AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0094130

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094130 MtrunA17_Chr2g0332111 99.001 901 9 0 1 901 1 901 0.0 1854
Msa0094130 MtrunA17_Chr4g0004191 81.687 901 163 1 1 901 1 899 0.0 1468
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0094130 AT1G80410.1 75.694 901 213 4 1 901 1 895 0.0 1366
Msa0094130 AT1G80410.2 75.778 900 212 4 1 900 1 894 0.0 1363

Find 221 sgRNAs with CRISPR-Local

Find 846 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGCAGGTTATATCAAATTT+TGG 0.103943 1_2:+77244108 Msa0094130:three_prime_UTR
ATTTAATTATGTGAAAATTT+TGG 0.170095 1_2:+77244415 Msa0094130:three_prime_UTR
CCATGAATCCAGACAATTAT+AGG 0.203088 1_2:+77235597 Msa0094130:CDS
CATTCATGGATCCCACTTTA+TGG 0.203341 1_2:-77242206 None:intergenic
ATTGCAGTTCATAAACTTCT+TGG 0.221702 1_2:+77243384 Msa0094130:CDS
GAATTGAATTTGAGAGATTA+TGG 0.234678 1_2:-77231649 None:intergenic
CCTATAATTGTCTGGATTCA+TGG 0.238309 1_2:-77235597 None:intergenic
CCTTATTGTCCAGGTGGTTT+TGG 0.254259 1_2:+77239200 Msa0094130:intron
TTTGTATTGTTTGGTTTCAT+AGG 0.271126 1_2:-77232757 None:intergenic
TGAAACCAAACAATACAAAA+AGG 0.271737 1_2:+77232761 Msa0094130:CDS
CAAAACTCGGTGACCCTTGC+TGG 0.285725 1_2:-77244085 None:intergenic
ATATGCAAGACCACCGTAAA+TGG 0.288770 1_2:+77243953 Msa0094130:CDS
CAGCAAGGGTCACCGAGTTT+TGG 0.298041 1_2:+77244086 Msa0094130:three_prime_UTR
TTTGTGGACTTTGTTCTTGT+TGG 0.301744 1_2:+77237868 Msa0094130:CDS
CATGTTTGCTGGCATGTTTA+TGG 0.306259 1_2:+77233351 Msa0094130:CDS
TTGATGCATAGAGCTGCTTT+TGG 0.307269 1_2:+77242599 Msa0094130:CDS
TTGAAGAGATTGGCCTCTTT+AGG 0.308570 1_2:-77231806 None:intergenic
GCTCAAATGCGAGATTTATC+TGG 0.312933 1_2:+77234135 Msa0094130:CDS
TTTAAAGCAATTACTAAGAT+TGG 0.316884 1_2:+77241954 Msa0094130:CDS
GACAGCCTCAGCTCTTCTAT+TGG 0.317316 1_2:-77242645 None:intergenic
ACCAAACAACGATGAGAATC+AGG 0.328847 1_2:-77241988 None:intergenic
GTTGGGTTATATTCAGAAAA+TGG 0.332435 1_2:+77236029 Msa0094130:CDS
TGTTCAGGTCTCTTTGTTAG+AGG 0.332845 1_2:+77235331 Msa0094130:intron
TGGAATACAAATCAGTTTAG+AGG 0.333872 1_2:-77244170 None:intergenic
TTGAGTTAGAGAATTCTATT+AGG 0.334284 1_2:+77236862 Msa0094130:CDS
AACAATGAGTTTGAAGAGAT+TGG 0.335974 1_2:-77231816 None:intergenic
TGATTGCTTCCCTGTATTCT+CGG 0.336107 1_2:-77233392 None:intergenic
ACGTGATCTATCTCTCTTAC+AGG 0.341032 1_2:+77233464 Msa0094130:CDS
TACTTCCGCCAAGGGGATCT+TGG 0.344936 1_2:+77239415 Msa0094130:CDS
GAAGAATTCACCTGATTCAT+TGG 0.350252 1_2:+77241611 Msa0094130:CDS
ACAGCCTCAGCTCTTCTATT+GGG 0.350871 1_2:-77242644 None:intergenic
AAGCAGCTGCTGGAGCTATC+AGG 0.351044 1_2:+77239599 Msa0094130:CDS
CCCTGATTCTCATCGTTGTT+TGG 0.355385 1_2:+77241987 Msa0094130:CDS
AAGCAGCAGATAGTTATATT+AGG 0.355736 1_2:+77236536 Msa0094130:CDS
ACTGAAGCATGCTGGTGATT+TGG 0.360920 1_2:+77238977 Msa0094130:CDS
ACGCATGCTGCAGGCTGATC+AGG 0.362641 1_2:+77239076 Msa0094130:CDS
AAGCTGAGCGTCAAACTATA+AGG 0.364374 1_2:+77242271 Msa0094130:CDS
GTCAGTCACAGGAGCATTCA+TGG 0.366173 1_2:-77242220 None:intergenic
ACCTTAAGAGTCATGTTTGC+TGG 0.373822 1_2:+77233340 Msa0094130:CDS
GTTTGTAGATTCCTCTCCAT+TGG 0.375162 1_2:+77231546 Msa0094130:five_prime_UTR
CCCCGAGGATCTGGATCAAC+AGG 0.377169 1_2:-77240769 None:intergenic
TAGAAAGTGCGATTTCATAT+TGG 0.378054 1_2:-77238005 None:intergenic
TCCTCCTCAGCTGTTGACTT+TGG 0.383700 1_2:-77240518 None:intergenic
GATTTGTACATACCTTAGTT+AGG 0.386456 1_2:-77236564 None:intergenic
AGTCTTTAAGTGTCCATTCC+CGG 0.389184 1_2:-77243359 None:intergenic
GACTTTGTTCTTGTTGGCTC+AGG 0.397278 1_2:+77237874 Msa0094130:CDS
ATCGGTCCGACCGAGAATAC+AGG 0.398414 1_2:+77233382 Msa0094130:CDS
ATCGAAAGCTATTGAAATTC+TGG 0.398827 1_2:+77234891 Msa0094130:CDS
TTGAGAAAGAGTACTTAAGT+AGG 0.400500 1_2:+77231576 Msa0094130:five_prime_UTR
AAATTTCACCTATAATTGTC+TGG 0.400605 1_2:-77235605 None:intergenic
AGTCAAATCATCGCATGAAC+TGG 0.409600 1_2:+77234193 Msa0094130:CDS
ACCTGTTGATCCAGATCCTC+GGG 0.411505 1_2:+77240768 Msa0094130:CDS
TCTAAAAGCAATGGCGCGCT+TGG 0.412286 1_2:+77243330 Msa0094130:intron
ATGGCTAGAACTACCATTTA+CGG 0.413854 1_2:-77243966 None:intergenic
TAAGCGGTCATCTGCTGTTA+AGG 0.415951 1_2:+77236115 Msa0094130:CDS
ATGGCGCGCTTGGACCAATC+CGG 0.416357 1_2:+77243340 Msa0094130:CDS
TTTGTAGATTCCTCTCCATT+GGG 0.416913 1_2:+77231547 Msa0094130:five_prime_UTR
TCACCTTGAAGAAAATCTAA+TGG 0.423111 1_2:-77236502 None:intergenic
GCTAGTGGGATATCAAAGTC+TGG 0.423291 1_2:+77240730 Msa0094130:CDS
CTCGAGGGATATTGAAGAGC+AGG 0.423397 1_2:+77244253 Msa0094130:three_prime_UTR
CAACATGTTCTCATGTATAC+TGG 0.433077 1_2:-77244354 None:intergenic
AGTATGAATGAAAATCAAAT+TGG 0.433591 1_2:-77239495 None:intergenic
GATTAAATTCTTCCATAAAG+TGG 0.441252 1_2:+77242194 Msa0094130:intron
GATAGAAACTTTATCGATGA+AGG 0.441967 1_2:+77233160 Msa0094130:intron
CGGTGACCCTTGCTGGGAAG+TGG 0.442227 1_2:-77244078 None:intergenic
ACTTCCGCCAAGGGGATCTT+GGG 0.444899 1_2:+77239416 Msa0094130:CDS
AAGTGTGTCTCCAATGAATC+AGG 0.448584 1_2:-77241621 None:intergenic
TCTAATCGATCTATTTCATC+AGG 0.452007 1_2:-77236062 None:intergenic
AAATTATACACATTTGCAAA+TGG 0.454756 1_2:-77244190 None:intergenic
TAGATTCCTCTCCATTGGGT+TGG 0.455719 1_2:+77231551 Msa0094130:five_prime_UTR
TTAAGTGTCCATTCCCGGAT+TGG 0.455748 1_2:-77243354 None:intergenic
TCCTCAGCTGTTGACTTTGG+AGG 0.456717 1_2:-77240515 None:intergenic
CGTAAGATTTCAATATTGTC+AGG 0.457212 1_2:-77233444 None:intergenic
TAAATCTGAAGCATATGAAC+TGG 0.458052 1_2:+77233208 Msa0094130:CDS
CCCGTACTCCACATACTTTG+AGG 0.459572 1_2:+77243889 Msa0094130:CDS
ATGTTTATGGTCTTCTCTAT+CGG 0.460906 1_2:+77233364 Msa0094130:CDS
TGCTTCCCTGTATTCTCGGT+CGG 0.462655 1_2:-77233388 None:intergenic
CCGTACTCCACATACTTTGA+GGG 0.467306 1_2:+77243890 Msa0094130:CDS
AGTAGCTCTCCCTGCTACCT+AGG 0.469178 1_2:-77244298 None:intergenic
TGCAGATGAAGCTAGGTGTA+TGG 0.469186 1_2:+77239016 Msa0094130:CDS
GTAATTAAACTAACCTTCCC+AGG 0.469208 1_2:-77236706 None:intergenic
GCATCATCATCCTAGGTAGC+AGG 0.470478 1_2:+77244288 Msa0094130:three_prime_UTR
ACGATAAAGAAGCTAACAAA+TGG 0.472869 1_2:-77244384 None:intergenic
AAGGCCTTCAACGATGTGTT+GGG 0.474165 1_2:+77236012 Msa0094130:CDS
AAAAGCGTACCTCCATGATC+TGG 0.474294 1_2:-77232819 None:intergenic
GGCAACATACCTTCAATCCT+TGG 0.475403 1_2:-77233235 None:intergenic
GGGTTTGACATTAAATTGCA+TGG 0.476059 1_2:+77233181 Msa0094130:CDS
TAAATTTCTGGTCCTGCATA+CGG 0.476122 1_2:+77244328 Msa0094130:three_prime_UTR
TGAGAAAGAGTACTTAAGTA+GGG 0.479695 1_2:+77231577 Msa0094130:five_prime_UTR
AATCATCGCATGAACTGGAT+TGG 0.481801 1_2:+77234198 Msa0094130:CDS
CAACGTTATCACCCGGTGAA+TGG 0.484949 1_2:-77243985 None:intergenic
CTGTAAGCAGTCAGCTGCAC+GGG 0.486688 1_2:+77242429 Msa0094130:intron
GTGGAATCTGCCACATCAAA+CGG 0.487761 1_2:+77244007 Msa0094130:CDS
CCCTCAAAGTATGTGGAGTA+CGG 0.488830 1_2:-77243890 None:intergenic
AGAGAAACAGAGAAAGGGGT+TGG 0.489582 1_2:-77231720 None:intergenic
GATACGACGACGACGACAAT+GGG 0.490241 1_2:+77231770 Msa0094130:exon
TCGTCGTATCGGAGTGAGTT+GGG 0.491680 1_2:-77231757 None:intergenic
CGCTTGGACCAATCCGGGAA+TGG 0.493217 1_2:+77243346 Msa0094130:CDS
GCCAGCAAACATGACTCTTA+AGG 0.493533 1_2:-77233341 None:intergenic
CTGCATTTGCAGATGAAGCT+AGG 0.497985 1_2:+77239009 Msa0094130:CDS
AATGACATTGCGTACATATG+TGG 0.500998 1_2:+77239528 Msa0094130:CDS
GAAATTCTGGAAGCATATGA+AGG 0.501912 1_2:+77234904 Msa0094130:CDS
AACCTGTTGATCCAGATCCT+CGG 0.503841 1_2:+77240767 Msa0094130:CDS
GAAGGCCTTCAACGATGTGT+TGG 0.504909 1_2:+77236011 Msa0094130:CDS
TATTAGGCCTCTCCTAACTA+AGG 0.506385 1_2:+77236552 Msa0094130:CDS
GAGGCTGTCAAGTTGATTGA+AGG 0.508013 1_2:+77242659 Msa0094130:CDS
ATATTGAAGAGCAGGGTCAA+TGG 0.508826 1_2:+77244261 Msa0094130:three_prime_UTR
CTGTGTGAAACGCATGCTGC+AGG 0.509300 1_2:+77239067 Msa0094130:CDS
ATAACCCAACACATCGTTGA+AGG 0.509961 1_2:-77236016 None:intergenic
TGGATTTGCATCATCATCCT+AGG 0.511928 1_2:+77244281 Msa0094130:three_prime_UTR
TTTCTGAGCAGGAGGCAACT+TGG 0.512661 1_2:-77240552 None:intergenic
ATTAAATTCTTCCATAAAGT+GGG 0.514002 1_2:+77242195 Msa0094130:CDS
GAGAATTCTATTAGGACGAC+CGG 0.515037 1_2:+77236870 Msa0094130:CDS
TATTGGTGCAGCATTATGAC+AGG 0.515257 1_2:+77237977 Msa0094130:intron
TGGCGCGCTTGGACCAATCC+GGG 0.515296 1_2:+77243341 Msa0094130:CDS
TCTTGAGGAGTTGCAGAAGA+AGG 0.518804 1_2:+77235376 Msa0094130:CDS
TAGCGAGAGAAACAGAGAAA+GGG 0.520546 1_2:-77231725 None:intergenic
AAAACTCGGTGACCCTTGCT+GGG 0.521266 1_2:-77244084 None:intergenic
ACTGGTTCGCCAAGGATTGA+AGG 0.521602 1_2:+77233226 Msa0094130:CDS
TTGTGTATATCTTACCTCCC+AGG 0.522407 1_2:-77236900 None:intergenic
GCCGTGCTATTCACAAAAGA+CGG 0.528019 1_2:+77239234 Msa0094130:CDS
CATTGTCGTCGTCGTCGTAT+CGG 0.531371 1_2:-77231768 None:intergenic
GTATACTGGCCGCCGTATGC+AGG 0.532076 1_2:-77244340 None:intergenic
AGAGTTCAAATGATGTGAAA+CGG 0.533746 1_2:-77234226 None:intergenic
CTGACAGTGAGAAACTCGTT+TGG 0.534164 1_2:+77242238 Msa0094130:CDS
CCGTGCTATTCACAAAAGAC+GGG 0.534821 1_2:+77239235 Msa0094130:CDS
GGAATACAAATCAGTTTAGA+GGG 0.538331 1_2:-77244169 None:intergenic
TGCTTCTCTTCCTCCTAAAG+AGG 0.539080 1_2:+77231793 Msa0094130:CDS
GAGAAACAGAGAAAGGGGTT+GGG 0.539928 1_2:-77231719 None:intergenic
GAAAGATCTGAGAATAGAGA+TGG 0.540795 1_2:-77236667 None:intergenic
TGGTAGTTCTAGCCATTCAC+CGG 0.540956 1_2:+77243973 Msa0094130:CDS
ATGCAGCATCTTGATCATCA+AGG 0.544689 1_2:-77243413 None:intergenic
CCTCAAAGTATGTGGAGTAC+GGG 0.547267 1_2:-77243889 None:intergenic
GTCGTCGTATCGGAGTGAGT+TGG 0.547549 1_2:-77231758 None:intergenic
AGGACGACCGGTCAATACCC+TGG 0.549573 1_2:+77236882 Msa0094130:CDS
TCCAAAGTCAACAGCTGAGG+AGG 0.549595 1_2:+77240517 Msa0094130:CDS
AAGCTTGGTCGCTTAGAAGA+AGG 0.551258 1_2:+77235548 Msa0094130:CDS
ATAGAAACTTTATCGATGAA+GGG 0.552129 1_2:+77233161 Msa0094130:intron
GATACCCTGTACAAAACACT+TGG 0.553474 1_2:+77236083 Msa0094130:CDS
ATAGGTTGAAGATCCATTGT+TGG 0.554394 1_2:+77241560 Msa0094130:intron
CTTCTTTATACAATCACCCT+GGG 0.554688 1_2:+77236689 Msa0094130:CDS
GTCTCTTTGTTAGAGGAATG+TGG 0.555782 1_2:+77235338 Msa0094130:CDS
ATAGCGAGAGAAACAGAGAA+AGG 0.556172 1_2:-77231726 None:intergenic
TGTGTATATCTTACCTCCCA+GGG 0.556962 1_2:-77236899 None:intergenic
TTTATACAATCACCCTGGGA+AGG 0.557847 1_2:+77236693 Msa0094130:CDS
CCGTTGGTTGAGTTCTAGCA+TGG 0.558277 1_2:+77244468 Msa0094130:three_prime_UTR
AATGAAGAATCAAGTGCTAG+TGG 0.558556 1_2:+77240715 Msa0094130:CDS
TCGGTCCGACCGAGAATACA+GGG 0.558689 1_2:+77233383 Msa0094130:CDS
ACCACATGCACTGCATGTCA+TGG 0.560741 1_2:-77239275 None:intergenic
TTGACTACCCTCAAAGTATG+TGG 0.562300 1_2:-77243897 None:intergenic
TCTTCTTTATACAATCACCC+TGG 0.564622 1_2:+77236688 Msa0094130:CDS
GTTTCACTAATAGTCAAGCT+TGG 0.567959 1_2:+77235533 Msa0094130:CDS
AGAAGGCGAGAAATTGTACC+AGG 0.569067 1_2:+77235565 Msa0094130:CDS
AGTTTCTCACTGTCAGTCAC+AGG 0.569951 1_2:-77242231 None:intergenic
AAGAGATTGGCCTCTTTAGG+AGG 0.574538 1_2:-77231803 None:intergenic
CGATACGACGACGACGACAA+TGG 0.575166 1_2:+77231769 Msa0094130:exon
TATCTGGCTTTGTTGAGACT+CGG 0.575446 1_2:+77234151 Msa0094130:CDS
CTGAAAGCTACTTCCGCCAA+GGG 0.579891 1_2:+77239407 Msa0094130:CDS
GGTGACCCTTGCTGGGAAGT+GGG 0.580273 1_2:-77244077 None:intergenic
TAAGAACATTACCTTGACAC+AGG 0.582424 1_2:-77242695 None:intergenic
GGACGACCGGTCAATACCCT+GGG 0.584275 1_2:+77236883 Msa0094130:CDS
GTACATACCTTAGTTAGGAG+AGG 0.585549 1_2:-77236559 None:intergenic
GAAGCTAGGTGTATGGATCT+CGG 0.586254 1_2:+77239023 Msa0094130:CDS
GAAGTTCCCACTTCCCAGCA+AGG 0.587282 1_2:+77244071 Msa0094130:three_prime_UTR
CGCACTTTCTAAAATCAATG+AGG 0.587661 1_2:+77238017 Msa0094130:CDS
ATATAACCTGCACCAAAACT+CGG 0.589930 1_2:-77244098 None:intergenic
TTGATGCTCAGATATTATGA+AGG 0.590942 1_2:+77235993 Msa0094130:intron
ATTAATTTATGTGAAACCGT+TGG 0.591246 1_2:+77244452 Msa0094130:three_prime_UTR
AGTGCTATCGAAATGCACTA+AGG 0.592014 1_2:+77233415 Msa0094130:CDS
CATTGATCTATACTCTGCCA+AGG 0.592355 1_2:+77238062 Msa0094130:CDS
CTAGTGGGATATCAAAGTCT+GGG 0.592509 1_2:+77240731 Msa0094130:CDS
AGTCGGATACTGAAGCATGC+TGG 0.596408 1_2:+77238969 Msa0094130:CDS
GAAAATGAACGGATTGAGCA+TGG 0.597771 1_2:+77234952 Msa0094130:CDS
CATCATCATCCTAGGTAGCA+GGG 0.598142 1_2:+77244289 Msa0094130:three_prime_UTR
GATTCATGGAAAGCAATGCC+TGG 0.598332 1_2:-77235583 None:intergenic
AGCGAGAGAAACAGAGAAAG+GGG 0.599948 1_2:-77231724 None:intergenic
GCTTGGATATAAAGAACAAG+AGG 0.601096 1_2:+77235511 Msa0094130:CDS
CTTTCTCAACTCCAACCCAA+TGG 0.604328 1_2:-77231562 None:intergenic
ACAGCCCAAGATCCCCTTGG+CGG 0.605056 1_2:-77239420 None:intergenic
GCTGAAAGCTACTTCCGCCA+AGG 0.605952 1_2:+77239406 Msa0094130:CDS
GAGTATAGATCAATGACAGT+AGG 0.608324 1_2:-77238054 None:intergenic
ATGAAGAATCAAGTGCTAGT+GGG 0.610647 1_2:+77240716 Msa0094130:CDS
TTAACAGATTAATACCTGGA+AGG 0.610922 1_2:-77241688 None:intergenic
TTACCTCCCAGGGTATTGAC+CGG 0.611377 1_2:-77236889 None:intergenic
ATTATCCTCCAGAAAATGAA+CGG 0.612529 1_2:+77234941 Msa0094130:CDS
TCCTCCAAAGTCAACAGCTG+AGG 0.613649 1_2:+77240514 Msa0094130:CDS
TCGAGGGATATTGAAGAGCA+GGG 0.614516 1_2:+77244254 Msa0094130:three_prime_UTR
AAGTTCCCACTTCCCAGCAA+GGG 0.615175 1_2:+77244072 Msa0094130:three_prime_UTR
TCTGTAAGCAGTCAGCTGCA+CGG 0.615237 1_2:+77242428 Msa0094130:intron
GCGGAAGTAGCTTTCAGCAG+AGG 0.615510 1_2:-77239401 None:intergenic
CAACAAATAACCCTGTGTCA+AGG 0.618378 1_2:+77242684 Msa0094130:CDS
TGCTAGTTTGCCGTTTGATG+TGG 0.618979 1_2:-77244017 None:intergenic
ATTGAGAGCAGAGTTGGGCG+AGG 0.623382 1_2:-77243927 None:intergenic
GAGACAGCCCAAGATCCCCT+TGG 0.625283 1_2:-77239423 None:intergenic
AAATTCTGGAAGCATATGAA+GGG 0.625919 1_2:+77234905 Msa0094130:CDS
GCATATGAACTGGTTCGCCA+AGG 0.627386 1_2:+77233218 Msa0094130:CDS
AGATCCCAATAGAAGAGCTG+AGG 0.627427 1_2:+77242640 Msa0094130:CDS
CCAAACAACGATGAGAATCA+GGG 0.630162 1_2:-77241987 None:intergenic
GTGCAGCATTATGACAGGCG+CGG 0.630371 1_2:+77237982 Msa0094130:intron
TAATTAAACTAACCTTCCCA+GGG 0.634244 1_2:-77236705 None:intergenic
GCACGGGAAATCTCTTCTTG+AGG 0.643619 1_2:+77242445 Msa0094130:CDS
CACTTGGGCAGCAATTTAAG+CGG 0.644541 1_2:+77236099 Msa0094130:CDS
ATTTCTGGTCCTGCATACGG+CGG 0.654643 1_2:+77244331 Msa0094130:three_prime_UTR
GGTAGTTCTAGCCATTCACC+GGG 0.665168 1_2:+77243974 Msa0094130:CDS
ACTTAAGTAGGGTTGCACAC+TGG 0.665300 1_2:+77231588 Msa0094130:five_prime_UTR
AAGAACATTACCTTGACACA+GGG 0.665893 1_2:-77242694 None:intergenic
TCAACTCCAACCCAATGGAG+AGG 0.667278 1_2:-77231557 None:intergenic
GATTCCACAACGTTATCACC+CGG 0.667897 1_2:-77243992 None:intergenic
TCCATGACATGCAGTGCATG+TGG 0.669899 1_2:+77239274 Msa0094130:CDS
TTCACCGGGTGATAACGTTG+TGG 0.670577 1_2:+77243988 Msa0094130:CDS
CCATGCTAGAACTCAACCAA+CGG 0.672602 1_2:-77244468 None:intergenic
CGTGCTATTCACAAAAGACG+GGG 0.674671 1_2:+77239236 Msa0094130:CDS
CTGTTGATCCAGATCCTCGG+GGG 0.682883 1_2:+77240770 Msa0094130:CDS
ATACCCTGTACAAAACACTT+GGG 0.694875 1_2:+77236084 Msa0094130:CDS
CGACCGGTCAATACCCTGGG+AGG 0.697296 1_2:+77236886 Msa0094130:CDS
TGTTGATCCAGATCCTCGGG+GGG 0.715221 1_2:+77240771 Msa0094130:CDS
GCTAGAACTACCATTTACGG+TGG 0.715343 1_2:-77243963 None:intergenic
TGAAAGCTACTTCCGCCAAG+GGG 0.721495 1_2:+77239408 Msa0094130:CDS
TCGTATCGGAGTGAGTTGGG+AGG 0.733987 1_2:-77231754 None:intergenic
ACATGCACTGCATGTCATGG+AGG 0.744439 1_2:-77239272 None:intergenic
CCTGTTGATCCAGATCCTCG+GGG 0.759458 1_2:+77240769 Msa0094130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAGTTAATTTTTTTTTTC+CGG + chr1_2:77232313-77232332 Msa0094130:intron 10.0%
!! AATTTAATAATCATTGTTAT+TGG + chr1_2:77232664-77232683 Msa0094130:intron 10.0%
!!! ATTTAATAATCATTGTTATT+GGG + chr1_2:77232665-77232684 Msa0094130:intron 10.0%
!!! TTTATTTCTTTGTTATATTT+TGG + chr1_2:77233025-77233044 Msa0094130:intron 10.0%
!!! AAACTATATTAAAATTTTCA+AGG + chr1_2:77234592-77234611 Msa0094130:intron 10.0%
!! CATTTATTCATATAAAATAA+TGG - chr1_2:77234722-77234741 None:intergenic 10.0%
!!! CATTATTTTATATGAATAAA+TGG + chr1_2:77234720-77234739 Msa0094130:intron 10.0%
!! AACAATAAAAAAATGTAAAA+AGG - chr1_2:77235047-77235066 None:intergenic 10.0%
!!! TTTTTTGTTATATAATGTTT+AGG + chr1_2:77235863-77235882 Msa0094130:intron 10.0%
!!! TTTGTTATCTTTTATATAAT+TGG + chr1_2:77239628-77239647 Msa0094130:intron 10.0%
!! ATTTAAATTTAAAGAGTTTA+AGG + chr1_2:77241785-77241804 Msa0094130:intron 10.0%
!! TTTAAATTTAAAGAGTTTAA+GGG + chr1_2:77241786-77241805 Msa0094130:intron 10.0%
!! TCAAATAAAAAAATAGAAAT+GGG - chr1_2:77243043-77243062 None:intergenic 10.0%
!! TTCAAATAAAAAAATAGAAA+TGG - chr1_2:77243044-77243063 None:intergenic 10.0%
!!! TTTTTTTATATAAAAGAACA+AGG + chr1_2:77243549-77243568 Msa0094130:intron 10.0%
!!! ATTTAATTATGTGAAAATTT+TGG + chr1_2:77244415-77244434 Msa0094130:three_prime_UTR 10.0%
!! TAAGCATAAAAAAAAATCTA+GGG - chr1_2:77231902-77231921 None:intergenic 15.0%
!!! TTTTTTTTATTGAAATTGGA+AGG + chr1_2:77232146-77232165 Msa0094130:intron 15.0%
!!! TTTTTTTATTGAAATTGGAA+GGG + chr1_2:77232147-77232166 Msa0094130:intron 15.0%
!! ATACTTGAATTTGAATTTAT+TGG + chr1_2:77232190-77232209 Msa0094130:intron 15.0%
!!! ATTGAATTTTATTTTCCTAT+GGG - chr1_2:77232621-77232640 None:intergenic 15.0%
!! TCTTAATTATAATGTTTCAT+TGG + chr1_2:77233098-77233117 Msa0094130:intron 15.0%
!! CTTAATTATAATGTTTCATT+GGG + chr1_2:77233099-77233118 Msa0094130:intron 15.0%
!!! ATAAAATTCTTGTTTCTATA+TGG + chr1_2:77233493-77233512 Msa0094130:intron 15.0%
!!! TTATTTTACATCAAAGTAAA+TGG + chr1_2:77234259-77234278 Msa0094130:intron 15.0%
!!! AAATTAAACAACAGAAATTT+TGG - chr1_2:77234352-77234371 None:intergenic 15.0%
!!! TATTTGAAATTTTAGTACAA+AGG + chr1_2:77234535-77234554 Msa0094130:intron 15.0%
!!! ATTTGAAATTTTAGTACAAA+GGG + chr1_2:77234536-77234555 Msa0094130:intron 15.0%
!!! ATTCATATAAAATAATGGAA+GGG - chr1_2:77234717-77234736 None:intergenic 15.0%
!!! TATTCATATAAAATAATGGA+AGG - chr1_2:77234718-77234737 None:intergenic 15.0%
!! AAAAAAATAAAGTCACAAAA+AGG - chr1_2:77235769-77235788 None:intergenic 15.0%
!! TAATTTAACTACAAAAACTT+AGG - chr1_2:77236454-77236473 None:intergenic 15.0%
!! TCTCTGATAAAAAAAAATAT+CGG - chr1_2:77236479-77236498 None:intergenic 15.0%
!! TATTGTAATACTGTATATTA+TGG + chr1_2:77236765-77236784 Msa0094130:intron 15.0%
!! AAAATATATAACACATTATG+CGG + chr1_2:77237279-77237298 Msa0094130:intron 15.0%
!! TAATACTTATGTATGAATTA+TGG + chr1_2:77237492-77237511 Msa0094130:intron 15.0%
!!! TATTTTTATTACCAAGAAAA+AGG + chr1_2:77238795-77238814 Msa0094130:intron 15.0%
!!! TATTGATTTATTTCCTTTTT+AGG + chr1_2:77240678-77240697 Msa0094130:intron 15.0%
!!! AATTTAAATTTCTAGGAAAA+CGG - chr1_2:77241774-77241793 None:intergenic 15.0%
!! CTCTTTAAATTTAAATTTCT+AGG - chr1_2:77241781-77241800 None:intergenic 15.0%
!! TTAAATTTAAAGAGTTTAAG+GGG + chr1_2:77241787-77241806 Msa0094130:intron 15.0%
!!! ACAATATATTCTGAAAAAAT+GGG - chr1_2:77242076-77242095 None:intergenic 15.0%
!!! TTTACAGTTTTTTAGATTAA+TGG + chr1_2:77242353-77242372 Msa0094130:intron 15.0%
!! TTTATGTTCCATTAATATTA+AGG + chr1_2:77243465-77243484 Msa0094130:intron 15.0%
!! GTAAGCATAAAAAAAAATCT+AGG - chr1_2:77231903-77231922 None:intergenic 20.0%
!! AAAAAGATACTTATCTAAAC+AGG - chr1_2:77232249-77232268 None:intergenic 20.0%
!!! TTGAATTTTATTTTCCTATG+GGG - chr1_2:77232620-77232639 None:intergenic 20.0%
!!! CATTGAATTTTATTTTCCTA+TGG - chr1_2:77232622-77232641 None:intergenic 20.0%
!! AGAAATAAAATATTCAAGAC+AGG - chr1_2:77233014-77233033 None:intergenic 20.0%
!! TATAATTAAGATATGAAGAG+AGG - chr1_2:77233089-77233108 None:intergenic 20.0%
!! AAAGTTGAAAGATTGATAAA+TGG - chr1_2:77233273-77233292 None:intergenic 20.0%
!! AGACATAAACAAATTTAGAT+AGG - chr1_2:77233745-77233764 None:intergenic 20.0%
!! TTCAATTACATATATCATTC+TGG - chr1_2:77233861-77233880 None:intergenic 20.0%
!! TTTAATAGTAAATACTACAG+TGG + chr1_2:77234415-77234434 Msa0094130:intron 20.0%
!!! ATGCCTTTTTTTTTTCTTTT+CGG + chr1_2:77234686-77234705 Msa0094130:intron 20.0%
!! AAACCGAAAAGAAAAAAAAA+AGG - chr1_2:77234692-77234711 None:intergenic 20.0%
!!! TGGTGAAATGATTTTATATA+AGG + chr1_2:77234972-77234991 Msa0094130:CDS 20.0%
!! TATAGTTATCATTATGCATA+AGG - chr1_2:77235165-77235184 None:intergenic 20.0%
!! AAATATTATTTGACTAGAGT+CGG - chr1_2:77235205-77235224 None:intergenic 20.0%
!! AAAAAGGAAACAATAAAAGT+AGG - chr1_2:77235686-77235705 None:intergenic 20.0%
!!! CTTTATTTTTTTTGTGAATC+TGG + chr1_2:77235777-77235796 Msa0094130:intron 20.0%
!!! AATTGACTGTTCAAATATTT+TGG + chr1_2:77236732-77236751 Msa0094130:intron 20.0%
!!! CGATTTTACATAAAACATTT+TGG - chr1_2:77237099-77237118 None:intergenic 20.0%
!! ATTCTTTAAATTGAGTAAGA+TGG - chr1_2:77237238-77237257 None:intergenic 20.0%
!!! ACCAATATCATAAATTTTTG+TGG + chr1_2:77237342-77237361 Msa0094130:intron 20.0%
!!! CCAATATCATAAATTTTTGT+GGG + chr1_2:77237343-77237362 Msa0094130:intron 20.0%
!! AACAATATCCAAAATAGATA+GGG - chr1_2:77237413-77237432 None:intergenic 20.0%
!! AAACAATATCCAAAATAGAT+AGG - chr1_2:77237414-77237433 None:intergenic 20.0%
!!! CTATTTTGGATATTGTTTAT+TGG + chr1_2:77237416-77237435 Msa0094130:intron 20.0%
!! TCTATCATCAAAAACTATAA+GGG - chr1_2:77237609-77237628 None:intergenic 20.0%
!! TTCTATCATCAAAAACTATA+AGG - chr1_2:77237610-77237629 None:intergenic 20.0%
!!! GTATAATTTTTTAGCCAATT+TGG - chr1_2:77237684-77237703 None:intergenic 20.0%
!!! TTCTTACTCTGAAATTTTAT+TGG + chr1_2:77237960-77237979 Msa0094130:intron 20.0%
!! GTTTATTTATAATTCGCTTT+CGG + chr1_2:77238084-77238103 Msa0094130:intron 20.0%
!!! TAAAATAGTTTTCTAATGTC+AGG - chr1_2:77238360-77238379 None:intergenic 20.0%
!! TTTAGAAACTATTGTTTGTT+TGG + chr1_2:77238516-77238535 Msa0094130:intron 20.0%
!!! TCACTTTTAACTTTAAAAGA+TGG + chr1_2:77238554-77238573 Msa0094130:intron 20.0%
!! TTAAAAGATGGTTGTAATTA+TGG + chr1_2:77238566-77238585 Msa0094130:intron 20.0%
!! AGTATGAATGAAAATCAAAT+TGG - chr1_2:77239498-77239517 None:intergenic 20.0%
!! AATAATTTCTGTAGCTTATA+TGG + chr1_2:77240628-77240647 Msa0094130:intron 20.0%
!! GCAAATATAAGAATGTTAAT+AGG - chr1_2:77240834-77240853 None:intergenic 20.0%
!!! TGTATCAAGAAATTTAAAAC+AGG - chr1_2:77240878-77240897 None:intergenic 20.0%
!! TTATCAGAAGAAAAAAAATC+AGG - chr1_2:77241477-77241496 None:intergenic 20.0%
!!! ACTTCTTGTTATCATAATTT+AGG + chr1_2:77241499-77241518 Msa0094130:intron 20.0%
!!! TTTTCTCATGTATAATTCAA+AGG - chr1_2:77241652-77241671 None:intergenic 20.0%
!! TTCTTTATCTTTCTATTTGT+AGG + chr1_2:77241930-77241949 Msa0094130:intron 20.0%
!!! TTTAAAGCAATTACTAAGAT+TGG + chr1_2:77241954-77241973 Msa0094130:CDS 20.0%
!!! GACAATATATTCTGAAAAAA+TGG - chr1_2:77242077-77242096 None:intergenic 20.0%
!! ATTAAATTCTTCCATAAAGT+GGG + chr1_2:77242195-77242214 Msa0094130:CDS 20.0%
!!! TAGTTTTCTAATATGTCTAA+TGG + chr1_2:77243282-77243301 Msa0094130:intron 20.0%
!!! ATATTTCATTCTAAAAGCAA+TGG + chr1_2:77243321-77243340 Msa0094130:intron 20.0%
!! TTTAATCTTGAAAAGTAATG+TGG - chr1_2:77243493-77243512 None:intergenic 20.0%
!! ATATAAAAGAACAAGGAAAA+AGG + chr1_2:77243556-77243575 Msa0094130:intron 20.0%
!!! AAAAACTTTAAAATTGCGTA+AGG - chr1_2:77243650-77243669 None:intergenic 20.0%
!! AAATTATACACATTTGCAAA+TGG - chr1_2:77244193-77244212 None:intergenic 20.0%
!!! TGTGTATAATTTTATCTCTT+AGG + chr1_2:77244201-77244220 Msa0094130:three_prime_UTR 20.0%
!!! GTGTATAATTTTATCTCTTA+GGG + chr1_2:77244202-77244221 Msa0094130:three_prime_UTR 20.0%
!!! GGTTGAATTTTTTATTTGAT+CGG + chr1_2:77244223-77244242 Msa0094130:three_prime_UTR 20.0%
!!! CTACTGAAATTTTAAATTTC+TGG + chr1_2:77244316-77244335 Msa0094130:three_prime_UTR 20.0%
!!! TAAAGACTTATTTCCATTTT+TGG + chr1_2:77244521-77244540 Msa0094130:three_prime_UTR 20.0%
! GAATTGAATTTGAGAGATTA+TGG - chr1_2:77231652-77231671 None:intergenic 25.0%
!! AATCTAGGGTTTATGAAAAA+GGG - chr1_2:77231888-77231907 None:intergenic 25.0%
!! AAATCTAGGGTTTATGAAAA+AGG - chr1_2:77231889-77231908 None:intergenic 25.0%
! CACTAATTCGATTAATTTAG+TGG - chr1_2:77231942-77231961 None:intergenic 25.0%
!! GATTACATGGATTAATTACT+TGG + chr1_2:77232100-77232119 Msa0094130:intron 25.0%
! TGTGTTATATGATTTAACTC+CGG + chr1_2:77232545-77232564 Msa0094130:intron 25.0%
!! ATCATTGTTATTGGGAATTT+AGG + chr1_2:77232673-77232692 Msa0094130:intron 25.0%
!! TTTGTATTGTTTGGTTTCAT+AGG - chr1_2:77232760-77232779 None:intergenic 25.0%
! TGAAACCAAACAATACAAAA+AGG + chr1_2:77232761-77232780 Msa0094130:CDS 25.0%
! GAAACCAAACAATACAAAAA+GGG + chr1_2:77232762-77232781 Msa0094130:CDS 25.0%
!!! ATCTGGAAACTTTTTCAAAA+TGG - chr1_2:77232805-77232824 None:intergenic 25.0%
! TTGAAACTTTAACAGAATCA+TGG - chr1_2:77232920-77232939 None:intergenic 25.0%
!! AAAGTTTCAAAGTTTAGCTT+CGG + chr1_2:77232930-77232949 Msa0094130:intron 25.0%
! ATAGAAACTTTATCGATGAA+GGG + chr1_2:77233161-77233180 Msa0094130:intron 25.0%
!! CTAAATTTGTTTATGTCTCT+TGG + chr1_2:77233747-77233766 Msa0094130:intron 25.0%
!!! CTTATATTCATTTTGAGTTC+AGG + chr1_2:77233813-77233832 Msa0094130:intron 25.0%
! TATATGTAATTGAACTATGC+TGG + chr1_2:77233867-77233886 Msa0094130:intron 25.0%
! TGCTGGATTATTAACAATAA+AGG + chr1_2:77233884-77233903 Msa0094130:intron 25.0%
! TGGATTATTAACAATAAAGG+AGG + chr1_2:77233887-77233906 Msa0094130:intron 25.0%
! GGATTATTAACAATAAAGGA+GGG + chr1_2:77233888-77233907 Msa0094130:intron 25.0%
! AAGAAATAAGTACATCATAG+AGG - chr1_2:77234081-77234100 None:intergenic 25.0%
!!! ATTTTATTTACCTCATTGAC+AGG + chr1_2:77234113-77234132 Msa0094130:intron 25.0%
!! TTAGCTACTGGTTATTATAA+AGG - chr1_2:77234313-77234332 None:intergenic 25.0%
! TTTATAATAACCAGTAGCTA+AGG + chr1_2:77234312-77234331 Msa0094130:intron 25.0%
!! CTAAGATGTGTTTGATATTT+TGG - chr1_2:77234469-77234488 None:intergenic 25.0%
! ATATCAATCATAAACTACAG+TGG + chr1_2:77234634-77234653 Msa0094130:intron 25.0%
! GACATGATAGATTGAAATAA+AGG - chr1_2:77234766-77234785 None:intergenic 25.0%
!! TTTATATAAGGTATTTCCTC+TGG + chr1_2:77234984-77235003 Msa0094130:intron 25.0%
! CATTTACTAAAGCTCAAAAA+TGG - chr1_2:77235132-77235151 None:intergenic 25.0%
! CATGATTTCATTACTTGTTT+CGG + chr1_2:77235465-77235484 Msa0094130:intron 25.0%
!!! GTTTCGGATTATATTTTTTC+AGG + chr1_2:77235481-77235500 Msa0094130:intron 25.0%
! AAATTTCACCTATAATTGTC+TGG - chr1_2:77235608-77235627 None:intergenic 25.0%
! ACAATTATAGGTGAAATTTC+TGG + chr1_2:77235609-77235628 Msa0094130:intron 25.0%
! AAAAAACAATACATACTACC+TGG - chr1_2:77235923-77235942 None:intergenic 25.0%
! CATCTTTCTATGAATATGTA+AGG - chr1_2:77235952-77235971 None:intergenic 25.0%
!! TTGTTGTTAAACCAAAAATG+TGG + chr1_2:77236283-77236302 Msa0094130:intron 25.0%
! TGTTGTTAAACCAAAAATGT+GGG + chr1_2:77236284-77236303 Msa0094130:intron 25.0%
!! ACATCATTTATGAATTTTGC+TGG + chr1_2:77236397-77236416 Msa0094130:intron 25.0%
!! ATACCATTAGATTTTCTTCA+AGG + chr1_2:77236499-77236518 Msa0094130:CDS 25.0%
!!! GATTTTGAAGCTTGTAAAAT+AGG - chr1_2:77236610-77236629 None:intergenic 25.0%
!!! TTTCATTTTGTTTCCTTTCT+AGG + chr1_2:77236639-77236658 Msa0094130:intron 25.0%
!!! TTCATTTTGTTTCCTTTCTA+GGG + chr1_2:77236640-77236659 Msa0094130:intron 25.0%
! TGTAATACTGTATATTATGG+TGG + chr1_2:77236768-77236787 Msa0094130:intron 25.0%
! GTAATACTGTATATTATGGT+GGG + chr1_2:77236769-77236788 Msa0094130:intron 25.0%
!!! AAATACCGTTTCTTATTTTG+CGG + chr1_2:77236796-77236815 Msa0094130:intron 25.0%
! TTGAGTTAGAGAATTCTATT+AGG + chr1_2:77236862-77236881 Msa0094130:CDS 25.0%
! AAATCGATAATTCTTTCCTT+CGG + chr1_2:77237113-77237132 Msa0094130:intron 25.0%
! AAAATTTATGATATTGGTGC+AGG - chr1_2:77237340-77237359 None:intergenic 25.0%
! CCCACAAAAATTTATGATAT+TGG - chr1_2:77237346-77237365 None:intergenic 25.0%
!! TAGGGTTTTACCTATTAAAT+GGG - chr1_2:77237395-77237414 None:intergenic 25.0%
!! ATAGGGTTTTACCTATTAAA+TGG - chr1_2:77237396-77237415 None:intergenic 25.0%
! GTATGAATTATGGAAATTGA+TGG + chr1_2:77237502-77237521 Msa0094130:intron 25.0%
! TCAATTTAGGAGAATTTACT+GGG - chr1_2:77237569-77237588 None:intergenic 25.0%
! TTCAATTTAGGAGAATTTAC+TGG - chr1_2:77237570-77237589 None:intergenic 25.0%
!!! AGTTTTGGTTGTTTCAATTT+AGG - chr1_2:77237582-77237601 None:intergenic 25.0%
! ATTGGCTAAAAAATTATACG+TGG + chr1_2:77237685-77237704 Msa0094130:intron 25.0%
! AAATTTCTGTGTCAACTATA+AGG - chr1_2:77237760-77237779 None:intergenic 25.0%
! ATTAACTATCTTGGAATACA+GGG + chr1_2:77237820-77237839 Msa0094130:intron 25.0%
! AGAGTAAGAAAAACAGAAAA+TGG - chr1_2:77237950-77237969 None:intergenic 25.0%
! AGCGAATTATAAATAAACCT+TGG - chr1_2:77238082-77238101 None:intergenic 25.0%
!! AATATAGCAAGAGCATATTT+AGG - chr1_2:77238132-77238151 None:intergenic 25.0%
! TTAAAGAACACTGTTAACTA+TGG + chr1_2:77238195-77238214 Msa0094130:intron 25.0%
!! TACACTTGCTAAAGATAATT+AGG - chr1_2:77238225-77238244 None:intergenic 25.0%
! CTTAAAAAAACTCATACTCT+TGG - chr1_2:77238445-77238464 None:intergenic 25.0%
!!! GTTTTTTTAAGCTTAAACAG+TGG + chr1_2:77238454-77238473 Msa0094130:intron 25.0%
! TATTTCTCTAGTCATTTGAA+AGG + chr1_2:77238702-77238721 Msa0094130:intron 25.0%
! AAAGGTTACATATAGTTTCA+TGG + chr1_2:77238720-77238739 Msa0094130:intron 25.0%
! ATAGTTTCATGGCTAATAAA+TGG + chr1_2:77238731-77238750 Msa0094130:intron 25.0%
! TAGTTTCATGGCTAATAAAT+GGG + chr1_2:77238732-77238751 Msa0094130:intron 25.0%
! AAAGTGAAAATGAATTGATG+TGG + chr1_2:77238859-77238878 Msa0094130:intron 25.0%
!! GAACTTGATCTTTGTAATTT+TGG + chr1_2:77239129-77239148 Msa0094130:intron 25.0%
!! TTTTATCATCTATCTTACGA+AGG + chr1_2:77239368-77239387 Msa0094130:intron 25.0%
!! ATTTTCATTCATACTGCTTA+AGG + chr1_2:77239503-77239522 Msa0094130:CDS 25.0%
! TGTCCATAATTCAAATTCAA+AGG - chr1_2:77239883-77239902 None:intergenic 25.0%
! AATTCAACTTCTTACTAGAA+AGG + chr1_2:77239931-77239950 Msa0094130:intron 25.0%
! AACCATTAGAAAAGATTTAG+AGG - chr1_2:77240173-77240192 None:intergenic 25.0%
!! TTTTCTAATGGTTTCTCTAA+TGG + chr1_2:77240180-77240199 Msa0094130:intron 25.0%
! TCTTAACTTTATAAGAACCA+AGG - chr1_2:77240295-77240314 None:intergenic 25.0%
! TTTGCAATTTGCATAACATT+TGG + chr1_2:77240326-77240345 Msa0094130:intron 25.0%
! TGTTTATACATACTCCAAAT+TGG - chr1_2:77240409-77240428 None:intergenic 25.0%
! TTGGAGTATGTATAAACAAA+TGG + chr1_2:77240411-77240430 Msa0094130:intron 25.0%
!!! TGATTTATTTCCTTTTTAGG+AGG + chr1_2:77240681-77240700 Msa0094130:intron 25.0%
!! ATAACTCATCCCAATATTTT+GGG - chr1_2:77240943-77240962 None:intergenic 25.0%
!! AATAACTCATCCCAATATTT+TGG - chr1_2:77240944-77240963 None:intergenic 25.0%
! AATATTGGGATGAGTTATTT+AGG + chr1_2:77240945-77240964 Msa0094130:intron 25.0%
!!! TTGTTTGTACTTTGTTGTTT+TGG + chr1_2:77241275-77241294 Msa0094130:intron 25.0%
! ATGTTTAACAGATTAATACC+TGG - chr1_2:77241695-77241714 None:intergenic 25.0%
! AGGTATTAATCTGTTAAACA+TGG + chr1_2:77241694-77241713 Msa0094130:intron 25.0%
! ATAAGCATAAAATCACAACA+AGG - chr1_2:77241815-77241834 None:intergenic 25.0%
! ACTGAATTGCATTCAAAAAA+TGG - chr1_2:77241897-77241916 None:intergenic 25.0%
! TCTTCTGTATTCATTGAATT+TGG + chr1_2:77242017-77242036 Msa0094130:intron 25.0%
! AAAAATGGGACAAAAAAGAA+GGG - chr1_2:77242062-77242081 None:intergenic 25.0%
! AAAAAATGGGACAAAAAAGA+AGG - chr1_2:77242063-77242082 None:intergenic 25.0%
! TTATGGAAGAATTTAATCTG+CGG - chr1_2:77242192-77242211 None:intergenic 25.0%
! GATTAAATTCTTCCATAAAG+TGG + chr1_2:77242194-77242213 Msa0094130:intron 25.0%
! AGTTAGAATTGTTGAAGTTA+TGG - chr1_2:77242394-77242413 None:intergenic 25.0%
! AAACACAAACTTTCATAATC+AGG - chr1_2:77242555-77242574 None:intergenic 25.0%
! TTAATTTCCTTACTTATCTG+TGG + chr1_2:77242853-77242872 Msa0094130:intron 25.0%
! AGTAAAAAAGGAGACAATTA+TGG - chr1_2:77243241-77243260 None:intergenic 25.0%
! ATGTGGATCCTTAATATTAA+TGG - chr1_2:77243476-77243495 None:intergenic 25.0%
! AATAAATCAATAACTGCTGT+AGG + chr1_2:77243512-77243531 Msa0094130:intron 25.0%
! ATAAATCAATAACTGCTGTA+GGG + chr1_2:77243513-77243532 Msa0094130:intron 25.0%
!!! TATTATTTTGAGGAAATGAG+AGG - chr1_2:77243815-77243834 None:intergenic 25.0%
!!! ATGGATGGATTATTATTTTG+AGG - chr1_2:77243825-77243844 None:intergenic 25.0%
! TCAAAATAATAATCCATCCA+TGG + chr1_2:77243824-77243843 Msa0094130:intron 25.0%
!! TGCAGGTTATATCAAATTTT+GGG + chr1_2:77244109-77244128 Msa0094130:three_prime_UTR 25.0%
! ATTAATTTATGTGAAACCGT+TGG + chr1_2:77244452-77244471 Msa0094130:three_prime_UTR 25.0%
!! TTGAGAAAGAGTACTTAAGT+AGG + chr1_2:77231576-77231595 Msa0094130:five_prime_UTR 30.0%
!! TGAGAAAGAGTACTTAAGTA+GGG + chr1_2:77231577-77231596 Msa0094130:five_prime_UTR 30.0%
AACAATGAGTTTGAAGAGAT+TGG - chr1_2:77231819-77231838 None:intergenic 30.0%
CAATGTGTTTGTAGATTACA+TGG + chr1_2:77232087-77232106 Msa0094130:intron 30.0%
CAGGAACAAAAAGAAAACAA+TGG - chr1_2:77232216-77232235 None:intergenic 30.0%
TGAAAACAGCTTATAACTAC+CGG - chr1_2:77232335-77232354 None:intergenic 30.0%
!! GCTGTTTTCATAATCTATCT+TGG + chr1_2:77232345-77232364 Msa0094130:intron 30.0%
CAATGTCTCATTTGAAGAAT+GGG + chr1_2:77232496-77232515 Msa0094130:intron 30.0%
AATGTCTCATTTGAAGAATG+GGG + chr1_2:77232497-77232516 Msa0094130:intron 30.0%
GTGTTATATGATTTAACTCC+GGG + chr1_2:77232546-77232565 Msa0094130:intron 30.0%
TGTTATATGATTTAACTCCG+GGG + chr1_2:77232547-77232566 Msa0094130:intron 30.0%
AGTGAAATGCTATTGTTATG+TGG + chr1_2:77232699-77232718 Msa0094130:intron 30.0%
GTGAAATGCTATTGTTATGT+GGG + chr1_2:77232700-77232719 Msa0094130:intron 30.0%
TGAAATGCTATTGTTATGTG+GGG + chr1_2:77232701-77232720 Msa0094130:intron 30.0%
TTGAAAAAGTTTCCAGATCA+TGG + chr1_2:77232807-77232826 Msa0094130:CDS 30.0%
AAAGTTTCTATCAACCAGAA+GGG - chr1_2:77233152-77233171 None:intergenic 30.0%
TAAAGTTTCTATCAACCAGA+AGG - chr1_2:77233153-77233172 None:intergenic 30.0%
GATAGAAACTTTATCGATGA+AGG + chr1_2:77233160-77233179 Msa0094130:intron 30.0%
! TAAATCTGAAGCATATGAAC+TGG + chr1_2:77233208-77233227 Msa0094130:CDS 30.0%
ATGTTTATGGTCTTCTCTAT+CGG + chr1_2:77233364-77233383 Msa0094130:CDS 30.0%
CGTAAGATTTCAATATTGTC+AGG - chr1_2:77233447-77233466 None:intergenic 30.0%
TCTTTCACAAGCATCATATT+TGG + chr1_2:77233591-77233610 Msa0094130:intron 30.0%
! TGAAGAAGCATGTTTATGTT+CGG - chr1_2:77233624-77233643 None:intergenic 30.0%
ATAAACATGCTTCTTCATGT+TGG + chr1_2:77233627-77233646 Msa0094130:intron 30.0%
AGAGTTCAAATGATGTGAAA+CGG - chr1_2:77234229-77234248 None:intergenic 30.0%
TTACAATATAAAGGAAGGAG+AGG - chr1_2:77234495-77234514 None:intergenic 30.0%
CTCCTTCCTTTATATTGTAA+CGG + chr1_2:77234495-77234514 Msa0094130:intron 30.0%
TCCTTCCTTTATATTGTAAC+GGG + chr1_2:77234496-77234515 Msa0094130:intron 30.0%
TTTCAAATAACATCTCTCTG+TGG - chr1_2:77234524-77234543 None:intergenic 30.0%
TGAATAAATGGTGCATAGAA+AGG + chr1_2:77234732-77234751 Msa0094130:intron 30.0%
ATCGAAAGCTATTGAAATTC+TGG + chr1_2:77234891-77234910 Msa0094130:CDS 30.0%
! AAATTCTGGAAGCATATGAA+GGG + chr1_2:77234905-77234924 Msa0094130:CDS 30.0%
ATTATCCTCCAGAAAATGAA+CGG + chr1_2:77234941-77234960 Msa0094130:CDS 30.0%
!! AGATTTTGCTATACGATGAT+AGG + chr1_2:77235088-77235107 Msa0094130:intron 30.0%
! ACGATGATAGGATTTTGAAT+TGG + chr1_2:77235100-77235119 Msa0094130:intron 30.0%
!!! TTTTTTCAGGTTGATAAGCT+TGG + chr1_2:77235494-77235513 Msa0094130:intron 30.0%
ATGCATAATAATTCCTTTCC+AGG + chr1_2:77235902-77235921 Msa0094130:intron 30.0%
TTGATGCTCAGATATTATGA+AGG + chr1_2:77235993-77236012 Msa0094130:intron 30.0%
GTTGGGTTATATTCAGAAAA+TGG + chr1_2:77236029-77236048 Msa0094130:CDS 30.0%
TCTAATCGATCTATTTCATC+AGG - chr1_2:77236065-77236084 None:intergenic 30.0%
ATTGTTATGCATGAAGATGA+AGG - chr1_2:77236199-77236218 None:intergenic 30.0%
TCATAAATGATGTAGCAACA+AGG - chr1_2:77236390-77236409 None:intergenic 30.0%
! TCAATGCAAGTAGTGTTATT+TGG + chr1_2:77236420-77236439 Msa0094130:intron 30.0%
TAACTACAAAAACTTAGGTG+AGG - chr1_2:77236449-77236468 None:intergenic 30.0%
TCACCTTGAAGAAAATCTAA+TGG - chr1_2:77236505-77236524 None:intergenic 30.0%
AAGCAGCAGATAGTTATATT+AGG + chr1_2:77236536-77236555 Msa0094130:CDS 30.0%
GATTTGTACATACCTTAGTT+AGG - chr1_2:77236567-77236586 None:intergenic 30.0%
GGAAGAAAATTATACCAAAG+AGG - chr1_2:77236589-77236608 None:intergenic 30.0%
TAATTAAACTAACCTTCCCA+GGG - chr1_2:77236708-77236727 None:intergenic 30.0%
!!! AATACCGTTTCTTATTTTGC+GGG + chr1_2:77236797-77236816 Msa0094130:intron 30.0%
! CATTTAGCAATGTGTTTTTC+AGG - chr1_2:77237213-77237232 None:intergenic 30.0%
! AGGTAAAACCCTATCTATTT+TGG + chr1_2:77237402-77237421 Msa0094130:intron 30.0%
!! ATTGTTTATTGGTTCCCATT+AGG + chr1_2:77237427-77237446 Msa0094130:intron 30.0%
ATACATAAGTATTACCATCC+TGG - chr1_2:77237486-77237505 None:intergenic 30.0%
TGACATGTAAAACCATTAGA+TGG - chr1_2:77237530-77237549 None:intergenic 30.0%
TACATGTCACATATGTATTG+TGG + chr1_2:77237541-77237560 Msa0094130:intron 30.0%
! AACTATAAGGGTCAAAGTTT+TGG - chr1_2:77237597-77237616 None:intergenic 30.0%
! AAAAATTATACGTGGTGGAA+AGG + chr1_2:77237693-77237712 Msa0094130:intron 30.0%
! TTTGAACTTGTATTTTGTGC+TGG + chr1_2:77237787-77237806 Msa0094130:intron 30.0%
TCACTAACCATTAACTATCT+TGG + chr1_2:77237811-77237830 Msa0094130:intron 30.0%
CTGTATTCCAAGATAGTTAA+TGG - chr1_2:77237821-77237840 None:intergenic 30.0%
CATTAACTATCTTGGAATAC+AGG + chr1_2:77237819-77237838 Msa0094130:intron 30.0%
AAGTCCACAAAAAAGTTGAA+GGG - chr1_2:77237859-77237878 None:intergenic 30.0%
AAAGTCCACAAAAAAGTTGA+AGG - chr1_2:77237860-77237879 None:intergenic 30.0%
!! TCAGGTTTGTGACTATTTTT+GGG + chr1_2:77237892-77237911 Msa0094130:intron 30.0%
! TAGAAAGTGCGATTTCATAT+TGG - chr1_2:77238008-77238027 None:intergenic 30.0%
CATTTCGTTTCAAAACCTTT+GGG + chr1_2:77238288-77238307 Msa0094130:intron 30.0%
!! AAGCTTAAACAGTGGTTTTA+AGG + chr1_2:77238462-77238481 Msa0094130:intron 30.0%
TGAAAATGAATTGATGTGGT+TGG + chr1_2:77238863-77238882 Msa0094130:intron 30.0%
GAAAATGAATTGATGTGGTT+GGG + chr1_2:77238864-77238883 Msa0094130:intron 30.0%
CTATTAAGTGAAGACACAAA+TGG + chr1_2:77239817-77239836 Msa0094130:intron 30.0%
AGGCCTTTGAATTTGAATTA+TGG + chr1_2:77239877-77239896 Msa0094130:intron 30.0%
TTGAATTATGGACAATGCTT+TGG + chr1_2:77239889-77239908 Msa0094130:intron 30.0%
AGAAGTTGAATTTCTACACA+TGG - chr1_2:77239923-77239942 None:intergenic 30.0%
! TGGTTTTTGATAGAACACTA+TGG - chr1_2:77240129-77240148 None:intergenic 30.0%
! CAATGAGTTGGATTCAAATA+TGG - chr1_2:77240149-77240168 None:intergenic 30.0%
! GACCTCTAAATCTTTTCTAA+TGG + chr1_2:77240168-77240187 Msa0094130:intron 30.0%
! GTTTCTCTAATGGTTTTCTT+AGG + chr1_2:77240190-77240209 Msa0094130:intron 30.0%
! GCTTAAAGCAACATCTTTTT+GGG + chr1_2:77240369-77240388 Msa0094130:intron 30.0%
! TTCAATTTCTTTTTCTGAGC+AGG - chr1_2:77240566-77240585 None:intergenic 30.0%
ATTGAAGCAAAAACAGAGAA+AGG + chr1_2:77240580-77240599 Msa0094130:CDS 30.0%
AACCAATTCTCCCAAAATAT+TGG + chr1_2:77240930-77240949 Msa0094130:intron 30.0%
ACCAATTCTCCCAAAATATT+GGG + chr1_2:77240931-77240950 Msa0094130:intron 30.0%
! AAGTTGATCTCTTTCCAATT+AGG + chr1_2:77241060-77241079 Msa0094130:intron 30.0%
!! GTGTAGTGGATTCAAAAATT+TGG + chr1_2:77241390-77241409 Msa0094130:intron 30.0%
GGAAAAATTGCACATTAAAC+AGG - chr1_2:77241536-77241555 None:intergenic 30.0%
TTAACAGATTAATACCTGGA+AGG - chr1_2:77241691-77241710 None:intergenic 30.0%
AAAATGGGACAAAAAAGAAG+GGG - chr1_2:77242061-77242080 None:intergenic 30.0%
GAAACAAAATCACAATAGAG+AGG - chr1_2:77242111-77242130 None:intergenic 30.0%
AGAAAGATAATCCATTTCGT+TGG - chr1_2:77242142-77242161 None:intergenic 30.0%
TCTTTCTTGTGTTGTCTTTA+AGG + chr1_2:77242321-77242340 Msa0094130:intron 30.0%
CTTTCTTGTGTTGTCTTTAA+GGG + chr1_2:77242322-77242341 Msa0094130:intron 30.0%
TGCTTACAGATGAATAAAAG+AGG - chr1_2:77242418-77242437 None:intergenic 30.0%
!!! CTTCATGTTTTTCAAGGAAA+AGG - chr1_2:77242478-77242497 None:intergenic 30.0%
! CTTTTCCTTGAAAAACATGA+AGG + chr1_2:77242476-77242495 Msa0094130:CDS 30.0%
! TATGACCTTCATGTTTTTCA+AGG - chr1_2:77242484-77242503 None:intergenic 30.0%
CAGGCTTAAAACATATAACA+CGG - chr1_2:77242536-77242555 None:intergenic 30.0%
!!! TTTTTTCCTGTTTTGTTTGC+AGG + chr1_2:77242572-77242591 Msa0094130:intron 30.0%
TCTTCAAACTCATATGACAT+TGG + chr1_2:77242778-77242797 Msa0094130:intron 30.0%
TGATGCAAAACTGTATATTG+TGG + chr1_2:77242805-77242824 Msa0094130:intron 30.0%
TCACATTTCACTCATTGTTT+GGG - chr1_2:77242909-77242928 None:intergenic 30.0%
TTCACATTTCACTCATTGTT+TGG - chr1_2:77242910-77242929 None:intergenic 30.0%
TGATTGTACATGAGATGATT+TGG + chr1_2:77242947-77242966 Msa0094130:intron 30.0%
! TGTTATTTAGCAATGAAGAG+TGG - chr1_2:77243011-77243030 None:intergenic 30.0%
AAAAAATAGAAATGGGACAG+TGG - chr1_2:77243036-77243055 None:intergenic 30.0%
AAAAATTCCCTACTGCTAAA+AGG + chr1_2:77243062-77243081 Msa0094130:intron 30.0%
! ATGTGCTATTCTATAACTCT+GGG + chr1_2:77243169-77243188 Msa0094130:intron 30.0%
CCAGAGAAGAAAAGTAAAAA+AGG - chr1_2:77243253-77243272 None:intergenic 30.0%
!!! CCTTTTTTACTTTTCTTCTC+TGG + chr1_2:77243250-77243269 Msa0094130:intron 30.0%
ATTGCAGTTCATAAACTTCT+TGG + chr1_2:77243384-77243403 Msa0094130:CDS 30.0%
TAAATAAGAACTGATCCAGA+TGG - chr1_2:77243449-77243468 None:intergenic 30.0%
! CTTTTGAATCTTGTCATTCA+TGG + chr1_2:77243611-77243630 Msa0094130:intron 30.0%
ACTTAAAATTCTCCTTTGCA+GGG - chr1_2:77243707-77243726 None:intergenic 30.0%
CATTACAAGGTTAACATACA+GGG - chr1_2:77243781-77243800 None:intergenic 30.0%
! ATTTTATTGAGAGCAGAGTT+GGG - chr1_2:77243935-77243954 None:intergenic 30.0%
! TATTTTATTGAGAGCAGAGT+TGG - chr1_2:77243936-77243955 None:intergenic 30.0%
! GTGCAGGTTATATCAAATTT+TGG + chr1_2:77244108-77244127 Msa0094130:three_prime_UTR 30.0%
GGAATACAAATCAGTTTAGA+GGG - chr1_2:77244172-77244191 None:intergenic 30.0%
TGGAATACAAATCAGTTTAG+AGG - chr1_2:77244173-77244192 None:intergenic 30.0%
ACGATAAAGAAGCTAACAAA+TGG - chr1_2:77244387-77244406 None:intergenic 30.0%
TTTGTAGATTCCTCTCCATT+GGG + chr1_2:77231547-77231566 Msa0094130:five_prime_UTR 35.0%
GGGAAGAAAGTAGAAGAAAT+TGG - chr1_2:77231868-77231887 None:intergenic 35.0%
! TCTTTTTGTTCCTGCTTCTA+TGG + chr1_2:77232222-77232241 Msa0094130:intron 35.0%
! CTTTTTGTTCCTGCTTCTAT+GGG + chr1_2:77232223-77232242 Msa0094130:intron 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr1_2:77232471-77232490 Msa0094130:intron 35.0%
CCATTCTTCAAATGAGACAT+TGG - chr1_2:77232498-77232517 None:intergenic 35.0%
CCAATGTCTCATTTGAAGAA+TGG + chr1_2:77232495-77232514 Msa0094130:intron 35.0%
TGTTCTAATAGCCATGTGTT+GGG + chr1_2:77232579-77232598 Msa0094130:intron 35.0%
! GAGACCCTTTTTGTATTGTT+TGG - chr1_2:77232769-77232788 None:intergenic 35.0%
AAAAAGTTTCCAGATCATGG+AGG + chr1_2:77232810-77232829 Msa0094130:CDS 35.0%
AAGTTTCTATCAACCAGAAG+GGG - chr1_2:77233151-77233170 None:intergenic 35.0%
GGGTTTGACATTAAATTGCA+TGG + chr1_2:77233181-77233200 Msa0094130:CDS 35.0%
GATAAATGGTGCAAAATCGA+AGG - chr1_2:77233259-77233278 None:intergenic 35.0%
TGTCATTGCTTTCTCTACAA+TGG + chr1_2:77233547-77233566 Msa0094130:intron 35.0%
! GAAGAAGCATGTTTATGTTC+GGG - chr1_2:77233623-77233642 None:intergenic 35.0%
!! TGGTGTTGGTTAGTTTGATA+TGG + chr1_2:77233647-77233666 Msa0094130:intron 35.0%
GGAAATTGCAGTGTCATAAA+AGG - chr1_2:77233724-77233743 None:intergenic 35.0%
GAAGATTAGGGAAAAGATTG+GGG - chr1_2:77233924-77233943 None:intergenic 35.0%
GGAAGATTAGGGAAAAGATT+GGG - chr1_2:77233925-77233944 None:intergenic 35.0%
TGGAAGATTAGGGAAAAGAT+TGG - chr1_2:77233926-77233945 None:intergenic 35.0%
!! GCTTATGGATTGGAAGATTA+GGG - chr1_2:77233936-77233955 None:intergenic 35.0%
!! TGCTTATGGATTGGAAGATT+AGG - chr1_2:77233937-77233956 None:intergenic 35.0%
ATCTTCCAATCCATAAGCAA+TGG + chr1_2:77233938-77233957 Msa0094130:intron 35.0%
TCTTCCAATCCATAAGCAAT+GGG + chr1_2:77233939-77233958 Msa0094130:intron 35.0%
TTGTGCATTATGAAATGCGA+TGG - chr1_2:77234040-77234059 None:intergenic 35.0%
TACAGTGGACCTAAGATAAT+GGG + chr1_2:77234430-77234449 Msa0094130:intron 35.0%
CCTTCCTTTATATTGTAACG+GGG + chr1_2:77234497-77234516 Msa0094130:intron 35.0%
AAACTACAGTGGTCAAATTG+TGG + chr1_2:77234645-77234664 Msa0094130:intron 35.0%
AACTACAGTGGTCAAATTGT+GGG + chr1_2:77234646-77234665 Msa0094130:intron 35.0%
AATCTATCATGTCAGTACCT+TGG + chr1_2:77234773-77234792 Msa0094130:intron 35.0%
!! ATTGGTAGGTGTTACTGAAA+TGG + chr1_2:77234806-77234825 Msa0094130:intron 35.0%
! GAAATTCTGGAAGCATATGA+AGG + chr1_2:77234904-77234923 Msa0094130:CDS 35.0%
CAATAGTAGAAATTAGCCAG+AGG - chr1_2:77235003-77235022 None:intergenic 35.0%
AAAGGACTTATGCAATCAAC+AGG - chr1_2:77235029-77235048 None:intergenic 35.0%
! CTGTTACTTGTGCTTGTTTA+GGG + chr1_2:77235246-77235265 Msa0094130:intron 35.0%
TGCATAAATCATCTCTGTTC+AGG + chr1_2:77235316-77235335 Msa0094130:intron 35.0%
!! ATCTTTTGAAAGAGCTCTTG+AGG + chr1_2:77235361-77235380 Msa0094130:CDS 35.0%
GCTTGGATATAAAGAACAAG+AGG + chr1_2:77235511-77235530 Msa0094130:CDS 35.0%
GTTTCACTAATAGTCAAGCT+TGG + chr1_2:77235533-77235552 Msa0094130:CDS 35.0%
CCTATAATTGTCTGGATTCA+TGG - chr1_2:77235600-77235619 None:intergenic 35.0%
CCATGAATCCAGACAATTAT+AGG + chr1_2:77235597-77235616 Msa0094130:CDS 35.0%
TGCTTGTAGCTAATGCAAAA+AGG - chr1_2:77235702-77235721 None:intergenic 35.0%
!! CAAGCATAATAGCTTTAGCT+CGG + chr1_2:77235716-77235735 Msa0094130:intron 35.0%
GGCTTAACATTTGTTTCACT+TGG + chr1_2:77235741-77235760 Msa0094130:intron 35.0%
ACAATACATACTACCTGGAA+AGG - chr1_2:77235918-77235937 None:intergenic 35.0%
ATACCCTGTACAAAACACTT+GGG + chr1_2:77236084-77236103 Msa0094130:CDS 35.0%
AACCAAAAATGTGGGTAAAC+TGG + chr1_2:77236292-77236311 Msa0094130:intron 35.0%
ACCAAAAATGTGGGTAAACT+GGG + chr1_2:77236293-77236312 Msa0094130:intron 35.0%
! AAGCATAGCCAGTGTATTTT+TGG + chr1_2:77236331-77236350 Msa0094130:intron 35.0%
!!! ATAGCCAGTGTATTTTTGGA+GGG + chr1_2:77236335-77236354 Msa0094130:intron 35.0%
AGGTATGTACAAATCCTCTT+TGG + chr1_2:77236572-77236591 Msa0094130:intron 35.0%
GAAAGATCTGAGAATAGAGA+TGG - chr1_2:77236670-77236689 None:intergenic 35.0%
TCTTCTTTATACAATCACCC+TGG + chr1_2:77236688-77236707 Msa0094130:CDS 35.0%
CTTCTTTATACAATCACCCT+GGG + chr1_2:77236689-77236708 Msa0094130:CDS 35.0%
GTAATTAAACTAACCTTCCC+AGG - chr1_2:77236709-77236728 None:intergenic 35.0%
AGAACCCGCAAAATAAGAAA+CGG - chr1_2:77236804-77236823 None:intergenic 35.0%
!!! TTTTTTCCAGGCAGACATTT+TGG + chr1_2:77236827-77236846 Msa0094130:intron 35.0%
TTATGATTACCGTGTTCATG+TGG + chr1_2:77236962-77236981 Msa0094130:intron 35.0%
TATGATTACCGTGTTCATGT+GGG + chr1_2:77236963-77236982 Msa0094130:intron 35.0%
TATAACACATTATGCGGATG+TGG + chr1_2:77237285-77237304 Msa0094130:intron 35.0%
ATAACACATTATGCGGATGT+GGG + chr1_2:77237286-77237305 Msa0094130:intron 35.0%
AAATTGGACCTGAACCTAAT+GGG - chr1_2:77237444-77237463 None:intergenic 35.0%
AAATTGATGGAGCCATCTAA+TGG + chr1_2:77237515-77237534 Msa0094130:intron 35.0%
AAGAAAGAATGCACATCTAG+TGG + chr1_2:77237649-77237668 Msa0094130:intron 35.0%
AGAAAGAATGCACATCTAGT+GGG + chr1_2:77237650-77237669 Msa0094130:intron 35.0%
GGCTAAAAAATTATACGTGG+TGG + chr1_2:77237688-77237707 Msa0094130:intron 35.0%
! CAATCGGATAGAATTTTCCT+GGG - chr1_2:77237720-77237739 None:intergenic 35.0%
! CTTTGCTATAGTGTTGCAAT+CGG - chr1_2:77237736-77237755 None:intergenic 35.0%
AGTCCACAAAAAAGTTGAAG+GGG - chr1_2:77237858-77237877 None:intergenic 35.0%
TTTGTGGACTTTGTTCTTGT+TGG + chr1_2:77237868-77237887 Msa0094130:CDS 35.0%
! CTCAGGTTTGTGACTATTTT+TGG + chr1_2:77237891-77237910 Msa0094130:intron 35.0%
!!! CAGGTTTGTGACTATTTTTG+GGG + chr1_2:77237893-77237912 Msa0094130:intron 35.0%
!! CGCACTTTCTAAAATCAATG+AGG + chr1_2:77238017-77238036 Msa0094130:CDS 35.0%
GAGTATAGATCAATGACAGT+AGG - chr1_2:77238057-77238076 None:intergenic 35.0%
GCATTTCGTTTCAAAACCTT+TGG + chr1_2:77238287-77238306 Msa0094130:intron 35.0%
ATAGAAACAGTTTAGCCCAA+AGG - chr1_2:77238306-77238325 None:intergenic 35.0%
ATTACCAAGAAAAAGGAAGC+AGG + chr1_2:77238802-77238821 Msa0094130:intron 35.0%
!! TCTAGTTTGCTATACTGTCA+GGG - chr1_2:77238912-77238931 None:intergenic 35.0%
!! TTCTAGTTTGCTATACTGTC+AGG - chr1_2:77238913-77238932 None:intergenic 35.0%
CATGTCTTTGAATACAGAGT+CGG + chr1_2:77238952-77238971 Msa0094130:intron 35.0%
GTAAAATTCCCTTATTGTCC+AGG + chr1_2:77239191-77239210 Msa0094130:intron 35.0%
GCTGTCTCTCAAAAAATTCT+TGG + chr1_2:77239438-77239457 Msa0094130:CDS 35.0%
TCTCAAAAAATTCTTGGCAG+TGG + chr1_2:77239444-77239463 Msa0094130:CDS 35.0%
AATGACATTGCGTACATATG+TGG + chr1_2:77239528-77239547 Msa0094130:CDS 35.0%
TACAATTTGCAACTCAAGTG+TGG - chr1_2:77239729-77239748 None:intergenic 35.0%
AAACTTTCCCCCAATTGTTT+CGG + chr1_2:77239765-77239784 Msa0094130:intron 35.0%
! AACATGCCTTTTCACACTAA+AGG + chr1_2:77239857-77239876 Msa0094130:intron 35.0%
! ACTAGAAAGGTGTAGATTAC+AGG + chr1_2:77239944-77239963 Msa0094130:intron 35.0%
! CTAGAAAGGTGTAGATTACA+GGG + chr1_2:77239945-77239964 Msa0094130:intron 35.0%
AGATTTAGAGGTCAATGAGT+TGG - chr1_2:77240161-77240180 None:intergenic 35.0%
ACTTAGAGTCAGGTTAAAAG+AGG - chr1_2:77240226-77240245 None:intergenic 35.0%
ATGTGTATTCACTTAGAGTC+AGG - chr1_2:77240236-77240255 None:intergenic 35.0%
TTTAAACAGTTTCTCTGCCT+TGG + chr1_2:77240275-77240294 Msa0094130:intron 35.0%
! GGCTTAAAGCAACATCTTTT+TGG + chr1_2:77240368-77240387 Msa0094130:intron 35.0%
!!! TCTTTTTGGGACTTCCATAA+CGG + chr1_2:77240382-77240401 Msa0094130:intron 35.0%
! ATTTTATGTAACACCTGCAG+TGG - chr1_2:77240484-77240503 None:intergenic 35.0%
! AATTTCTTTTTCTGAGCAGG+AGG - chr1_2:77240563-77240582 None:intergenic 35.0%
AATGAAGAATCAAGTGCTAG+TGG + chr1_2:77240715-77240734 Msa0094130:CDS 35.0%
ATGAAGAATCAAGTGCTAGT+GGG + chr1_2:77240716-77240735 Msa0094130:CDS 35.0%
! TTTAAAACAGGTCTCCATGT+CGG - chr1_2:77240866-77240885 None:intergenic 35.0%
! GTTGATAGGTGAATTTACAG+AGG - chr1_2:77240913-77240932 None:intergenic 35.0%
!! TTTTGGGAGAATTGGTTGAT+AGG - chr1_2:77240927-77240946 None:intergenic 35.0%
!! TCCCAATATTTTGGGAGAAT+TGG - chr1_2:77240935-77240954 None:intergenic 35.0%
! GTCTAAAGAGCTTTTGCATA+AGG - chr1_2:77240995-77241014 None:intergenic 35.0%
TGATCTCTTTCCAATTAGGA+CGG + chr1_2:77241064-77241083 Msa0094130:intron 35.0%
!! AATCCAGCTTTGGAATAAGT+GGG - chr1_2:77241221-77241240 None:intergenic 35.0%
AAGCATTTCCCTGATAAAGT+TGG - chr1_2:77241427-77241446 None:intergenic 35.0%
! ATAGGTTGAAGATCCATTGT+TGG + chr1_2:77241560-77241579 Msa0094130:intron 35.0%
! TATTTTGTGGCTTCCAACAA+TGG - chr1_2:77241576-77241595 None:intergenic 35.0%
! CAGCAACTTCAAGTATTTTG+TGG - chr1_2:77241589-77241608 None:intergenic 35.0%
GAAGAATTCACCTGATTCAT+TGG + chr1_2:77241611-77241630 Msa0094130:CDS 35.0%
TGATGCTGAACAAAAAAGCT+AGG - chr1_2:77241722-77241741 None:intergenic 35.0%
AAATGGGACAAAAAAGAAGG+GGG - chr1_2:77242060-77242079 None:intergenic 35.0%
AAGATAATCCATTTCGTTGG+TGG - chr1_2:77242139-77242158 None:intergenic 35.0%
! AAAGTACCTGCAAACAAAAC+AGG - chr1_2:77242581-77242600 None:intergenic 35.0%
AAGAACATTACCTTGACACA+GGG - chr1_2:77242697-77242716 None:intergenic 35.0%
TAAGAACATTACCTTGACAC+AGG - chr1_2:77242698-77242717 None:intergenic 35.0%
! CTGTATATTGTGGATTGACA+TGG + chr1_2:77242815-77242834 Msa0094130:intron 35.0%
AGAAGAACCACAGATAAGTA+AGG - chr1_2:77242863-77242882 None:intergenic 35.0%
CACATTTCACTCATTGTTTG+GGG - chr1_2:77242908-77242927 None:intergenic 35.0%
! CATGTGCTATTCTATAACTC+TGG + chr1_2:77243168-77243187 Msa0094130:intron 35.0%
! TGTGCTATTCTATAACTCTG+GGG + chr1_2:77243170-77243189 Msa0094130:intron 35.0%
GAATCTTGTCATTCATGGAT+TGG + chr1_2:77243616-77243635 Msa0094130:intron 35.0%
CACTTAAAATTCTCCTTTGC+AGG - chr1_2:77243708-77243727 None:intergenic 35.0%
GCATTACAAGGTTAACATAC+AGG - chr1_2:77243782-77243801 None:intergenic 35.0%
ATGGCTAGAACTACCATTTA+CGG - chr1_2:77243969-77243988 None:intergenic 35.0%
ATATAACCTGCACCAAAACT+CGG - chr1_2:77244101-77244120 None:intergenic 35.0%
!! TAAATTTCTGGTCCTGCATA+CGG + chr1_2:77244328-77244347 Msa0094130:three_prime_UTR 35.0%
CAACATGTTCTCATGTATAC+TGG - chr1_2:77244357-77244376 None:intergenic 35.0%
GTTTGTAGATTCCTCTCCAT+TGG + chr1_2:77231546-77231565 Msa0094130:five_prime_UTR 40.0%
TAGCGAGAGAAACAGAGAAA+GGG - chr1_2:77231728-77231747 None:intergenic 40.0%
ATAGCGAGAGAAACAGAGAA+AGG - chr1_2:77231729-77231748 None:intergenic 40.0%
!! TTGAAGAGATTGGCCTCTTT+AGG - chr1_2:77231809-77231828 None:intergenic 40.0%
ATTGGATCTGACGAAGAGAA+AGG - chr1_2:77231850-77231869 None:intergenic 40.0%
AATGAGACATTGGACCTGTT+TGG - chr1_2:77232488-77232507 None:intergenic 40.0%
CACATGGCTATTAGAACACA+GGG - chr1_2:77232577-77232596 None:intergenic 40.0%
ACACATGGCTATTAGAACAC+AGG - chr1_2:77232578-77232597 None:intergenic 40.0%
GTGTTCTAATAGCCATGTGT+TGG + chr1_2:77232578-77232597 Msa0094130:intron 40.0%
TAATAGCCATGTGTTGGGTT+AGG + chr1_2:77232584-77232603 Msa0094130:intron 40.0%
!!! ATCATGGAGGTACGCTTTTT+TGG + chr1_2:77232823-77232842 Msa0094130:intron 40.0%
! GCTTTTACTTCGTGCATGTT+TGG + chr1_2:77232861-77232880 Msa0094130:intron 40.0%
! TTTAGCTTCGGTGAAAATCG+TGG + chr1_2:77232942-77232961 Msa0094130:intron 40.0%
AGACAGGTGCATGTTTGAAT+TGG - chr1_2:77232998-77233017 None:intergenic 40.0%
AGTTTCTATCAACCAGAAGG+GGG - chr1_2:77233150-77233169 None:intergenic 40.0%
ACCTTAAGAGTCATGTTTGC+TGG + chr1_2:77233340-77233359 Msa0094130:CDS 40.0%
! CATGTTTGCTGGCATGTTTA+TGG + chr1_2:77233351-77233370 Msa0094130:CDS 40.0%
TGATTGCTTCCCTGTATTCT+CGG - chr1_2:77233395-77233414 None:intergenic 40.0%
AGTGCTATCGAAATGCACTA+AGG + chr1_2:77233415-77233434 Msa0094130:CDS 40.0%
ACGTGATCTATCTCTCTTAC+AGG + chr1_2:77233464-77233483 Msa0094130:CDS 40.0%
TCTCTACAATGGAGTTACCT+TGG + chr1_2:77233558-77233577 Msa0094130:intron 40.0%
CTCTACAATGGAGTTACCTT+GGG + chr1_2:77233559-77233578 Msa0094130:intron 40.0%
ATGCTTCTTCATGTTGGTGT+TGG + chr1_2:77233633-77233652 Msa0094130:intron 40.0%
CTTCCAATCCATAAGCAATG+GGG + chr1_2:77233940-77233959 Msa0094130:intron 40.0%
GTATATGACCCCATTGCTTA+TGG - chr1_2:77233951-77233970 None:intergenic 40.0%
AGCAATGGGGTCATATACAA+TGG + chr1_2:77233953-77233972 Msa0094130:intron 40.0%
ATGGGGTCATATACAATGGA+AGG + chr1_2:77233957-77233976 Msa0094130:intron 40.0%
TGGGGTCATATACAATGGAA+GGG + chr1_2:77233958-77233977 Msa0094130:intron 40.0%
ATGCACAACCACAGACTTAA+TGG + chr1_2:77234052-77234071 Msa0094130:intron 40.0%
AGAGGAATCCATTAAGTCTG+TGG - chr1_2:77234063-77234082 None:intergenic 40.0%
GCTCAAATGCGAGATTTATC+TGG + chr1_2:77234135-77234154 Msa0094130:CDS 40.0%
!! TATCTGGCTTTGTTGAGACT+CGG + chr1_2:77234151-77234170 Msa0094130:CDS 40.0%
AGTCAAATCATCGCATGAAC+TGG + chr1_2:77234193-77234212 Msa0094130:CDS 40.0%
AATCATCGCATGAACTGGAT+TGG + chr1_2:77234198-77234217 Msa0094130:CDS 40.0%
CAGCTCAAGCAATCATCATT+AGG - chr1_2:77234290-77234309 None:intergenic 40.0%
AAACGATAGTCCTTAGCTAC+TGG - chr1_2:77234325-77234344 None:intergenic 40.0%
CTACAGTGGACCTAAGATAA+TGG + chr1_2:77234429-77234448 Msa0094130:intron 40.0%
ACAGTGGACCTAAGATAATG+GGG + chr1_2:77234431-77234450 Msa0094130:intron 40.0%
CTTCTCTACCCCATTATCTT+AGG - chr1_2:77234442-77234461 None:intergenic 40.0%
CCCCGTTACAATATAAAGGA+AGG - chr1_2:77234500-77234519 None:intergenic 40.0%
TGGACCCCGTTACAATATAA+AGG - chr1_2:77234504-77234523 None:intergenic 40.0%
ACTACAGTGGTCAAATTGTG+GGG + chr1_2:77234647-77234666 Msa0094130:intron 40.0%
AACACCTACCAATGTTACCA+AGG - chr1_2:77234799-77234818 None:intergenic 40.0%
TTCAATAGCTTTCGATGCAC+TGG - chr1_2:77234887-77234906 None:intergenic 40.0%
! TCAATCCGTTCATTTTCTGG+AGG - chr1_2:77234949-77234968 None:intergenic 40.0%
! TGCTCAATCCGTTCATTTTC+TGG - chr1_2:77234952-77234971 None:intergenic 40.0%
!! GAAAATGAACGGATTGAGCA+TGG + chr1_2:77234952-77234971 Msa0094130:CDS 40.0%
! GCTGTTACTTGTGCTTGTTT+AGG + chr1_2:77235245-77235264 Msa0094130:intron 40.0%
CTTGTGCTTGTTTAGGGATA+TGG + chr1_2:77235252-77235271 Msa0094130:intron 40.0%
TGTTCAGGTCTCTTTGTTAG+AGG + chr1_2:77235331-77235350 Msa0094130:intron 40.0%
GTCTCTTTGTTAGAGGAATG+TGG + chr1_2:77235338-77235357 Msa0094130:CDS 40.0%
!! CATAATAGCTTTAGCTCGGA+TGG + chr1_2:77235720-77235739 Msa0094130:intron 40.0%
!! TCTTTGATGATGCTGACCTA+TGG + chr1_2:77235805-77235824 Msa0094130:intron 40.0%
ATAACCCAACACATCGTTGA+AGG - chr1_2:77236019-77236038 None:intergenic 40.0%
GATACCCTGTACAAAACACT+TGG + chr1_2:77236083-77236102 Msa0094130:CDS 40.0%
TTATGCATGAAGATGAAGGC+AGG - chr1_2:77236195-77236214 None:intergenic 40.0%
! AAAATCCTTGCCTCCTTTTG+GGG - chr1_2:77236265-77236284 None:intergenic 40.0%
! CAAAATCCTTGCCTCCTTTT+GGG - chr1_2:77236266-77236285 None:intergenic 40.0%
! ACAAAATCCTTGCCTCCTTT+TGG - chr1_2:77236267-77236286 None:intergenic 40.0%
! TCCCAGTTTACCCACATTTT+TGG - chr1_2:77236297-77236316 None:intergenic 40.0%
AAAATGTGGGTAAACTGGGA+TGG + chr1_2:77236297-77236316 Msa0094130:intron 40.0%
! TACACTGGCTATGCTTATCA+AGG - chr1_2:77236327-77236346 None:intergenic 40.0%
!!! CATAGCCAGTGTATTTTTGG+AGG + chr1_2:77236334-77236353 Msa0094130:intron 40.0%
!!! TAGCCAGTGTATTTTTGGAG+GGG + chr1_2:77236336-77236355 Msa0094130:intron 40.0%
CTACAAAAACTTAGGTGAGG+CGG - chr1_2:77236446-77236465 None:intergenic 40.0%
TATTAGGCCTCTCCTAACTA+AGG + chr1_2:77236552-77236571 Msa0094130:CDS 40.0%
GTACATACCTTAGTTAGGAG+AGG - chr1_2:77236562-77236581 None:intergenic 40.0%
TTTATACAATCACCCTGGGA+AGG + chr1_2:77236693-77236712 Msa0094130:CDS 40.0%
TTTGTTCCAAAATGTCTGCC+TGG - chr1_2:77236836-77236855 None:intergenic 40.0%
GAGAATTCTATTAGGACGAC+CGG + chr1_2:77236870-77236889 Msa0094130:CDS 40.0%
TGTGTATATCTTACCTCCCA+GGG - chr1_2:77236902-77236921 None:intergenic 40.0%
TTGTGTATATCTTACCTCCC+AGG - chr1_2:77236903-77236922 None:intergenic 40.0%
ATAACTCTTGTGCTACACAC+AGG - chr1_2:77236946-77236965 None:intergenic 40.0%
CGATAATTCTTTCCTTCGGA+AGG + chr1_2:77237117-77237136 Msa0094130:intron 40.0%
GTCTCTCAGACCCATTTAAT+AGG + chr1_2:77237382-77237401 Msa0094130:intron 40.0%
!! TATTGGTTCCCATTAGGTTC+AGG + chr1_2:77237433-77237452 Msa0094130:intron 40.0%
GAAATTGGACCTGAACCTAA+TGG - chr1_2:77237445-77237464 None:intergenic 40.0%
TGGGTAGTAGGAACAGAAAT+TGG - chr1_2:77237460-77237479 None:intergenic 40.0%
CATAAGTATTACCATCCTGG+AGG - chr1_2:77237483-77237502 None:intergenic 40.0%
AGTGGGAGAATAAGCCAAAT+TGG + chr1_2:77237667-77237686 Msa0094130:intron 40.0%
! GCAATCGGATAGAATTTTCC+TGG - chr1_2:77237721-77237740 None:intergenic 40.0%
AACTATCTTGGAATACAGGG+TGG + chr1_2:77237823-77237842 Msa0094130:intron 40.0%
GTCCACAAAAAAGTTGAAGG+GGG - chr1_2:77237857-77237876 None:intergenic 40.0%
TATTGGTGCAGCATTATGAC+AGG + chr1_2:77237977-77237996 Msa0094130:intron 40.0%
CATTGATCTATACTCTGCCA+AGG + chr1_2:77238062-77238081 Msa0094130:CDS 40.0%
ATTCGCTTTCGGATTGTTTC+AGG + chr1_2:77238095-77238114 Msa0094130:intron 40.0%
AAATTCCCTTATTGTCCAGG+TGG + chr1_2:77239194-77239213 Msa0094130:intron 40.0%
CAAAACCACCTGGACAATAA+GGG - chr1_2:77239202-77239221 None:intergenic 40.0%
!!! TTTTTTCTGCCAAAACCACC+TGG - chr1_2:77239212-77239231 None:intergenic 40.0%
GTTCTGTCTTTGCAATGTTG+AGG + chr1_2:77239324-77239343 Msa0094130:intron 40.0%
TAAAGTTATGCCGTGCTTTG+TGG + chr1_2:77239681-77239700 Msa0094130:intron 40.0%
AAAGTTATGCCGTGCTTTGT+GGG + chr1_2:77239682-77239701 Msa0094130:intron 40.0%
TTCATGACCGAAACAATTGG+GGG - chr1_2:77239775-77239794 None:intergenic 40.0%
GTTCATGACCGAAACAATTG+GGG - chr1_2:77239776-77239795 None:intergenic 40.0%
GGTTCATGACCGAAACAATT+GGG - chr1_2:77239777-77239796 None:intergenic 40.0%
TGGTTCATGACCGAAACAAT+TGG - chr1_2:77239778-77239797 None:intergenic 40.0%
! GCTTAAGCTTTTGCGACAAT+TGG - chr1_2:77239798-77239817 None:intergenic 40.0%
CAAAGGCCTTTAGTGTGAAA+AGG - chr1_2:77239866-77239885 None:intergenic 40.0%
CTCTAGATCACTTGTCATAG+TGG + chr1_2:77239974-77239993 Msa0094130:intron 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG - chr1_2:77240220-77240239 None:intergenic 40.0%
! GGTATGCGCTCATAATTTTG+TGG + chr1_2:77240347-77240366 Msa0094130:intron 40.0%
ACTTCCATAACGGTCCAATT+TGG + chr1_2:77240392-77240411 Msa0094130:intron 40.0%
TACTCCAAATTGGACCGTTA+TGG - chr1_2:77240399-77240418 None:intergenic 40.0%
TATATAACGCTTTCCACTGC+AGG + chr1_2:77240468-77240487 Msa0094130:intron 40.0%
!! TGTTGCTGCAGAAGTATTCA+TGG + chr1_2:77240655-77240674 Msa0094130:intron 40.0%
TTCTCTTCTGCCTCCTAAAA+AGG - chr1_2:77240694-77240713 None:intergenic 40.0%
CTAGTGGGATATCAAAGTCT+GGG + chr1_2:77240731-77240750 Msa0094130:CDS 40.0%
GATCTCTTTCCAATTAGGAC+GGG + chr1_2:77241065-77241084 Msa0094130:intron 40.0%
ATCTCTTTCCAATTAGGACG+GGG + chr1_2:77241066-77241085 Msa0094130:intron 40.0%
TCATGGATCTTCACCTAACA+TGG - chr1_2:77241159-77241178 None:intergenic 40.0%
AATCCCACTTATTCCAAAGC+TGG + chr1_2:77241215-77241234 Msa0094130:intron 40.0%
!! GAATCCAGCTTTGGAATAAG+TGG - chr1_2:77241222-77241241 None:intergenic 40.0%
GTTGTTTGAGAATCCAGCTT+TGG - chr1_2:77241231-77241250 None:intergenic 40.0%
TGGTCTATTCAACAGGTAGT+AGG - chr1_2:77241304-77241323 None:intergenic 40.0%
! AAGCTGTTGGTCTATTCAAC+AGG - chr1_2:77241311-77241330 None:intergenic 40.0%
GATGAAACTGTGAAAGCTGT+TGG - chr1_2:77241324-77241343 None:intergenic 40.0%
AAGACCTAACATCAGTGTAG+TGG + chr1_2:77241376-77241395 Msa0094130:intron 40.0%
GAATCCACTACACTGATGTT+AGG - chr1_2:77241383-77241402 None:intergenic 40.0%
TGTCGAACACCAACTTTATC+AGG + chr1_2:77241415-77241434 Msa0094130:intron 40.0%
GTCGAACACCAACTTTATCA+GGG + chr1_2:77241416-77241435 Msa0094130:intron 40.0%
! TGTGCAATTTTTCCCTGCAT+AGG + chr1_2:77241542-77241561 Msa0094130:intron 40.0%
ATGGATCTTCAACCTATGCA+GGG - chr1_2:77241557-77241576 None:intergenic 40.0%
AATGGATCTTCAACCTATGC+AGG - chr1_2:77241558-77241577 None:intergenic 40.0%
AAGTGTGTCTCCAATGAATC+AGG - chr1_2:77241624-77241643 None:intergenic 40.0%
CCAAACAACGATGAGAATCA+GGG - chr1_2:77241990-77242009 None:intergenic 40.0%
ACCAAACAACGATGAGAATC+AGG - chr1_2:77241991-77242010 None:intergenic 40.0%
TTCTTTCTCCACCAACGAAA+TGG + chr1_2:77242128-77242147 Msa0094130:intron 40.0%
CATTCATGGATCCCACTTTA+TGG - chr1_2:77242209-77242228 None:intergenic 40.0%
AAGCTGAGCGTCAAACTATA+AGG + chr1_2:77242271-77242290 Msa0094130:CDS 40.0%
!! TTGATGCATAGAGCTGCTTT+TGG + chr1_2:77242599-77242618 Msa0094130:CDS 40.0%
CAACAAATAACCCTGTGTCA+AGG + chr1_2:77242684-77242703 Msa0094130:CDS 40.0%
!! CATGAGATGATTTGGTGTCT+TGG + chr1_2:77242955-77242974 Msa0094130:intron 40.0%
CTAAAAGGTTGAGGGAAACA+AGG + chr1_2:77243077-77243096 Msa0094130:intron 40.0%
AGTCTTTAAGTGTCCATTCC+CGG - chr1_2:77243362-77243381 None:intergenic 40.0%
ATGCAGCATCTTGATCATCA+AGG - chr1_2:77243416-77243435 None:intergenic 40.0%
TGCATTGAGTAAGTACCATC+TGG + chr1_2:77243431-77243450 Msa0094130:intron 40.0%
GAATGCATTTATCCCTGCAA+AGG + chr1_2:77243692-77243711 Msa0094130:intron 40.0%
GGTTCTTGTGATGCATTACA+AGG - chr1_2:77243794-77243813 None:intergenic 40.0%
TGCAAGCAAATTTCCATGGA+TGG - chr1_2:77243840-77243859 None:intergenic 40.0%
! ATCCATGGAAATTTGCTTGC+AGG + chr1_2:77243839-77243858 Msa0094130:intron 40.0%
ATCCTGCAAGCAAATTTCCA+TGG - chr1_2:77243844-77243863 None:intergenic 40.0%
! ATGGAAATTTGCTTGCAGGA+TGG + chr1_2:77243843-77243862 Msa0094130:intron 40.0%
TTGACTACCCTCAAAGTATG+TGG - chr1_2:77243900-77243919 None:intergenic 40.0%
ATATGCAAGACCACCGTAAA+TGG + chr1_2:77243953-77243972 Msa0094130:CDS 40.0%
ATATTGAAGAGCAGGGTCAA+TGG + chr1_2:77244261-77244280 Msa0094130:three_prime_UTR 40.0%
TGGATTTGCATCATCATCCT+AGG + chr1_2:77244281-77244300 Msa0094130:three_prime_UTR 40.0%
TAGATTCCTCTCCATTGGGT+TGG + chr1_2:77231551-77231570 Msa0094130:five_prime_UTR 45.0%
CTTTCTCAACTCCAACCCAA+TGG - chr1_2:77231565-77231584 None:intergenic 45.0%
ACTTAAGTAGGGTTGCACAC+TGG + chr1_2:77231588-77231607 Msa0094130:five_prime_UTR 45.0%
GAGAAACAGAGAAAGGGGTT+GGG - chr1_2:77231722-77231741 None:intergenic 45.0%
AGAGAAACAGAGAAAGGGGT+TGG - chr1_2:77231723-77231742 None:intergenic 45.0%
AGCGAGAGAAACAGAGAAAG+GGG - chr1_2:77231727-77231746 None:intergenic 45.0%
TGCTTCTCTTCCTCCTAAAG+AGG + chr1_2:77231793-77231812 Msa0094130:CDS 45.0%
!! AAGAGATTGGCCTCTTTAGG+AGG - chr1_2:77231806-77231825 None:intergenic 45.0%
TCTCTCTCTCTCTTTCTCTC+TGG + chr1_2:77232013-77232032 Msa0094130:intron 45.0%
CTCTCTCTCTCTTTCTCTCT+GGG + chr1_2:77232014-77232033 Msa0094130:intron 45.0%
GACATTGGACCTGTTTGGAT+TGG - chr1_2:77232483-77232502 None:intergenic 45.0%
TTAGAACACAGGGATAACCC+CGG - chr1_2:77232567-77232586 None:intergenic 45.0%
! CCATGTGTTGGGTTAGGTTT+CGG + chr1_2:77232590-77232609 Msa0094130:intron 45.0%
! TAGGTTTCGGTTTTCCCCAT+AGG + chr1_2:77232603-77232622 Msa0094130:intron 45.0%
! AAAAGCGTACCTCCATGATC+TGG - chr1_2:77232822-77232841 None:intergenic 45.0%
GTTTGAATTGGCGGTGAGTT+TGG - chr1_2:77232986-77233005 None:intergenic 45.0%
CAGGTGCATGTTTGAATTGG+CGG - chr1_2:77232995-77233014 None:intergenic 45.0%
! TATGTTTCTGTTCCCCCTTC+TGG + chr1_2:77233135-77233154 Msa0094130:intron 45.0%
GGCAACATACCTTCAATCCT+TGG - chr1_2:77233238-77233257 None:intergenic 45.0%
GCCAGCAAACATGACTCTTA+AGG - chr1_2:77233344-77233363 None:intergenic 45.0%
TGAAAGAAAACACGCACCCA+AGG - chr1_2:77233578-77233597 None:intergenic 45.0%
ATGTCTCTTGGTGAAGTTCG+TGG + chr1_2:77233759-77233778 Msa0094130:intron 45.0%
TGTCTCTTGGTGAAGTTCGT+GGG + chr1_2:77233760-77233779 Msa0094130:intron 45.0%
TGACCCCATTGCTTATGGAT+TGG - chr1_2:77233946-77233965 None:intergenic 45.0%
!! TACCTTGGCCTTGGTAACAT+TGG + chr1_2:77234788-77234807 Msa0094130:intron 45.0%
TACCAATGTTACCAAGGCCA+AGG - chr1_2:77234793-77234812 None:intergenic 45.0%
!! TTGGCCTTGGTAACATTGGT+AGG + chr1_2:77234792-77234811 Msa0094130:intron 45.0%
TCTTGAGGAGTTGCAGAAGA+AGG + chr1_2:77235376-77235395 Msa0094130:CDS 45.0%
AAGCTTGGTCGCTTAGAAGA+AGG + chr1_2:77235548-77235567 Msa0094130:CDS 45.0%
AGAAGGCGAGAAATTGTACC+AGG + chr1_2:77235565-77235584 Msa0094130:CDS 45.0%
GATTCATGGAAAGCAATGCC+TGG - chr1_2:77235586-77235605 None:intergenic 45.0%
CTTGTGTCTCTTGCATCCAT+AGG - chr1_2:77235824-77235843 None:intergenic 45.0%
AAGGCCTTCAACGATGTGTT+GGG + chr1_2:77236012-77236031 Msa0094130:CDS 45.0%
! CTGCCCAAGTGTTTTGTACA+GGG - chr1_2:77236090-77236109 None:intergenic 45.0%
CACTTGGGCAGCAATTTAAG+CGG + chr1_2:77236099-77236118 Msa0094130:CDS 45.0%
TAAGCGGTCATCTGCTGTTA+AGG + chr1_2:77236115-77236134 Msa0094130:CDS 45.0%
! AAATCCTTGCCTCCTTTTGG+GGG - chr1_2:77236264-77236283 None:intergenic 45.0%
!!! AGCCAGTGTATTTTTGGAGG+GGG + chr1_2:77236337-77236356 Msa0094130:intron 45.0%
!!! AGTGTATTTTTGGAGGGGGA+GGG + chr1_2:77236341-77236360 Msa0094130:intron 45.0%
AGAGATGGAACTCCCTAGAA+AGG - chr1_2:77236655-77236674 None:intergenic 45.0%
!!! GCGGGTTCTGATTTTTTTCC+AGG + chr1_2:77236815-77236834 Msa0094130:intron 45.0%
AACTCGTCTAATCCTTCCGA+AGG - chr1_2:77237132-77237151 None:intergenic 45.0%
GATATTGGTGCAGGTAGCAT+GGG - chr1_2:77237331-77237350 None:intergenic 45.0%
TGATATTGGTGCAGGTAGCA+TGG - chr1_2:77237332-77237351 None:intergenic 45.0%
TGTGGGTAATTCCTCACTGT+AGG + chr1_2:77237360-77237379 Msa0094130:intron 45.0%
AGTATTACCATCCTGGAGGT+GGG - chr1_2:77237479-77237498 None:intergenic 45.0%
AAGTATTACCATCCTGGAGG+TGG - chr1_2:77237480-77237499 None:intergenic 45.0%
!!! AGCCCCCTTCAACTTTTTTG+TGG + chr1_2:77237852-77237871 Msa0094130:CDS 45.0%
!! GACTTTGTTCTTGTTGGCTC+AGG + chr1_2:77237874-77237893 Msa0094130:CDS 45.0%
ACTCCAATGCCATGCAATGA+AGG + chr1_2:77238417-77238436 Msa0094130:intron 45.0%
! CCAACCTGCTTCCTTTTTCT+TGG - chr1_2:77238809-77238828 None:intergenic 45.0%
CCAAGAAAAAGGAAGCAGGT+TGG + chr1_2:77238806-77238825 Msa0094130:intron 45.0%
ACTGAAGCATGCTGGTGATT+TGG + chr1_2:77238977-77238996 Msa0094130:CDS 45.0%
CTGCATTTGCAGATGAAGCT+AGG + chr1_2:77239009-77239028 Msa0094130:CDS 45.0%
TGCAGATGAAGCTAGGTGTA+TGG + chr1_2:77239016-77239035 Msa0094130:CDS 45.0%
GAAGCTAGGTGTATGGATCT+CGG + chr1_2:77239023-77239042 Msa0094130:CDS 45.0%
CCAAAACCACCTGGACAATA+AGG - chr1_2:77239203-77239222 None:intergenic 45.0%
! CCTTATTGTCCAGGTGGTTT+TGG + chr1_2:77239200-77239219 Msa0094130:intron 45.0%
! GCCGTGCTATTCACAAAAGA+CGG + chr1_2:77239234-77239253 Msa0094130:CDS 45.0%
! CCCGTCTTTTGTGAATAGCA+CGG - chr1_2:77239238-77239257 None:intergenic 45.0%
! CCGTGCTATTCACAAAAGAC+GGG + chr1_2:77239235-77239254 Msa0094130:CDS 45.0%
! CGTGCTATTCACAAAAGACG+GGG + chr1_2:77239236-77239255 Msa0094130:CDS 45.0%
! TATTTTCGCAAAGCAGCTGC+TGG + chr1_2:77239589-77239608 Msa0094130:CDS 45.0%
TGCATGTAACCCACAAAGCA+CGG - chr1_2:77239694-77239713 None:intergenic 45.0%
! CTTGGTTGTTGGTTGTTGGT+TGG - chr1_2:77240063-77240082 None:intergenic 45.0%
! AAGGCTTGGTTGTTGGTTGT+TGG - chr1_2:77240067-77240086 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr1_2:77240079-77240098 Msa0094130:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr1_2:77240080-77240099 Msa0094130:intron 45.0%
GCTAGTGGGATATCAAAGTC+TGG + chr1_2:77240730-77240749 Msa0094130:CDS 45.0%
AACCTGTTGATCCAGATCCT+CGG + chr1_2:77240767-77240786 Msa0094130:CDS 45.0%
TTTGCATTCCATGTCCGACA+TGG + chr1_2:77240849-77240868 Msa0094130:intron 45.0%
TCTCTTTCCAATTAGGACGG+GGG + chr1_2:77241067-77241086 Msa0094130:intron 45.0%
ACGGGGGACAAGAATGATAA+CGG + chr1_2:77241083-77241102 Msa0094130:intron 45.0%
!! GGACAAGAATGATAACGGCT+TGG + chr1_2:77241088-77241107 Msa0094130:intron 45.0%
!! GAATGATAACGGCTTGGTCA+TGG + chr1_2:77241094-77241113 Msa0094130:intron 45.0%
TTTGGGGAGAGAGCTTAACA+TGG - chr1_2:77241131-77241150 None:intergenic 45.0%
!!! ACCTAACATGGTGGGTTTTG+GGG - chr1_2:77241147-77241166 None:intergenic 45.0%
!!! CACCTAACATGGTGGGTTTT+GGG - chr1_2:77241148-77241167 None:intergenic 45.0%
!!! TCACCTAACATGGTGGGTTT+TGG - chr1_2:77241149-77241168 None:intergenic 45.0%
GGATCTTCACCTAACATGGT+GGG - chr1_2:77241155-77241174 None:intergenic 45.0%
TGGATCTTCACCTAACATGG+TGG - chr1_2:77241156-77241175 None:intergenic 45.0%
!!! GAAGATTTTGCTAGCCTTCC+AGG + chr1_2:77241674-77241693 Msa0094130:CDS 45.0%
CCCTGATTCTCATCGTTGTT+TGG + chr1_2:77241987-77242006 Msa0094130:CDS 45.0%
AAAGAAGGGGGTGAAGGAAA+GGG - chr1_2:77242048-77242067 None:intergenic 45.0%
AAAAGAAGGGGGTGAAGGAA+AGG - chr1_2:77242049-77242068 None:intergenic 45.0%
GACAAAAAAGAAGGGGGTGA+AGG - chr1_2:77242054-77242073 None:intergenic 45.0%
AGTTTCTCACTGTCAGTCAC+AGG - chr1_2:77242234-77242253 None:intergenic 45.0%
CTGACAGTGAGAAACTCGTT+TGG + chr1_2:77242238-77242257 Msa0094130:CDS 45.0%
AGATCCCAATAGAAGAGCTG+AGG + chr1_2:77242640-77242659 Msa0094130:CDS 45.0%
ACAGCCTCAGCTCTTCTATT+GGG - chr1_2:77242647-77242666 None:intergenic 45.0%
!! GAGGCTGTCAAGTTGATTGA+AGG + chr1_2:77242659-77242678 Msa0094130:CDS 45.0%
TCCCTACTGCTAAAAGGTTG+AGG + chr1_2:77243068-77243087 Msa0094130:intron 45.0%
! CCCTCAACCTTTTAGCAGTA+GGG - chr1_2:77243072-77243091 None:intergenic 45.0%
CCCTACTGCTAAAAGGTTGA+GGG + chr1_2:77243069-77243088 Msa0094130:intron 45.0%
! TCCCTCAACCTTTTAGCAGT+AGG - chr1_2:77243073-77243092 None:intergenic 45.0%
TTAAGTGTCCATTCCCGGAT+TGG - chr1_2:77243357-77243376 None:intergenic 45.0%
ACAAGGTTAACATACAGGGC+AGG - chr1_2:77243777-77243796 None:intergenic 45.0%
CCTCAAAGTATGTGGAGTAC+GGG - chr1_2:77243892-77243911 None:intergenic 45.0%
CCCTCAAAGTATGTGGAGTA+CGG - chr1_2:77243893-77243912 None:intergenic 45.0%
CCGTACTCCACATACTTTGA+GGG + chr1_2:77243890-77243909 Msa0094130:CDS 45.0%
GCTAGAACTACCATTTACGG+TGG - chr1_2:77243966-77243985 None:intergenic 45.0%
!! TGGTAGTTCTAGCCATTCAC+CGG + chr1_2:77243973-77243992 Msa0094130:CDS 45.0%
GATTCCACAACGTTATCACC+CGG - chr1_2:77243995-77244014 None:intergenic 45.0%
GTGGAATCTGCCACATCAAA+CGG + chr1_2:77244007-77244026 Msa0094130:CDS 45.0%
! TGCTAGTTTGCCGTTTGATG+TGG - chr1_2:77244020-77244039 None:intergenic 45.0%
!! TTTGATCGGCTCTTTTCTCG+AGG + chr1_2:77244237-77244256 Msa0094130:three_prime_UTR 45.0%
!! TTGATCGGCTCTTTTCTCGA+GGG + chr1_2:77244238-77244257 Msa0094130:three_prime_UTR 45.0%
TCGAGGGATATTGAAGAGCA+GGG + chr1_2:77244254-77244273 Msa0094130:three_prime_UTR 45.0%
CATCATCATCCTAGGTAGCA+GGG + chr1_2:77244289-77244308 Msa0094130:three_prime_UTR 45.0%
CCATGCTAGAACTCAACCAA+CGG - chr1_2:77244471-77244490 None:intergenic 45.0%
!!! ATATTTTTTTTTATTGAAAT+TGG + chr1_2:77232142-77232161 Msa0094130:intron 5.0%
!!! AATCTTTAAAAATTTTATTT+TGG + chr1_2:77234830-77234849 Msa0094130:intron 5.0%
!! GAATTAAAAAAAAAAAAAAA+GGG - chr1_2:77238646-77238665 None:intergenic 5.0%
!! AGAATTAAAAAAAAAAAAAA+AGG - chr1_2:77238647-77238666 None:intergenic 5.0%
!! TTATATAATAAATTTAATCA+TGG - chr1_2:77241176-77241195 None:intergenic 5.0%
TCAACTCCAACCCAATGGAG+AGG - chr1_2:77231560-77231579 None:intergenic 50.0%
TCGTCGTATCGGAGTGAGTT+GGG - chr1_2:77231760-77231779 None:intergenic 50.0%
CATTGTCGTCGTCGTCGTAT+CGG - chr1_2:77231771-77231790 None:intergenic 50.0%
GATACGACGACGACGACAAT+GGG + chr1_2:77231770-77231789 Msa0094130:exon 50.0%
CTAAACAGGCCCATAGAAGC+AGG - chr1_2:77232235-77232254 None:intergenic 50.0%
CCGAAACCTAACCCAACACA+TGG - chr1_2:77232593-77232612 None:intergenic 50.0%
AGCTTCGGTGAAAATCGTGG+TGG + chr1_2:77232945-77232964 Msa0094130:intron 50.0%
!! GCATATGAACTGGTTCGCCA+AGG + chr1_2:77233218-77233237 Msa0094130:CDS 50.0%
!! ACTGGTTCGCCAAGGATTGA+AGG + chr1_2:77233226-77233245 Msa0094130:CDS 50.0%
TGCTTCCCTGTATTCTCGGT+CGG - chr1_2:77233391-77233410 None:intergenic 50.0%
AAGGGTTCCCTCATCACGTA+TGG + chr1_2:77233976-77233995 Msa0094130:intron 50.0%
AGGGTTCCCTCATCACGTAT+GGG + chr1_2:77233977-77233996 Msa0094130:intron 50.0%
CAGACTCCCATACGTGATGA+GGG - chr1_2:77233986-77234005 None:intergenic 50.0%
ACAGACTCCCATACGTGATG+AGG - chr1_2:77233987-77234006 None:intergenic 50.0%
CGCATTTGAGCCTGTCAATG+AGG - chr1_2:77234126-77234145 None:intergenic 50.0%
TCATGTCAGTACCTTGGCCT+TGG + chr1_2:77234779-77234798 Msa0094130:intron 50.0%
GAAGGCCTTCAACGATGTGT+TGG + chr1_2:77236011-77236030 Msa0094130:CDS 50.0%
! GCTGCCCAAGTGTTTTGTAC+AGG - chr1_2:77236091-77236110 None:intergenic 50.0%
GGGGGGTTGCATGGATAATA+TGG - chr1_2:77236240-77236259 None:intergenic 50.0%
CTCCCCCTCCAAAAATACAC+TGG - chr1_2:77236342-77236361 None:intergenic 50.0%
!!! CAGTGTATTTTTGGAGGGGG+AGG + chr1_2:77236340-77236359 Msa0094130:intron 50.0%
!!! GTGTATTTTTGGAGGGGGAG+GGG + chr1_2:77236342-77236361 Msa0094130:intron 50.0%
!!! TGTATTTTTGGAGGGGGAGG+GGG + chr1_2:77236343-77236362 Msa0094130:intron 50.0%
!! TTACCTCCCAGGGTATTGAC+CGG - chr1_2:77236892-77236911 None:intergenic 50.0%
TACCGTGTTCATGTGGGACA+AGG + chr1_2:77236969-77236988 Msa0094130:intron 50.0%
ACCGTGTTCATGTGGGACAA+GGG + chr1_2:77236970-77236989 Msa0094130:intron 50.0%
TCCCTTGTCCCACATGAACA+CGG - chr1_2:77236974-77236993 None:intergenic 50.0%
ATGTGGGACAAGGGAAAGCT+TGG + chr1_2:77236979-77236998 Msa0094130:intron 50.0%
! TATGCGGATGTGGGTTGAGT+TGG + chr1_2:77237295-77237314 Msa0094130:intron 50.0%
GCACCTTCATTGCATGGCAT+TGG - chr1_2:77238423-77238442 None:intergenic 50.0%
CTCTTGGCACCTTCATTGCA+TGG - chr1_2:77238429-77238448 None:intergenic 50.0%
AGTCGGATACTGAAGCATGC+TGG + chr1_2:77238969-77238988 Msa0094130:CDS 50.0%
ACATGCACTGCATGTCATGG+AGG - chr1_2:77239275-77239294 None:intergenic 50.0%
TCCATGACATGCAGTGCATG+TGG + chr1_2:77239274-77239293 Msa0094130:CDS 50.0%
ACCACATGCACTGCATGTCA+TGG - chr1_2:77239278-77239297 None:intergenic 50.0%
CTGAAAGCTACTTCCGCCAA+GGG + chr1_2:77239407-77239426 Msa0094130:CDS 50.0%
TGAAAGCTACTTCCGCCAAG+GGG + chr1_2:77239408-77239427 Msa0094130:CDS 50.0%
! GTGGGATAAGGCTTGGTTGT+TGG - chr1_2:77240074-77240093 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr1_2:77240081-77240100 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr1_2:77240078-77240097 Msa0094130:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr1_2:77240084-77240103 Msa0094130:intron 50.0%
TCCTCCAAAGTCAACAGCTG+AGG + chr1_2:77240514-77240533 Msa0094130:CDS 50.0%
!! TCCTCAGCTGTTGACTTTGG+AGG - chr1_2:77240518-77240537 None:intergenic 50.0%
TCCAAAGTCAACAGCTGAGG+AGG + chr1_2:77240517-77240536 Msa0094130:CDS 50.0%
!! TCCTCCTCAGCTGTTGACTT+TGG - chr1_2:77240521-77240540 None:intergenic 50.0%
TTTCTGAGCAGGAGGCAACT+TGG - chr1_2:77240555-77240574 None:intergenic 50.0%
ACCTGTTGATCCAGATCCTC+GGG + chr1_2:77240768-77240787 Msa0094130:CDS 50.0%
! TGTAACAACTTTTCCCCCCG+AGG - chr1_2:77240787-77240806 None:intergenic 50.0%
TCGGGGGGAAAAGTTGTTAC+AGG + chr1_2:77240786-77240805 Msa0094130:CDS 50.0%
TTCTTGTCCCCCGTCCTAAT+TGG - chr1_2:77241077-77241096 None:intergenic 50.0%
TCCCCAAAACCCACCATGTT+AGG + chr1_2:77241143-77241162 Msa0094130:intron 50.0%
!! GTCAGTCACAGGAGCATTCA+TGG - chr1_2:77242223-77242242 None:intergenic 50.0%
TCTGTAAGCAGTCAGCTGCA+CGG + chr1_2:77242428-77242447 Msa0094130:intron 50.0%
GCACGGGAAATCTCTTCTTG+AGG + chr1_2:77242445-77242464 Msa0094130:CDS 50.0%
GACAGCCTCAGCTCTTCTAT+TGG - chr1_2:77242648-77242667 None:intergenic 50.0%
TCTAAAAGCAATGGCGCGCT+TGG + chr1_2:77243330-77243349 Msa0094130:intron 50.0%
CCCGTACTCCACATACTTTG+AGG + chr1_2:77243889-77243908 Msa0094130:CDS 50.0%
!! GGTAGTTCTAGCCATTCACC+GGG + chr1_2:77243974-77243993 Msa0094130:CDS 50.0%
CAACGTTATCACCCGGTGAA+TGG - chr1_2:77243988-77244007 None:intergenic 50.0%
! TTCACCGGGTGATAACGTTG+TGG + chr1_2:77243988-77244007 Msa0094130:CDS 50.0%
AAGTTCCCACTTCCCAGCAA+GGG + chr1_2:77244072-77244091 Msa0094130:three_prime_UTR 50.0%
! AAAACTCGGTGACCCTTGCT+GGG - chr1_2:77244087-77244106 None:intergenic 50.0%
CTCGAGGGATATTGAAGAGC+AGG + chr1_2:77244253-77244272 Msa0094130:three_prime_UTR 50.0%
GCATCATCATCCTAGGTAGC+AGG + chr1_2:77244288-77244307 Msa0094130:three_prime_UTR 50.0%
!! ATTTCTGGTCCTGCATACGG+CGG + chr1_2:77244331-77244350 Msa0094130:three_prime_UTR 50.0%
! CCGTTGGTTGAGTTCTAGCA+TGG + chr1_2:77244468-77244487 Msa0094130:three_prime_UTR 50.0%
! TCGTATCGGAGTGAGTTGGG+AGG - chr1_2:77231757-77231776 None:intergenic 55.0%
GTCGTCGTATCGGAGTGAGT+TGG - chr1_2:77231761-77231780 None:intergenic 55.0%
CGATACGACGACGACGACAA+TGG + chr1_2:77231769-77231788 Msa0094130:exon 55.0%
!! CGTGCATGTTTGGTGTCTCG+AGG + chr1_2:77232871-77232890 Msa0094130:intron 55.0%
ATCGGTCCGACCGAGAATAC+AGG + chr1_2:77233382-77233401 Msa0094130:CDS 55.0%
TCGGTCCGACCGAGAATACA+GGG + chr1_2:77233383-77233402 Msa0094130:CDS 55.0%
!!! GTATTTTTGGAGGGGGAGGG+GGG + chr1_2:77236344-77236363 Msa0094130:intron 55.0%
!!! TATTTTTGGAGGGGGAGGGG+GGG + chr1_2:77236345-77236364 Msa0094130:intron 55.0%
GGTCTGAGAGACCTACAGTG+AGG - chr1_2:77237374-77237393 None:intergenic 55.0%
TGTTCCTACTACCCACCTCC+AGG + chr1_2:77237465-77237484 Msa0094130:intron 55.0%
! ATACGTGGTGGAAAGGTCCC+AGG + chr1_2:77237700-77237719 Msa0094130:intron 55.0%
GTGCAGCATTATGACAGGCG+CGG + chr1_2:77237982-77238001 Msa0094130:intron 55.0%
CTGTGTGAAACGCATGCTGC+AGG + chr1_2:77239067-77239086 Msa0094130:CDS 55.0%
GCGGAAGTAGCTTTCAGCAG+AGG - chr1_2:77239404-77239423 None:intergenic 55.0%
GCTGAAAGCTACTTCCGCCA+AGG + chr1_2:77239406-77239425 Msa0094130:CDS 55.0%
TACTTCCGCCAAGGGGATCT+TGG + chr1_2:77239415-77239434 Msa0094130:CDS 55.0%
ACTTCCGCCAAGGGGATCTT+GGG + chr1_2:77239416-77239435 Msa0094130:CDS 55.0%
AAGCAGCTGCTGGAGCTATC+AGG + chr1_2:77239599-77239618 Msa0094130:CDS 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr1_2:77240086-77240105 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr1_2:77240092-77240111 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr1_2:77240093-77240112 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr1_2:77240092-77240111 Msa0094130:intron 55.0%
CCTGTTGATCCAGATCCTCG+GGG + chr1_2:77240769-77240788 Msa0094130:CDS 55.0%
CTGTTGATCCAGATCCTCGG+GGG + chr1_2:77240770-77240789 Msa0094130:CDS 55.0%
TGTTGATCCAGATCCTCGGG+GGG + chr1_2:77240771-77240790 Msa0094130:CDS 55.0%
! AACTTTTCCCCCCGAGGATC+TGG - chr1_2:77240781-77240800 None:intergenic 55.0%
ACAGGTCTCCATGTCGGACA+TGG - chr1_2:77240860-77240879 None:intergenic 55.0%
CTGTAAGCAGTCAGCTGCAC+GGG + chr1_2:77242429-77242448 Msa0094130:intron 55.0%
ATTGAGAGCAGAGTTGGGCG+AGG - chr1_2:77243930-77243949 None:intergenic 55.0%
GAAGTTCCCACTTCCCAGCA+AGG + chr1_2:77244071-77244090 Msa0094130:three_prime_UTR 55.0%
! CAAAACTCGGTGACCCTTGC+TGG - chr1_2:77244088-77244107 None:intergenic 55.0%
! CAGCAAGGGTCACCGAGTTT+TGG + chr1_2:77244086-77244105 Msa0094130:three_prime_UTR 55.0%
AGTAGCTCTCCCTGCTACCT+AGG - chr1_2:77244301-77244320 None:intergenic 55.0%
!! TTGCCTCCTTTTGGGGGAGG+GGG - chr1_2:77236258-77236277 None:intergenic 60.0%
!! CTTGCCTCCTTTTGGGGGAG+GGG - chr1_2:77236259-77236278 None:intergenic 60.0%
!! CCTTGCCTCCTTTTGGGGGA+GGG - chr1_2:77236260-77236279 None:intergenic 60.0%
!! TCCTTGCCTCCTTTTGGGGG+AGG - chr1_2:77236261-77236280 None:intergenic 60.0%
!! ATTTTTGGAGGGGGAGGGGG+GGG + chr1_2:77236346-77236365 Msa0094130:intron 60.0%
AGGACGACCGGTCAATACCC+TGG + chr1_2:77236882-77236901 Msa0094130:CDS 60.0%
GGACGACCGGTCAATACCCT+GGG + chr1_2:77236883-77236902 Msa0094130:CDS 60.0%
CCATCCTGGAGGTGGGTAGT+AGG - chr1_2:77237472-77237491 None:intergenic 60.0%
CCTACTACCCACCTCCAGGA+TGG + chr1_2:77237469-77237488 Msa0094130:intron 60.0%
ACGCATGCTGCAGGCTGATC+AGG + chr1_2:77239076-77239095 Msa0094130:CDS 60.0%
ACAGCCCAAGATCCCCTTGG+CGG - chr1_2:77239423-77239442 None:intergenic 60.0%
GAGACAGCCCAAGATCCCCT+TGG - chr1_2:77239426-77239445 None:intergenic 60.0%
CCCCGAGGATCTGGATCAAC+AGG - chr1_2:77240772-77240791 None:intergenic 60.0%
GAAGGGGGTGAAGGAAAGGG+TGG - chr1_2:77242045-77242064 None:intergenic 60.0%
ATGGCGCGCTTGGACCAATC+CGG + chr1_2:77243340-77243359 Msa0094130:CDS 60.0%
CGCTTGGACCAATCCGGGAA+TGG + chr1_2:77243346-77243365 Msa0094130:CDS 60.0%
GGTGACCCTTGCTGGGAAGT+GGG - chr1_2:77244080-77244099 None:intergenic 60.0%
!! GGGTCACCGAGTTTTGGTGC+AGG + chr1_2:77244092-77244111 Msa0094130:three_prime_UTR 60.0%
GTATACTGGCCGCCGTATGC+AGG - chr1_2:77244343-77244362 None:intergenic 60.0%
TTTGGGGGAGGGGGGTTGCA+TGG - chr1_2:77236249-77236268 None:intergenic 65.0%
TGCAACCCCCCTCCCCCAAA+AGG + chr1_2:77236249-77236268 Msa0094130:intron 65.0%
AACCCCCCTCCCCCAAAAGG+AGG + chr1_2:77236252-77236271 Msa0094130:intron 65.0%
!! TGCCTCCTTTTGGGGGAGGG+GGG - chr1_2:77236257-77236276 None:intergenic 65.0%
CCCTCCCCCAAAAGGAGGCA+AGG + chr1_2:77236257-77236276 Msa0094130:intron 65.0%
!! TTTTTGGAGGGGGAGGGGGG+GGG + chr1_2:77236347-77236366 Msa0094130:intron 65.0%
CGACCGGTCAATACCCTGGG+AGG + chr1_2:77236886-77236905 Msa0094130:CDS 65.0%
TGGCGCGCTTGGACCAATCC+GGG + chr1_2:77243341-77243360 Msa0094130:CDS 65.0%
CGGTGACCCTTGCTGGGAAG+TGG - chr1_2:77244081-77244100 None:intergenic 65.0%
!! TTTTGGAGGGGGAGGGGGGG+GGG + chr1_2:77236348-77236367 Msa0094130:intron 70.0%
TTTGGAGGGGGAGGGGGGGG+GGG + chr1_2:77236349-77236368 Msa0094130:intron 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 77231526 77244551 77231526 ID=Msa0094130;Name=Msa0094130
chr1_2 mRNA 77231526 77244551 77231526 ID=Msa0094130-mRNA-1;Parent=Msa0094130;Name=Msa0094130-mRNA-1;_AED=0.09;_eAED=0.09;_QI=262|1|1|1|1|1|26|488|901
chr1_2 exon 77231526 77231838 77231526 ID=Msa0094130-mRNA-1:exon:27327;Parent=Msa0094130-mRNA-1
chr1_2 exon 77232753 77232831 77232753 ID=Msa0094130-mRNA-1:exon:27328;Parent=Msa0094130-mRNA-1
chr1_2 exon 77233165 77233247 77233165 ID=Msa0094130-mRNA-1:exon:27329;Parent=Msa0094130-mRNA-1
chr1_2 exon 77233336 77233485 77233336 ID=Msa0094130-mRNA-1:exon:27330;Parent=Msa0094130-mRNA-1
chr1_2 exon 77234135 77234250 77234135 ID=Msa0094130-mRNA-1:exon:27331;Parent=Msa0094130-mRNA-1
chr1_2 exon 77234888 77234993 77234888 ID=Msa0094130-mRNA-1:exon:27332;Parent=Msa0094130-mRNA-1
chr1_2 exon 77235338 77235409 77235338 ID=Msa0094130-mRNA-1:exon:27333;Parent=Msa0094130-mRNA-1
chr1_2 exon 77235503 77235618 77235503 ID=Msa0094130-mRNA-1:exon:27334;Parent=Msa0094130-mRNA-1
chr1_2 exon 77236004 77236136 77236004 ID=Msa0094130-mRNA-1:exon:27335;Parent=Msa0094130-mRNA-1
chr1_2 exon 77236496 77236573 77236496 ID=Msa0094130-mRNA-1:exon:27336;Parent=Msa0094130-mRNA-1
chr1_2 exon 77236661 77236714 77236661 ID=Msa0094130-mRNA-1:exon:27337;Parent=Msa0094130-mRNA-1
chr1_2 exon 77236837 77236907 77236837 ID=Msa0094130-mRNA-1:exon:27338;Parent=Msa0094130-mRNA-1
chr1_2 exon 77237841 77237895 77237841 ID=Msa0094130-mRNA-1:exon:27339;Parent=Msa0094130-mRNA-1
chr1_2 exon 77237988 77238083 77237988 ID=Msa0094130-mRNA-1:exon:27340;Parent=Msa0094130-mRNA-1
chr1_2 exon 77238969 77239097 77238969 ID=Msa0094130-mRNA-1:exon:27341;Parent=Msa0094130-mRNA-1
chr1_2 exon 77239213 77239295 77239213 ID=Msa0094130-mRNA-1:exon:27342;Parent=Msa0094130-mRNA-1
chr1_2 exon 77239390 77239620 77239390 ID=Msa0094130-mRNA-1:exon:27343;Parent=Msa0094130-mRNA-1
chr1_2 exon 77240490 77240622 77240490 ID=Msa0094130-mRNA-1:exon:27344;Parent=Msa0094130-mRNA-1
chr1_2 exon 77240700 77240807 77240700 ID=Msa0094130-mRNA-1:exon:27345;Parent=Msa0094130-mRNA-1
chr1_2 exon 77241564 77241695 77241564 ID=Msa0094130-mRNA-1:exon:27346;Parent=Msa0094130-mRNA-1
chr1_2 exon 77241952 77242008 77241952 ID=Msa0094130-mRNA-1:exon:27347;Parent=Msa0094130-mRNA-1
chr1_2 exon 77242195 77242292 77242195 ID=Msa0094130-mRNA-1:exon:27348;Parent=Msa0094130-mRNA-1
chr1_2 exon 77242439 77242497 77242439 ID=Msa0094130-mRNA-1:exon:27349;Parent=Msa0094130-mRNA-1
chr1_2 exon 77242594 77242705 77242594 ID=Msa0094130-mRNA-1:exon:27350;Parent=Msa0094130-mRNA-1
chr1_2 exon 77243338 77243438 77243338 ID=Msa0094130-mRNA-1:exon:27351;Parent=Msa0094130-mRNA-1
chr1_2 exon 77243861 77244551 77243861 ID=Msa0094130-mRNA-1:exon:27352;Parent=Msa0094130-mRNA-1
chr1_2 five_prime_UTR 77231526 77231787 77231526 ID=Msa0094130-mRNA-1:five_prime_utr;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77231788 77231838 77231788 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77232753 77232831 77232753 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77233165 77233247 77233165 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77233336 77233485 77233336 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77234135 77234250 77234135 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77234888 77234993 77234888 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77235338 77235409 77235338 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77235503 77235618 77235503 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77236004 77236136 77236004 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77236496 77236573 77236496 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77236661 77236714 77236661 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77236837 77236907 77236837 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77237841 77237895 77237841 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77237988 77238083 77237988 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77238969 77239097 77238969 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77239213 77239295 77239213 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77239390 77239620 77239390 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77240490 77240622 77240490 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77240700 77240807 77240700 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77241564 77241695 77241564 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77241952 77242008 77241952 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77242195 77242292 77242195 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77242439 77242497 77242439 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77242594 77242705 77242594 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77243338 77243438 77243338 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 CDS 77243861 77244063 77243861 ID=Msa0094130-mRNA-1:cds;Parent=Msa0094130-mRNA-1
chr1_2 three_prime_UTR 77244064 77244551 77244064 ID=Msa0094130-mRNA-1:three_prime_utr;Parent=Msa0094130-mRNA-1
Gene Sequence

>Msa0094130

ATGGGTGCTTCTCTTCCTCCTAAAGAGGCCAATCTCTTCAAACTCATTGTTAAATCCTATGAAACCAAACAATACAAAAAGGGTCTCAAAGCAGCTGATGCCATTTTGAAAAAGTTTCCAGATCATGGAGAAACTTTATCGATGAAGGGTTTGACATTAAATTGCATGGATCGTAAATCTGAAGCATATGAACTGGTTCGCCAAGGATTGAAGAATGACCTTAAGAGTCATGTTTGCTGGCATGTTTATGGTCTTCTCTATCGGTCCGACCGAGAATACAGGGAAGCAATCAAGTGCTATCGAAATGCACTAAGGATAGATCCTGACAATATTGAAATCTTACGTGATCTATCTCTCTTACAGGCTCAAATGCGAGATTTATCTGGCTTTGTTGAGACTCGGCAACAACTTCTGACTCTCAAGTCAAATCATCGCATGAACTGGATTGGATTTGCCGTTTCACATCATTTGAACTCTAATGCATCGAAAGCTATTGAAATTCTGGAAGCATATGAAGGGACGTTAGAAGATGATTATCCTCCAGAAAATGAACGGATTGAGCATGGTGAAATGATTTTATATAAGGTCTCTTTGTTAGAGGAATGTGGATCTTTTGAAAGAGCTCTTGAGGAGTTGCAGAAGAAGGAGTCAAAAATTGTTGATAAGCTTGGATATAAAGAACAAGAGGTTTCACTAATAGTCAAGCTTGGTCGCTTAGAAGAAGGCGAGAAATTGTACCAGGCATTGCTTTCCATGAATCCAGACAATTATAGATATTATGAAGGCCTTCAACGATGTGTTGGGTTATATTCAGAAAATGGTCAATTTTCTCCTGATGAAATAGATCGATTAGATACCCTGTACAAAACACTTGGGCAGCAATTTAAGCGGTCATCTGCTGTTAAGAGAATACCATTAGATTTTCTTCAAGGTGATAGATTTCGAGAAGCAGCAGATAGTTATATTAGGCCTCTCCTAACTAAGGGAGTTCCATCTCTATTCTCAGATCTTTCTTCTTTATACAATCACCCTGGGAAGGCAGACATTTTGGAACAAATTATTCTTGAGTTAGAGAATTCTATTAGGACGACCGGTCAATACCCTGGGAGGGTGGAAAAAGAGCCCCCTTCAACTTTTTTGTGGACTTTGTTCTTGTTGGCTCAGCATTATGACAGGCGCGGCCAATATGAAATCGCACTTTCTAAAATCAATGAGGCTATAGAACACACACCTACTGTCATTGATCTATACTCTGCCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGCATTTGCAGATGAAGCTAGGTGTATGGATCTCGGTGATCGTTATGTTAATAGTGACTGTGTGAAACGCATGCTGCAGGCTGATCAGGTGGTTTTGGCAGAAAAAACTGCCGTGCTATTCACAAAAGACGGGGATCAACACAACAACCTCCATGACATGCAGTGCATGTGGTATGAGCTTGCCTCTGCTGAAAGCTACTTCCGCCAAGGGGATCTTGGGCTGTCTCTCAAAAAATTCTTGGCAGTGGAGAAGCATTATGCAGATATTACTGAAGACCAATTTGATTTTCATTCATACTGCTTAAGGAAAATGACATTGCGTACATATGTGGAAATGCTTCAATTTCAAGACAGATTGCATTCACATGCATATTTTCGCAAAGCAGCTGCTGGAGCTATCAGGTGTTACATAAAATTGCATGATTCTCCTCCAAAGTCAACAGCTGAGGAGGATGATGAAATGTCCAAGTTGCCTCCTGCTCAGAAAAAGAAATTGAAGCAAAAACAGAGAAAGGCAGAAGCAAGAGCTAAAAAAGAGGCAGAAGAGAAAAATGAAGAATCAAGTGCTAGTGGGATATCAAAGTCTGGGAAACGACATACAAAACCTGTTGATCCAGATCCTCGGGGGGAAAAGTTGTTACAGGTTGAAGATCCATTGTTGGAAGCCACAAAATACTTGAAGTTGCTGCTGAAGAATTCACCTGATTCATTGGAGACACACTTGCTCTCCTTTGAATTATACATGAGAAAACAGAAGATTTTGCTAGCCTTCCAGGCTTTAAAGCAATTACTAAGATTGGATGCTGAACACCCTGATTCTCATCGTTGTTTGATTAAATTCTTCCATAAAGTGGGATCCATGAATGCTCCTGTGACTGACAGTGAGAAACTCGTTTGGAGTGTCTTAGAAGCTGAGCGTCAAACTATAAGTCAGCTGCACGGGAAATCTCTTCTTGAGGCAAATAGCCTTTTCCTTGAAAAACATGAAGGTACTTTGATGCATAGAGCTGCTTTTGGAGAAATGATGTACATTTTAGATCCCAATAGAAGAGCTGAGGCTGTCAAGTTGATTGAAGGCTCAACAAATAACCCTGTGTCAAGCAATGGCGCGCTTGGACCAATCCGGGAATGGACACTTAAAGACTGTATTGCAGTTCATAAACTTCTTGGATCAGTCCTTGATGATCAAGATGCTGCATTGAGATGGAAAGTGCGATGTGCTGAGTTTTTCCCGTACTCCACATACTTTGAGGGTAGTCAAAGCTCTGCCTCGCCCAACTCTGCTCTCAATAAAATATGCAAGACCACCGTAAATGGTAGTTCTAGCCATTCACCGGGTGATAACGTTGTGGAATCTGCCACATCAAACGGCAAACTAGCATCATTTAAAGATCTCACTATCTAA
Protein sequence

>Msa0094130

MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALRIDPDNIEILRDLSLLQAQMRDLSGFVETRQQLLTLKSNHRMNWIGFAVSHHLNSNASKAIEILEAYEGTLEDDYPPENERIEHGEMILYKVSLLEECGSFERALEELQKKESKIVDKLGYKEQEVSLIVKLGRLEEGEKLYQALLSMNPDNYRYYEGLQRCVGLYSENGQFSPDEIDRLDTLYKTLGQQFKRSSAVKRIPLDFLQGDRFREAADSYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQIILELENSIRTTGQYPGRVEKEPPSTFLWTLFLLAQHYDRRGQYEIALSKINEAIEHTPTVIDLYSAKSRILKHAGDLAAAAAFADEARCMDLGDRYVNSDCVKRMLQADQVVLAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESYFRQGDLGLSLKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLQFQDRLHSHAYFRKAAAGAIRCYIKLHDSPPKSTAEEDDEMSKLPPAQKKKLKQKQRKAEARAKKEAEEKNEESSASGISKSGKRHTKPVDPDPRGEKLLQVEDPLLEATKYLKLLLKNSPDSLETHLLSFELYMRKQKILLAFQALKQLLRLDAEHPDSHRCLIKFFHKVGSMNAPVTDSEKLVWSVLEAERQTISQLHGKSLLEANSLFLEKHEGTLMHRAAFGEMMYILDPNRRAEAVKLIEGSTNNPVSSNGALGPIREWTLKDCIAVHKLLGSVLDDQDAALRWKVRCAEFFPYSTYFEGSQSSASPNSALNKICKTTVNGSSSHSPGDNVVESATSNGKLASFKDLTI*