Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451960 | sp|Q9SJ05|SK1_ARATH | 65.179 | 224 | 77 | 1 | 8 | 231 | 72 | 294 | 7.87e-106 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451960 | A0A396GU32 | 96.507 | 229 | 8 | 0 | 8 | 236 | 58 | 286 | 6.90e-162 | 458 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101880 | Msa1451960 | 0.868222 | 7.666369e-66 | -8.615850e-47 |
| Msa0470690 | Msa1451960 | 0.803962 | 2.714061e-49 | -8.615850e-47 |
| Msa0333720 | Msa1451960 | -0.807262 | 5.509347e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451960 | MtrunA17_Chr8g0383021 | 96.507 | 229 | 8 | 0 | 8 | 236 | 58 | 286 | 1.33e-165 | 458 |
| Msa1451960 | MtrunA17_Chr6g0462401 | 33.500 | 200 | 132 | 1 | 24 | 223 | 79 | 277 | 2.44e-33 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1451960 | AT2G21940.2 | 65.179 | 224 | 77 | 1 | 8 | 231 | 72 | 294 | 8.00e-107 | 310 |
| Msa1451960 | AT2G21940.5 | 65.179 | 224 | 77 | 1 | 8 | 231 | 72 | 294 | 8.00e-107 | 310 |
| Msa1451960 | AT2G21940.1 | 65.179 | 224 | 77 | 1 | 8 | 231 | 72 | 294 | 8.00e-107 | 310 |
| Msa1451960 | AT2G21940.4 | 64.348 | 230 | 80 | 2 | 2 | 231 | 68 | 295 | 1.92e-106 | 310 |
| Msa1451960 | AT4G39540.2 | 64.378 | 233 | 78 | 4 | 8 | 236 | 65 | 296 | 2.32e-104 | 304 |
| Msa1451960 | AT4G39540.1 | 64.378 | 233 | 78 | 4 | 8 | 236 | 65 | 296 | 2.32e-104 | 304 |
| Msa1451960 | AT4G39540.3 | 61.826 | 241 | 79 | 5 | 8 | 236 | 65 | 304 | 8.29e-101 | 295 |
| Msa1451960 | AT2G21940.7 | 65.591 | 186 | 63 | 1 | 8 | 193 | 72 | 256 | 1.49e-89 | 266 |
| Msa1451960 | AT2G21940.3 | 65.591 | 186 | 63 | 1 | 8 | 193 | 72 | 256 | 1.49e-89 | 266 |
| Msa1451960 | AT2G21940.6 | 65.591 | 186 | 63 | 1 | 8 | 193 | 72 | 256 | 1.49e-89 | 266 |
| Msa1451960 | AT3G26900.3 | 35.000 | 200 | 118 | 2 | 25 | 223 | 75 | 263 | 5.42e-29 | 110 |
| Msa1451960 | AT3G26900.1 | 35.000 | 200 | 118 | 2 | 25 | 223 | 75 | 263 | 5.42e-29 | 110 |
| Msa1451960 | AT3G26900.2 | 35.000 | 200 | 118 | 2 | 25 | 223 | 75 | 263 | 5.42e-29 | 110 |
Find 76 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACACTATCTTCTTCTATTT+TGG | 0.019290 | tig0033638:-28315 | Msa1451960:three_prime_UTR |
| GGTCTCCCATGGATCTTAAT+TGG | 0.223631 | tig0033638:-28293 | Msa1451960:three_prime_UTR |
| TAGCAACAGTTTGAATTTAT+AGG | 0.238678 | tig0033638:-28511 | Msa1451960:three_prime_UTR |
| TCCTACAGCTGCAATTCTTT+TGG | 0.250684 | tig0033638:+29465 | None:intergenic |
| TAATTTGTATACCAATTAAT+AGG | 0.274313 | tig0033638:+29910 | None:intergenic |
| TAAATTCAAACTGTTGCTAT+TGG | 0.325138 | tig0033638:+28515 | None:intergenic |
| AGTACGATTTGGCGCAATTA+AGG | 0.325683 | tig0033638:-28641 | Msa1451960:three_prime_UTR |
| TACAACATACAATCTCTTAG+AGG | 0.353725 | tig0033638:+28342 | None:intergenic |
| GCTGATATATTCAAACTCTA+TGG | 0.355113 | tig0033638:-31269 | Msa1451960:CDS |
| CTGTTGTGCGGCCTATTAAT+TGG | 0.372746 | tig0033638:-29921 | Msa1451960:intron |
| AGAATCTTTCTTTCGTGATA+AGG | 0.381877 | tig0033638:-31246 | Msa1451960:CDS |
| CACTAAGTGGGGTCGTCAAC+CGG | 0.387217 | tig0033638:+28453 | None:intergenic |
| ACTAATGTGTGTTCTGTAGA+TGG | 0.389060 | tig0033638:+28230 | None:intergenic |
| TTGATTGAGGAAAAGGTTGA+TGG | 0.393326 | tig0033638:-31302 | Msa1451960:CDS |
| TGATACATTGATTGAGGAAA+AGG | 0.400790 | tig0033638:-31309 | Msa1451960:CDS |
| AAACCGTTATATTTAACTTC+AGG | 0.402788 | tig0033638:-28162 | None:intergenic |
| AACAACACTGCACAACAGTA+TGG | 0.406812 | tig0033638:+28618 | None:intergenic |
| GTAGCTTCAACATTGGAATC+TGG | 0.413868 | tig0033638:-33601 | Msa1451960:CDS |
| CGTATAGAAACAAGCAAGAC+TGG | 0.418415 | tig0033638:+28259 | None:intergenic |
| TGCAAGATAGTAGTACGATT+TGG | 0.419145 | tig0033638:-28652 | Msa1451960:exon |
| TTGCAGGCGCTAGAGCAAAT+TGG | 0.422109 | tig0033638:-28705 | Msa1451960:intron |
| TGTATATACTATATATATTC+CGG | 0.424719 | tig0033638:-28472 | Msa1451960:three_prime_UTR |
| AAATTGACATGCAGGAATGA+TGG | 0.432438 | tig0033638:-33224 | Msa1451960:intron |
| GCATAAACTTGTCATTTCTA+CGG | 0.448579 | tig0033638:-29953 | Msa1451960:CDS |
| TACTCTTGTAGCTTCAACAT+TGG | 0.455200 | tig0033638:-33608 | Msa1451960:CDS |
| GGCTCTGGGAAGACAACTGT+GGG | 0.455572 | tig0033638:-33202 | Msa1451960:CDS |
| CATGCAGGAATGATGGGCTC+TGG | 0.472739 | tig0033638:-33217 | Msa1451960:intron |
| CATAAACTTGTCATTTCTAC+GGG | 0.483514 | tig0033638:-29952 | Msa1451960:CDS |
| ACCTCAATTGCAATTACAGT+TGG | 0.484010 | tig0033638:+28864 | None:intergenic |
| AAAGCACCAATTAAGATCCA+TGG | 0.488358 | tig0033638:+28287 | None:intergenic |
| ATGTAGAAGAGGGCGAGAAT+TGG | 0.491757 | tig0033638:+29441 | None:intergenic |
| ATACCTGAAGTTAAATATAA+CGG | 0.500126 | tig0033638:+28159 | None:intergenic |
| CGACCCCACTTAGTGGGATA+AGG | 0.503384 | tig0033638:-28445 | Msa1451960:three_prime_UTR |
| TGAGGAAGAGTTGATTCTAA+AGG | 0.507211 | tig0033638:-33560 | Msa1451960:intron |
| CTTGTCATTTCTACGGGTGG+AGG | 0.508472 | tig0033638:-29946 | Msa1451960:CDS |
| TCCAACTGTAATTGCAATTG+AGG | 0.509960 | tig0033638:-28865 | Msa1451960:intron |
| TTCTAATGAGACTCTAGCAT+TGG | 0.514662 | tig0033638:+29200 | None:intergenic |
| CGGTTGACGACCCCACTTAG+TGG | 0.520350 | tig0033638:-28452 | Msa1451960:three_prime_UTR |
| AATTGACATGCAGGAATGAT+GGG | 0.520917 | tig0033638:-33223 | Msa1451960:intron |
| GAGCGCTGTATATATGTTGT+TGG | 0.523615 | tig0033638:-33325 | Msa1451960:intron |
| ATACAGCGCTCATTTAAATA+CGG | 0.538346 | tig0033638:+33337 | None:intergenic |
| GGATGTACCAGTGGAAGCAT+TGG | 0.540460 | tig0033638:-29488 | Msa1451960:CDS |
| GCAGATATAGCAACAAAACT+AGG | 0.541610 | tig0033638:-28912 | Msa1451960:intron |
| AATGACAAGTTTATGCATCA+AGG | 0.546618 | tig0033638:+29960 | None:intergenic |
| TAATAGTGATACATTGATTG+AGG | 0.548025 | tig0033638:-31315 | Msa1451960:intron |
| CCTCTTCTACATGATGAAGC+AGG | 0.552664 | tig0033638:-29430 | Msa1451960:CDS |
| TAGAATCAACTCTTCCTCAA+GGG | 0.555001 | tig0033638:+33564 | None:intergenic |
| TTCAGCCTTATCCCACTAAG+TGG | 0.557471 | tig0033638:+28440 | None:intergenic |
| AAAAGTTATGCATGAAAATG+TGG | 0.560894 | tig0033638:+28564 | None:intergenic |
| TCAGCCTTATCCCACTAAGT+GGG | 0.561700 | tig0033638:+28441 | None:intergenic |
| AGAATCAACTCTTCCTCAAG+GGG | 0.563689 | tig0033638:+33565 | None:intergenic |
| ATCTTTCTTTCGTGATAAGG+AGG | 0.564203 | tig0033638:-31243 | Msa1451960:intron |
| TTAGAATCAACTCTTCCTCA+AGG | 0.565895 | tig0033638:+33563 | None:intergenic |
| GGTTGACGACCCCACTTAGT+GGG | 0.576686 | tig0033638:-28451 | Msa1451960:three_prime_UTR |
| AAACTTGTCATTTCTACGGG+TGG | 0.578063 | tig0033638:-29949 | Msa1451960:CDS |
| ATGCAGGAATGATGGGCTCT+GGG | 0.586330 | tig0033638:-33216 | Msa1451960:intron |
| AAGCACCAATTAAGATCCAT+GGG | 0.588698 | tig0033638:+28288 | None:intergenic |
| CCTGCTTCATCATGTAGAAG+AGG | 0.591927 | tig0033638:+29430 | None:intergenic |
| CTGCTTCATCATGTAGAAGA+GGG | 0.599098 | tig0033638:+29431 | None:intergenic |
| CCAGGAAATATATGCACAAG+GGG | 0.600293 | tig0033638:-29525 | Msa1451960:intron |
| GGACAGCTTATTCAATGCCT+CGG | 0.606731 | tig0033638:+29981 | None:intergenic |
| AGGGCATAAGTTTCCCCTTG+AGG | 0.610167 | tig0033638:-33578 | Msa1451960:CDS |
| TGAGACTCTAGCATTGGCGT+TGG | 0.610419 | tig0033638:+29206 | None:intergenic |
| GCTTCAACATTGGAATCTGG+AGG | 0.615047 | tig0033638:-33598 | Msa1451960:CDS |
| GGGCTCTGGGAAGACAACTG+TGG | 0.617107 | tig0033638:-33203 | Msa1451960:CDS |
| TGCCAGGAAATATATGCACA+AGG | 0.620476 | tig0033638:-29527 | Msa1451960:intron |
| GTATAGAAACAAGCAAGACT+GGG | 0.626959 | tig0033638:+28260 | None:intergenic |
| GCCAGGAAATATATGCACAA+GGG | 0.635533 | tig0033638:-29526 | Msa1451960:intron |
| GCCAAAAGAATTGCAGCTGT+AGG | 0.647442 | tig0033638:-29466 | Msa1451960:CDS |
| CAGCCTTATCCCACTAAGTG+GGG | 0.657129 | tig0033638:+28442 | None:intergenic |
| CGGGTGGAGGTGCTGTTGTG+CGG | 0.658200 | tig0033638:-29933 | Msa1451960:CDS |
| CTTCAACATTGGAATCTGGA+GGG | 0.659832 | tig0033638:-33597 | Msa1451960:CDS |
| TGTTTGGTTGGATGTACCAG+TGG | 0.666819 | tig0033638:-29497 | Msa1451960:CDS |
| CAGGAAATATATGCACAAGG+GGG | 0.768658 | tig0033638:-29524 | Msa1451960:CDS |
| AGCAGGAGATGCATACACAG+CGG | 0.786140 | tig0033638:-29413 | Msa1451960:intron |
| GCTCTGGGAAGACAACTGTG+GGG | 0.798287 | tig0033638:-33201 | Msa1451960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTATAAATTTATTA+AGG | - | tig0033638:29762-29781 | Msa1451960:intron | 0.0% |
| !!! | AATTTTTTATTAAATTTTGG+TGG | + | tig0033638:29138-29157 | None:intergenic | 10.0% |
| !! | TAAAATTTATTGTAAATAGA+AGG | + | tig0033638:29961-29980 | None:intergenic | 10.0% |
| !! | ATATGTATGTATATATATAT+GGG | + | tig0033638:30073-30092 | None:intergenic | 10.0% |
| !! | TATATGTATGTATATATATA+TGG | + | tig0033638:30074-30093 | None:intergenic | 10.0% |
| !! | TTGTTTAAAAAATATCATGT+AGG | - | tig0033638:28883-28902 | Msa1451960:CDS | 15.0% |
| !! | TGTTTAAAAAATATCATGTA+GGG | - | tig0033638:28884-28903 | Msa1451960:CDS | 15.0% |
| !! | TCTCTCTATATATATATATA+GGG | - | tig0033638:29627-29646 | Msa1451960:intron | 15.0% |
| !!! | ACTTTAAAGAAAACAATATT+TGG | + | tig0033638:29835-29854 | None:intergenic | 15.0% |
| !!! | TAAATTTTAATAGAGACTAA+AGG | - | tig0033638:29972-29991 | Msa1451960:CDS | 15.0% |
| !!! | AAATTTTAATAGAGACTAAA+GGG | - | tig0033638:29973-29992 | Msa1451960:CDS | 15.0% |
| !! | TATGTATGTATATATATATG+GGG | + | tig0033638:30072-30091 | None:intergenic | 15.0% |
| !! | TACATTTAATATTTGATATG+AGG | - | tig0033638:30214-30233 | Msa1451960:intron | 15.0% |
| !! | TATTATGCAATAGATAAAAA+CGG | - | tig0033638:30283-30302 | Msa1451960:intron | 15.0% |
| !! | TAAGATGTAATTAAAGAAAT+AGG | + | tig0033638:30647-30666 | None:intergenic | 15.0% |
| !! | CAATTATATCAAATTATTAC+CGG | + | tig0033638:30741-30760 | None:intergenic | 15.0% |
| !!! | ATGTTATTTTAAACAAAGTT+GGG | + | tig0033638:31367-31386 | None:intergenic | 15.0% |
| !!! | AATGTTATTTTAAACAAAGT+TGG | + | tig0033638:31368-31387 | None:intergenic | 15.0% |
| !!! | TAATTTGTATACCAATTAAT+AGG | + | tig0033638:31877-31896 | None:intergenic | 15.0% |
| !! | AAACATCAAAAGATAAAAAA+TGG | + | tig0033638:31914-31933 | None:intergenic | 15.0% |
| !! | TGTGAATTTAATCATAAATA+AGG | + | tig0033638:32005-32024 | None:intergenic | 15.0% |
| !!! | TACTAAAACATCAAATATTT+TGG | - | tig0033638:32105-32124 | Msa1451960:intron | 15.0% |
| !! | AAACATCAAAAGAAAAAAAA+TGG | - | tig0033638:32146-32165 | Msa1451960:intron | 15.0% |
| !!! | ATATTAATCATCCATAATTT+TGG | - | tig0033638:32442-32461 | Msa1451960:intron | 15.0% |
| !!! | AAATATTTTTTATGCAAGTT+TGG | + | tig0033638:32471-32490 | None:intergenic | 15.0% |
| !! | TGTATATACTATATATATTC+CGG | - | tig0033638:33312-33331 | Msa1451960:intron | 15.0% |
| !! | CTTTATATATATATAGTGAG+AGG | - | tig0033638:28796-28815 | Msa1451960:intron | 20.0% |
| !!! | ATATTAAAATCTGAGATGAA+TGG | + | tig0033638:29023-29042 | None:intergenic | 20.0% |
| !!! | ATTTCCAATTTAAAATTCGA+AGG | + | tig0033638:29075-29094 | None:intergenic | 20.0% |
| !!! | TCGAATTTTAAATTGGAAAT+TGG | - | tig0033638:29075-29094 | Msa1451960:intron | 20.0% |
| !! | TTAAATTGGAAATTGGATTT+AGG | - | tig0033638:29082-29101 | Msa1451960:intron | 20.0% |
| !!! | AAATCGTTTTCTTTAAACAA+TGG | - | tig0033638:29169-29188 | Msa1451960:intron | 20.0% |
| !!! | TTTTAATTCATGAATATCCA+TGG | - | tig0033638:29229-29248 | Msa1451960:CDS | 20.0% |
| !!! | ATTGAAAGTTTTCTAAGAAA+TGG | - | tig0033638:29255-29274 | Msa1451960:CDS | 20.0% |
| !! | AAACAGAGAACAAATATTAA+TGG | - | tig0033638:29325-29344 | Msa1451960:intron | 20.0% |
| !!! | AACCATTTGATTTAATCTAA+GGG | - | tig0033638:29542-29561 | Msa1451960:intron | 20.0% |
| !! | CTCTCTCTATATATATATAT+AGG | - | tig0033638:29626-29645 | Msa1451960:intron | 20.0% |
| !!! | ATTAGCCTAAATAATTAAGT+AGG | + | tig0033638:29746-29765 | None:intergenic | 20.0% |
| !!! | TCAATTTTGTAACTAACTTA+AGG | + | tig0033638:29938-29957 | None:intergenic | 20.0% |
| !! | TTCATATTCAAGTGATATTA+AGG | - | tig0033638:30248-30267 | Msa1451960:intron | 20.0% |
| !! | TCATATTCAAGTGATATTAA+GGG | - | tig0033638:30249-30268 | Msa1451960:intron | 20.0% |
| !! | ATTATGCAATAGATAAAAAC+GGG | - | tig0033638:30284-30303 | Msa1451960:intron | 20.0% |
| !! | AAAACAATTACTTTGATTCA+TGG | - | tig0033638:30399-30418 | Msa1451960:intron | 20.0% |
| !! | TTGATTCATGGTTATATTAT+AGG | - | tig0033638:30411-30430 | Msa1451960:intron | 20.0% |
| !! | AATAAAAGATCTGTAAATGT+GGG | + | tig0033638:31079-31098 | None:intergenic | 20.0% |
| !!! | AGTGAGTTTTTTTTTTTTGA+GGG | - | tig0033638:31255-31274 | Msa1451960:CDS | 20.0% |
| !!! | TGTTATTTTAAACAAAGTTG+GGG | + | tig0033638:31366-31385 | None:intergenic | 20.0% |
| !!! | AAAGGTTTTCATAAACAATT+AGG | - | tig0033638:31432-31451 | Msa1451960:intron | 20.0% |
| !! | TAATAGTCAAACAGAATAAT+AGG | + | tig0033638:31698-31717 | None:intergenic | 20.0% |
| !! | ATCAAAAGATAAAAAATGGA+GGG | + | tig0033638:31910-31929 | None:intergenic | 20.0% |
| !!! | TAACTCCTTTAATAGTTTTA+TGG | - | tig0033638:32044-32063 | Msa1451960:intron | 20.0% |
| !! | ATCAAAAGAAAAAAAATGGA+GGG | - | tig0033638:32150-32169 | Msa1451960:intron | 20.0% |
| !!! | TATTGGTTCAAGTAAGAAAA+TGG | + | tig0033638:28397-28416 | None:intergenic | 25.0% |
| !! | GATCTATTCTGCAATTTTAT+TGG | + | tig0033638:28414-28433 | None:intergenic | 25.0% |
| ! | CAATACAAGTATGATTACTT+TGG | - | tig0033638:28521-28540 | Msa1451960:three_prime_UTR | 25.0% |
| !! | TTAGCTATTCATTTTGTGAT+TGG | - | tig0033638:28625-28644 | Msa1451960:three_prime_UTR | 25.0% |
| ! | AATTTCTTGTCTTTGTTCAT+AGG | - | tig0033638:28658-28677 | Msa1451960:exon | 25.0% |
| ! | ATTTCTTGTCTTTGTTCATA+GGG | - | tig0033638:28659-28678 | Msa1451960:exon | 25.0% |
| ! | ATCAAATGTACCATTTGAAT+AGG | - | tig0033638:28735-28754 | Msa1451960:intron | 25.0% |
| ! | TTCTTTATTGCCTATTCAAA+TGG | + | tig0033638:28748-28767 | None:intergenic | 25.0% |
| ! | AAAACAGTGGAATAGAATTA+TGG | + | tig0033638:28973-28992 | None:intergenic | 25.0% |
| ! | ATGCAAATTATCAAAAACAG+TGG | + | tig0033638:28986-29005 | None:intergenic | 25.0% |
| !! | TTCACCTTCGAATTTTAAAT+TGG | - | tig0033638:29068-29087 | Msa1451960:intron | 25.0% |
| !! | CAACCATTTGATTTAATCTA+AGG | - | tig0033638:29541-29560 | Msa1451960:intron | 25.0% |
| ! | ATTTATAATGAGAGATGAGA+GGG | + | tig0033638:29579-29598 | None:intergenic | 25.0% |
| ! | AATTTATAATGAGAGATGAG+AGG | + | tig0033638:29580-29599 | None:intergenic | 25.0% |
| !!! | AACTTGCACCTTAATTTTTT+GGG | + | tig0033638:29671-29690 | None:intergenic | 25.0% |
| !!! | TAACTTGCACCTTAATTTTT+TGG | + | tig0033638:29672-29691 | None:intergenic | 25.0% |
| ! | ACTTGCACCTTAATAAATTT+AGG | + | tig0033638:29711-29730 | None:intergenic | 25.0% |
| ! | CTAAATAATTAAGTAGGTGT+AGG | + | tig0033638:29740-29759 | None:intergenic | 25.0% |
| ! | CTACACCTACTTAATTATTT+AGG | - | tig0033638:29738-29757 | Msa1451960:intron | 25.0% |
| !! | ATATTTGGAATGATGAAAGT+GGG | + | tig0033638:29820-29839 | None:intergenic | 25.0% |
| !! | AATATTTGGAATGATGAAAG+TGG | + | tig0033638:29821-29840 | None:intergenic | 25.0% |
| ! | TTCTTTATAGCCTATTCAAA+TGG | + | tig0033638:30162-30181 | None:intergenic | 25.0% |
| ! | CATATTCAAGTGATATTAAG+GGG | - | tig0033638:30250-30269 | Msa1451960:intron | 25.0% |
| ! | TTATGCAATAGATAAAAACG+GGG | - | tig0033638:30285-30304 | Msa1451960:intron | 25.0% |
| !!! | CAAAGTAATTGTTTTGCAAT+AGG | + | tig0033638:30394-30413 | None:intergenic | 25.0% |
| !! | TAATAGTGATACATTGATTG+AGG | - | tig0033638:30469-30488 | Msa1451960:intron | 25.0% |
| ! | TATATAGAAGCAGAAAACAA+GGG | + | tig0033638:30673-30692 | None:intergenic | 25.0% |
| ! | ATATATAGAAGCAGAAAACA+AGG | + | tig0033638:30674-30693 | None:intergenic | 25.0% |
| ! | ATATATTATAAACTGCTCCA+AGG | - | tig0033638:30688-30707 | Msa1451960:intron | 25.0% |
| ! | CAATAAAAGATCTGTAAATG+TGG | + | tig0033638:31080-31099 | None:intergenic | 25.0% |
| ! | ATTGGTTGATTGTACATATA+TGG | - | tig0033638:31197-31216 | Msa1451960:intron | 25.0% |
| !!! | GAGTGAGTTTTTTTTTTTTG+AGG | - | tig0033638:31254-31273 | Msa1451960:CDS | 25.0% |
| !!! | GTGAGTTTTTTTTTTTTGAG+GGG | - | tig0033638:31256-31275 | Msa1451960:CDS | 25.0% |
| !!! | GTTATTTTAAACAAAGTTGG+GGG | + | tig0033638:31365-31384 | None:intergenic | 25.0% |
| !!! | TATGAAAACCTTTTTAAGAG+AGG | + | tig0033638:31425-31444 | None:intergenic | 25.0% |
| ! | ATAAACAATTAGGTACTTAC+TGG | - | tig0033638:31442-31461 | Msa1451960:intron | 25.0% |
| ! | TTGTTAAATAACAGCTATAG+CGG | - | tig0033638:31494-31513 | Msa1451960:intron | 25.0% |
| !! | TTGTAACAAGCTTTTATTGA+AGG | + | tig0033638:31588-31607 | None:intergenic | 25.0% |
| !!! | TTCAATAAAAGCTTGTTACA+AGG | - | tig0033638:31587-31606 | Msa1451960:intron | 25.0% |
| ! | TAAGATATTGTGAATTGTTC+CGG | - | tig0033638:31724-31743 | Msa1451960:intron | 25.0% |
| ! | TCAAAAGATAAAAAATGGAG+GGG | + | tig0033638:31909-31928 | None:intergenic | 25.0% |
| ! | CATCAAAAGATAAAAAATGG+AGG | + | tig0033638:31911-31930 | None:intergenic | 25.0% |
| ! | ACACACCATAAAACTATTAA+AGG | + | tig0033638:32052-32071 | None:intergenic | 25.0% |
| ! | CATCAAAAGAAAAAAAATGG+AGG | - | tig0033638:32149-32168 | Msa1451960:intron | 25.0% |
| ! | TACAAATACATGTAAAGATG+AGG | + | tig0033638:32226-32245 | None:intergenic | 25.0% |
| ! | CATCTTTACATGTATTTGTA+TGG | - | tig0033638:32226-32245 | Msa1451960:intron | 25.0% |
| ! | TACATGTATTTGTATGGAAA+TGG | - | tig0033638:32232-32251 | Msa1451960:intron | 25.0% |
| !! | AAGATATGTGTATTTTGTCA+TGG | - | tig0033638:32682-32701 | Msa1451960:intron | 25.0% |
| !!! | TCACTCTTTTTTATTGGATA+AGG | + | tig0033638:32759-32778 | None:intergenic | 25.0% |
| !!! | ACAAGATCACTCTTTTTTAT+TGG | + | tig0033638:32765-32784 | None:intergenic | 25.0% |
| ! | TTGCAATTTGATTGTTATCA+TGG | + | tig0033638:32826-32845 | None:intergenic | 25.0% |
| ! | AAATTGAAATGGAGTTACAA+AGG | + | tig0033638:32968-32987 | None:intergenic | 25.0% |
| !!! | CATTTCAATTTGTTAGCTTT+GGG | - | tig0033638:32977-32996 | Msa1451960:intron | 25.0% |
| ! | AAGGATTATTAGATTTGCAT+CGG | + | tig0033638:33052-33071 | None:intergenic | 25.0% |
| ! | AAAAGTTATGCATGAAAATG+TGG | + | tig0033638:33223-33242 | None:intergenic | 25.0% |
| ! | TAAATTCAAACTGTTGCTAT+TGG | + | tig0033638:33272-33291 | None:intergenic | 25.0% |
| ! | TAGCAACAGTTTGAATTTAT+AGG | - | tig0033638:33273-33292 | Msa1451960:intron | 25.0% |
| !!! | TTTTTGCTGTAAATTGAGTT+CGG | - | tig0033638:33393-33412 | Msa1451960:intron | 25.0% |
| !! | ACACTATCTTCTTCTATTTT+GGG | - | tig0033638:33470-33489 | Msa1451960:intron | 25.0% |
| ! | GTTTTGCTTAAAAGAATGGA+AGG | + | tig0033638:28315-28334 | None:intergenic | 30.0% |
| !! | GATGGTTTTGCTTAAAAGAA+TGG | + | tig0033638:28319-28338 | None:intergenic | 30.0% |
| ATGATAGTACTATCTGTTGA+TGG | + | tig0033638:28337-28356 | None:intergenic | 30.0% | |
| ATACAGCGCTCATTTAAATA+CGG | + | tig0033638:28450-28469 | None:intergenic | 30.0% | |
| ! | ATGTTGTTGGTAAGTTTCTT+TGG | - | tig0033638:28472-28491 | Msa1451960:three_prime_UTR | 30.0% |
| ATACTTTCAAATTGACATGC+AGG | - | tig0033638:28552-28571 | Msa1451960:three_prime_UTR | 30.0% | |
| AGCCATTGGATTAAAATCAA+AGG | - | tig0033638:28847-28866 | Msa1451960:intron | 30.0% | |
| !! | AGCCTTTGATTTTAATCCAA+TGG | + | tig0033638:28852-28871 | None:intergenic | 30.0% |
| AATTCGAAGGTGAAAAAACT+AGG | + | tig0033638:29062-29081 | None:intergenic | 30.0% | |
| TATTTGTGCTCTTACAAGTT+CGG | - | tig0033638:29111-29130 | Msa1451960:intron | 30.0% | |
| !! | ACAATGGATTAGAAGAATAG+AGG | - | tig0033638:29185-29204 | Msa1451960:intron | 30.0% |
| AGAAAACTTTCAATTGTCCA+TGG | + | tig0033638:29249-29268 | None:intergenic | 30.0% | |
| GAAATGGAAAAACAGTAGAA+AGG | - | tig0033638:29271-29290 | Msa1451960:intron | 30.0% | |
| ! | AAGTTTTCATCCTTTCTCAA+TGG | - | tig0033638:29302-29321 | Msa1451960:intron | 30.0% |
| GACCCTTAGATTAAATCAAA+TGG | + | tig0033638:29547-29566 | None:intergenic | 30.0% | |
| TATATATAGAGAGAGAGAGA+GGG | + | tig0033638:29621-29640 | None:intergenic | 30.0% | |
| ATATATATAGAGAGAGAGAG+AGG | + | tig0033638:29622-29641 | None:intergenic | 30.0% | |
| !!! | ACTTGCACCTTAATTTTTTG+GGG | + | tig0033638:29670-29689 | None:intergenic | 30.0% |
| ACACCCACCTAAATTTATTA+AGG | - | tig0033638:29701-29720 | Msa1451960:intron | 30.0% | |
| GCACCTTAATAAATTTAGGT+GGG | + | tig0033638:29707-29726 | None:intergenic | 30.0% | |
| TGCACCTTAATAAATTTAGG+TGG | + | tig0033638:29708-29727 | None:intergenic | 30.0% | |
| !!! | CATAGTTGTTTTTCATGCAT+TGG | + | tig0033638:29914-29933 | None:intergenic | 30.0% |
| GGTGTTAGTAAAATACTAGT+GGG | - | tig0033638:29994-30013 | Msa1451960:intron | 30.0% | |
| ACCAAATGTACCATTTGAAT+AGG | - | tig0033638:30149-30168 | Msa1451960:intron | 30.0% | |
| TATGCAATAGATAAAAACGG+GGG | - | tig0033638:30286-30305 | Msa1451960:intron | 30.0% | |
| ! | TGATACATTGATTGAGGAAA+AGG | - | tig0033638:30475-30494 | Msa1451960:intron | 30.0% |
| GCTGATATATTCAAACTCTA+TGG | - | tig0033638:30515-30534 | Msa1451960:intron | 30.0% | |
| AGAATCTTTCTTTCGTGATA+AGG | - | tig0033638:30538-30557 | Msa1451960:intron | 30.0% | |
| ! | TGTAAAGTACCATCATGAAT+TGG | + | tig0033638:30883-30902 | None:intergenic | 30.0% |
| TGCTACATACCAATTCATAA+TGG | - | tig0033638:30919-30938 | Msa1451960:intron | 30.0% | |
| TGTCAAGTACCATTATGAAT+TGG | + | tig0033638:30931-30950 | None:intergenic | 30.0% | |
| ! | TAGTTTGTAGAGACAACAAA+TGG | - | tig0033638:31152-31171 | Msa1451960:intron | 30.0% |
| AGTTTGTAGAGACAACAAAT+GGG | - | tig0033638:31153-31172 | Msa1451960:intron | 30.0% | |
| TATGTACAATCAACCAATAG+AGG | + | tig0033638:31195-31214 | None:intergenic | 30.0% | |
| CAAACAGAATAATAGGAGTT+AGG | + | tig0033638:31691-31710 | None:intergenic | 30.0% | |
| AATGACAAGTTTATGCATCA+AGG | + | tig0033638:31827-31846 | None:intergenic | 30.0% | |
| ! | GCATAAACTTGTCATTTCTA+CGG | - | tig0033638:31831-31850 | Msa1451960:intron | 30.0% |
| ! | CATAAACTTGTCATTTCTAC+GGG | - | tig0033638:31832-31851 | Msa1451960:intron | 30.0% |
| CAAAAGATAAAAAATGGAGG+GGG | + | tig0033638:31908-31927 | None:intergenic | 30.0% | |
| !!! | TCTTTTGATGTTTTAGCTCT+TGG | - | tig0033638:31921-31940 | Msa1451960:intron | 30.0% |
| ATTAAAGGAGTTATGACCTT+TGG | + | tig0033638:32037-32056 | None:intergenic | 30.0% | |
| ! | TTATGGTGTGTTTTTCATCA+AGG | - | tig0033638:32061-32080 | Msa1451960:intron | 30.0% |
| ! | TATGGTGTGTTTTTCATCAA+GGG | - | tig0033638:32062-32081 | Msa1451960:intron | 30.0% |
| GTAAATTGTTTCGCATCAAT+AGG | - | tig0033638:32393-32412 | Msa1451960:intron | 30.0% | |
| ! | AAGTTTGGTGACCAAAATTA+TGG | + | tig0033638:32456-32475 | None:intergenic | 30.0% |
| CCAAAGCTAACAAATTGAAA+TGG | + | tig0033638:32979-32998 | None:intergenic | 30.0% | |
| !! | CCATTTCAATTTGTTAGCTT+TGG | - | tig0033638:32976-32995 | Msa1451960:intron | 30.0% |
| ! | GCAAATTGGCAACTTTTTAA+AGG | - | tig0033638:33093-33112 | Msa1451960:intron | 30.0% |
| !! | AATTGGCAACTTTTTAAAGG+CGG | - | tig0033638:33096-33115 | Msa1451960:intron | 30.0% |
| ! | TTTTCATGCATAACTTTTGC+TGG | - | tig0033638:33225-33244 | Msa1451960:intron | 30.0% |
| ! | TTTCATGCATAACTTTTGCT+GGG | - | tig0033638:33226-33245 | Msa1451960:intron | 30.0% |
| TACAACATACAATCTCTTAG+AGG | + | tig0033638:33445-33464 | None:intergenic | 30.0% | |
| ! | GACACTATCTTCTTCTATTT+TGG | - | tig0033638:33469-33488 | Msa1451960:intron | 30.0% |
| TACTCTTGTAGCTTCAACAT+TGG | - | tig0033638:28176-28195 | Msa1451960:three_prime_UTR | 35.0% | |
| TAGAATCAACTCTTCCTCAA+GGG | + | tig0033638:28223-28242 | None:intergenic | 35.0% | |
| TTAGAATCAACTCTTCCTCA+AGG | + | tig0033638:28224-28243 | None:intergenic | 35.0% | |
| ! | TGAGGAAGAGTTGATTCTAA+AGG | - | tig0033638:28224-28243 | Msa1451960:three_prime_UTR | 35.0% |
| ATCATACTTGTATTGCATGC+CGG | + | tig0033638:28516-28535 | None:intergenic | 35.0% | |
| AAATTGACATGCAGGAATGA+TGG | - | tig0033638:28560-28579 | Msa1451960:three_prime_UTR | 35.0% | |
| AATTGACATGCAGGAATGAT+GGG | - | tig0033638:28561-28580 | Msa1451960:three_prime_UTR | 35.0% | |
| ! | GCTACACAATTTACGTGTTT+TGG | + | tig0033638:28697-28716 | None:intergenic | 35.0% |
| TTGAAGCAAACAGGGATAAA+AGG | + | tig0033638:28918-28937 | None:intergenic | 35.0% | |
| TTCTCTGTTTCCATTGAGAA+AGG | + | tig0033638:29315-29334 | None:intergenic | 35.0% | |
| AGAAACGTTTCAGCTTTCAA+AGG | - | tig0033638:29439-29458 | Msa1451960:CDS | 35.0% | |
| GAAACGTTTCAGCTTTCAAA+GGG | - | tig0033638:29440-29459 | Msa1451960:CDS | 35.0% | |
| AAAGTGGGTGTAAATTAGTG+AGG | + | tig0033638:29805-29824 | None:intergenic | 35.0% | |
| GGGTGTTAGTAAAATACTAG+TGG | - | tig0033638:29993-30012 | Msa1451960:intron | 35.0% | |
| !! | TAACTTGCACCTTAGTGTTT+TGG | - | tig0033638:30027-30046 | Msa1451960:intron | 35.0% |
| ! | AACTTGCACCTTAGTGTTTT+GGG | - | tig0033638:30028-30047 | Msa1451960:intron | 35.0% |
| GCCTATTCAAATGGTACATT+TGG | + | tig0033638:28739-28758 | None:intergenic | 35.0% | |
| TTGATTGAGGAAAAGGTTGA+TGG | - | tig0033638:30482-30501 | Msa1451960:intron | 35.0% | |
| ATCTTTCTTTCGTGATAAGG+AGG | - | tig0033638:30541-30560 | Msa1451960:intron | 35.0% | |
| AACATGTGTGAATGTCATGT+CGG | - | tig0033638:30777-30796 | Msa1451960:intron | 35.0% | |
| GCTGAAATACCAATTCATGA+TGG | - | tig0033638:30871-30890 | Msa1451960:intron | 35.0% | |
| AAAGATCTGTAAATGTGGGA+CGG | + | tig0033638:31075-31094 | None:intergenic | 35.0% | |
| AGAAGAATATTTCTCCAACC+AGG | - | tig0033638:31104-31123 | Msa1451960:intron | 35.0% | |
| GGTTGATTGTACATATATGG+CGG | - | tig0033638:31200-31219 | Msa1451960:intron | 35.0% | |
| !!! | TTTTTTTTTGAGGGGCTACT+AGG | - | tig0033638:31264-31283 | Msa1451960:CDS | 35.0% |
| ! | CATTTGCTTTCTTGTTATGC+TGG | - | tig0033638:31314-31333 | Msa1451960:intron | 35.0% |
| !!! | AGAGAGGAGGATTTGTTTTA+GGG | + | tig0033638:31409-31428 | None:intergenic | 35.0% |
| !! | AAGAGAGGAGGATTTGTTTT+AGG | + | tig0033638:31410-31429 | None:intergenic | 35.0% |
| CAAATCCTCCTCTCTTAAAA+AGG | - | tig0033638:31414-31433 | Msa1451960:intron | 35.0% | |
| !! | GAAAACCTTTTTAAGAGAGG+AGG | + | tig0033638:31422-31441 | None:intergenic | 35.0% |
| ! | CTTACTGGTTGTAGTTCATA+AGG | - | tig0033638:31457-31476 | Msa1451960:intron | 35.0% |
| !! | AAAAGCTTGTTACAAGGTTC+TGG | - | tig0033638:31593-31612 | Msa1451960:intron | 35.0% |
| !!! | TAGCCTATGGTTTTGTAACA+CGG | - | tig0033638:31748-31767 | Msa1451960:intron | 35.0% |
| ATTCACATGTGATAAGCCAA+AGG | - | tig0033638:32018-32037 | Msa1451960:intron | 35.0% | |
| TTCTAATGAGACTCTAGCAT+TGG | + | tig0033638:32587-32606 | None:intergenic | 35.0% | |
| ATCTTCCTGTTCTTTCTTAC+AGG | + | tig0033638:32667-32686 | None:intergenic | 35.0% | |
| GCAGATATAGCAACAAAACT+AGG | - | tig0033638:32872-32891 | Msa1451960:intron | 35.0% | |
| ! | ACAAATCAGACGCATCTTTT+CGG | + | tig0033638:32898-32917 | None:intergenic | 35.0% |
| TCCAACTGTAATTGCAATTG+AGG | - | tig0033638:32919-32938 | Msa1451960:intron | 35.0% | |
| ACCTCAATTGCAATTACAGT+TGG | + | tig0033638:32923-32942 | None:intergenic | 35.0% | |
| TGGGCAAACTAAAATGTTCA+CGG | - | tig0033638:32996-33015 | Msa1451960:intron | 35.0% | |
| ATAATCCTTCTGTATCTTGC+AGG | - | tig0033638:33063-33082 | Msa1451960:intron | 35.0% | |
| !! | TTTTTAAAGGCGGAAGATGA+TGG | - | tig0033638:33106-33125 | Msa1451960:intron | 35.0% |
| TGCAAGATAGTAGTACGATT+TGG | - | tig0033638:33132-33151 | Msa1451960:intron | 35.0% | |
| AAGCACCAATTAAGATCCAT+GGG | + | tig0033638:33499-33518 | None:intergenic | 35.0% | |
| ! | AAAGCACCAATTAAGATCCA+TGG | + | tig0033638:33500-33519 | None:intergenic | 35.0% |
| GTATAGAAACAAGCAAGACT+GGG | + | tig0033638:33527-33546 | None:intergenic | 35.0% | |
| ACTAATGTGTGTTCTGTAGA+TGG | + | tig0033638:33557-33576 | None:intergenic | 35.0% | |
| GTAGCTTCAACATTGGAATC+TGG | - | tig0033638:28183-28202 | Msa1451960:three_prime_UTR | 40.0% | |
| CTTCAACATTGGAATCTGGA+GGG | - | tig0033638:28187-28206 | Msa1451960:three_prime_UTR | 40.0% | |
| AGAATCAACTCTTCCTCAAG+GGG | + | tig0033638:28222-28241 | None:intergenic | 40.0% | |
| ! | GAGCGCTGTATATATGTTGT+TGG | - | tig0033638:28459-28478 | Msa1451960:three_prime_UTR | 40.0% |
| TCATACTTGTATTGCATGCC+GGG | + | tig0033638:28515-28534 | None:intergenic | 40.0% | |
| GAGCATCAAATGTTAGCCAT+TGG | - | tig0033638:28833-28852 | Msa1451960:intron | 40.0% | |
| AAGCAATGAACTGAGAGGAA+GGG | + | tig0033638:28944-28963 | None:intergenic | 40.0% | |
| AAACGAAGCAATGAACTGAG+AGG | + | tig0033638:28949-28968 | None:intergenic | 40.0% | |
| CGAAGGTGAAAAAACTAGGA+AGG | + | tig0033638:29058-29077 | None:intergenic | 40.0% | |
| ACGTAAATGCGTCTTCTTTC+TGG | + | tig0033638:29357-29376 | None:intergenic | 40.0% | |
| TGTGAATGAGAATGATGTGC+AGG | - | tig0033638:29394-29413 | Msa1451960:intron | 40.0% | |
| GTGAATGAGAATGATGTGCA+GGG | - | tig0033638:29395-29414 | Msa1451960:intron | 40.0% | |
| ACACCCACCCCAAAAAATTA+AGG | - | tig0033638:29660-29679 | Msa1451960:intron | 40.0% | |
| !!! | GCACCTTAATTTTTTGGGGT+GGG | + | tig0033638:29666-29685 | None:intergenic | 40.0% |
| !!! | TGCACCTTAATTTTTTGGGG+TGG | + | tig0033638:29667-29686 | None:intergenic | 40.0% |
| ! | ACTTGCACCTTAGTGTTTTG+GGG | - | tig0033638:30029-30048 | Msa1451960:intron | 40.0% |
| CAATAGATAAAAACGGGGGA+GGG | - | tig0033638:30290-30309 | Msa1451960:intron | 40.0% | |
| AATAGATAAAAACGGGGGAG+GGG | - | tig0033638:30291-30310 | Msa1451960:intron | 40.0% | |
| TATAAACTGCTCCAAGGAGA+CGG | - | tig0033638:30694-30713 | Msa1451960:intron | 40.0% | |
| GAATATTTCTCCAACCAGGT+AGG | - | tig0033638:31108-31127 | Msa1451960:intron | 40.0% | |
| !!! | GTTATGCTGGCTTCTAGTTT+TGG | - | tig0033638:31327-31346 | Msa1451960:intron | 40.0% |
| !!! | GAGGATTTGTTTTAGGGAGT+AGG | + | tig0033638:31403-31422 | None:intergenic | 40.0% |
| TTACAAAACCATAGGCTAGC+CGG | + | tig0033638:31746-31765 | None:intergenic | 40.0% | |
| TTGTTTACCATTTCAGACCG+AGG | - | tig0033638:31786-31805 | Msa1451960:intron | 40.0% | |
| ! | AAACTTGTCATTTCTACGGG+TGG | - | tig0033638:31835-31854 | Msa1451960:intron | 40.0% |
| ! | GTGTGTTTTTCATCAAGGGT+AGG | - | tig0033638:32066-32085 | Msa1451960:intron | 40.0% |
| TGGAGGGAGTAATAGTATTG+AGG | - | tig0033638:32166-32185 | Msa1451960:intron | 40.0% | |
| !! | TTGTATGGAAATGGATTGCC+AGG | - | tig0033638:32241-32260 | Msa1451960:intron | 40.0% |
| TGCCAGGAAATATATGCACA+AGG | - | tig0033638:32257-32276 | Msa1451960:intron | 40.0% | |
| GCCAGGAAATATATGCACAA+GGG | - | tig0033638:32258-32277 | Msa1451960:intron | 40.0% | |
| CCAGGAAATATATGCACAAG+GGG | - | tig0033638:32259-32278 | Msa1451960:intron | 40.0% | |
| CAGGAAATATATGCACAAGG+GGG | - | tig0033638:32260-32279 | Msa1451960:intron | 40.0% | |
| ! | TCCTACAGCTGCAATTCTTT+TGG | + | tig0033638:32322-32341 | None:intergenic | 40.0% |
| CTGCTTCATCATGTAGAAGA+GGG | + | tig0033638:32356-32375 | None:intergenic | 40.0% | |
| ACCAGTTGTAATTCACATGC+AGG | - | tig0033638:32507-32526 | Msa1451960:intron | 40.0% | |
| !! | TCTGCTCTTTTTGAAGAGAG+AGG | - | tig0033638:32544-32563 | Msa1451960:intron | 40.0% |
| CTGTTCTTTCTTACAGGATC+TGG | + | tig0033638:32661-32680 | None:intergenic | 40.0% | |
| CAGATCCTGTAAGAAAGAAC+AGG | - | tig0033638:32659-32678 | Msa1451960:intron | 40.0% | |
| ! | AATGGAGTTACAAAGGCATG+AGG | + | tig0033638:32961-32980 | None:intergenic | 40.0% |
| ! | AGTACGATTTGGCGCAATTA+AGG | - | tig0033638:33143-33162 | Msa1451960:intron | 40.0% |
| AACAACACTGCACAACAGTA+TGG | + | tig0033638:33169-33188 | None:intergenic | 40.0% | |
| CGTATAGAAACAAGCAAGAC+TGG | + | tig0033638:33528-33547 | None:intergenic | 40.0% | |
| GCTTCAACATTGGAATCTGG+AGG | - | tig0033638:28186-28205 | Msa1451960:three_prime_UTR | 45.0% | |
| AAGGGGAGTTGAAGCAAACA+GGG | + | tig0033638:28926-28945 | None:intergenic | 45.0% | |
| AGCAATGAACTGAGAGGAAG+GGG | + | tig0033638:28943-28962 | None:intergenic | 45.0% | |
| GAAGCAATGAACTGAGAGGA+AGG | + | tig0033638:28945-28964 | None:intergenic | 45.0% | |
| GCATTTACGTTTCTGCACTG+AGG | - | tig0033638:29367-29386 | Msa1451960:intron | 45.0% | |
| AATGAGAATGATGTGCAGGG+AGG | - | tig0033638:29398-29417 | Msa1451960:intron | 45.0% | |
| ! | GAGAGGGTGTATCAAATGAG+AGG | + | tig0033638:29605-29624 | None:intergenic | 45.0% |
| GCAATAGATAAAAACGGGGG+AGG | - | tig0033638:30289-30308 | Msa1451960:intron | 45.0% | |
| TTCGTGATAAGGAGGTCAGT+TGG | - | tig0033638:30549-30568 | Msa1451960:intron | 45.0% | |
| GATAAGGAGGTCAGTTGGAA+AGG | - | tig0033638:30554-30573 | Msa1451960:intron | 45.0% | |
| ATAAACTGCTCCAAGGAGAC+GGG | - | tig0033638:30695-30714 | Msa1451960:intron | 45.0% | |
| TTGACACTTAGCAGTGTCAC+AGG | - | tig0033638:30945-30964 | Msa1451960:intron | 45.0% | |
| ! | AGTTCCTTTTACCGAGTCAG+TGG | - | tig0033638:31044-31063 | Msa1451960:intron | 45.0% |
| !! | CATTCCACTGACTCGGTAAA+AGG | + | tig0033638:31051-31070 | None:intergenic | 45.0% |
| TCTCCAACCAGGTAGGATTT+CGG | - | tig0033638:31115-31134 | Msa1451960:intron | 45.0% | |
| TTACTAGCCGAAATCCTACC+TGG | + | tig0033638:31125-31144 | None:intergenic | 45.0% | |
| GTAGAGACAACAAATGGGCA+TGG | - | tig0033638:31158-31177 | Msa1451960:intron | 45.0% | |
| ! | GGAAAGAGTGTGACCTCTAT+TGG | - | tig0033638:31179-31198 | Msa1451960:intron | 45.0% |
| CTAGTAGCAAGCTGGAAAGA+GGG | + | tig0033638:31234-31253 | None:intergenic | 45.0% | |
| ! | GTGTCTGATGATGACATGTG+CGG | - | tig0033638:31646-31665 | Msa1451960:intron | 45.0% |
| CGACCGTGTTACAAAACCAT+AGG | + | tig0033638:31754-31773 | None:intergenic | 45.0% | |
| TTCAATGCCTCGGTCTGAAA+TGG | + | tig0033638:31796-31815 | None:intergenic | 45.0% | |
| GGACAGCTTATTCAATGCCT+CGG | + | tig0033638:31806-31825 | None:intergenic | 45.0% | |
| CTGTTGTGCGGCCTATTAAT+TGG | - | tig0033638:31863-31882 | Msa1451960:intron | 45.0% | |
| CCCCTTGTGCATATATTTCC+TGG | + | tig0033638:32262-32281 | None:intergenic | 45.0% | |
| TGTTTGGTTGGATGTACCAG+TGG | - | tig0033638:32287-32306 | Msa1451960:intron | 45.0% | |
| GCCAAAAGAATTGCAGCTGT+AGG | - | tig0033638:32318-32337 | Msa1451960:intron | 45.0% | |
| ATGTAGAAGAGGGCGAGAAT+TGG | + | tig0033638:32346-32365 | None:intergenic | 45.0% | |
| CCTGCTTCATCATGTAGAAG+AGG | + | tig0033638:32357-32376 | None:intergenic | 45.0% | |
| CCTCTTCTACATGATGAAGC+AGG | - | tig0033638:32354-32373 | Msa1451960:intron | 45.0% | |
| GCCTGCATGTGAATTACAAC+TGG | + | tig0033638:32511-32530 | None:intergenic | 45.0% | |
| ! | TCAGCCTTATCCCACTAAGT+GGG | + | tig0033638:33346-33365 | None:intergenic | 45.0% |
| ! | TTCAGCCTTATCCCACTAAG+TGG | + | tig0033638:33347-33366 | None:intergenic | 45.0% |
| !! | CTTCTATTTTGGGTCTCCCA+TGG | - | tig0033638:33480-33499 | Msa1451960:intron | 45.0% |
| GGTCTCCCATGGATCTTAAT+TGG | - | tig0033638:33491-33510 | Msa1451960:intron | 45.0% | |
| !!! | TTGAATTTTTTATTAAATTT+TGG | + | tig0033638:29141-29160 | None:intergenic | 5.0% |
| !!! | ATATAAATATTTGTATATTT+TGG | - | tig0033638:31969-31988 | Msa1451960:intron | 5.0% |
| AGGGCATAAGTTTCCCCTTG+AGG | - | tig0033638:28206-28225 | Msa1451960:three_prime_UTR | 50.0% | |
| GTCGATGTCTCGTGATTACC+CGG | - | tig0033638:28494-28513 | Msa1451960:three_prime_UTR | 50.0% | |
| !! | ATGCAGGAATGATGGGCTCT+GGG | - | tig0033638:28568-28587 | Msa1451960:three_prime_UTR | 50.0% |
| GAAGGGGAGTTGAAGCAAAC+AGG | + | tig0033638:28927-28946 | None:intergenic | 50.0% | |
| ATGATGTGCAGGGAGGAAGA+TGG | - | tig0033638:29405-29424 | Msa1451960:intron | 50.0% | |
| GCAGGGAGGAAGATGGAATA+TGG | - | tig0033638:29412-29431 | Msa1451960:intron | 50.0% | |
| CAGAAGCGAGTAAACGTGAG+AGG | - | tig0033638:29472-29491 | Msa1451960:CDS | 50.0% | |
| AAGCGAGTAAACGTGAGAGG+AGG | - | tig0033638:29475-29494 | Msa1451960:CDS | 50.0% | |
| !!! | TGCACCTTAGTGTTTTGGGG+TGG | - | tig0033638:30032-30051 | Msa1451960:intron | 50.0% |
| !!! | GCACCTTAGTGTTTTGGGGT+GGG | - | tig0033638:30033-30052 | Msa1451960:intron | 50.0% |
| TGTCGCAAACTGTCACGTGT+CGG | - | tig0033638:30800-30819 | Msa1451960:intron | 50.0% | |
| ! | GCACTGACACTTCACATCGA+AGG | + | tig0033638:30838-30857 | None:intergenic | 50.0% |
| TAGCCGAAATCCTACCTGGT+TGG | + | tig0033638:31121-31140 | None:intergenic | 50.0% | |
| CCTAGTAGCAAGCTGGAAAG+AGG | + | tig0033638:31235-31254 | None:intergenic | 50.0% | |
| !! | CCTCTTTCCAGCTTGCTACT+AGG | - | tig0033638:31232-31251 | Msa1451960:intron | 50.0% |
| ACTCACTCCTAGTAGCAAGC+TGG | + | tig0033638:31242-31261 | None:intergenic | 50.0% | |
| GTGAGTTGTCCTCTGCTTTC+TGG | - | tig0033638:31288-31307 | Msa1451960:CDS | 50.0% | |
| AGTTGTCCTCTGCTTTCTGG+AGG | - | tig0033638:31291-31310 | Msa1451960:CDS | 50.0% | |
| CAAATGCCTCCAGAAAGCAG+AGG | + | tig0033638:31300-31319 | None:intergenic | 50.0% | |
| GCTGTATCGCTACAGTGTAG+CGG | - | tig0033638:31518-31537 | Msa1451960:intron | 50.0% | |
| !! | GAATTGTTCCGGCTAGCCTA+TGG | - | tig0033638:31735-31754 | Msa1451960:intron | 50.0% |
| ! | CTTGTCATTTCTACGGGTGG+AGG | - | tig0033638:31838-31857 | Msa1451960:intron | 50.0% |
| ! | TGCACAAGGGGGTTAGTGTT+TGG | - | tig0033638:32271-32290 | Msa1451960:intron | 50.0% |
| ! | CAAGGGGGTTAGTGTTTGGT+TGG | - | tig0033638:32275-32294 | Msa1451960:intron | 50.0% |
| ! | GGATGTACCAGTGGAAGCAT+TGG | - | tig0033638:32296-32315 | Msa1451960:intron | 50.0% |
| ! | CTTTTGGCCAATGCTTCCAC+TGG | + | tig0033638:32306-32325 | None:intergenic | 50.0% |
| AGCAGGAGATGCATACACAG+CGG | - | tig0033638:32371-32390 | Msa1451960:intron | 50.0% | |
| !! | TGAGACTCTAGCATTGGCGT+TGG | + | tig0033638:32581-32600 | None:intergenic | 50.0% |
| TAGCGCCTGCAAGATACAGA+AGG | + | tig0033638:33071-33090 | None:intergenic | 50.0% | |
| TTGCAGGCGCTAGAGCAAAT+TGG | - | tig0033638:33079-33098 | Msa1451960:intron | 50.0% | |
| ! | CAGCCTTATCCCACTAAGTG+GGG | + | tig0033638:33345-33364 | None:intergenic | 50.0% |
| !! | CATGCAGGAATGATGGGCTC+TGG | - | tig0033638:28567-28586 | Msa1451960:three_prime_UTR | 55.0% |
| !! | GGCTCTGGGAAGACAACTGT+GGG | - | tig0033638:28582-28601 | Msa1451960:three_prime_UTR | 55.0% |
| !! | GCTCTGGGAAGACAACTGTG+GGG | - | tig0033638:28583-28602 | Msa1451960:three_prime_UTR | 55.0% |
| GCACCCACCCCAAAACACTA+AGG | + | tig0033638:30039-30058 | None:intergenic | 55.0% | |
| GGGGAGGGGTCAGTTATCAT+GGG | - | tig0033638:30305-30324 | Msa1451960:intron | 55.0% | |
| ! | GGACGGACATTCCACTGACT+CGG | + | tig0033638:31058-31077 | None:intergenic | 55.0% |
| AGCAAGCTGGAAAGAGGGAG+TGG | + | tig0033638:31229-31248 | None:intergenic | 55.0% | |
| CACTAAGTGGGGTCGTCAAC+CGG | + | tig0033638:33334-33353 | None:intergenic | 55.0% | |
| GGTTGACGACCCCACTTAGT+GGG | - | tig0033638:33333-33352 | Msa1451960:CDS | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | tig0033638:33339-33358 | Msa1451960:CDS | 55.0% | |
| !! | GGGCTCTGGGAAGACAACTG+TGG | - | tig0033638:28581-28600 | Msa1451960:three_prime_UTR | 60.0% |
| GGGGGAGGGGTCAGTTATCA+TGG | - | tig0033638:30304-30323 | Msa1451960:intron | 60.0% | |
| TCAGTGCTCTCCCGTCTCCT+TGG | + | tig0033638:30708-30727 | None:intergenic | 60.0% | |
| !! | GAGCACTGACACGTCGACAC+CGG | - | tig0033638:30719-30738 | Msa1451960:intron | 60.0% |
| CGGTTGACGACCCCACTTAG+TGG | - | tig0033638:33332-33351 | Msa1451960:CDS | 60.0% | |
| !! | CGGGTGGAGGTGCTGTTGTG+CGG | - | tig0033638:31851-31870 | Msa1451960:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0033638 | gene | 28165 | 33641 | 28165 | ID=Msa1451960;Name=Msa1451960 |
| tig0033638 | mRNA | 28165 | 33641 | 28165 | ID=Msa1451960-mRNA-1;Parent=Msa1451960;Name=Msa1451960-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|1|0.88|1|1|1|9|500|236 |
| tig0033638 | exon | 28165 | 28721 | 28165 | ID=Msa1451960-mRNA-1:exon:18308;Parent=Msa1451960-mRNA-1 |
| tig0033638 | exon | 28866 | 28930 | 28866 | ID=Msa1451960-mRNA-1:exon:18307;Parent=Msa1451960-mRNA-1 |
| tig0033638 | exon | 29199 | 29277 | 29199 | ID=Msa1451960-mRNA-1:exon:18306;Parent=Msa1451960-mRNA-1 |
| tig0033638 | exon | 29414 | 29543 | 29414 | ID=Msa1451960-mRNA-1:exon:18305;Parent=Msa1451960-mRNA-1 |
| tig0033638 | exon | 29922 | 30004 | 29922 | ID=Msa1451960-mRNA-1:exon:18304;Parent=Msa1451960-mRNA-1 |
| tig0033638 | exon | 31244 | 31331 | 31244 | ID=Msa1451960-mRNA-1:exon:18303;Parent=Msa1451960-mRNA-1 |
| tig0033638 | exon | 33160 | 33232 | 33160 | ID=Msa1451960-mRNA-1:exon:18302;Parent=Msa1451960-mRNA-1 |
| tig0033638 | exon | 33326 | 33380 | 33326 | ID=Msa1451960-mRNA-1:exon:18301;Parent=Msa1451960-mRNA-1 |
| tig0033638 | exon | 33561 | 33641 | 33561 | ID=Msa1451960-mRNA-1:exon:18300;Parent=Msa1451960-mRNA-1 |
| tig0033638 | CDS | 33561 | 33641 | 33561 | ID=Msa1451960-mRNA-1:cds;Parent=Msa1451960-mRNA-1 |
| tig0033638 | CDS | 33326 | 33380 | 33326 | ID=Msa1451960-mRNA-1:cds;Parent=Msa1451960-mRNA-1 |
| tig0033638 | CDS | 33160 | 33232 | 33160 | ID=Msa1451960-mRNA-1:cds;Parent=Msa1451960-mRNA-1 |
| tig0033638 | CDS | 31244 | 31331 | 31244 | ID=Msa1451960-mRNA-1:cds;Parent=Msa1451960-mRNA-1 |
| tig0033638 | CDS | 29922 | 30004 | 29922 | ID=Msa1451960-mRNA-1:cds;Parent=Msa1451960-mRNA-1 |
| tig0033638 | CDS | 29414 | 29543 | 29414 | ID=Msa1451960-mRNA-1:cds;Parent=Msa1451960-mRNA-1 |
| tig0033638 | CDS | 29199 | 29277 | 29199 | ID=Msa1451960-mRNA-1:cds;Parent=Msa1451960-mRNA-1 |
| tig0033638 | CDS | 28866 | 28930 | 28866 | ID=Msa1451960-mRNA-1:cds;Parent=Msa1451960-mRNA-1 |
| tig0033638 | CDS | 28665 | 28721 | 28665 | ID=Msa1451960-mRNA-1:cds;Parent=Msa1451960-mRNA-1 |
| tig0033638 | three_prime_UTR | 28165 | 28664 | 28165 | ID=Msa1451960-mRNA-1:three_prime_utr;Parent=Msa1451960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
