+29680 Msa1451010:CDS
GCCAACAAAGATAGTCCAAG+AGG 0.569223 tig0033178:+28616 Msa1451010:CDS
ATAGGTGTTGTCAAGTTGAT+GGG 0.573864 tig0033178:+29756 Msa1451010:CDS
GGAATGTAATCGGTTAAATG+AGG 0.576489 tig0033178:-27502 None:intergenic
CAGGAAACTTACCACTGTAT+CGG 0.579399 tig0033178:-29779 None:intergenic
TACTTGACAACTGAATAGGC+AGG 0.587228 tig0033178:-27731 None:intergenic
GATGTGAAGGGAGGATACAA+GGG 0.587856 tig0033178:+29057 Msa1451010:intron
AGTAGCAGTAGCTAACAAAA+CGG 0.590627 tig0033178:-27400 None:intergenic
GAAGCTGAAAGTGTTGAAAA+CGG 0.594450 tig0033178:+29732 Msa1451010:CDS
CAAAGGTATAATATAATGGG+TGG 0.603745 tig0033178:-27291 None:intergenic
GCTGCCATTGTGACATGTGG+AGG 0.605863 tig0033178:+28779 Msa1451010:CDS
AACAGCTGTGTCAAAGCCGA+AGG 0.608023 tig0033178:-29673 None:intergenic
GTCCACCTCGCGATGAACCA+AGG 0.608972 tig0033178:-29152 None:intergenic
TTAAATGAGGAACATCTTCG+AGG 0.616676 tig0033178:-27489 None:intergenic
ATGGTTATTGTGATTGCTGA+AGG 0.618393 tig0033178:+30076 Msa1451010:CDS
CAACTGCAACCTTGAGACCA+CGG 0.620649 tig0033178:-29479 None:intergenic
ACTATCCTTGGTTCATCGCG+AGG 0.625631 tig0033178:+29147 Msa1451010:CDS
GTTGACAGTATTCAAGATAG+GGG 0.630179 tig0033178:+29192 Msa1451010:CDS
GCTAAAAGAAAATGGCCACA+TGG 0.633855 tig0033178:+30057 Msa1451010:CDS
AAGTTGATGGGCCGATACAG+TGG 0.643563 tig0033178:+29768 Msa1451010:CDS
CCAACAAAGATAGTCCAAGA+GGG 0.648453 tig0033178:+28617 Msa1451010:CDS
TAAACCTCCACATGTCACAA+TGG 0.653142 tig0033178:-28783 None:intergenic
CAGGCTGCCATTGTGACATG+TGG 0.653226 tig0033178:+28776 Msa1451010:CDS
ATCCTTGGTTCATCGCGAGG+TGG 0.657168 tig0033178:+29150 Msa1451010:CDS
TCATAGGAAATTAGAAACCG+TGG 0.660254 tig0033178:+29462 Msa1451010:intron
GTAAATGATATACATAAGCG+TGG 0.691593 tig0033178:+29120 Msa1451010:CDS
ATCTTCGAGGATATAACCAG+CGG 0.701644 tig0033178:-27476 None:intergenic
GGAGGAGATGGAACTCAGAG+GGG 0.709597 tig0033178:+29325 Msa1451010:CDS
TAGGAGGAGATGGAACTCAG+AGG 0.715955 tig0033178:+29323 Msa1451010:CDS
GATTAGTGAGTGATTCACGA+AGG 0.719306 tig0033178:-27341 None:intergenic
CAGCAATCACAATAACCATG+TGG 0.741689 tig0033178:-30072 None:intergenic
AATGATATACATAAGCGTGG+CGG 0.746132 tig0033178:+29123 Msa1451010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTATGAATAAAAATAAATT+AGG - tig0033178:27790-27809 None:intergenic 10.0%
!!! GTTATATTTTCTTTTATTTT+GGG + tig0033178:27891-27910 Msa1451010:intron 10.0%
!!! TTATATTTTCTTTTATTTTG+GGG + tig0033178:27892-27911 Msa1451010:intron 10.0%
!!! AATTACTATTTTTAATGATT+AGG - tig0033178:28008-28027 None:intergenic 10.0%
!!! ATTCAAAGGTATAATATAAT+GGG - tig0033178:27297-27316 None:intergenic 15.0%
!!! GGTTATATTTTCTTTTATTT+TGG + tig0033178:27890-27909 Msa1451010:intron 15.0%
!!! CATTCAAAGGTATAATATAA+TGG - tig0033178:27298-27317 None:intergenic 20.0%
!!! AAAGAAAATATAACCTTTTG+AGG - tig0033178:27885-27904 None:intergenic 20.0%
!!! TTTATTTTGGGGTAAATTTT+CGG + tig0033178:27903-27922 Msa1451010:intron 20.0%
!! AATAATCTGTTAAACAAAGA+GGG - tig0033178:28596-28615 None:intergenic 20.0%
!! CAGTATAAAATTGTATATTC+AGG + tig0033178:28730-28749 Msa1451010:intron 20.0%
!!! CAATTTCAGGTTTATATAAT+AGG + tig0033178:29304-29323 Msa1451010:intron 20.0%
!!! TTTTGAGGTATTAAACTTTT+AGG + tig0033178:29360-29379 Msa1451010:intron 20.0%
!! AAAAAACAATTTATCCTCAT+AGG + tig0033178:29446-29465 Msa1451010:intron 20.0%
!! TAAAGAAAGCAAATAGAATA+TGG + tig0033178:29875-29894 Msa1451010:intron 20.0%
! TTCGTCGTAATTATTGAATA+GGG - tig0033178:27366-27385 None:intergenic 25.0%
! TTTCGTCGTAATTATTGAAT+AGG - tig0033178:27367-27386 None:intergenic 25.0%
!!! ACAATTTTAGGCTTTGAATT+TGG - tig0033178:27448-27467 None:intergenic 25.0%
!! AATGATACATAAGATTAGCT+AGG - tig0033178:27608-27627 None:intergenic 25.0%
! ATGTTATATACTAATGAAGG+AGG - tig0033178:27968-27987 None:intergenic 25.0%
! TCCTTCATTAGTATATAACA+TGG + tig0033178:27967-27986 Msa1451010:intron 25.0%
! ACCATGTTATATACTAATGA+AGG - tig0033178:27971-27990 None:intergenic 25.0%
! AGAAATTTCTGCATAAACAT+GGG - tig0033178:28100-28119 None:intergenic 25.0%
! TAGAAATTTCTGCATAAACA+TGG - tig0033178:28101-28120 None:intergenic 25.0%
! TTATATAAGATCAGCGTAAT+TGG - tig0033178:28200-28219 None:intergenic 25.0%
! TTAAAATGTATTCATGAACG+TGG + tig0033178:28250-28269 Msa1451010:intron 25.0%
!! TTATGTTGTAAGATCTTTTG+AGG - tig0033178:28460-28479 None:intergenic 25.0%
! CAATAATCTGTTAAACAAAG+AGG - tig0033178:28597-28616 None:intergenic 25.0%
! TAAACAGATAAAATCACACA+TGG - tig0033178:28684-28703 None:intergenic 25.0%
!! ATGTGTGATTTTATCTGTTT+AGG + tig0033178:28683-28702 Msa1451010:intron 25.0%
!! TTTTAAATCAGATGAAGTTC+AGG + tig0033178:28757-28776 Msa1451010:CDS 25.0%
!! TGTATATCATTTACGGTTTT+CGG - tig0033178:29114-29133 None:intergenic 25.0%
! ACGCTTATGTATATCATTTA+CGG - tig0033178:29121-29140 None:intergenic 25.0%
! TATCTGTTCTGATAAATAGA+AGG - tig0033178:29238-29257 None:intergenic 25.0%
! ATATAAATTGGGTCAATTTC+AGG + tig0033178:29291-29310 Msa1451010:intron 25.0%
!!! TTTCAGGTTTATATAATAGG+AGG + tig0033178:29307-29326 Msa1451010:intron 25.0%
!!! TGTTCCTTTTAATTTACTAG+GGG - tig0033178:29848-29867 None:intergenic 25.0%
!!! GTGTTCCTTTTAATTTACTA+GGG - tig0033178:29849-29868 None:intergenic 25.0%
! CTATTTGCTTTCTTTAAATG+AGG - tig0033178:29871-29890 None:intergenic 25.0%
GATTAGAAGAAGAGAATGAA+TGG - tig0033178:27272-27291 None:intergenic 30.0%
! CAAAGGTATAATATAATGGG+TGG - tig0033178:27294-27313 None:intergenic 30.0%
TCAAAGCCTAAAATTGTTAG+AGG + tig0033178:27451-27470 Msa1451010:CDS 30.0%
! TGGTAAATCTGGAATGTAAT+CGG - tig0033178:27515-27534 None:intergenic 30.0%
AACTTACTTGACAACTGAAT+AGG - tig0033178:27738-27757 None:intergenic 30.0%
AAACAAAACATGATATTGCC+AGG + tig0033178:28043-28062 Msa1451010:intron 30.0%
AACAAAACATGATATTGCCA+GGG + tig0033178:28044-28063 Msa1451010:intron 30.0%
!!! AGCATAGGTGTTGTTTTAAT+TGG - tig0033178:28158-28177 None:intergenic 30.0%
!!! AATTTGGTTTTTCACAGCAT+AGG - tig0033178:28173-28192 None:intergenic 30.0%
CAGCGTAATTGGTATAAATT+TGG - tig0033178:28189-28208 None:intergenic 30.0%
AGTTAGTTATGCACAAAGTA+CGG - tig0033178:28324-28343 None:intergenic 30.0%
GCATAACTAACTTCCATAAA+AGG + tig0033178:28332-28351 Msa1451010:intron 30.0%
CTTACAACATAACTTTGTTG+AGG + tig0033178:28468-28487 Msa1451010:intron 30.0%
ACATACTAACTCCCTAATAA+CGG - tig0033178:28825-28844 None:intergenic 30.0%
TGTGGTTTATACCATATGTA+TGG + tig0033178:28842-28861 Msa1451010:CDS 30.0%
! ATTCATTTTCTCCTCTTGTT+TGG + tig0033178:28910-28929 Msa1451010:intron 30.0%
TTGTATGAAATCCAAACAAG+AGG - tig0033178:28924-28943 None:intergenic 30.0%
GTTTGGATTTCATACAATCA+TGG + tig0033178:28927-28946 Msa1451010:intron 30.0%
TTTCATACAATCATGGACAT+AGG + tig0033178:28934-28953 Msa1451010:intron 30.0%
GTAAATGATATACATAAGCG+TGG + tig0033178:29120-29139 Msa1451010:CDS 30.0%
AATACTGTCAACTATCTTAG+TGG - tig0033178:29184-29203 None:intergenic 30.0%
TAGTTGACAGTATTCAAGAT+AGG + tig0033178:29190-29209 Msa1451010:CDS 30.0%
AGTTGACAGTATTCAAGATA+GGG + tig0033178:29191-29210 Msa1451010:CDS 30.0%
TATCACATTGTATACTATGC+AGG + tig0033178:29259-29278 Msa1451010:intron 30.0%
ATTGACCCAATTTATATGTC+TGG - tig0033178:29288-29307 None:intergenic 30.0%
GTTTATATAATAGGAGGAGA+TGG + tig0033178:29313-29332 Msa1451010:CDS 30.0%
!! TGTCGTTATCTATCGTTTTT+GGG - tig0033178:29512-29531 None:intergenic 30.0%
! ATGTCGTTATCTATCGTTTT+TGG - tig0033178:29513-29532 None:intergenic 30.0%
! TACATGTTTTCTGTTGTCTT+TGG + tig0033178:29629-29648 Msa1451010:intron 30.0%
CAATCCCCTAGTAAATTAAA+AGG + tig0033178:29841-29860 Msa1451010:intron 30.0%
!!! GGTGTTCCTTTTAATTTACT+AGG - tig0033178:29850-29869 None:intergenic 30.0%
! AATTAACAGAGCCTAAGTTT+TGG + tig0033178:29906-29925 Msa1451010:intron 30.0%
! ATTAACAGAGCCTAAGTTTT+GGG + tig0033178:29907-29926 Msa1451010:intron 30.0%
! TTTTTGAATATACGGAGAGA+AGG + tig0033178:30035-30054 Msa1451010:CDS 30.0%
AACAAACTTCTTCAAGATGT+TGG + tig0033178:30163-30182 Msa1451010:CDS 30.0%
CGTGAATGTATCACATTCAA+AGG - tig0033178:27311-27330 None:intergenic 35.0%
CTAACAAAACGGAGATAGAA+AGG - tig0033178:27392-27411 None:intergenic 35.0%
AGTAGCAGTAGCTAACAAAA+CGG - tig0033178:27403-27422 None:intergenic 35.0%
TTAAATGAGGAACATCTTCG+AGG - tig0033178:27492-27511 None:intergenic 35.0%
GGAATGTAATCGGTTAAATG+AGG - tig0033178:27505-27524 None:intergenic 35.0%
!! AGAAGAAACAGGTTTTAACC+GGG - tig0033178:27582-27601 None:intergenic 35.0%
!! GAGAAGAAACAGGTTTTAAC+CGG - tig0033178:27583-27602 None:intergenic 35.0%
CTTCCATAAAAGGAACCTAT+CGG + tig0033178:28342-28361 Msa1451010:intron 35.0%
! TCCACGATTTTCTGATAGAA+AGG + tig0033178:28513-28532 Msa1451010:intron 35.0%
ACCTTTCTATCAGAAAATCG+TGG - tig0033178:28517-28536 None:intergenic 35.0%
AAAGGTTCTGTTAAAGTTGC+TGG + tig0033178:28531-28550 Msa1451010:intron 35.0%
GTTATTAGGGAGTTAGTATG+TGG + tig0033178:28824-28843 Msa1451010:CDS 35.0%
!! TATGGCGTCAAGAAAGTATT+AGG + tig0033178:28860-28879 Msa1451010:CDS 35.0%
ATGTTCTGTTGTGATGTGAA+GGG + tig0033178:29045-29064 Msa1451010:intron 35.0%
AATGATATACATAAGCGTGG+CGG + tig0033178:29123-29142 Msa1451010:CDS 35.0%
GTTGACAGTATTCAAGATAG+GGG + tig0033178:29192-29211 Msa1451010:CDS 35.0%
AGGACACCAGACATATAAAT+TGG + tig0033178:29279-29298 Msa1451010:intron 35.0%
GGACACCAGACATATAAATT+GGG + tig0033178:29280-29299 Msa1451010:intron 35.0%
ACGGTTTCTAATTTCCTATG+AGG - tig0033178:29463-29482 None:intergenic 35.0%
TCATAGGAAATTAGAAACCG+TGG + tig0033178:29462-29481 Msa1451010:intron 35.0%
AACGATAGATAACGACATTC+CGG + tig0033178:29515-29534 Msa1451010:CDS 35.0%
GGGGAGGTAAAAATAATTAC+CGG - tig0033178:29537-29556 None:intergenic 35.0%
!! TTGAGTTGGAATCCACAAAT+AGG - tig0033178:29564-29583 None:intergenic 35.0%
! TCTGTTGTCTTTGGCTTAAT+AGG + tig0033178:29638-29657 Msa1451010:intron 35.0%
TAGGTTATTGACAAGTCCTT+CGG + tig0033178:29657-29676 Msa1451010:intron 35.0%
!! GAAGCTGAAAGTGTTGAAAA+CGG + tig0033178:29732-29751 Msa1451010:CDS 35.0%
!! GAAAGTGTTGAAAACGGAAT+AGG + tig0033178:29738-29757 Msa1451010:CDS 35.0%
!! AATAGGTGTTGTCAAGTTGA+TGG + tig0033178:29755-29774 Msa1451010:CDS 35.0%
!! ATAGGTGTTGTCAAGTTGAT+GGG + tig0033178:29756-29775 Msa1451010:CDS 35.0%
! AGGCGGTCTTTTTGAATATA+CGG + tig0033178:30027-30046 Msa1451010:CDS 35.0%
GAGAGAAGGCTAAAAGAAAA+TGG + tig0033178:30049-30068 Msa1451010:CDS 35.0%
ATGGTTATTGTGATTGCTGA+AGG + tig0033178:30076-30095 Msa1451010:CDS 35.0%
TTCTTCAAGATGTTGGACTA+TGG + tig0033178:30170-30189 Msa1451010:CDS 35.0%
GAGTGATTCACGAAGGAAAA+AGG - tig0033178:27337-27356 None:intergenic 40.0%
GATTAGTGAGTGATTCACGA+AGG - tig0033178:27344-27363 None:intergenic 40.0%
ACTGCTACTGAGTAGTGATA+TGG + tig0033178:27414-27433 Msa1451010:exon 40.0%
CTGCTACTGAGTAGTGATAT+GGG + tig0033178:27415-27434 Msa1451010:exon 40.0%
ATCTTCGAGGATATAACCAG+CGG - tig0033178:27479-27498 None:intergenic 40.0%
TAGCTAGGTAGAGAAGAAAC+AGG - tig0033178:27593-27612 None:intergenic 40.0%
TACTTGACAACTGAATAGGC+AGG - tig0033178:27734-27753 None:intergenic 40.0%
GATATGCACGAAATATTGCC+TGG - tig0033178:27850-27869 None:intergenic 40.0%
AGATACGTCAGCTCAGTTAA+TGG - tig0033178:28070-28089 None:intergenic 40.0%
TCTGCATAAACATGGGATTG+TGG - tig0033178:28093-28112 None:intergenic 40.0%
! TAGCCGATAGGTTCCTTTTA+TGG - tig0033178:28348-28367 None:intergenic 40.0%
! AAAAGGAACCTATCGGCTAT+CGG + tig0033178:28349-28368 Msa1451010:intron 40.0%
! GACAATGCAAGTTGAAACAG+CGG + tig0033178:28490-28509 Msa1451010:intron 40.0%
CCAACAAAGATAGTCCAAGA+GGG + tig0033178:28617-28636 Msa1451010:CDS 40.0%
! GTCCAAGAGGGATACATTTT+CGG + tig0033178:28629-28648 Msa1451010:CDS 40.0%
GTCGTAAAATAAGCACACGA+AGG - tig0033178:28711-28730 None:intergenic 40.0%
TAAACCTCCACATGTCACAA+TGG - tig0033178:28786-28805 None:intergenic 40.0%
TGGTCTCAACACCGTTATTA+GGG + tig0033178:28811-28830 Msa1451010:CDS 40.0%
CTTTCTTGACGCCATACATA+TGG - tig0033178:28856-28875 None:intergenic 40.0%
GATGTTCTGTTGTGATGTGA+AGG + tig0033178:29044-29063 Msa1451010:intron 40.0%
TCAAGATAGGGGAATCAATC+AGG + tig0033178:29203-29222 Msa1451010:CDS 40.0%
! GGGCGCTTATAGAATTTTTG+AGG + tig0033178:29345-29364 Msa1451010:CDS 40.0%
AATTAGAAACCGTGGTCTCA+AGG + tig0033178:29470-29489 Msa1451010:CDS 40.0%
GAATCCACAAATAGGAAGAG+GGG - tig0033178:29556-29575 None:intergenic 40.0%
GGAATCCACAAATAGGAAGA+GGG - tig0033178:29557-29576 None:intergenic 40.0%
TGGAATCCACAAATAGGAAG+AGG - tig0033178:29558-29577 None:intergenic 40.0%
CAGGTTTGAACTGTTTGAGT+TGG - tig0033178:29578-29597 None:intergenic 40.0%
TTTCCTACTACCAGTTAGCA+TGG + tig0033178:29598-29617 Msa1451010:intron 40.0%
TACAAGTCAACCATGCTAAC+TGG - tig0033178:29611-29630 None:intergenic 40.0%
CAGGAAACTTACCACTGTAT+CGG - tig0033178:29782-29801 None:intergenic 40.0%
! TGTGGACTGTTGCTTAATTC+CGG + tig0033178:29979-29998 Msa1451010:intron 40.0%
GTATATTCAAAAAGACCGCC+TGG - tig0033178:30028-30047 None:intergenic 40.0%
GCTAAAAGAAAATGGCCACA+TGG + tig0033178:30057-30076 Msa1451010:CDS 40.0%
CAGCAATCACAATAACCATG+TGG - tig0033178:30075-30094 None:intergenic 40.0%
! GCGGAGCCTCTAACAATTTT+AGG - tig0033178:27460-27479 None:intergenic 45.0%
AAAATTGTTAGAGGCTCCGC+TGG + tig0033178:27460-27479 Msa1451010:CDS 45.0%
GAATTAGAACGACGACGTAC+TGG - tig0033178:27535-27554 None:intergenic 45.0%
! CTATGCTTTTCTCTTACGCC+CGG + tig0033178:27561-27580 Msa1451010:intron 45.0%
TAGGCAGGATTGTCTTGCAA+TGG - tig0033178:27719-27738 None:intergenic 45.0%
TTAATTTCCTCCCTCTTGCC+AGG + tig0033178:27829-27848 Msa1451010:intron 45.0%
CGAAATATTGCCTGGCAAGA+GGG - tig0033178:27842-27861 None:intergenic 45.0%
ACGAAATATTGCCTGGCAAG+AGG - tig0033178:27843-27862 None:intergenic 45.0%
CGATGACAGTGTTCCTCAAA+AGG + tig0033178:27869-27888 Msa1451010:CDS 45.0%
CTTTATCAGCCGAAGAACGT+TGG - tig0033178:28280-28299 None:intergenic 45.0%
CAACGTTCTTCGGCTGATAA+AGG + tig0033178:28278-28297 Msa1451010:intron 45.0%
GCCAACAAAGATAGTCCAAG+AGG + tig0033178:28616-28635 Msa1451010:CDS 45.0%
CCCTCTTGGACTATCTTTGT+TGG - tig0033178:28620-28639 None:intergenic 45.0%
ACATGTGGAGGTTTATGTCC+TGG + tig0033178:28791-28810 Msa1451010:CDS 45.0%
! CTAATAACGGTGTTGAGACC+AGG - tig0033178:28812-28831 None:intergenic 45.0%
CTGGTCTCAACACCGTTATT+AGG + tig0033178:28810-28829 Msa1451010:CDS 45.0%
TTCTGTTGTGATGTGAAGGG+AGG + tig0033178:29048-29067 Msa1451010:intron 45.0%
TGATGTGAAGGGAGGATACA+AGG + tig0033178:29056-29075 Msa1451010:intron 45.0%
GATGTGAAGGGAGGATACAA+GGG + tig0033178:29057-29076 Msa1451010:intron 45.0%
GCTAACTGGTAGTAGGAAAC+AGG - tig0033178:29597-29616 None:intergenic 45.0%
CAACCATGCTAACTGGTAGT+AGG - tig0033178:29604-29623 None:intergenic 45.0%
!! TGGAGGCATTACAAGCAATC+AGG - tig0033178:29801-29820 None:intergenic 45.0%
!! TCAAGGAAAAAGGGTGTCTC+CGG - tig0033178:30001-30020 None:intergenic 45.0%
! GAGACACCCTTTTTCCTTGA+AGG + tig0033178:30001-30020 Msa1451010:intron 45.0%
CCTGGACCTTCAAGGAAAAA+GGG - tig0033178:30010-30029 None:intergenic 45.0%
! TTTTTCCTTGAAGGTCCAGG+CGG + tig0033178:30010-30029 Msa1451010:intron 45.0%
ATTGTGATTGCTGAAGGAGC+AGG + tig0033178:30082-30101 Msa1451010:CDS 45.0%
! CGACGACGTACTGGTAAATC+TGG - tig0033178:27526-27545 None:intergenic 50.0%
AATATTGCCTGGCAAGAGGG+AGG - tig0033178:27839-27858 None:intergenic 50.0%
CGTGGCAAACCAACGTTCTT+CGG + tig0033178:28268-28287 Msa1451010:intron 50.0%
CGCCGAAAATGTATCCCTCT+TGG - tig0033178:28634-28653 None:intergenic 50.0%
! TGGAACCACACCTTTTGACG+AGG - tig0033178:28664-28683 None:intergenic 50.0%
ACTATCCTTGGTTCATCGCG+AGG + tig0033178:29147-29166 Msa1451010:CDS 50.0%
TAGGAGGAGATGGAACTCAG+AGG + tig0033178:29323-29342 Msa1451010:CDS 50.0%
AGGAGGAGATGGAACTCAGA+GGG + tig0033178:29324-29343 Msa1451010:CDS 50.0%
CAACTGCAACCTTGAGACCA+CGG - tig0033178:29482-29501 None:intergenic 50.0%
GGTCTCAAGGTTGCAGTTGT+AGG + tig0033178:29483-29502 Msa1451010:CDS 50.0%
ACCTCCCCTCTTCCTATTTG+TGG + tig0033178:29549-29568 Msa1451010:intron 50.0%
TCCACAAATAGGAAGAGGGG+AGG - tig0033178:29553-29572 None:intergenic 50.0%
AACAGCTGTGTCAAAGCCGA+AGG - tig0033178:29676-29695 None:intergenic 50.0%
CTTTGACACAGCTGTTGAGG+AGG + tig0033178:29680-29699 Msa1451010:CDS 50.0%
!! AAGTTGATGGGCCGATACAG+TGG + tig0033178:29768-29787 Msa1451010:CDS 50.0%
TGTATGCCACCCTTGCGAAT+CGG + tig0033178:29954-29973 Msa1451010:intron 50.0%
! CCCTTTTTCCTTGAAGGTCC+AGG + tig0033178:30007-30026 Msa1451010:intron 50.0%
GCCTGGACCTTCAAGGAAAA+AGG - tig0033178:30011-30030 None:intergenic 50.0%
GTCAGCTCAGTTAATGGCCC+TGG - tig0033178:28064-28083 None:intergenic 55.0%
! GGAACCTATCGGCTATCGGA+CGG + tig0033178:28353-28372 Msa1451010:intron 55.0%
GTTTCCGTCCGATAGCCGAT+AGG - tig0033178:28360-28379 None:intergenic 55.0%
! GGGATACATTTTCGGCGTGC+CGG + tig0033178:28637-28656 Msa1451010:CDS 55.0%
! CCACACCTTTTGACGAGGTC+CGG - tig0033178:28659-28678 None:intergenic 55.0%
CAGGCTGCCATTGTGACATG+TGG + tig0033178:28776-28795 Msa1451010:CDS 55.0%
GCTGCCATTGTGACATGTGG+AGG + tig0033178:28779-28798 Msa1451010:CDS 55.0%
! AAGCGTGGCGGAACTATCCT+TGG + tig0033178:29135-29154 Msa1451010:CDS 55.0%
ATCCTTGGTTCATCGCGAGG+TGG + tig0033178:29150-29169 Msa1451010:CDS 55.0%
GGAGGAGATGGAACTCAGAG+GGG + tig0033178:29325-29344 Msa1451010:CDS 55.0%
! CGGCTTTGACACAGCTGTTG+AGG + tig0033178:29677-29696 Msa1451010:CDS 55.0%
TTGAAGCACGCGAAGCTGAC+AGG - tig0033178:29824-29843 None:intergenic 55.0%
!!! GAGCCTAAGTTTTGGGCGCA+TGG + tig0033178:29914-29933 Msa1451010:intron 55.0%
GCACCATGCGCCCAAAACTT+AGG - tig0033178:29920-29939 None:intergenic 55.0%
!!! AAGTTTTGGGCGCATGGTGC+AGG + tig0033178:29920-29939 Msa1451010:intron 55.0%
GTATGCCACCCTTGCGAATC+GGG + tig0033178:29955-29974 Msa1451010:intron 55.0%
! GTCCACATCCCGATTCGCAA+GGG - tig0033178:29966-29985 None:intergenic 55.0%
! AGTCCACATCCCGATTCGCA+AGG - tig0033178:29967-29986 None:intergenic 55.0%
AAAGACCGCCTGGACCTTCA+AGG - tig0033178:30018-30037 None:intergenic 55.0%
GATTGCTGAAGGAGCAGGAC+AGG + tig0033178:30087-30106 Msa1451010:CDS 55.0%
! CCTGCTGCTTGTGCATGGAT+TGG - tig0033178:30132-30151 None:intergenic 55.0%
CCAATCCATGCACAAGCAGC+AGG + tig0033178:30129-30148 Msa1451010:CDS 55.0%
! AGCATCCTGCTGCTTGTGCA+TGG - tig0033178:30137-30156 None:intergenic 55.0%
CACAAGCAGCAGGATGCTTC+TGG + tig0033178:30139-30158 Msa1451010:CDS 55.0%
CCGGACCTCGTCAAAAGGTG+TGG + tig0033178:28656-28675 Msa1451010:intron 60.0%
GTCCACCTCGCGATGAACCA+AGG - tig0033178:29155-29174 None:intergenic 60.0%
AAGCACGCGAAGCTGACAGG+TGG - tig0033178:29821-29840 None:intergenic 60.0%
! CACATCCCGATTCGCAAGGG+TGG - tig0033178:29963-29982 None:intergenic 60.0%
CACCCTTGCGAATCGGGATG+TGG + tig0033178:29961-29980 Msa1451010:intron 60.0%
GCGTGCCGGACCTCGTCAAA+AGG + tig0033178:28651-28670 Msa1451010:CDS 65.0%
CACGCGAAGCTGACAGGTGG+AGG - tig0033178:29818-29837 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0033178 gene 27266 30210 27266 ID=Msa1451010;Name=Msa1451010
tig0033178 mRNA 27266 30210 27266 ID=Msa1451010-mRNA-1;Parent=Msa1451010;Name=Msa1451010-mRNA-1;_AED=0.12;_eAED=0.12;_QI=167|0.55|0.4|1|1|1|10|0|330
tig0033178 exon 27266 27534 27266 ID=Msa1451010-mRNA-1:exon:17766;Parent=Msa1451010-mRNA-1
tig0033178 exon 27704 27750 27704 ID=Msa1451010-mRNA-1:exon:17767;Parent=Msa1451010-mRNA-1
tig0033178 exon 27851 27890 27851 ID=Msa1451010-mRNA-1:exon:17768;Parent=Msa1451010-mRNA-1
tig0033178 exon 28610 28672 28610 ID=Msa1451010-mRNA-1:exon:17769;Parent=Msa1451010-mRNA-1
tig0033178 exon 28752 28889 28752 ID=Msa1451010-mRNA-1:exon:17770;Parent=Msa1451010-mRNA-1
tig0033178 exon 29066 29224 29066 ID=Msa1451010-mRNA-1:exon:17771;Parent=Msa1451010-mRNA-1
tig0033178 exon 29313 29366 29313 ID=Msa1451010-mRNA-1:exon:17772;Parent=Msa1451010-mRNA-1
tig0033178 exon 29468 29536 29468 ID=Msa1451010-mRNA-1:exon:17773;Parent=Msa1451010-mRNA-1
tig0033178 exon 29660 29789 29660 ID=Msa1451010-mRNA-1:exon:17774;Parent=Msa1451010-mRNA-1
tig0033178 exon 30023 30210 30023 ID=Msa1451010-mRNA-1:exon:17775;Parent=Msa1451010-mRNA-1
tig0033178 five_prime_UTR 27266 27432 27266 ID=Msa1451010-mRNA-1:five_prime_utr;Parent=Msa1451010-mRNA-1
tig0033178 CDS 27433 27534 27433 ID=Msa1451010-mRNA-1:cds;Parent=Msa1451010-mRNA-1
tig0033178 CDS 27704 27750 27704 ID=Msa1451010-mRNA-1:cds;Parent=Msa1451010-mRNA-1
tig0033178 CDS 27851 27890 27851 ID=Msa1451010-mRNA-1:cds;Parent=Msa1451010-mRNA-1
tig0033178 CDS 28610 28672 28610 ID=Msa1451010-mRNA-1:cds;Parent=Msa1451010-mRNA-1
tig0033178 CDS 28752 28889 28752 ID=Msa1451010-mRNA-1:cds;Parent=Msa1451010-mRNA-1
tig0033178 CDS 29066 29224 29066 ID=Msa1451010-mRNA-1:cds;Parent=Msa1451010-mRNA-1
tig0033178 CDS 29313 29366 29313 ID=Msa1451010-mRNA-1:cds;Parent=Msa1451010-mRNA-1
tig0033178 CDS 29468 29536 29468 ID=Msa1451010-mRNA-1:cds;Parent=Msa1451010-mRNA-1
tig0033178 CDS 29660 29789 29660 ID=Msa1451010-mRNA-1:cds;Parent=Msa1451010-mRNA-1
tig0033178 CDS 30023 30210 30023 ID=Msa1451010-mRNA-1:cds;Parent=Msa1451010-mRNA-1
Gene Sequence

>Msa1451010

ATGGGTTCTTCTCCAAATTCAAAGCCTAAAATTGTTAGAGGCTCCGCTGGTTATATCCTCGAAGATGTTCCTCATTTAACCGATTACATTCCAGATTTACCAACATATTCTAATCCATTGCAAGACAATCCTGCCTATTCAGTTGTCAAGCAATATTTCGTGCATATCGATGACAGTGTTCCTCAAAAGATTATTGCCAACAAAGATAGTCCAAGAGGGATACATTTTCGGCGTGCCGGACCTCGTCAAAAGGTGTATTTTAAATCAGATGAAGTTCAGGCTGCCATTGTGACATGTGGAGGTTTATGTCCTGGTCTCAACACCGTTATTAGGGAGTTAGTATGTGGTTTATACCATATGTATGGCGTCAAGAAAGTATTAGGAATCAGTGGAGGATACAAGGGTTTCTATGCTCACAATACAATCTCTCTAACTCCGAAAACCGTAAATGATATACATAAGCGTGGCGGAACTATCCTTGGTTCATCGCGAGGTGGACATGACACCACTAAGATAGTTGACAGTATTCAAGATAGGGGAATCAATCAGGTTTATATAATAGGAGGAGATGGAACTCAGAGGGGCGCTTATAGAATTTTTGAGGAAATTAGAAACCGTGGTCTCAAGGTTGCAGTTGTAGGAATCCCAAAAACGATAGATAACGACATTCCGGTTATTGACAAGTCCTTCGGCTTTGACACAGCTGTTGAGGAGGCTCAAAGAGCTATAAATGCAGCACATGTTGAAGCTGAAAGTGTTGAAAACGGAATAGGTGTTGTCAAGTTGATGGGCCGATACAGTGGTCCAGGCGGTCTTTTTGAATATACGGAGAGAAGGCTAAAAGAAAATGGCCACATGGTTATTGTGATTGCTGAAGGAGCAGGACAGGAACTTGTTACTGAGAGCATCCAATCCATGCACAAGCAGCAGGATGCTTCTGGAAACAAACTTCTTCAAGATGTTGGACTATGGATATCCCATAAGTTGAAG

Protein sequence

>Msa1451010

MGSSPNSKPKIVRGSAGYILEDVPHLTDYIPDLPTYSNPLQDNPAYSVVKQYFVHIDDSVPQKIIANKDSPRGIHFRRAGPRQKVYFKSDEVQAAIVTCGGLCPGLNTVIRELVCGLYHMYGVKKVLGISGGYKGFYAHNTISLTPKTVNDIHKRGGTILGSSRGGHDTTKIVDSIQDRGINQVYIIGGDGTQRGAYRIFEEIRNRGLKVAVVGIPKTIDNDIPVIDKSFGFDTAVEEAQRAINAAHVEAESVENGIGVVKLMGRYSGPGGLFEYTERRLKENGHMVIVIAEGAGQELVTESIQSMHKQQDASGNKLLQDVGLWISHKLK