AlfalfaGEDB | Msa1451490

M. sativa cultivar zhongmu-4 / Msa1451490

KEGG: K11000
GO: GO:0000003 GO:0005575 GO:0005623 GO:0005886 GO:0007275 GO:0007623 GO:0008150 GO:0009555 GO:0016020 GO:0032501 GO:0032502 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0071944
PFAM: PF14288.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1451490	sp\|Q9S9U0\|CALSB_ARATH	69.865	1782	512	9	4	1776	3	1768	0.0	2549

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1451490	A0A072V5B8	98.480	1776	26	1	1	1776	1	1775	0.0	3618

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0090400	Msa1451490	0.812230	4.706692e-51	-8.615850e-47
Msa0094130	Msa1451490	0.806421	8.292127e-50	-8.615850e-47
Msa0137880	Msa1451490	0.805260	1.454416e-49	-8.615850e-47
Msa0192010	Msa1451490	0.964415	2.679390e-123	-8.615850e-47
Msa0192700	Msa1451490	0.842540	2.429386e-58	-8.615850e-47
Msa0251270	Msa1451490	0.820611	6.261275e-53	-8.615850e-47
Msa0267110	Msa1451490	0.827791	1.287316e-54	-8.615850e-47
Msa0272580	Msa1451490	0.991376	2.523058e-187	-8.615850e-47
Msa0321920	Msa1451490	0.803847	2.867051e-49	-8.615850e-47
Msa0397150	Msa1451490	0.807732	4.378084e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1451490	MtrunA17_Chr2g0282191	98.480	1776	26	1	1	1776	1	1775	3618
Msa1451490	MtrunA17_Chr4g0040111	70.528	1761	511	3	17	1775	7	1761	2610
Msa1451490	MtrunA17_Chr2g0324411	67.521	1755	546	12	29	1775	14	1752	2469
Msa1451490	MtrunA17_Chr3g0130141	47.160	1796	833	28	29	1774	187	1916	1604
Msa1451490	MtrunA17_Chr7g0214481	46.009	1804	872	27	29	1774	190	1949	1553
Msa1451490	MtrunA17_Chr1g0213421	46.213	1809	859	29	29	1776	193	1948	1527
Msa1451490	MtrunA17_Chr2g0308711	44.506	1802	904	27	25	1774	181	1938	1507
Msa1451490	MtrunA17_Chr3g0116421	44.960	1766	876	28	29	1775	218	1906	1474
Msa1451490	MtrunA17_Chr3g0096261	43.563	1802	877	31	29	1776	189	1904	1430
Msa1451490	MtrunA17_Chr1g0213461	44.432	1778	862	29	29	1772	205	1890	1417

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa1451490	AT4G04970.1	69.865	1782	512	9	4	1776	3	1768	2549
Msa1451490	AT4G03550.1	67.065	1758	559	10	29	1775	28	1776	2456
Msa1451490	AT5G13000.1	46.269	1809	857	30	29	1774	190	1946	1560
Msa1451490	AT2G13680.1	46.532	1788	858	27	29	1774	189	1920	1545
Msa1451490	AT1G05570.4	45.877	1807	866	29	29	1774	186	1941	1535
Msa1451490	AT1G05570.1	45.877	1807	866	29	29	1774	186	1941	1535
Msa1451490	AT1G05570.3	45.877	1807	866	29	29	1774	186	1941	1535
Msa1451490	AT2G31960.1	45.620	1815	859	28	29	1774	186	1941	1526
Msa1451490	AT2G31960.5	45.620	1815	859	28	29	1774	186	1941	1526
Msa1451490	AT2G31960.3	45.620	1815	859	28	29	1774	186	1941	1526

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Find 428 sgRNAs with CRISPR-Local

Find 520 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTCCTCATCATAATA+TGG	0.217240	tig0033439:-11511	None:intergenic
AAAATCATTCCCCATCCTGT+GGG	0.608068	tig0033439:-13845	None:intergenic
AAACTGGCTATGTTGAACAA+AGG	0.659814	tig0033439:+9643	Msa1451490:CDS
AAACTTCCTCATCATAATAT+GGG	0.404547	tig0033439:-11510	None:intergenic
AAAGAGAATCCTAGTTTGCA+TGG	0.512137	tig0033439:-14011	None:intergenic
AACATCGGCGTCAAGCGCGT+CGG	0.553870	tig0033439:-9112	None:intergenic
AACCATGAGAAAACTGCCAT+GGG	0.553485	tig0033439:-13974	None:intergenic
AACTATAGTGTGGGATACTG+TGG	0.574900	tig0033439:+13901	Msa1451490:CDS
AACTCGCGACGAAGATCGGT+TGG	0.568096	tig0033439:-9231	None:intergenic
AACTTCCTCATCATAATATG+GGG	0.646304	tig0033439:-11509	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCGCTTTATCTTCTAATTTG+GGG	+	tig0033439:9264-9283	Msa1451490:CDS	30.0%
TAAATATAACAGAGACACTC+CGG	-	tig0033439:9315-9334	None:intergenic	30.0%
TATGGCAAAAGAGCTTAATA+TGG	+	tig0033439:9341-9360	Msa1451490:CDS	30.0%
AGCTTAATATGGTTCTTGAT+GGG	+	tig0033439:9352-9371	Msa1451490:CDS	30.0%
AAGCTAGACTCAAAATTCAA+AGG	-	tig0033439:9588-9607	None:intergenic	30.0%
ACTTCATGGATTTGCAAATA+TGG	+	tig0033439:10417-10436	Msa1451490:CDS	30.0%
AAAAATTGAATCAAGCCAAG+TGG	+	tig0033439:10670-10689	Msa1451490:CDS	30.0%
CCTGAATATATTAGTCACAA+TGG	-	tig0033439:11017-11036	None:intergenic	30.0%
CCATTGTGACTAATATATTC+AGG	+	tig0033439:11014-11033	Msa1451490:CDS	30.0%
GCCAAACAAAGATTTGAATA+AGG	+	tig0033439:11144-11163	Msa1451490:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0033439	gene	8766	14096	8766	ID=Msa1451490;Name=Msa1451490
tig0033439	mRNA	8766	14096	8766	ID=Msa1451490-mRNA-1;Parent=Msa1451490;Name=Msa1451490-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|1776
tig0033439	exon	8766	14096	8766	ID=Msa1451490-mRNA-1:exon:18067;Parent=Msa1451490-mRNA-1
tig0033439	CDS	8766	14096	8766	ID=Msa1451490-mRNA-1:cds;Parent=Msa1451490-mRNA-1

Gene Sequence

>Msa1451490

ATGCAAATGAGACAACGTCCCTCCGCCATGCGCGGTGGTCCGGTGAACCAGCAACGACCACCGCCACCTCCGTTAAACTCCGTCTTCAACATTATCCCAGTCCACGACCTCCTCATAGACCATCCATCACTCCGTTATCCAGAAGTCCGAGCCGCCGCCGCCGCACTCCGCACCGTCGGCGACCTCCCAAAGCACCGTTTCATGGCCTGGCAACCAGACATGGATCTTCTCGACTGGCTCCGGTTACTCTTCGGATTCCAAATCGACAACGCAAGAAACCAAAGAGAGCATTTAGTTCTTCATCTCTCAAATGCACAGATGCGTCTTGAACCTCCTCCGGCTATCCCCGACGCGCTTGACGCCGATGTTCTACAACGTTTCCGACGAAAGCTTCTTCATAACTACACTTCCTGGTGCTCTTATCTTGGTCTTAAGTCAAGCGTGTTGAACACGCGCCGCCGTGATCCAACCGATCTTCGTCGCGAGTTGCTTTACGTTTCGCTTTATCTTCTAATTTGGGGTGAAGCTGGTAACCTTCGTTTTGTTCCGGAGTGTCTCTGTTATATTTATCATTTTATGGCAAAAGAGCTTAATATGGTTCTTGATGGGTTTATTGATCCTGATACTGGTAGTCCATTTTTGCCAACAGTTTCTGGTGAATATGGATTTTTGAAATCTGTTGTTATGCCAATTTATAATACTATTAAGATTGAAGTTGATAGTAGTAGAAATGGTAAAGCACCACATTCTGCATGGAGGAATTATGATGATATAAATGAGTATTTTTGGAGTAGGAGGTGTTTGAAGAAACTTAGATGGCCTTTGAATTTTGAGTCTAGCTTTTTTGGGACTACACCTAAGGATAATAGGGTTGGGAAAACTGGCTATGTTGAACAAAGGTCATTTTGGAATATTTATAAGAGTTTTGATAGGTTATGGGTTATGTTGATTTTGTTCATGCAAGGTGCTATTATTGTTGCTTGGGAGGGTACTCAGTATCCTTGGCAAGCATTGGAGAGAAAGGATGTTCAAGTCAAAATGTTGACTTTGTTTATCACTTGGGGTGGTCTTAGGGTACTTCAATCTGTGCTTGATGCTGGAACTCAATATAGTTTGGTTACTAGAGAGACGGCTTGGCGTGGAGTAAGGATGGTGGCCAAGGGTTTGGCTGCTATAACGTGGACTGTTTTGTTTGGGGTGTTTTATGGATTGATTTGGATTGAGAAGGGTTCTAAACGAAATTGGTCTGATGCGGCAAATGAAAGGATTTATACATTTCTTAAGATTGTCTTCTGCTTTCTATTACCAGAGATGTTGGCATGTGTACTGTTCATATTGCCGTGTATACGGAACTTCATTGAGGAATCAGACTGGAGAATAGTATACTGGTTGACATGGTGGTTTCATACCCGGATTTTTGTGGGTCGGGGTGTGAGACAAGGGCTTATGGATAATGTGAAGTATAGTCTTTTCTGGATTGGAGTATTGGCTGCAAAATTTTCATTCAGTTACTTTCTTCAATTCAAACCTCTTGTTGCTCCCACTAAGGCTCTGTTGAAACTTAGGGGCATCAATTATAGATGGCATGAGTTTTTCAATAACACCAACAGAGTGGCAGTTGTTTTGCTATGGTTACCTGTTGTGTTGGTATACTTCATGGATTTGCAAATATGGTATTCGATTTTCTCTTCTTTTATTGGTGGCACGATTGGTCTGTTCTCACATTTGGGTGAAATCCGGAATATCTCACAACTCAGGCTCCGATTCCAGTTCTTTGCCAGTGCAATGCAGTTCAATCTGATGCCAGAGGAGAAGCTTCTAAGCCAGCAAGCAACGATGCTGAGGAAGGTTCGTGATGCTATCCATCGGTTGAAATTACGATACGGACTTGGTCAACCCTTCACAAAAATTGAATCAAGCCAAGTGGATGCTACCAGGTTTGCCTTAATATGGAATGAGATAATCATTACTTTCAGGGAGGAAGATATAATCAGTGATCGAGAACTTGAGCTCCTGGAACTGCCACCAAATTGCTGGGACATTAGGGTAATTCGATGGCCGTGTTTCCTTCTCAGCAACGAGGTACTACGTGCTCTCAGTCAGGCAAAAGAGCTGGAAAATGAGTCTGACAGGTCACTATGGTTGAAGATGTGCAAGAATGAGTATCGCCGGTGTGCTGTCATTGAAGCTTATGATAGCATTAAGTACTTATTTCGTATGATTCTCAAAGTTGATAAGGTAGAGTTCTCCATTGTGACTAATATATTCAGGGACATAGACTACTGCATTCAGGCGGGGAAGTTAACAGAAGCGTACAAGATGTCTCTGCTACCAGAGCTACATGCTAAGGTGACTGAACTGGTTAAAATTTCGATACAGCCAAACAAAGATTTGAATAAGGCTGTAAATTTGTTGCAAGCCTTGTATGAATTGTGTATTCGAAGATTTTCAAAGGTGAAGAAGACCGCCGCCCAGCTAGTTGAGGAAGGCCTGGCGCTACAAGGTCCAACAACAGAAGGGGGACTGCTCTTTGAGAATGCTATTGAGTTTCCTGATGCCGGAGATGAAGCCTTTACCAGGCAGCTCAGAAGGTTGTCTACAATTCTCACTTCAAGAGACGCAATGCACAATGTTCCGTTGAATCTTGAGGCTCGACGGCGGATTGCTTTCTTTAGCAATTCTTTGTTTATGAACATTCCCCGTGCTCCCTATGTTGAAAAAATGATGGCTTTCAGTGTTTTGACCCCATATTATGATGAGGAAGTTTTGTATAGCAAAGAGTCTCTTCGAAAAGAGAATGAGGATGGCATTACTACTCTGTTTTATTTGCAGAAGATTTATGACGATGAATGGAACAATTTTATGGAAAGAATGCGTAGAGAGGGCTTGAAAGATGAGGATGATATCTGGACAACAAAATCCTTGGACCTTCGCCTTTGGGTATCTTATAGAGGTCAAACATTGTCTCGCACAGTCAGAGGGATGATGTACTATTATAGCGCCCTTAAGATGCTCGCTTTTCTTGATTCAGCATCTGAGATGGATGTAAGACAGGGATCCGAGCATATTACTTCATATGGTTCAACAAACGCAAACAACCGTCTGAATACTCTACGCTCAGATGTGCATCCATCTCTACGGAGATTGCGAAGGGCAGATAGCAGTGTGACGCTGTTATTCAAGGGAGATGAATATGGGAGTGCGATGATGAAGTTCTCATATGTTGTGGCATGCCAGATGTATGGACGCCACAAGGCAGAGAAGAATCCCCGAGCTGATGATATACTGTATCTGATGAAAAACAACGAGGCCCTTCGAGTAGCATATGTTGATGAGATTTCTTTGGGGAGGGAAGAGACTGAATATTACTCTGTTCTTGTGAAGTTTGATCAGCAATTGCAGAGTGAGGTTGAGATCTTTCGGGTCAGATTGCCTGGTCCTTTAAAACTTGGAGAAGGGAAACCAGAAAATCAGAATCATGCAATGATCTTTACGCGGGGTGATGCAATTCAGACCATAGATATGAATCAAGACAATTATTTTGAGGAAGCTCTCAAAATGCGGAATCTGTTGGAGGAGTTCAATGTCTACCATGGTATCAAGAAGCCAACCATTTTGGGGGTTCGAGAGAATATATTCACAGGCTCTGTTTCGTCGCTTGCTTGGTTCATGTCATCCCAAGAGACAAGTTTTGTGACACTGGGCCAGCGATTTCTGGCAAACCCTTTGAAAGTACGGATGCACTACGGTCATCCGGATGTGTTTGACAGATTCTGGTTCTTGTGTAGGGGTGGAGTCAGCAAGGCATCTAGAGTGATCAATATTAGTGAAGATATTTTTGCTGGTTTCAATTGTACATTGCGAGGTGGCAATGTGACACATCATGAATATATACAGGTAGGTAAAGGAAGAGATGTTGGCTTGAATCAGATATCCATGTTTGAGGCCAAGGTCGCAAGTGGCAATGGCGAGCAGGTGCTGAGCAGAGATGTCTACCGGCTAGGACATAGATTAGACTTCTTCCGCATGCTTTCAGTGTTCTACACAACTATAGGATTTTACTTTAACTCCATGGTAGTTGTAATGACAGTCTATGCCTTTCTTTGGGGCCGACTTTATATGGCCCTCAGCGGCATTGAAAAGGAAGCCCAAAACAATGCTAGCAACAATAAAGCCCTTGGTGCAATAGTAAATCAGCAGTTTATAATCCAGCTTGGTATTTTCACTGCACTCCCAATGGTTGTTGAAAATACTCTTGAGCACGGGTTCCTTCCTGCAGTATGGGACTTCTTGACAATGCAGTTGCAGCTTGGATCACTATTTTTTACATTCTCTTTGGGAACTCGCACCCATTTCTTTGGTCGGACTATACTTCATGGTGGTGCTAAGTACCGAGCCACAGGTCGCGGTTTTGTGGTGGAGCACAAGAGTTTTGCTGAGAACTATCGGCTATATGCTAGAAGCCATTTTGTCAAGGCCATTGAACTTGGAATTATTTTAATTGTGTATGCTTCTCATAGTCCCTTGCCTAAGGCTACTTTTGTGTACATAGCTATGACACTCTCAAATTGGTTTCTTGTAGTTTCATGGATAATGTCTCCTTTTGTCTTCAATCCCTCCGGATTTGATTGGCTGAAAACTGTATATGACTTTGAAGACTTTGTGAATTGGATTTGGTATCCGGGTGGGCCGTTCAAAAAGGCAGAATACAGCTGGGAAACATGGTGGTATGAGGAGCAAGATCATCTAAAAACAACCGGTATATGGGGAAAGCTGTTAGAAATCATTTTAGACCTTCGATTTTTCTTCTTTCAGTATGGCATTGTTTACCAGCTCGGCATTGCAAATCATAATACTAGTATAGCTGTTTACTTGCTGTCATGGATATTCATGGTTGCTGTTGTTGCGATTTATATCAGCATAGCATATGCACGGGATAAATATGGTACAAATGAGCACATATATTATCGTCTAGTGCAGCTTCTTGTGATTATGGTCACAGTTCTAGTAATTGTCCTCTTACTGGAGTTCACCCGCTTCAGTTTTGTTGATCTTCTAACAAGCTCGTTGGCATTCATTCCCACAGGATGGGGAATGATTTTAATAGCCCAGGTGCTTAGGCCTTTTTTGCAGTCAACTATAGTGTGGGATACTGTGGTTTCCTTGGCACGACTCTATGATTTACTGTTTGGGATTATTGTTATGGCCCCCATGGCAGTTTTCTCATGGTTACCTGGATTTCAATCCATGCAAACTAGGATTCTCTTTAATGAAGCTTTCAGCAGGGGTCTCCAGATATCTCGAATAGTTAGTGGCAAGAAATCTGCTTGA

Protein sequence

>Msa1451490

MQMRQRPSAMRGGPVNQQRPPPPPLNSVFNIIPVHDLLIDHPSLRYPEVRAAAAALRTVGDLPKHRFMAWQPDMDLLDWLRLLFGFQIDNARNQREHLVLHLSNAQMRLEPPPAIPDALDADVLQRFRRKLLHNYTSWCSYLGLKSSVLNTRRRDPTDLRRELLYVSLYLLIWGEAGNLRFVPECLCYIYHFMAKELNMVLDGFIDPDTGSPFLPTVSGEYGFLKSVVMPIYNTIKIEVDSSRNGKAPHSAWRNYDDINEYFWSRRCLKKLRWPLNFESSFFGTTPKDNRVGKTGYVEQRSFWNIYKSFDRLWVMLILFMQGAIIVAWEGTQYPWQALERKDVQVKMLTLFITWGGLRVLQSVLDAGTQYSLVTRETAWRGVRMVAKGLAAITWTVLFGVFYGLIWIEKGSKRNWSDAANERIYTFLKIVFCFLLPEMLACVLFILPCIRNFIEESDWRIVYWLTWWFHTRIFVGRGVRQGLMDNVKYSLFWIGVLAAKFSFSYFLQFKPLVAPTKALLKLRGINYRWHEFFNNTNRVAVVLLWLPVVLVYFMDLQIWYSIFSSFIGGTIGLFSHLGEIRNISQLRLRFQFFASAMQFNLMPEEKLLSQQATMLRKVRDAIHRLKLRYGLGQPFTKIESSQVDATRFALIWNEIIITFREEDIISDRELELLELPPNCWDIRVIRWPCFLLSNEVLRALSQAKELENESDRSLWLKMCKNEYRRCAVIEAYDSIKYLFRMILKVDKVEFSIVTNIFRDIDYCIQAGKLTEAYKMSLLPELHAKVTELVKISIQPNKDLNKAVNLLQALYELCIRRFSKVKKTAAQLVEEGLALQGPTTEGGLLFENAIEFPDAGDEAFTRQLRRLSTILTSRDAMHNVPLNLEARRRIAFFSNSLFMNIPRAPYVEKMMAFSVLTPYYDEEVLYSKESLRKENEDGITTLFYLQKIYDDEWNNFMERMRREGLKDEDDIWTTKSLDLRLWVSYRGQTLSRTVRGMMYYYSALKMLAFLDSASEMDVRQGSEHITSYGSTNANNRLNTLRSDVHPSLRRLRRADSSVTLLFKGDEYGSAMMKFSYVVACQMYGRHKAEKNPRADDILYLMKNNEALRVAYVDEISLGREETEYYSVLVKFDQQLQSEVEIFRVRLPGPLKLGEGKPENQNHAMIFTRGDAIQTIDMNQDNYFEEALKMRNLLEEFNVYHGIKKPTILGVRENIFTGSVSSLAWFMSSQETSFVTLGQRFLANPLKVRMHYGHPDVFDRFWFLCRGGVSKASRVINISEDIFAGFNCTLRGGNVTHHEYIQVGKGRDVGLNQISMFEAKVASGNGEQVLSRDVYRLGHRLDFFRMLSVFYTTIGFYFNSMVVVMTVYAFLWGRLYMALSGIEKEAQNNASNNKALGAIVNQQFIIQLGIFTALPMVVENTLEHGFLPAVWDFLTMQLQLGSLFFTFSLGTRTHFFGRTILHGGAKYRATGRGFVVEHKSFAENYRLYARSHFVKAIELGIILIVYASHSPLPKATFVYIAMTLSNWFLVVSWIMSPFVFNPSGFDWLKTVYDFEDFVNWIWYPGGPFKKAEYSWETWWYEEQDHLKTTGIWGKLLEIILDLRFFFFQYGIVYQLGIANHNTSIAVYLLSWIFMVAVVAIYISIAYARDKYGTNEHIYYRLVQLLVIMVTVLVIVLLLEFTRFSFVDLLTSSLAFIPTGWGMILIAQVLRPFLQSTIVWDTVVSLARLYDLLFGIIVMAPMAVFSWLPGFQSMQTRILFNEAFSRGLQISRIVSGKKSA*