AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0077930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077930 MtrunA17_Chr1g0188041 95.262 1013 20 1 1 985 1 1013 0.0 1949
Msa0077930 MtrunA17_Chr7g0275961 28.063 1012 648 20 18 977 16 999 2.60e-105 351
Msa0077930 MtrunA17_Chr8g0346441 27.326 1021 664 20 8 977 11 1004 2.17e-101 340
Msa0077930 MtrunA17_Chr1g0166171 68.966 145 44 1 561 705 8 151 1.84e-56 193
Msa0077930 MtrunA17_Chr3g0144071 25.693 794 493 32 258 971 26 802 6.77e-40 159
Msa0077930 MtrunA17_Chr3g0084371 26.457 635 384 18 392 977 231 831 7.98e-36 146
Msa0077930 MtrunA17_Chr1g0166121 71.014 69 20 0 96 164 1 69 5.16e-24 97.4
Msa0077930 MtrunA17_Chr1g0199321 20.678 590 365 15 32 572 31 566 1.68e-13 74.7
Msa0077930 MtrunA17_Chr4g0031431 22.921 493 318 14 91 569 84 528 2.46e-13 74.3
Msa0077930 MtrunA17_Chr7g0275081 38.202 89 55 0 239 327 56 144 1.17e-12 71.6
Msa0077930 MtrunA17_Chr7g0248251 24.183 306 188 7 263 566 276 539 7.10e-11 66.2
Msa0077930 MtrunA17_Chr5g0413681 23.729 295 206 6 47 331 65 350 7.17e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0077930 AT1G76390.1 26.614 759 452 27 264 937 28 766 6.04e-33 137
Msa0077930 AT1G76390.2 26.614 759 452 27 264 937 28 766 6.04e-33 137
Msa0077930 AT1G68940.1 23.164 1062 670 34 35 971 37 1077 1.97e-31 133
Msa0077930 AT1G20780.1 25.931 752 468 28 264 940 26 763 2.91e-31 132
Msa0077930 AT1G20780.2 25.931 752 468 28 264 940 26 763 2.91e-31 132
Msa0077930 AT1G20780.3 25.931 752 468 28 264 940 26 763 2.91e-31 132
Msa0077930 AT1G68940.2 23.106 1043 658 33 35 954 37 1058 1.44e-30 130
Msa0077930 AT1G68940.3 25.000 764 481 27 261 945 246 996 2.82e-28 123
Msa0077930 AT3G54790.3 24.643 280 179 10 70 347 67 316 1.27e-11 69.3
Msa0077930 AT3G54790.1 24.643 280 179 10 70 347 67 316 1.27e-11 69.3
Msa0077930 AT3G54790.2 24.643 280 179 10 70 347 31 280 1.81e-11 68.6
Msa0077930 AT3G52450.1 30.496 141 81 2 265 388 11 151 1.83e-11 68.2
Msa0077930 AT2G23140.1 29.213 178 110 3 154 331 142 303 2.85e-11 68.2
Msa0077930 AT2G23140.2 29.213 178 110 3 154 331 139 300 3.02e-11 68.2
Msa0077930 AT2G23140.4 29.213 178 110 3 154 331 139 300 3.02e-11 68.2
Msa0077930 AT5G42340.1 23.077 299 184 6 263 559 292 546 3.10e-11 67.8
Msa0077930 AT1G24330.1 22.390 728 415 27 26 680 12 662 3.34e-11 67.8
Msa0077930 AT1G24330.2 22.390 728 415 27 26 680 12 662 3.34e-11 67.8

Find 208 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAGAACCTCTTGTGTTTC+TGG 0.059826 1_2:-55038537 None:intergenic
GCAGCAGCTGATGTTCTTAT+TGG 0.181583 1_2:+55037706 Msa0077930:CDS
CTACAAGAGGATTGATTTAT+AGG 0.186849 1_2:+55037558 Msa0077930:five_prime_UTR
GGCAGAAGCTTTAGGACTTT+TGG 0.205522 1_2:+55040881 Msa0077930:CDS
CCTTAGCAGCTTTCCTTCTA+AGG 0.210627 1_2:-55041004 None:intergenic
AAATGCAATGAGACCTTTAT+TGG 0.217381 1_2:+55040827 Msa0077930:CDS
TTGACCGGCAGTAATATTTA+TGG 0.222346 1_2:+55040972 Msa0077930:CDS
CATCTTCACTTCTCTGTCAT+TGG 0.229854 1_2:-55038787 None:intergenic
CTGTTGCAAAACTAGCAATT+TGG 0.235539 1_2:-55039965 None:intergenic
GTTAGTTCTCGTTCGGATTT+TGG 0.239898 1_2:-55040306 None:intergenic
ATCAAAGCTTCTAGCCTTCT+AGG 0.241589 1_2:-55040216 None:intergenic
ACCTCTGCTGAATCGTTTCC+AGG 0.248782 1_2:-55039193 None:intergenic
ATCTGCAATCTCTGGAGTTT+TGG 0.262837 1_2:+55041064 Msa0077930:CDS
CTCTTGAAGCAGATGTTAAA+AGG 0.268785 1_2:+55037842 Msa0077930:CDS
CATTGCTTGAACGTTATTCT+AGG 0.272811 1_2:+55041033 Msa0077930:CDS
AACAAGGATTGGATCTCTAT+TGG 0.289337 1_2:+55038726 Msa0077930:CDS
TCACTTAAGGCAGAAGCTTT+AGG 0.292250 1_2:+55040873 Msa0077930:CDS
CCAACGCTACGTGCTCTTCT+TGG 0.306871 1_2:+55040018 Msa0077930:CDS
TCTTCGATCGATTGTCTTAG+TGG 0.313992 1_2:-55038585 None:intergenic
CCGCATAAACGGAGCTGTTA+TGG 0.327966 1_2:+55038431 Msa0077930:CDS
ACAAGGATTGGATCTCTATT+GGG 0.328260 1_2:+55038727 Msa0077930:CDS
AGAAAGTTTCTCGAGGATTT+CGG 0.337226 1_2:-55039872 None:intergenic
TATCGAGTCACAGCGCGATT+TGG 0.345338 1_2:+55040446 Msa0077930:CDS
AACTACAAAGTTGATTGAAA+TGG 0.346902 1_2:+55040326 Msa0077930:CDS
ACGCTCTCAGTGCACTCTTC+AGG 0.348203 1_2:+55040406 Msa0077930:CDS
TGTTAAAAGGGCGAATAATA+TGG 0.357230 1_2:+55037855 Msa0077930:CDS
AACACTTTCTACATTGGTAT+TGG 0.361873 1_2:+55040764 Msa0077930:CDS
CAGCTATTAGAGCCTGCATT+TGG 0.370250 1_2:-55038692 None:intergenic
TAACAAATCAATTGCTGCCT+TGG 0.372173 1_2:-55039068 None:intergenic
ACAGTTAATATTGTACCTAT+TGG 0.373426 1_2:-55037652 None:intergenic
GTTTCTGATCTCTTAGTCCT+TGG 0.375417 1_2:-55038110 None:intergenic
AAACCAGCAACCGCTTGGTT+TGG 0.375908 1_2:-55040592 None:intergenic
TCAATACTTTGAAAGGGTTC+AGG 0.379007 1_2:+55038350 Msa0077930:CDS
AGGTATTCAACTACTCCTTC+TGG 0.379870 1_2:-55040186 None:intergenic
GACCTTTCTTTATCAGCCTT+GGG 0.385289 1_2:+55039733 Msa0077930:CDS
GGAATTGATTTCTTTGTTGA+TGG 0.386950 1_2:+55039907 Msa0077930:CDS
GGATCATATTATTTCGTGCT+TGG 0.390606 1_2:+55039027 Msa0077930:CDS
AACTAGCAATTTGGTGATGA+TGG 0.392035 1_2:-55039956 None:intergenic
GAACTGGCTCAATATCAAAT+AGG 0.394193 1_2:-55037759 None:intergenic
GTTCCTGTGGAAAGGCTAAC+AGG 0.396841 1_2:-55038459 None:intergenic
AGACCTTTCTTTATCAGCCT+TGG 0.397586 1_2:+55039732 Msa0077930:CDS
TTAGAGCCTGCATTTGGCTC+AGG 0.401778 1_2:-55038686 None:intergenic
CTTTGTAGTTAGTTCTCGTT+CGG 0.401965 1_2:-55040313 None:intergenic
AACATCAAATCTAGAATAAG+AGG 0.405447 1_2:-55039811 None:intergenic
GAAAAGAGTTGGCCAGCATT+AGG 0.407138 1_2:+55038211 Msa0077930:CDS
AGAAGGCTAGAAGCTTTGAT+TGG 0.408094 1_2:+55040219 Msa0077930:CDS
CGCTGTGACTCGATATTTGT+AGG 0.409793 1_2:-55040438 None:intergenic
TTTCCAAACCAAGCGGTTGC+TGG 0.410881 1_2:+55040589 Msa0077930:CDS
AAAATTCTATTAACAAGGAT+TGG 0.412160 1_2:+55038715 Msa0077930:CDS
TGCCAATTGTATCTCTTCTC+TGG 0.415239 1_2:-55037590 None:intergenic
TCTTTCCTTTGCCGCATAAA+CGG 0.416779 1_2:+55038420 Msa0077930:CDS
CTGCTCCAAGAAAACAAATT+CGG 0.420958 1_2:-55038271 None:intergenic
GACTCTAGAGCAACTCTAGC+AGG 0.426038 1_2:-55037820 None:intergenic
AGCTGTAATTCCTTTAGAAC+TGG 0.426952 1_2:-55037775 None:intergenic
CGACAATGATAATGTACAAA+TGG 0.431176 1_2:+55040257 Msa0077930:CDS
GATACCGTTATCTCGATCCT+TGG 0.434218 1_2:+55038759 Msa0077930:CDS
TTAAGAATCAATACTTTGAA+AGG 0.434740 1_2:+55038343 Msa0077930:CDS
ACTACAAAGTTGATTGAAAT+GGG 0.437763 1_2:+55040327 Msa0077930:CDS
AAGGAAATGGTGGAATACTA+TGG 0.438629 1_2:+55040921 Msa0077930:CDS
TGATATTGAGCCAGTTCTAA+AGG 0.439774 1_2:+55037765 Msa0077930:CDS
GGCATTTGCAAGTTCGAGAC+TGG 0.440948 1_2:+55040039 Msa0077930:CDS
CATGAGCAGTTCTCAAGACT+TGG 0.442224 1_2:-55037684 None:intergenic
ATGGAGACGGACACCTTAGA+AGG 0.442619 1_2:+55040991 Msa0077930:CDS
TTGCAAGTTCGAGACTGGTT+TGG 0.450043 1_2:+55040044 Msa0077930:CDS
CTATCATGAGCTGCACATAA+AGG 0.455630 1_2:-55040633 None:intergenic
TCTTCATCATCTGCAATCTC+TGG 0.456840 1_2:+55041056 Msa0077930:CDS
AAGGGATATCGGAAGGTCTC+TGG 0.458262 1_2:+55037957 Msa0077930:CDS
GAGCAAGTTACAAGGGATAT+CGG 0.462903 1_2:+55037946 Msa0077930:CDS
CAAGTCAAAATCTCCAATAA+AGG 0.465556 1_2:-55040840 None:intergenic
CTAGCCTTCTAGGCTTGAAA+AGG 0.472124 1_2:-55040206 None:intergenic
ATTTCTTTGTTGATGGAGAA+GGG 0.472359 1_2:+55039914 Msa0077930:CDS
TCAGCCTTGGGTAAACTAGC+TGG 0.474331 1_2:+55039745 Msa0077930:CDS
TTGGGGTAGTGAGTCACTTA+AGG 0.479262 1_2:+55040860 Msa0077930:CDS
GGTCCTTCACAAGGGTTACA+AGG 0.481227 1_2:-55039171 None:intergenic
CTCTAGAGCTGATGCAGCAA+GGG 0.481825 1_2:+55038308 Msa0077930:CDS
TAGATTTGATGTTCTCTCCT+CGG 0.486570 1_2:+55039821 Msa0077930:CDS
TAAGAATCAATACTTTGAAA+GGG 0.486686 1_2:+55038344 Msa0077930:CDS
TGCAAGGGCAGTTGGCGTGC+CGG 0.487076 1_2:+55038170 Msa0077930:CDS
GGATTGGAACTCATACCAAT+AGG 0.487791 1_2:+55037637 Msa0077930:CDS
CGTTTCCAGGGTCCTTCACA+AGG 0.487815 1_2:-55039180 None:intergenic
TATTGGAAAAGAGAGTTTCA+AGG 0.490061 1_2:+55037723 Msa0077930:CDS
CCTATCTCGGATGGTTCCAC+CGG 0.490488 1_2:-55038189 None:intergenic
ACGAAGGTTGTGACCTGAGT+TGG 0.490630 1_2:-55039992 None:intergenic
GCTATCGAGAATTTCTGATC+AGG 0.493655 1_2:+55038008 Msa0077930:CDS
TTGAGAAAATCAACAAGTAA+AGG 0.494414 1_2:-55040486 None:intergenic
GATGCAAAGGGTTGAGTTCG+AGG 0.494531 1_2:+55038050 Msa0077930:CDS
GTATGTCATTCGCGAAAGCC+TGG 0.495334 1_2:-55038137 None:intergenic
AAGGGAATTATTGCTTCCTC+CGG 0.497226 1_2:+55039781 Msa0077930:CDS
CTAGCTGATCGCATGATTCG+AGG 0.500921 1_2:+55039298 Msa0077930:CDS
CCTTAGAAGGAAAGCTGCTA+AGG 0.501027 1_2:+55041004 Msa0077930:CDS
CTCTGTCATTGGACTTCCCA+AGG 0.507482 1_2:-55038776 None:intergenic
TTGGAAATAACTGTGAGCTT+TGG 0.507616 1_2:-55040573 None:intergenic
GACTACAAGGTGAGATGCAA+AGG 0.508604 1_2:+55038037 Msa0077930:CDS
GAGGAGATTGCAAGGGCAGT+TGG 0.509609 1_2:+55038162 Msa0077930:CDS
TTCCAGAGAAGAGATACAAT+TGG 0.512392 1_2:+55037588 Msa0077930:five_prime_UTR
GATTTCTTTGTTGATGGAGA+AGG 0.512649 1_2:+55039913 Msa0077930:CDS
ATACCGTTATCTCGATCCTT+GGG 0.513686 1_2:+55038760 Msa0077930:CDS
AGCTGGATCTCATGCTAACA+AGG 0.519513 1_2:+55039762 Msa0077930:CDS
TCTACTTGCTAGTTAAATGC+CGG 0.520480 1_2:+55037905 Msa0077930:CDS
CTTCCCAAGGATCGAGATAA+CGG 0.521135 1_2:-55038763 None:intergenic
TACCCAAGGCTGATAAAGAA+AGG 0.521431 1_2:-55039735 None:intergenic
CCTTTGATAGAAATGATGTC+TGG 0.521661 1_2:+55039694 Msa0077930:CDS
TAGAGCCTGCATTTGGCTCA+GGG 0.522213 1_2:-55038685 None:intergenic
AATGTACAAATGGCTGCAGC+TGG 0.523529 1_2:+55040267 Msa0077930:CDS
AGGACTAAGAGATCAGAAAC+AGG 0.524044 1_2:+55038113 Msa0077930:CDS
TTTGAAACTTCTGTGAGGTA+AGG 0.525655 1_2:+55037220 Msa0077930:five_prime_UTR
CCGGTGGAACCATCCGAGAT+AGG 0.527413 1_2:+55038189 Msa0077930:CDS
TATCATTGTCGTCGTTCTCG+AGG 0.528609 1_2:-55040245 None:intergenic
CGGCAAAGGAAAGAATTAAG+AGG 0.530404 1_2:-55038411 None:intergenic
AGAGATCAGCTATTGAAGGT+TGG 0.530598 1_2:+55038490 Msa0077930:CDS
TTGGAAGCAAATGCTTTACC+TGG 0.532479 1_2:+55040687 Msa0077930:CDS
AATACAAACACTTTCTACAT+TGG 0.535747 1_2:+55040758 Msa0077930:CDS
GCAATTGCAGCAGCTTTCAT+CGG 0.538108 1_2:+55040531 Msa0077930:CDS
TCACTGCTGCTAATTGTGGC+TGG 0.538398 1_2:+55039266 Msa0077930:CDS
TGTGAGAGATCAGCTATTGA+AGG 0.539191 1_2:+55038486 Msa0077930:CDS
GGAATTATTGCTTCCTCCGG+AGG 0.539312 1_2:+55039784 Msa0077930:CDS
TGATGTTCTCTCCTCGGACA+AGG 0.543610 1_2:+55039827 Msa0077930:CDS
CCAGACATCATTTCTATCAA+AGG 0.545276 1_2:-55039694 None:intergenic
AGGAAGTTGAGCAAGTTACA+AGG 0.548285 1_2:+55037938 Msa0077930:CDS
TCTTGAAGCAGATGTTAAAA+GGG 0.550180 1_2:+55037843 Msa0077930:CDS
AAACTTTCTTCTTCTGACGA+TGG 0.550475 1_2:+55039886 Msa0077930:CDS
AGAATCCCTGAGCCAAATGC+AGG 0.550783 1_2:+55038680 Msa0077930:CDS
GATAGAGAGATACGATTCAA+AGG 0.551367 1_2:+55038374 Msa0077930:CDS
GAGTTGCTTCAAGAAAGATC+TGG 0.552357 1_2:+55039094 Msa0077930:CDS
AATTGGCTGAATCACAAGGA+TGG 0.555747 1_2:+55039005 Msa0077930:CDS
GATCCTGTTAGCCTTTCCAC+AGG 0.555922 1_2:+55038456 Msa0077930:CDS
CAGCTCCGTTTATGCGGCAA+AGG 0.557270 1_2:-55038425 None:intergenic
GATAAAGCTGTTACATGGTG+AGG 0.558362 1_2:+55040713 Msa0077930:CDS
GTCTCCATAAATATTACTGC+CGG 0.561473 1_2:-55040976 None:intergenic
CACATGTAGTTCCTGTGGAA+AGG 0.563701 1_2:-55038467 None:intergenic
TTCTCTCAGCATGAACCAGA+AGG 0.565766 1_2:+55040171 Msa0077930:CDS
GTAACCCTTGTGAAGGACCC+TGG 0.565954 1_2:+55039175 Msa0077930:CDS
AGCTGAAAATTCTATTAACA+AGG 0.570382 1_2:+55038710 Msa0077930:CDS
ATTGGCTGAATCACAAGGAT+GGG 0.570651 1_2:+55039006 Msa0077930:CDS
ATTGGAAGAGCATCCGCAGA+GGG 0.571893 1_2:+55040782 Msa0077930:CDS
AAAGGAAAGAATTAAGAGGT+TGG 0.572084 1_2:-55038407 None:intergenic
ACTTTGAAAGATGTTGTAGA+GGG 0.572945 1_2:+55038822 Msa0077930:CDS
CCAAGAAGAGCACGTAGCGT+TGG 0.573594 1_2:-55040018 None:intergenic
GAGTCAGAATCATCAAGAAG+TGG 0.574190 1_2:-55040111 None:intergenic
CAAGGATTGGATCTCTATTG+GGG 0.575873 1_2:+55038728 Msa0077930:CDS
AAAGCAATTCTTGCAGCCAA+TGG 0.577003 1_2:+55040072 Msa0077930:CDS
TTGCTCAACTTCCTCGACAA+TGG 0.577351 1_2:-55037929 None:intergenic
CCTCTGCTGAATCGTTTCCA+GGG 0.579125 1_2:-55039192 None:intergenic
GCTGAGAGAAAAGAAAGAGC+AGG 0.581887 1_2:-55040158 None:intergenic
TGCTTCAAGAAAGATCTGGT+TGG 0.583477 1_2:+55039098 Msa0077930:CDS
ATTTAACTAGCAAGTAGAAA+CGG 0.583722 1_2:-55037900 None:intergenic
GGCAGTAATATTTATGGAGA+CGG 0.583777 1_2:+55040978 Msa0077930:CDS
AGAGAAGAGATACAATTGGC+AGG 0.584067 1_2:+55037592 Msa0077930:five_prime_UTR
TAGAATAAGAGGAACACCTC+CGG 0.584174 1_2:-55039800 None:intergenic
CACTTTGAAAGATGTTGTAG+AGG 0.586417 1_2:+55038821 Msa0077930:CDS
CCATAACAGCTCCGTTTATG+CGG 0.587162 1_2:-55038431 None:intergenic
AAGGGCAGTTGGCGTGCCGG+TGG 0.588235 1_2:+55038173 Msa0077930:CDS
ATTGTCACTGCTGCTAATTG+TGG 0.588383 1_2:+55039262 Msa0077930:CDS
TTGCAACAGAATTCCAACTC+AGG 0.589919 1_2:+55039979 Msa0077930:CDS
TCGCGTTTGATTTGTTTGAC+CGG 0.589935 1_2:+55040957 Msa0077930:CDS
TAACCTTGTAACCCTTGTGA+AGG 0.590842 1_2:+55039168 Msa0077930:CDS
ATCCGAGATAGGAAAAGAGT+TGG 0.592571 1_2:+55038200 Msa0077930:CDS
CGAATCATGCGATCAGCTAG+TGG 0.593637 1_2:-55039295 None:intergenic
AGAGTTGGCCAGCATTAGGA+AGG 0.594767 1_2:+55038215 Msa0077930:CDS
GAGAAATTGGCTGAATCACA+AGG 0.594803 1_2:+55039001 Msa0077930:CDS
GCAGGTTTATAGCAGTCTCT+CGG 0.596490 1_2:-55040140 None:intergenic
ACTACAAGGTGAGATGCAAA+GGG 0.597147 1_2:+55038038 Msa0077930:CDS
GATCAGGTTGATAGACTACA+AGG 0.597370 1_2:+55038024 Msa0077930:CDS
ACATACTTGAGGAGATTGCA+AGG 0.599820 1_2:+55038154 Msa0077930:CDS
CACGTAGCGTTGGCTTACGA+AGG 0.602202 1_2:-55040008 None:intergenic
TCTCTAGAGCTGATGCAGCA+AGG 0.604293 1_2:+55038307 Msa0077930:CDS
TACAGGTTCAATCACTGCAA+AGG 0.608049 1_2:+55040509 Msa0077930:CDS
TTCCAATAGACAAAATGTTG+TGG 0.608354 1_2:-55040670 None:intergenic
CTCACAGAAGTTTCAAACTG+TGG 0.611272 1_2:-55037214 None:intergenic
TCTCTCACATGTAGTTCCTG+TGG 0.611431 1_2:-55038472 None:intergenic
TGGAAACGATTCAGCAGAGG+TGG 0.613714 1_2:+55039195 Msa0077930:CDS
AAGAATTAGAGATACACCAT+TGG 0.614299 1_2:-55040088 None:intergenic
CAACTTCCTCGACAATGGAC+CGG 0.616683 1_2:-55037924 None:intergenic
GGTTTGATAAAGCTGTTACA+TGG 0.619938 1_2:+55040708 Msa0077930:CDS
AAGCAACTCTAACATTTCCA+AGG 0.624995 1_2:+55039051 Msa0077930:CDS
TAAGACAATCGATCGAAGAG+TGG 0.630519 1_2:+55038589 Msa0077930:CDS
AAGAGATCAGAAACAGGACC+AGG 0.632504 1_2:+55038119 Msa0077930:CDS
AGATCCAGCTAGTTTACCCA+AGG 0.633345 1_2:-55039749 None:intergenic
AAGTTACAAGGGATATCGGA+AGG 0.635464 1_2:+55037950 Msa0077930:CDS
TTCTTGAAGATACTAGCTTG+AGG 0.637093 1_2:+55038553 Msa0077930:CDS
GGATTGGATCTCTATTGGGG+AGG 0.641735 1_2:+55038731 Msa0077930:CDS
TGTAACAGCTTTATCAAACC+AGG 0.642306 1_2:-55040705 None:intergenic
CAGAAGAAGAAAGTTTCTCG+AGG 0.644334 1_2:-55039879 None:intergenic
ATTGTTGACAAGTTGAACCA+AGG 0.644614 1_2:+55038093 Msa0077930:CDS
GGAAGTTGAGCAAGTTACAA+GGG 0.644907 1_2:+55037939 Msa0077930:CDS
AACTGATCCAGAAACACAAG+AGG 0.645279 1_2:+55038530 Msa0077930:CDS
AGAGGGGCATGCAAGAAACA+AGG 0.645650 1_2:+55038839 Msa0077930:CDS
CCCTGGAAACGATTCAGCAG+AGG 0.647958 1_2:+55039192 Msa0077930:CDS
TTTCGCGAATGACATACTTG+AGG 0.650871 1_2:+55038143 Msa0077930:CDS
GTTTCCAGGGTCCTTCACAA+GGG 0.658541 1_2:-55039179 None:intergenic
TAAATGCCGGTCCATTGTCG+AGG 0.660709 1_2:+55037918 Msa0077930:CDS
ACAGTTATTTCCAAACCAAG+CGG 0.662952 1_2:+55040582 Msa0077930:CDS
CTTTGAAAGATGTTGTAGAG+GGG 0.675379 1_2:+55038823 Msa0077930:CDS
AATAAGAGGAACACCTCCGG+AGG 0.680566 1_2:-55039797 None:intergenic
GTAATGAATGACCTTGTCCG+AGG 0.681100 1_2:-55039838 None:intergenic
TATGAGTTCCAATCCTACCA+TGG 0.683552 1_2:-55037629 None:intergenic
GCTGGATCTCATGCTAACAA+GGG 0.684666 1_2:+55039763 Msa0077930:CDS
AATAGGTACAATATTAACTG+TGG 0.686641 1_2:+55037654 Msa0077930:CDS
ACAAAGTTGATTGAAATGGG+AGG 0.690277 1_2:+55040330 Msa0077930:CDS
CAGCGCGATTTGGTTAAACG+CGG 0.693546 1_2:+55040456 Msa0077930:CDS
AACAAACGAGCACCCCTCTG+CGG 0.694775 1_2:-55040795 None:intergenic
CACAGTTTGAAACTTCTGTG+AGG 0.697984 1_2:+55037215 Msa0077930:five_prime_UTR
CATACTTGAGGAGATTGCAA+GGG 0.701171 1_2:+55038155 Msa0077930:CDS
CTAGCAAGTAGAAACGGCCA+CGG 0.705648 1_2:-55037894 None:intergenic
GGTGGAATACTATGGAACGA+CGG 0.715990 1_2:+55040929 Msa0077930:CDS
GTTGAGAAGTACAAGAACCG+TGG 0.724475 1_2:+55037877 Msa0077930:CDS
TATTGGAAGAGCATCCGCAG+AGG 0.727150 1_2:+55040781 Msa0077930:CDS
TTGGAAGAGCATCCGCAGAG+GGG 0.744656 1_2:+55040783 Msa0077930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTATTATGTAAAATTATATA+TGG + chr1_2:55037443-55037462 Msa0077930:intron 10.0%
!! AACTATAATTTATCATGCTA+AGG - chr1_2:55037384-55037403 None:intergenic 20.0%
!!! ATGACTTATTCTAGAATTAA+TGG + chr1_2:55037510-55037529 Msa0077930:intron 20.0%
!! TTAAGAATCAATACTTTGAA+AGG + chr1_2:55038343-55038362 Msa0077930:CDS 20.0%
!!! TAAGAATCAATACTTTGAAA+GGG + chr1_2:55038344-55038363 Msa0077930:CDS 20.0%
!!! TCAATTATTGTCTTTTGATA+AGG + chr1_2:55038619-55038638 Msa0077930:CDS 20.0%
!! AAAATTCTATTAACAAGGAT+TGG + chr1_2:55038715-55038734 Msa0077930:CDS 20.0%
!! CATTTGCATAAAAATGTAAT+AGG + chr1_2:55038979-55038998 Msa0077930:intron 20.0%
!! AAAAATGTAATAGGAGAAAT+TGG + chr1_2:55038988-55039007 Msa0077930:intron 20.0%
!!! ATCATAAGCATTTTAAAAAC+AGG + chr1_2:55040363-55040382 Msa0077930:CDS 20.0%
!!! TTATTCTAGAATTAATGGAC+TGG + chr1_2:55037515-55037534 Msa0077930:intron 25.0%
!!! TATTTTTTATGCTCTACAAG+AGG + chr1_2:55037545-55037564 Msa0077930:five_prime_UTR 25.0%
! ACAGTTAATATTGTACCTAT+TGG - chr1_2:55037655-55037674 None:intergenic 25.0%
! AATAGGTACAATATTAACTG+TGG + chr1_2:55037654-55037673 Msa0077930:CDS 25.0%
! ATTTAACTAGCAAGTAGAAA+CGG - chr1_2:55037903-55037922 None:intergenic 25.0%
!! AATTTAACGACAAATTTTCC+CGG - chr1_2:55038650-55038669 None:intergenic 25.0%
! AGCTGAAAATTCTATTAACA+AGG + chr1_2:55038710-55038729 Msa0077930:CDS 25.0%
! GATTTAAACTTGATACAACT+TGG + chr1_2:55039652-55039671 Msa0077930:intron 25.0%
!! AACATCAAATCTAGAATAAG+AGG - chr1_2:55039814-55039833 None:intergenic 25.0%
!! AACTACAAAGTTGATTGAAA+TGG + chr1_2:55040326-55040345 Msa0077930:CDS 25.0%
!! ACTACAAAGTTGATTGAAAT+GGG + chr1_2:55040327-55040346 Msa0077930:CDS 25.0%
!!! CATTTTAAAAACAGGCAAAA+TGG + chr1_2:55040371-55040390 Msa0077930:CDS 25.0%
! TTGAGAAAATCAACAAGTAA+AGG - chr1_2:55040489-55040508 None:intergenic 25.0%
! AATACAAACACTTTCTACAT+TGG + chr1_2:55040758-55040777 Msa0077930:CDS 25.0%
!!! TTTATTGGAGATTTTGACTT+GGG + chr1_2:55040842-55040861 Msa0077930:CDS 25.0%
! CTACAAGAGGATTGATTTAT+AGG + chr1_2:55037558-55037577 Msa0077930:five_prime_UTR 30.0%
! AGGTGTATAGATTTTTACCA+TGG + chr1_2:55037612-55037631 Msa0077930:exon 30.0%
! GTATAGATTTTTACCATGGT+AGG + chr1_2:55037616-55037635 Msa0077930:exon 30.0%
TATTGGAAAAGAGAGTTTCA+AGG + chr1_2:55037723-55037742 Msa0077930:CDS 30.0%
TCTTGAAGCAGATGTTAAAA+GGG + chr1_2:55037843-55037862 Msa0077930:CDS 30.0%
TGTTAAAAGGGCGAATAATA+TGG + chr1_2:55037855-55037874 Msa0077930:CDS 30.0%
!! AAAAGCCGAATTTGTTTTCT+TGG + chr1_2:55038266-55038285 Msa0077930:CDS 30.0%
AAAGGAAAGAATTAAGAGGT+TGG - chr1_2:55038410-55038429 None:intergenic 30.0%
!!! ATTGAAGGTTGGTTTTATGA+TGG + chr1_2:55038501-55038520 Msa0077930:CDS 30.0%
! ACTTTGAAAGATGTTGTAGA+GGG + chr1_2:55038822-55038841 Msa0077930:CDS 30.0%
TCATGAATACTAAATCTCAG+TGG - chr1_2:55038893-55038912 None:intergenic 30.0%
!! CTTATTTCTATAAGCTCATC+CGG + chr1_2:55039424-55039443 Msa0077930:intron 30.0%
!! AGTTGTTTTCATAAGCTATC+CGG - chr1_2:55039446-55039465 None:intergenic 30.0%
ATATAATCTACTATGACCCT+AGG - chr1_2:55039549-55039568 None:intergenic 30.0%
ATCCAACACCAAATTAACTA+TGG - chr1_2:55039632-55039651 None:intergenic 30.0%
AAACTTGATACAACTTGGAA+AGG + chr1_2:55039657-55039676 Msa0077930:intron 30.0%
! GGAATTGATTTCTTTGTTGA+TGG + chr1_2:55039907-55039926 Msa0077930:CDS 30.0%
! ATTTCTTTGTTGATGGAGAA+GGG + chr1_2:55039914-55039933 Msa0077930:CDS 30.0%
AAGAATTAGAGATACACCAT+TGG - chr1_2:55040091-55040110 None:intergenic 30.0%
! CGACAATGATAATGTACAAA+TGG + chr1_2:55040257-55040276 Msa0077930:CDS 30.0%
!!! CTTGTTGATTTTCTCAATAC+AGG + chr1_2:55040492-55040511 Msa0077930:CDS 30.0%
TTCCAATAGACAAAATGTTG+TGG - chr1_2:55040673-55040692 None:intergenic 30.0%
AACACTTTCTACATTGGTAT+TGG + chr1_2:55040764-55040783 Msa0077930:CDS 30.0%
AAATGCAATGAGACCTTTAT+TGG + chr1_2:55040827-55040846 Msa0077930:CDS 30.0%
CAAGTCAAAATCTCCAATAA+AGG - chr1_2:55040843-55040862 None:intergenic 30.0%
!!! CTTTATTGGAGATTTTGACT+TGG + chr1_2:55040841-55040860 Msa0077930:CDS 30.0%
!!! TTATTGGAGATTTTGACTTG+GGG + chr1_2:55040843-55040862 Msa0077930:CDS 30.0%
! TTTGAAACTTCTGTGAGGTA+AGG + chr1_2:55037220-55037239 Msa0077930:five_prime_UTR 35.0%
TGTAACAATCTTGAAGAGAG+TGG - chr1_2:55037254-55037273 None:intergenic 35.0%
TTCCAGAGAAGAGATACAAT+TGG + chr1_2:55037588-55037607 Msa0077930:five_prime_UTR 35.0%
! GATTTTTACCATGGTAGGAT+TGG + chr1_2:55037621-55037640 Msa0077930:exon 35.0%
! GAACTGGCTCAATATCAAAT+AGG - chr1_2:55037762-55037781 None:intergenic 35.0%
! TGATATTGAGCCAGTTCTAA+AGG + chr1_2:55037765-55037784 Msa0077930:CDS 35.0%
!! AGCTGTAATTCCTTTAGAAC+TGG - chr1_2:55037778-55037797 None:intergenic 35.0%
CTCTTGAAGCAGATGTTAAA+AGG + chr1_2:55037842-55037861 Msa0077930:CDS 35.0%
! TCTACTTGCTAGTTAAATGC+CGG + chr1_2:55037905-55037924 Msa0077930:CDS 35.0%
! ATTGTTGACAAGTTGAACCA+AGG + chr1_2:55038093-55038112 Msa0077930:CDS 35.0%
! TTCTTTTTCCTTCCTAATGC+TGG - chr1_2:55038226-55038245 None:intergenic 35.0%
AAAAAGAAGAAGCTGCGAAT+AGG + chr1_2:55038238-55038257 Msa0077930:CDS 35.0%
CTGCTCCAAGAAAACAAATT+CGG - chr1_2:55038274-55038293 None:intergenic 35.0%
! TCAATACTTTGAAAGGGTTC+AGG + chr1_2:55038350-55038369 Msa0077930:CDS 35.0%
GATAGAGAGATACGATTCAA+AGG + chr1_2:55038374-55038393 Msa0077930:CDS 35.0%
! TTCTTGAAGATACTAGCTTG+AGG + chr1_2:55038553-55038572 Msa0077930:CDS 35.0%
! GTCTTTTGATAAGGTCTATC+CGG + chr1_2:55038628-55038647 Msa0077930:CDS 35.0%
! TCTTTTGATAAGGTCTATCC+GGG + chr1_2:55038629-55038648 Msa0077930:CDS 35.0%
AACAAGGATTGGATCTCTAT+TGG + chr1_2:55038726-55038745 Msa0077930:CDS 35.0%
ACAAGGATTGGATCTCTATT+GGG + chr1_2:55038727-55038746 Msa0077930:CDS 35.0%
! CACTTTGAAAGATGTTGTAG+AGG + chr1_2:55038821-55038840 Msa0077930:CDS 35.0%
! CTTTGAAAGATGTTGTAGAG+GGG + chr1_2:55038823-55038842 Msa0077930:CDS 35.0%
GGATCATATTATTTCGTGCT+TGG + chr1_2:55039027-55039046 Msa0077930:CDS 35.0%
AAGCAACTCTAACATTTCCA+AGG + chr1_2:55039051-55039070 Msa0077930:CDS 35.0%
TAACAAATCAATTGCTGCCT+TGG - chr1_2:55039071-55039090 None:intergenic 35.0%
TCACTTATATGTCAAGTCCT+AGG + chr1_2:55039529-55039548 Msa0077930:intron 35.0%
CACTTATATGTCAAGTCCTA+GGG + chr1_2:55039530-55039549 Msa0077930:intron 35.0%
ACCGGATTCAAGAATATCAA+TGG + chr1_2:55039600-55039619 Msa0077930:intron 35.0%
GCCATTGATATTCTTGAATC+CGG - chr1_2:55039604-55039623 None:intergenic 35.0%
GGCAAAAGCCATAGTTAATT+TGG + chr1_2:55039621-55039640 Msa0077930:intron 35.0%
!! AGCCATAGTTAATTTGGTGT+TGG + chr1_2:55039627-55039646 Msa0077930:intron 35.0%
TTGATACAACTTGGAAAGGA+AGG + chr1_2:55039661-55039680 Msa0077930:intron 35.0%
CCAGACATCATTTCTATCAA+AGG - chr1_2:55039697-55039716 None:intergenic 35.0%
CCTTTGATAGAAATGATGTC+TGG + chr1_2:55039694-55039713 Msa0077930:CDS 35.0%
TAGATTTGATGTTCTCTCCT+CGG + chr1_2:55039821-55039840 Msa0077930:CDS 35.0%
AGAAAGTTTCTCGAGGATTT+CGG - chr1_2:55039875-55039894 None:intergenic 35.0%
AAACTTTCTTCTTCTGACGA+TGG + chr1_2:55039886-55039905 Msa0077930:CDS 35.0%
! GATTTCTTTGTTGATGGAGA+AGG + chr1_2:55039913-55039932 Msa0077930:CDS 35.0%
!! AACTAGCAATTTGGTGATGA+TGG - chr1_2:55039959-55039978 None:intergenic 35.0%
CTGTTGCAAAACTAGCAATT+TGG - chr1_2:55039968-55039987 None:intergenic 35.0%
!! AATACCTTTTCAAGCCTAGA+AGG + chr1_2:55040202-55040221 Msa0077930:CDS 35.0%
! CTTTGTAGTTAGTTCTCGTT+CGG - chr1_2:55040316-55040335 None:intergenic 35.0%
! ACAAAGTTGATTGAAATGGG+AGG + chr1_2:55040330-55040349 Msa0077930:CDS 35.0%
TTGGAAATAACTGTGAGCTT+TGG - chr1_2:55040576-55040595 None:intergenic 35.0%
! ACAGTTATTTCCAAACCAAG+CGG + chr1_2:55040582-55040601 Msa0077930:CDS 35.0%
! GACCACAACATTTTGTCTAT+TGG + chr1_2:55040668-55040687 Msa0077930:CDS 35.0%
! TGTAACAGCTTTATCAAACC+AGG - chr1_2:55040708-55040727 None:intergenic 35.0%
GGTTTGATAAAGCTGTTACA+TGG + chr1_2:55040708-55040727 Msa0077930:CDS 35.0%
! GGTTTTTGTGTCAAAGGAAA+TGG + chr1_2:55040908-55040927 Msa0077930:CDS 35.0%
! TTTTGTGTCAAAGGAAATGG+TGG + chr1_2:55040911-55040930 Msa0077930:CDS 35.0%
! AAGGAAATGGTGGAATACTA+TGG + chr1_2:55040921-55040940 Msa0077930:CDS 35.0%
TTGACCGGCAGTAATATTTA+TGG + chr1_2:55040972-55040991 Msa0077930:CDS 35.0%
GTCTCCATAAATATTACTGC+CGG - chr1_2:55040979-55040998 None:intergenic 35.0%
GGCAGTAATATTTATGGAGA+CGG + chr1_2:55040978-55040997 Msa0077930:CDS 35.0%
CATTGCTTGAACGTTATTCT+AGG + chr1_2:55041033-55041052 Msa0077930:CDS 35.0%
CTCACAGAAGTTTCAAACTG+TGG - chr1_2:55037217-55037236 None:intergenic 40.0%
! CACAGTTTGAAACTTCTGTG+AGG + chr1_2:55037215-55037234 Msa0077930:five_prime_UTR 40.0%
TGCCAATTGTATCTCTTCTC+TGG - chr1_2:55037593-55037612 None:intergenic 40.0%
AGAGAAGAGATACAATTGGC+AGG + chr1_2:55037592-55037611 Msa0077930:five_prime_UTR 40.0%
TATGAGTTCCAATCCTACCA+TGG - chr1_2:55037632-55037651 None:intergenic 40.0%
GGATTGGAACTCATACCAAT+AGG + chr1_2:55037637-55037656 Msa0077930:CDS 40.0%
AGGAAGTTGAGCAAGTTACA+AGG + chr1_2:55037938-55037957 Msa0077930:CDS 40.0%
GGAAGTTGAGCAAGTTACAA+GGG + chr1_2:55037939-55037958 Msa0077930:CDS 40.0%
GAGCAAGTTACAAGGGATAT+CGG + chr1_2:55037946-55037965 Msa0077930:CDS 40.0%
AAGTTACAAGGGATATCGGA+AGG + chr1_2:55037950-55037969 Msa0077930:CDS 40.0%
GCTATCGAGAATTTCTGATC+AGG + chr1_2:55038008-55038027 Msa0077930:CDS 40.0%
!! GATCAGGTTGATAGACTACA+AGG + chr1_2:55038024-55038043 Msa0077930:CDS 40.0%
ACTACAAGGTGAGATGCAAA+GGG + chr1_2:55038038-55038057 Msa0077930:CDS 40.0%
GTTTCTGATCTCTTAGTCCT+TGG - chr1_2:55038113-55038132 None:intergenic 40.0%
AGGACTAAGAGATCAGAAAC+AGG + chr1_2:55038113-55038132 Msa0077930:CDS 40.0%
TTTCGCGAATGACATACTTG+AGG + chr1_2:55038143-55038162 Msa0077930:CDS 40.0%
ACATACTTGAGGAGATTGCA+AGG + chr1_2:55038154-55038173 Msa0077930:CDS 40.0%
CATACTTGAGGAGATTGCAA+GGG + chr1_2:55038155-55038174 Msa0077930:CDS 40.0%
! AACTCTTTTCCTATCTCGGA+TGG - chr1_2:55038201-55038220 None:intergenic 40.0%
ATCCGAGATAGGAAAAGAGT+TGG + chr1_2:55038200-55038219 Msa0077930:CDS 40.0%
CGGCAAAGGAAAGAATTAAG+AGG - chr1_2:55038414-55038433 None:intergenic 40.0%
TCTTTCCTTTGCCGCATAAA+CGG + chr1_2:55038420-55038439 Msa0077930:CDS 40.0%
TGTGAGAGATCAGCTATTGA+AGG + chr1_2:55038486-55038505 Msa0077930:CDS 40.0%
AGAGATCAGCTATTGAAGGT+TGG + chr1_2:55038490-55038509 Msa0077930:CDS 40.0%
AACTGATCCAGAAACACAAG+AGG + chr1_2:55038530-55038549 Msa0077930:CDS 40.0%
TCAAGAACCTCTTGTGTTTC+TGG - chr1_2:55038540-55038559 None:intergenic 40.0%
TCTTCGATCGATTGTCTTAG+TGG - chr1_2:55038588-55038607 None:intergenic 40.0%
TAAGACAATCGATCGAAGAG+TGG + chr1_2:55038589-55038608 Msa0077930:CDS 40.0%
CAAGGATTGGATCTCTATTG+GGG + chr1_2:55038728-55038747 Msa0077930:CDS 40.0%
ATACCGTTATCTCGATCCTT+GGG + chr1_2:55038760-55038779 Msa0077930:CDS 40.0%
CATCTTCACTTCTCTGTCAT+TGG - chr1_2:55038790-55038809 None:intergenic 40.0%
ATATGTCAAACCTGCAATCG+CGG + chr1_2:55038937-55038956 Msa0077930:intron 40.0%
GAGAAATTGGCTGAATCACA+AGG + chr1_2:55039001-55039020 Msa0077930:CDS 40.0%
AATTGGCTGAATCACAAGGA+TGG + chr1_2:55039005-55039024 Msa0077930:CDS 40.0%
ATTGGCTGAATCACAAGGAT+GGG + chr1_2:55039006-55039025 Msa0077930:CDS 40.0%
GAGTTGCTTCAAGAAAGATC+TGG + chr1_2:55039094-55039113 Msa0077930:CDS 40.0%
TGCTTCAAGAAAGATCTGGT+TGG + chr1_2:55039098-55039117 Msa0077930:CDS 40.0%
TAACCTTGTAACCCTTGTGA+AGG + chr1_2:55039168-55039187 Msa0077930:CDS 40.0%
! GGTGGCGAAGAAAATTTTGA+TGG + chr1_2:55039213-55039232 Msa0077930:CDS 40.0%
ATTGTCACTGCTGCTAATTG+TGG + chr1_2:55039262-55039281 Msa0077930:CDS 40.0%
AGACCTTTCTTTATCAGCCT+TGG + chr1_2:55039732-55039751 Msa0077930:CDS 40.0%
GACCTTTCTTTATCAGCCTT+GGG + chr1_2:55039733-55039752 Msa0077930:CDS 40.0%
TACCCAAGGCTGATAAAGAA+AGG - chr1_2:55039738-55039757 None:intergenic 40.0%
AAGGGAATTATTGCTTCCTC+CGG + chr1_2:55039781-55039800 Msa0077930:CDS 40.0%
TAGAATAAGAGGAACACCTC+CGG - chr1_2:55039803-55039822 None:intergenic 40.0%
CAGAAGAAGAAAGTTTCTCG+AGG - chr1_2:55039882-55039901 None:intergenic 40.0%
TTGCAACAGAATTCCAACTC+AGG + chr1_2:55039979-55039998 Msa0077930:CDS 40.0%
AAAGCAATTCTTGCAGCCAA+TGG + chr1_2:55040072-55040091 Msa0077930:CDS 40.0%
GAGTCAGAATCATCAAGAAG+TGG - chr1_2:55040114-55040133 None:intergenic 40.0%
AGGTATTCAACTACTCCTTC+TGG - chr1_2:55040189-55040208 None:intergenic 40.0%
! ATCAAAGCTTCTAGCCTTCT+AGG - chr1_2:55040219-55040238 None:intergenic 40.0%
! AGAAGGCTAGAAGCTTTGAT+TGG + chr1_2:55040219-55040238 Msa0077930:CDS 40.0%
!! GTTAGTTCTCGTTCGGATTT+TGG - chr1_2:55040309-55040328 None:intergenic 40.0%
TACAGGTTCAATCACTGCAA+AGG + chr1_2:55040509-55040528 Msa0077930:CDS 40.0%
CTATCATGAGCTGCACATAA+AGG - chr1_2:55040636-55040655 None:intergenic 40.0%
TTGGAAGCAAATGCTTTACC+TGG + chr1_2:55040687-55040706 Msa0077930:CDS 40.0%
GATAAAGCTGTTACATGGTG+AGG + chr1_2:55040713-55040732 Msa0077930:CDS 40.0%
TCACTTAAGGCAGAAGCTTT+AGG + chr1_2:55040873-55040892 Msa0077930:CDS 40.0%
!!! AGCTTTAGGACTTTTGGAGA+AGG + chr1_2:55040887-55040906 Msa0077930:CDS 40.0%
! GGAGAAGGTTTTTGTGTCAA+AGG + chr1_2:55040902-55040921 Msa0077930:CDS 40.0%
!! TCGCGTTTGATTTGTTTGAC+CGG + chr1_2:55040957-55040976 Msa0077930:CDS 40.0%
TCTTCATCATCTGCAATCTC+TGG + chr1_2:55041056-55041075 Msa0077930:CDS 40.0%
!!! ATCTGCAATCTCTGGAGTTT+TGG + chr1_2:55041064-55041083 Msa0077930:CDS 40.0%
CATGAGCAGTTCTCAAGACT+TGG - chr1_2:55037687-55037706 None:intergenic 45.0%
GCAGCAGCTGATGTTCTTAT+TGG + chr1_2:55037706-55037725 Msa0077930:CDS 45.0%
! GTTGAGAAGTACAAGAACCG+TGG + chr1_2:55037877-55037896 Msa0077930:CDS 45.0%
TTGCTCAACTTCCTCGACAA+TGG - chr1_2:55037932-55037951 None:intergenic 45.0%
GACTACAAGGTGAGATGCAA+AGG + chr1_2:55038037-55038056 Msa0077930:CDS 45.0%
AAGAGATCAGAAACAGGACC+AGG + chr1_2:55038119-55038138 Msa0077930:CDS 45.0%
! GGCCAACTCTTTTCCTATCT+CGG - chr1_2:55038205-55038224 None:intergenic 45.0%
GAAAAGAGTTGGCCAGCATT+AGG + chr1_2:55038211-55038230 Msa0077930:CDS 45.0%
CCATAACAGCTCCGTTTATG+CGG - chr1_2:55038434-55038453 None:intergenic 45.0%
CACATGTAGTTCCTGTGGAA+AGG - chr1_2:55038470-55038489 None:intergenic 45.0%
TCTCTCACATGTAGTTCCTG+TGG - chr1_2:55038475-55038494 None:intergenic 45.0%
CAGCTATTAGAGCCTGCATT+TGG - chr1_2:55038695-55038714 None:intergenic 45.0%
GATACCGTTATCTCGATCCT+TGG + chr1_2:55038759-55038778 Msa0077930:CDS 45.0%
CTTCCCAAGGATCGAGATAA+CGG - chr1_2:55038766-55038785 None:intergenic 45.0%
TATGTCAAACCTGCAATCGC+GGG + chr1_2:55038938-55038957 Msa0077930:intron 45.0%
TCGCATGATTCGAGGTAAGA+AGG + chr1_2:55039306-55039325 Msa0077930:intron 45.0%
ATCCTGCTTCTTCTCTTCTC+AGG + chr1_2:55039577-55039596 Msa0077930:intron 45.0%
! AGATCCAGCTAGTTTACCCA+AGG - chr1_2:55039752-55039771 None:intergenic 45.0%
AGCTGGATCTCATGCTAACA+AGG + chr1_2:55039762-55039781 Msa0077930:CDS 45.0%
GCTGGATCTCATGCTAACAA+GGG + chr1_2:55039763-55039782 Msa0077930:CDS 45.0%
GTAATGAATGACCTTGTCCG+AGG - chr1_2:55039841-55039860 None:intergenic 45.0%
! TTGCAAGTTCGAGACTGGTT+TGG + chr1_2:55040044-55040063 Msa0077930:CDS 45.0%
GCAGGTTTATAGCAGTCTCT+CGG - chr1_2:55040143-55040162 None:intergenic 45.0%
GCTGAGAGAAAAGAAAGAGC+AGG - chr1_2:55040161-55040180 None:intergenic 45.0%
TTCTCTCAGCATGAACCAGA+AGG + chr1_2:55040171-55040190 Msa0077930:CDS 45.0%
! CTAGCCTTCTAGGCTTGAAA+AGG - chr1_2:55040209-55040228 None:intergenic 45.0%
TATCATTGTCGTCGTTCTCG+AGG - chr1_2:55040248-55040267 None:intergenic 45.0%
AATGTACAAATGGCTGCAGC+TGG + chr1_2:55040267-55040286 Msa0077930:CDS 45.0%
!! GTTCTCGTTCGGATTTTGGT+AGG - chr1_2:55040305-55040324 None:intergenic 45.0%
CGCTGTGACTCGATATTTGT+AGG - chr1_2:55040441-55040460 None:intergenic 45.0%
GCAATTGCAGCAGCTTTCAT+CGG + chr1_2:55040531-55040550 Msa0077930:CDS 45.0%
TTGAAAAACCAGCAACCGCT+TGG - chr1_2:55040600-55040619 None:intergenic 45.0%
TTGGGGTAGTGAGTCACTTA+AGG + chr1_2:55040860-55040879 Msa0077930:CDS 45.0%
!!! GGCAGAAGCTTTAGGACTTT+TGG + chr1_2:55040881-55040900 Msa0077930:CDS 45.0%
GGTGGAATACTATGGAACGA+CGG + chr1_2:55040929-55040948 Msa0077930:CDS 45.0%
CCTTAGCAGCTTTCCTTCTA+AGG - chr1_2:55041007-55041026 None:intergenic 45.0%
CCTTAGAAGGAAAGCTGCTA+AGG + chr1_2:55041004-55041023 Msa0077930:CDS 45.0%
!! GACTCTAGAGCAACTCTAGC+AGG - chr1_2:55037823-55037842 None:intergenic 50.0%
CTAGCAAGTAGAAACGGCCA+CGG - chr1_2:55037897-55037916 None:intergenic 50.0%
TAAATGCCGGTCCATTGTCG+AGG + chr1_2:55037918-55037937 Msa0077930:CDS 50.0%
CAACTTCCTCGACAATGGAC+CGG - chr1_2:55037927-55037946 None:intergenic 50.0%
AAGGGATATCGGAAGGTCTC+TGG + chr1_2:55037957-55037976 Msa0077930:CDS 50.0%
GATGCAAAGGGTTGAGTTCG+AGG + chr1_2:55038050-55038069 Msa0077930:CDS 50.0%
GTATGTCATTCGCGAAAGCC+TGG - chr1_2:55038140-55038159 None:intergenic 50.0%
AGAGTTGGCCAGCATTAGGA+AGG + chr1_2:55038215-55038234 Msa0077930:CDS 50.0%
!! TCTCTAGAGCTGATGCAGCA+AGG + chr1_2:55038307-55038326 Msa0077930:CDS 50.0%
!! CTCTAGAGCTGATGCAGCAA+GGG + chr1_2:55038308-55038327 Msa0077930:CDS 50.0%
CCGCATAAACGGAGCTGTTA+TGG + chr1_2:55038431-55038450 Msa0077930:CDS 50.0%
!! GATCCTGTTAGCCTTTCCAC+AGG + chr1_2:55038456-55038475 Msa0077930:CDS 50.0%
GTTCCTGTGGAAAGGCTAAC+AGG - chr1_2:55038462-55038481 None:intergenic 50.0%
AGAATCCCTGAGCCAAATGC+AGG + chr1_2:55038680-55038699 Msa0077930:CDS 50.0%
! TAGAGCCTGCATTTGGCTCA+GGG - chr1_2:55038688-55038707 None:intergenic 50.0%
! TTAGAGCCTGCATTTGGCTC+AGG - chr1_2:55038689-55038708 None:intergenic 50.0%
GGATTGGATCTCTATTGGGG+AGG + chr1_2:55038731-55038750 Msa0077930:CDS 50.0%
CTCTGTCATTGGACTTCCCA+AGG - chr1_2:55038779-55038798 None:intergenic 50.0%
! AGAGGGGCATGCAAGAAACA+AGG + chr1_2:55038839-55038858 Msa0077930:CDS 50.0%
ATGTCAAACCTGCAATCGCG+GGG + chr1_2:55038939-55038958 Msa0077930:intron 50.0%
AAATTAGTCCCCGCGATTGC+AGG - chr1_2:55038950-55038969 None:intergenic 50.0%
GGTCCTTCACAAGGGTTACA+AGG - chr1_2:55039174-55039193 None:intergenic 50.0%
GTTTCCAGGGTCCTTCACAA+GGG - chr1_2:55039182-55039201 None:intergenic 50.0%
CCTCTGCTGAATCGTTTCCA+GGG - chr1_2:55039195-55039214 None:intergenic 50.0%
ACCTCTGCTGAATCGTTTCC+AGG - chr1_2:55039196-55039215 None:intergenic 50.0%
TGGAAACGATTCAGCAGAGG+TGG + chr1_2:55039195-55039214 Msa0077930:CDS 50.0%
TCACTGCTGCTAATTGTGGC+TGG + chr1_2:55039266-55039285 Msa0077930:CDS 50.0%
CGAATCATGCGATCAGCTAG+TGG - chr1_2:55039298-55039317 None:intergenic 50.0%
CTAGCTGATCGCATGATTCG+AGG + chr1_2:55039298-55039317 Msa0077930:CDS 50.0%
GTCCTGAGAAGAGAAGAAGC+AGG - chr1_2:55039582-55039601 None:intergenic 50.0%
GCTTCTTCTCTTCTCAGGAC+CGG + chr1_2:55039582-55039601 Msa0077930:intron 50.0%
TCAGCCTTGGGTAAACTAGC+TGG + chr1_2:55039745-55039764 Msa0077930:CDS 50.0%
GGAATTATTGCTTCCTCCGG+AGG + chr1_2:55039784-55039803 Msa0077930:CDS 50.0%
AATAAGAGGAACACCTCCGG+AGG - chr1_2:55039800-55039819 None:intergenic 50.0%
TGATGTTCTCTCCTCGGACA+AGG + chr1_2:55039827-55039846 Msa0077930:CDS 50.0%
ACGAAGGTTGTGACCTGAGT+TGG - chr1_2:55039995-55040014 None:intergenic 50.0%
GGCATTTGCAAGTTCGAGAC+TGG + chr1_2:55040039-55040058 Msa0077930:CDS 50.0%
TATCGAGTCACAGCGCGATT+TGG + chr1_2:55040446-55040465 Msa0077930:CDS 50.0%
!! CAGCGCGATTTGGTTAAACG+CGG + chr1_2:55040456-55040475 Msa0077930:CDS 50.0%
TTTCCAAACCAAGCGGTTGC+TGG + chr1_2:55040589-55040608 Msa0077930:CDS 50.0%
AAACCAGCAACCGCTTGGTT+TGG - chr1_2:55040595-55040614 None:intergenic 50.0%
!! TATTGGAAGAGCATCCGCAG+AGG + chr1_2:55040781-55040800 Msa0077930:CDS 50.0%
!! ATTGGAAGAGCATCCGCAGA+GGG + chr1_2:55040782-55040801 Msa0077930:CDS 50.0%
ATGGAGACGGACACCTTAGA+AGG + chr1_2:55040991-55041010 Msa0077930:CDS 50.0%
GAGGAGATTGCAAGGGCAGT+TGG + chr1_2:55038162-55038181 Msa0077930:CDS 55.0%
CCTATCTCGGATGGTTCCAC+CGG - chr1_2:55038192-55038211 None:intergenic 55.0%
CAGCTCCGTTTATGCGGCAA+AGG - chr1_2:55038428-55038447 None:intergenic 55.0%
GTAACCCTTGTGAAGGACCC+TGG + chr1_2:55039175-55039194 Msa0077930:CDS 55.0%
CGTTTCCAGGGTCCTTCACA+AGG - chr1_2:55039183-55039202 None:intergenic 55.0%
CCCTGGAAACGATTCAGCAG+AGG + chr1_2:55039192-55039211 Msa0077930:CDS 55.0%
!! CACGTAGCGTTGGCTTACGA+AGG - chr1_2:55040011-55040030 None:intergenic 55.0%
! CCAAGAAGAGCACGTAGCGT+TGG - chr1_2:55040021-55040040 None:intergenic 55.0%
CCAACGCTACGTGCTCTTCT+TGG + chr1_2:55040018-55040037 Msa0077930:CDS 55.0%
ACGCTCTCAGTGCACTCTTC+AGG + chr1_2:55040406-55040425 Msa0077930:CDS 55.0%
!! TTGGAAGAGCATCCGCAGAG+GGG + chr1_2:55040783-55040802 Msa0077930:CDS 55.0%
AACAAACGAGCACCCCTCTG+CGG - chr1_2:55040798-55040817 None:intergenic 55.0%
CCGGTGGAACCATCCGAGAT+AGG + chr1_2:55038189-55038208 Msa0077930:CDS 60.0%
TGCAAGGGCAGTTGGCGTGC+CGG + chr1_2:55038170-55038189 Msa0077930:CDS 65.0%
AAGGGCAGTTGGCGTGCCGG+TGG + chr1_2:55038173-55038192 Msa0077930:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 55037178 55041091 55037178 ID=Msa0077930;Name=Msa0077930
chr1_2 mRNA 55037178 55041091 55037178 ID=Msa0077930-mRNA-1;Parent=Msa0077930;Name=Msa0077930-mRNA-1;_AED=0.08;_eAED=0.08;_QI=152|0.66|0.75|1|0.66|0.5|4|0|985
chr1_2 exon 55037178 55037241 55037178 ID=Msa0077930-mRNA-1:exon:17144;Parent=Msa0077930-mRNA-1
chr1_2 exon 55037543 55038860 55037543 ID=Msa0077930-mRNA-1:exon:17145;Parent=Msa0077930-mRNA-1
chr1_2 exon 55039001 55039319 55039001 ID=Msa0077930-mRNA-1:exon:17146;Parent=Msa0077930-mRNA-1
chr1_2 exon 55039683 55041091 55039683 ID=Msa0077930-mRNA-1:exon:17147;Parent=Msa0077930-mRNA-1
chr1_2 five_prime_UTR 55037178 55037241 55037178 ID=Msa0077930-mRNA-1:five_prime_utr;Parent=Msa0077930-mRNA-1
chr1_2 five_prime_UTR 55037543 55037630 55037543 ID=Msa0077930-mRNA-1:five_prime_utr;Parent=Msa0077930-mRNA-1
chr1_2 CDS 55037631 55038860 55037631 ID=Msa0077930-mRNA-1:cds;Parent=Msa0077930-mRNA-1
chr1_2 CDS 55039001 55039319 55039001 ID=Msa0077930-mRNA-1:cds;Parent=Msa0077930-mRNA-1
chr1_2 CDS 55039683 55041091 55039683 ID=Msa0077930-mRNA-1:cds;Parent=Msa0077930-mRNA-1
Gene Sequence

>Msa0077930

ATGGTAGGATTGGAACTCATACCAATAGGTACAATATTAACTGTGGTAACAAGCCAAGTCTTGAGAACTGCTCATGCAGCAGCTGATGTTCTTATTGGAAAAGAGAGTTTCAAGGCACTTTCGAAATACCTATTTGATATTGAGCCAGTTCTAAAGGAATTACAGCTTCAAGAATTGAATGATTCTCAACCTGCTAGAGTTGCTCTAGAGTCTCTTGAAGCAGATGTTAAAAGGGCGAATAATATGGTTGAGAAGTACAAGAACCGTGGCCGTTTCTACTTGCTAGTTAAATGCCGGTCCATTGTCGAGGAAGTTGAGCAAGTTACAAGGGATATCGGAAGGTCTCTGGCTGCACTGTCTATTGCAAATACTGAAGTGCTATCGAGAATTTCTGATCAGGTTGATAGACTACAAGGTGAGATGCAAAGGGTTGAGTTCGAGGCTTCACAGTCTCAGCTTGAAATTGTTGACAAGTTGAACCAAGGACTAAGAGATCAGAAACAGGACCAGGCTTTCGCGAATGACATACTTGAGGAGATTGCAAGGGCAGTTGGCGTGCCGGTGGAACCATCCGAGATAGGAAAAGAGTTGGCCAGCATTAGGAAGGAAAAAGAAGAAGCTGCGAATAGGAAAGAAAAAGCCGAATTTGTTTTCTTGGAGCAGATCATTAAGTTACTCTCTAGAGCTGATGCAGCAAGGGATTATGAAGAAGTTAAGAATCAATACTTTGAAAGGGTTCAGGTGATAGAGAGATACGATTCAAAGGAAAAATATATCCAACCTCTTAATTCTTTCCTTTGCCGCATAAACGGAGCTGTTATGGTTGATCCTGTTAGCCTTTCCACAGGAACTACATGTGAGAGATCAGCTATTGAAGGTTGGTTTTATGATGGAAACAGAACTGATCCAGAAACACAAGAGGTTCTTGAAGATACTAGCTTGAGGTCAAACATTCCACTAAGACAATCGATCGAAGAGTGGAGAGAACTCAATTATTGTCTTTTGATAAGGTCTATCCGGGAAAATTTGTCGTTAAATTCTGATCTGAAAGAATCCCTGAGCCAAATGCAGGCTCTAATAGCTGAAAATTCTATTAACAAGGATTGGATCTCTATTGGGGAGGTTACTGATACCGTTATCTCGATCCTTGGGAAGTCCAATGACAGAGAAGTGAAGATGAAGATTTTGATCACTTTGAAAGATGTTGTAGAGGGGCATGCAAGAAACAAGGAGAAATTGGCTGAATCACAAGGATGGGATCATATTATTTCGTGCTTGGAAAGCAACTCTAACATTTCCAAGGCAGCAATTGATTTGTTATATGAGTTGCTTCAAGAAAGATCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGAGAACGACACTGCAGTTCTTAACCTTGTAACCCTTGTGAAGGACCCTGGAAACGATTCAGCAGAGGTGGCGAAGAAAATTTTGATGGAGCTTTTTGAAATAAATGAAAGCAGCATTGTCACTGCTGCTAATTGTGGCTGGTATAAGCCACTAGCTGATCGCATGATTCGAGGAGTTATAACTCCTTTGATAGAAATGATGTCTGGCAGTATCGAGTCGAAAGACCTTTCTTTATCAGCCTTGGGTAAACTAGCTGGATCTCATGCTAACAAGGGAATTATTGCTTCCTCCGGAGGTGTTCCTCTTATTCTAGATTTGATGTTCTCTCCTCGGACAAGGTCATTCATTACAATTAAATGCTCCGAAATCCTCGAGAAACTTTCTTCTTCTGACGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAACTTGAGTTAGATTCCATCATCACCAAATTGCTAGTTTTGCAACAGAATTCCAACTCAGGTCACAACCTTCGTAAGCCAACGCTACGTGCTCTTCTTGGCATTTGCAAGTTCGAGACTGGTTTGGTGAAGAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTTGATGATTCTGACTCAGAAGTCCGAGAGACTGCTATAAACCTGCTCTTTCTTTTCTCTCAGCATGAACCAGAAGGAGTAGTTGAATACCTTTTCAAGCCTAGAAGGCTAGAAGCTTTGATTGGATTCCTCGAGAACGACGACAATGATAATGTACAAATGGCTGCAGCTGGCTTACTAGCTAACCTACCAAAATCCGAACGAGAACTAACTACAAAGTTGATTGAAATGGGAGGACTTGATGCAATCATAAGCATTTTAAAAACAGGCAAAATGGAAGCAAAAGAAAACGCTCTCAGTGCACTCTTCAGGTTCACAGATCCTACAAATATCGAGTCACAGCGCGATTTGGTTAAACGCGGAATATATCCTTTACTTGTTGATTTTCTCAATACAGGTTCAATCACTGCAAAGGCAATTGCAGCAGCTTTCATCGGCGATCTTTCTATGAGCACACCAAAGCTCACAGTTATTTCCAAACCAAGCGGTTGCTGGTTTTTCAAATCATCGCGCGTTCCTTTATGTGCAGCTCATGATAGCGTATGCAGTGTGACCACAACATTTTGTCTATTGGAAGCAAATGCTTTACCTGGTTTGATAAAGCTGTTACATGGTGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCTACATTGGTATTGGAAGAGCATCCGCAGAGGGGTGCTCGTTTGTTGCATGAGAAAAATGCAATGAGACCTTTATTGGAGATTTTGACTTGGGGTAGTGAGTCACTTAAGGCAGAAGCTTTAGGACTTTTGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTATGGAACGACGGCTAGATCGCGTTTGATTTGTTTGACCGGCAGTAATATTTATGGAGACGGACACCTTAGAAGGAAAGCTGCTAAGGTATTGTCATTGCTTGAACGTTATTCTAGGTCTTCATCATCTGCAATCTCTGGAGTTTTGGAGTGA
Protein sequence

>Msa0077930

MVGLELIPIGTILTVVTSQVLRTAHAAADVLIGKESFKALSKYLFDIEPVLKELQLQELNDSQPARVALESLEADVKRANNMVEKYKNRGRFYLLVKCRSIVEEVEQVTRDIGRSLAALSIANTEVLSRISDQVDRLQGEMQRVEFEASQSQLEIVDKLNQGLRDQKQDQAFANDILEEIARAVGVPVEPSEIGKELASIRKEKEEAANRKEKAEFVFLEQIIKLLSRADAARDYEEVKNQYFERVQVIERYDSKEKYIQPLNSFLCRINGAVMVDPVSLSTGTTCERSAIEGWFYDGNRTDPETQEVLEDTSLRSNIPLRQSIEEWRELNYCLLIRSIRENLSLNSDLKESLSQMQALIAENSINKDWISIGEVTDTVISILGKSNDREVKMKILITLKDVVEGHARNKEKLAESQGWDHIISCLESNSNISKAAIDLLYELLQERSGWNQCFCKKLSENDTAVLNLVTLVKDPGNDSAEVAKKILMELFEINESSIVTAANCGWYKPLADRMIRGVITPLIEMMSGSIESKDLSLSALGKLAGSHANKGIIASSGGVPLILDLMFSPRTRSFITIKCSEILEKLSSSDDGIDFFVDGEGKQLELDSIITKLLVLQQNSNSGHNLRKPTLRALLGICKFETGLVKKAILAANGVSLILPLLDDSDSEVRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTTKLIEMGGLDAIISILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSITAKAIAAAFIGDLSMSTPKLTVISKPSGCWFFKSSRVPLCAAHDSVCSVTTTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTLVLEEHPQRGARLLHEKNAMRPLLEILTWGSESLKAEALGLLEKVFVSKEMVEYYGTTARSRLICLTGSNIYGDGHLRRKAAKVLSLLERYSRSSSSAISGVLE*