AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0333720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333720 MtrunA17_Chr2g0331141 98.930 187 2 0 1 187 1 187 9.68e-131 372
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0333720 AT3G16310.1 69.149 188 57 1 1 187 1 188 4.79e-86 259

Find 93 sgRNAs with CRISPR-Local

Find 353 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCTCTTATCAGTATTTC+TGG 0.127461 2_4:+51734369 Msa0333720:CDS
GGAGTCGAAAATTCTCTATT+TGG 0.255914 2_4:-51729658 None:intergenic
ACTTCAGGCCTTGCCACTTC+TGG 0.276867 2_4:-51729871 None:intergenic
AAAATTCTCTATTTGGAGTT+TGG 0.279174 2_4:-51729651 None:intergenic
TTTCCCCGGCGGGCATTAAC+AGG 0.283319 2_4:-51729448 None:intergenic
TGTTCACCACCACTCTTTGC+AGG 0.284691 2_4:-51729775 None:intergenic
AATGTGAAATTGAGAATTTA+AGG 0.290907 2_4:-51728256 None:intergenic
ACCTTGAATTTATTCTTGTT+TGG 0.308578 2_4:-51733848 None:intergenic
AAGGAATTTCGCTGGACTTC+AGG 0.331878 2_4:-51729886 None:intergenic
GCTTCGGACTTGCCTTTCGC+TGG 0.345748 2_4:-51729679 None:intergenic
TGATGTTGGTTCTCCATTCA+AGG 0.347716 2_4:+51734346 Msa0333720:CDS
GCTTGCTTCTCAAGGGAGTA+TGG 0.357282 2_4:+51733791 Msa0333720:CDS
TAATCCAGTATGCCTGATTC+TGG 0.358857 2_4:-51729586 None:intergenic
TTCTCCAGAATCAGGCATAC+TGG 0.373999 2_4:+51729582 Msa0333720:CDS
TCAAACTAAGCGAGCCTTGT+TGG 0.381381 2_4:-51729738 None:intergenic
GCGTGAAAACTTTGGTAATT+CGG 0.395948 2_4:+51729513 Msa0333720:CDS
GGCCTTGCCACTTCTGGTGG+TGG 0.396977 2_4:-51729865 None:intergenic
AGTATTTCTGGAAGAATTAG+TGG 0.397577 2_4:+51734381 Msa0333720:CDS
AAGGCTCGCTTAGTTTGAAT+TGG 0.399188 2_4:+51729743 Msa0333720:CDS
ATGTGAAATTGAGAATTTAA+GGG 0.400029 2_4:-51728255 None:intergenic
AGCACATCTTATGCTTTAAG+AGG 0.412178 2_4:+51729703 Msa0333720:CDS
GAAATCTTAATGAGGAAGAA+TGG 0.412872 2_4:+51729917 Msa0333720:CDS
CAGGAGCATCTTCTTCTCTA+TGG 0.417616 2_4:+51729491 Msa0333720:CDS
TGCTCCTGACTGGCTTGGAC+TGG 0.428965 2_4:-51729476 None:intergenic
ACTTAGTCTCAGGAGACATT+TGG 0.432323 2_4:-51729609 None:intergenic
AGCATAAGATGTGCTGGCTT+CGG 0.432389 2_4:-51729695 None:intergenic
TCTCTATGGCGTGAAAACTT+TGG 0.434782 2_4:+51729505 Msa0333720:CDS
TTCTCTATTTGGAGTTTGGA+TGG 0.437107 2_4:-51729647 None:intergenic
CTTGCCACTTCTGGTGGTGG+AGG 0.448887 2_4:-51729862 None:intergenic
GCTCGCTTAGTTTGAATTGG+TGG 0.454126 2_4:+51729746 Msa0333720:CDS
CTTCCAGAAATACTGATAAG+AGG 0.461729 2_4:-51734372 None:intergenic
GTCGAGGGTGTGGTTCAGCC+TGG 0.461947 2_4:+51729823 Msa0333720:CDS
GGCTGAACCACACCCTCGAC+TGG 0.463862 2_4:-51729820 None:intergenic
TTATTGTCTGACTTAGTCTC+AGG 0.468844 2_4:-51729619 None:intergenic
TATACTTCCGGCTCTGATGT+TGG 0.469180 2_4:+51734332 Msa0333720:CDS
AGCTACCCGCTTGCTTCTCA+AGG 0.471229 2_4:+51733783 Msa0333720:CDS
ATTAAGATTTCCTGCAGGTA+AGG 0.475811 2_4:-51729905 None:intergenic
GTGAACAAGAGGAGAAAGGA+AGG 0.476290 2_4:+51729791 Msa0333720:CDS
ATCCCCTGTTAATGCCCGCC+GGG 0.480958 2_4:+51729444 Msa0333720:CDS
TCCAAACAAGAATAAATTCA+AGG 0.483541 2_4:+51733847 Msa0333720:CDS
AAATCTTAATGAGGAAGAAT+GGG 0.484177 2_4:+51729918 Msa0333720:CDS
AAGGGAGTATGGAATGGAAA+TGG 0.484764 2_4:+51733802 Msa0333720:CDS
GAAGATGCTCCTGACTGGCT+TGG 0.495482 2_4:-51729481 None:intergenic
GGTGGTGAACAAGAGGAGAA+AGG 0.505138 2_4:+51729787 Msa0333720:CDS
TCAGGCCTTGCCACTTCTGG+TGG 0.505586 2_4:-51729868 None:intergenic
GCGCAAAGAACTCCTAGGTC+TGG 0.511122 2_4:+51729391 Msa0333720:CDS
TCTTAAAGCATAAGATGTGC+TGG 0.519255 2_4:-51729701 None:intergenic
CTGCAGGTAAGGAATTTCGC+TGG 0.519335 2_4:-51729894 None:intergenic
CATCCCCTGTTAATGCCCGC+CGG 0.522742 2_4:+51729443 Msa0333720:CDS
GAGAAGAAGATGCTCCTGAC+TGG 0.526749 2_4:-51729486 None:intergenic
TCTCTATTTGGAGTTTGGAT+GGG 0.529308 2_4:-51729646 None:intergenic
GAAGTACCTGGTAGTGGTGG+TGG 0.530353 2_4:-51728308 None:intergenic
TCCTCATTAAGATTTCCTGC+AGG 0.533575 2_4:-51729910 None:intergenic
CAGCGAAATTCCTTACCTGC+AGG 0.534512 2_4:+51729895 Msa0333720:CDS
CTTCTCAAGGGAGTATGGAA+TGG 0.535701 2_4:+51733796 Msa0333720:CDS
GGGTTCTCCAGTCGAGGGTG+TGG 0.537698 2_4:+51729813 Msa0333720:CDS
CCACAGCGCAAAGAACTCCT+AGG 0.538182 2_4:+51729386 Msa0333720:CDS
ACTGGAAAACTTTCCCCGGC+GGG 0.548506 2_4:-51729458 None:intergenic
GAGAGAGAAGTACCTGGTAG+TGG 0.550034 2_4:-51728314 None:intergenic
GCACATCTTATGCTTTAAGA+GGG 0.552808 2_4:+51729704 Msa0333720:CDS
TCTTCCTCCACCACCAGAAG+TGG 0.556002 2_4:+51729858 Msa0333720:CDS
TACTCCCTTGAGAAGCAAGC+GGG 0.558278 2_4:-51733788 None:intergenic
TTGGACTGGAAAACTTTCCC+CGG 0.559593 2_4:-51729462 None:intergenic
TGATAAGAGGAATCCTTGAA+TGG 0.565132 2_4:-51734359 None:intergenic
TTCCCCGGCGGGCATTAACA+GGG 0.567742 2_4:-51729447 None:intergenic
TGGAGAACCAACATCAGAGC+CGG 0.572330 2_4:-51734339 None:intergenic
AAAGTCTGATCTATCTTCCA+AGG 0.574341 2_4:-51729560 None:intergenic
AGGAAGGGGTTCTCCAGTCG+AGG 0.579447 2_4:+51729807 Msa0333720:CDS
AATTCGCCACCACCACTACC+AGG 0.581143 2_4:+51728302 Msa0333720:five_prime_UTR
ACCTGCAGGAAATCTTAATG+AGG 0.582251 2_4:+51729909 Msa0333720:CDS
TCCCCGGCGGGCATTAACAG+GGG 0.586228 2_4:-51729446 None:intergenic
GAACAAGAGGAGAAAGGAAG+GGG 0.588864 2_4:+51729793 Msa0333720:CDS
CTCCACCACCAGAAGTGGCA+AGG 0.589454 2_4:+51729863 Msa0333720:CDS
TGAACAAGAGGAGAAAGGAA+GGG 0.599791 2_4:+51729792 Msa0333720:CDS
GGATCACGAAGCATAACAAA+GGG 0.601161 2_4:-51733827 None:intergenic
AAAGAGTGGTGGTGAACAAG+AGG 0.606401 2_4:+51729780 Msa0333720:CDS
CCTAGGAGTTCTTTGCGCTG+TGG 0.609099 2_4:-51729386 None:intergenic
GCTACCCGCTTGCTTCTCAA+GGG 0.626196 2_4:+51733784 Msa0333720:CDS
GGAAGAGTAATCAATGCACC+AGG 0.629675 2_4:-51729841 None:intergenic
GTGGTGGCGAATTGAAGTGA+AGG 0.630469 2_4:-51728292 None:intergenic
GACTGGAAAACTTTCCCCGG+CGG 0.634463 2_4:-51729459 None:intergenic
AGAGAAGTACCTGGTAGTGG+TGG 0.635221 2_4:-51728311 None:intergenic
CACATCTTATGCTTTAAGAG+GGG 0.638647 2_4:+51729705 Msa0333720:CDS
TGGATCACGAAGCATAACAA+AGG 0.638709 2_4:-51733828 None:intergenic
AGTGACTGTCTACCAGACCT+AGG 0.639843 2_4:-51729403 None:intergenic
TCCCCTGTTAATGCCCGCCG+GGG 0.661914 2_4:+51729445 Msa0333720:CDS
GGAAGGGGTTCTCCAGTCGA+GGG 0.662892 2_4:+51729808 Msa0333720:CDS
ATACTCCCTTGAGAAGCAAG+CGG 0.664654 2_4:-51733789 None:intergenic
TTTCAGTGAGAAGAGAACGT+TGG 0.668921 2_4:-51728178 None:intergenic
GGGGTGCAGCAAAACCAACA+AGG 0.670858 2_4:+51729724 Msa0333720:CDS
TGGTCGTCACCTGCAAAGAG+TGG 0.678630 2_4:+51729766 Msa0333720:CDS
TCGTCACCTGCAAAGAGTGG+TGG 0.691867 2_4:+51729769 Msa0333720:CDS
TGGTGGCGAATTGAAGTGAA+GGG 0.710442 2_4:-51728291 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATAGTAATTTAATTTCAT+AGG + chr2_4:51728603-51728622 Msa0333720:intron 10.0%
!!! TATTTGTTAATTTTTTTTTG+GGG - chr2_4:51732429-51732448 None:intergenic 10.0%
!! ACAAAACAAAAAAAAAACAA+AGG - chr2_4:51728452-51728471 None:intergenic 15.0%
!!! AACTTCTTTTTTTTATTTAG+TGG - chr2_4:51730136-51730155 None:intergenic 15.0%
!! AGAATTAAATCAAAACAAAA+TGG - chr2_4:51730350-51730369 None:intergenic 15.0%
!! AGAAAAAACAAAATAAGATA+TGG - chr2_4:51730664-51730683 None:intergenic 15.0%
!!! TATTTTGTTTTTTCTTTTCT+CGG + chr2_4:51730669-51730688 Msa0333720:intron 15.0%
!! TGCAAATTATTTCAATTTAT+TGG + chr2_4:51730730-51730749 Msa0333720:intron 15.0%
!! AAATTATTTCAATTTATTGG+AGG + chr2_4:51730733-51730752 Msa0333720:intron 15.0%
!!! CTTTTTTCAAAATTCATAAA+GGG - chr2_4:51730831-51730850 None:intergenic 15.0%
!!! TCTTTTTTCAAAATTCATAA+AGG - chr2_4:51730832-51730851 None:intergenic 15.0%
!! ATTTAAATTTCAAATAGGAT+GGG - chr2_4:51732563-51732582 None:intergenic 15.0%
!! AATTTAAATTTCAAATAGGA+TGG - chr2_4:51732564-51732583 None:intergenic 15.0%
!! CCAAAATTTAAATTTCAAAT+AGG - chr2_4:51732568-51732587 None:intergenic 15.0%
!!! CCTATTTGAAATTTAAATTT+TGG + chr2_4:51732565-51732584 Msa0333720:intron 15.0%
!!! ATTTGAAATTTAAATTTTGG+TGG + chr2_4:51732568-51732587 Msa0333720:intron 15.0%
!!! ATTAGGTTAATTTTTTTTCT+AGG + chr2_4:51732854-51732873 Msa0333720:intron 15.0%
!!! TTAGGTTAATTTTTTTTCTA+GGG + chr2_4:51732855-51732874 Msa0333720:intron 15.0%
!! TCAACATACTAATAAAAATA+AGG + chr2_4:51733170-51733189 Msa0333720:intron 15.0%
!! CAACATACTAATAAAAATAA+GGG + chr2_4:51733171-51733190 Msa0333720:intron 15.0%
!! TTATAAAGACTTAAAAGATT+AGG + chr2_4:51733488-51733507 Msa0333720:intron 15.0%
!! TATAAAGACTTAAAAGATTA+GGG + chr2_4:51733489-51733508 Msa0333720:intron 15.0%
!! ATGTGAAATTGAGAATTTAA+GGG - chr2_4:51728258-51728277 None:intergenic 20.0%
!! AATGTGAAATTGAGAATTTA+AGG - chr2_4:51728259-51728278 None:intergenic 20.0%
!!! TCAACTTTTTTTAGTGAATT+TGG + chr2_4:51729284-51729303 Msa0333720:intron 20.0%
!!! GTTTTTATACATTTGTTTCT+TGG + chr2_4:51729306-51729325 Msa0333720:intron 20.0%
!!! CCTTATAAATAGTTTTAAAG+TGG - chr2_4:51730023-51730042 None:intergenic 20.0%
!!! CCACTTTAAAACTATTTATA+AGG + chr2_4:51730020-51730039 Msa0333720:intron 20.0%
!!! AACAATGAAGATTTTTCATT+GGG - chr2_4:51730587-51730606 None:intergenic 20.0%
!! TTTATGATAAAAAGCTATGT+AGG - chr2_4:51730778-51730797 None:intergenic 20.0%
!!! ACGATTTTAACACAAAATTT+CGG - chr2_4:51730923-51730942 None:intergenic 20.0%
!!! TTTTTGTTAACTAGTTGATT+TGG + chr2_4:51731014-51731033 Msa0333720:intron 20.0%
!!! TTTTATTAAGTGCATATCAA+AGG - chr2_4:51731247-51731266 None:intergenic 20.0%
!!! CTAAGTTTTTAATCGAATAT+TGG + chr2_4:51731546-51731565 Msa0333720:intron 20.0%
!!! TTTTTTTCTTTCCACATTTT+AGG + chr2_4:51731766-51731785 Msa0333720:intron 20.0%
!! ATTAATGCATTAGAAATAGA+GGG - chr2_4:51732509-51732528 None:intergenic 20.0%
!! AATTAATGCATTAGAAATAG+AGG - chr2_4:51732510-51732529 None:intergenic 20.0%
!!! TATTTTCAAATTTTCATGCT+TGG + chr2_4:51732652-51732671 Msa0333720:intron 20.0%
!!! TACATTTAATTGTGGTTTTA+TGG + chr2_4:51732684-51732703 Msa0333720:intron 20.0%
!!! TATGGTTTTGAAATTTTGTT+TGG + chr2_4:51732702-51732721 Msa0333720:intron 20.0%
!! TAATAGTATGCCTAAAAATA+AGG - chr2_4:51732732-51732751 None:intergenic 20.0%
!!! TTTCTCTCTTTTATTAAACA+CGG + chr2_4:51732779-51732798 Msa0333720:intron 20.0%
!!! TTTGGATTTTTAGTAACATT+AGG + chr2_4:51732837-51732856 Msa0333720:intron 20.0%
!!! ATCTTCTTTGTCTATTATTT+TGG + chr2_4:51732963-51732982 Msa0333720:intron 20.0%
!!! TGTCTATTATTTTGGTTTTA+TGG + chr2_4:51732971-51732990 Msa0333720:intron 20.0%
!!! TCTTTCATTGATTAATATCT+TGG + chr2_4:51733389-51733408 Msa0333720:intron 20.0%
!! TGTAAAAACTATTTCATGTT+AGG + chr2_4:51733570-51733589 Msa0333720:intron 20.0%
!! ATTCTAATAAAGTTCAGTAA+TGG + chr2_4:51734190-51734209 Msa0333720:intron 20.0%
! CAATTAGTTGAACAATTTGA+TGG + chr2_4:51728476-51728495 Msa0333720:intron 25.0%
! AAAACTACAAGTTATTCCAT+GGG - chr2_4:51728652-51728671 None:intergenic 25.0%
! CAAAATTATCTCCATGTTAA+GGG + chr2_4:51728921-51728940 Msa0333720:intron 25.0%
!! ACAATCGCTTATTGATTATA+CGG + chr2_4:51729085-51729104 Msa0333720:intron 25.0%
!!! TATGAATAAGCTATTTCTAC+AGG - chr2_4:51729138-51729157 None:intergenic 25.0%
!! TATACATTTGTTTCTTGGTT+TGG + chr2_4:51729311-51729330 Msa0333720:intron 25.0%
!! AAAATTCTCTATTTGGAGTT+TGG - chr2_4:51729654-51729673 None:intergenic 25.0%
! AAATCTTAATGAGGAAGAAT+GGG + chr2_4:51729918-51729937 Msa0333720:CDS 25.0%
!! TTACATTTGATTTACCGATA+AGG + chr2_4:51729980-51729999 Msa0333720:intron 25.0%
! GTAAAATGTACCATATTTCT+AGG - chr2_4:51730052-51730071 None:intergenic 25.0%
! AGTGATAATTCTCAAAACTT+TGG - chr2_4:51730438-51730457 None:intergenic 25.0%
!! ACAATGAAGATTTTTCATTG+GGG - chr2_4:51730586-51730605 None:intergenic 25.0%
!! CAACAATGAAGATTTTTCAT+TGG - chr2_4:51730588-51730607 None:intergenic 25.0%
! ATCATAAAATTTCTGTTGTC+TGG + chr2_4:51730790-51730809 Msa0333720:intron 25.0%
!!! CGATTTTAACACAAAATTTC+GGG - chr2_4:51730922-51730941 None:intergenic 25.0%
! AAGTAATAAACGTGTAGAAT+CGG + chr2_4:51731285-51731304 Msa0333720:intron 25.0%
! AAAGTTATAAACAAAGCTCA+CGG - chr2_4:51731733-51731752 None:intergenic 25.0%
! GAGAAATTGTGAATCTTAAA+AGG - chr2_4:51731822-51731841 None:intergenic 25.0%
! GATACATGTGGTATAAATAA+TGG - chr2_4:51731980-51731999 None:intergenic 25.0%
! ACTCAGTGATATAATATGAT+TGG + chr2_4:51732155-51732174 Msa0333720:intron 25.0%
! CTAATAAGATTAAGGAGTAA+GGG - chr2_4:51732458-51732477 None:intergenic 25.0%
! TTGCAAACCTAATAAGATTA+AGG - chr2_4:51732466-51732485 None:intergenic 25.0%
!! GAAATAGAGGGAAATTTTTA+GGG - chr2_4:51732497-51732516 None:intergenic 25.0%
!! AGAAATAGAGGGAAATTTTT+AGG - chr2_4:51732498-51732517 None:intergenic 25.0%
!!! TAAATTTTGGTGGAATTTAG+TGG + chr2_4:51732578-51732597 Msa0333720:intron 25.0%
! TGGAGTTTGTATTGTTAATT+GGG + chr2_4:51732598-51732617 Msa0333720:intron 25.0%
! ATACGCAATACATTTAATTG+TGG + chr2_4:51732676-51732695 Msa0333720:intron 25.0%
!!! GGCTTTTCATTTTTGATTTT+TGG + chr2_4:51732819-51732838 Msa0333720:intron 25.0%
!! TTTTCAATTGCTTCTATTCA+TGG + chr2_4:51732923-51732942 Msa0333720:intron 25.0%
! AAATCATTTAGAAGCAAGTT+TGG - chr2_4:51733016-51733035 None:intergenic 25.0%
! TTTGTGTGAGATTTATGTTA+TGG - chr2_4:51733077-51733096 None:intergenic 25.0%
!!! TTTTAGTTCGAATATGATGT+CGG + chr2_4:51733230-51733249 Msa0333720:intron 25.0%
! AATGACATCATTTATCTCTT+TGG - chr2_4:51733311-51733330 None:intergenic 25.0%
! CCAAATATTTAACATATGCA+AGG - chr2_4:51733337-51733356 None:intergenic 25.0%
! CCTTGCATATGTTAAATATT+TGG + chr2_4:51733334-51733353 Msa0333720:intron 25.0%
! CTTATGCAACTTATAAAACT+TGG + chr2_4:51733415-51733434 Msa0333720:intron 25.0%
! TGCAGAAGTTAAATGTTATA+GGG + chr2_4:51733454-51733473 Msa0333720:intron 25.0%
! AACACTACTAACATGAAATA+CGG - chr2_4:51733614-51733633 None:intergenic 25.0%
! TCCAAACAAGAATAAATTCA+AGG + chr2_4:51733847-51733866 Msa0333720:CDS 25.0%
! ACCTTGAATTTATTCTTGTT+TGG - chr2_4:51733851-51733870 None:intergenic 25.0%
! GTTAAGATTTAGAAGAAGAA+TGG + chr2_4:51733869-51733888 Msa0333720:intron 25.0%
! TATAGCTAGAAATGTAACAT+AGG + chr2_4:51733944-51733963 Msa0333720:intron 25.0%
! ATAGCTAGAAATGTAACATA+GGG + chr2_4:51733945-51733964 Msa0333720:intron 25.0%
! CACAACTAAACTCTATATAT+AGG - chr2_4:51734096-51734115 None:intergenic 25.0%
!!! TAGGATCATTTTTATACTTC+CGG + chr2_4:51734320-51734339 Msa0333720:intron 25.0%
ACTGAAATTGAAAAACGAAG+AGG + chr2_4:51728194-51728213 Msa0333720:five_prime_UTR 30.0%
! CGAGTTTTTGTGTATTCAAA+CGG - chr2_4:51728358-51728377 None:intergenic 30.0%
GCTGAAAAATCCTTACAAAA+CGG + chr2_4:51728406-51728425 Msa0333720:intron 30.0%
!! TCTATTTTTCCCCTTTGATT+TGG + chr2_4:51728553-51728572 Msa0333720:intron 30.0%
!! CTATTTTTCCCCTTTGATTT+GGG + chr2_4:51728554-51728573 Msa0333720:intron 30.0%
TTCAATCAACCCAAATCAAA+GGG - chr2_4:51728566-51728585 None:intergenic 30.0%
TTTCAATCAACCCAAATCAA+AGG - chr2_4:51728567-51728586 None:intergenic 30.0%
GAAAACTACAAGTTATTCCA+TGG - chr2_4:51728653-51728672 None:intergenic 30.0%
GCAAAATTATCTCCATGTTA+AGG + chr2_4:51728920-51728939 Msa0333720:intron 30.0%
TCAAATAAGTCGATCCAAAA+AGG - chr2_4:51728947-51728966 None:intergenic 30.0%
! AAAATCACAAAGGCTCTTTT+AGG - chr2_4:51729214-51729233 None:intergenic 30.0%
ACATAGAGCTAAAATCACAA+AGG - chr2_4:51729224-51729243 None:intergenic 30.0%
!!! TAGACAGTCACTATTTTTTC+AGG + chr2_4:51729414-51729433 Msa0333720:CDS 30.0%
GAAATCTTAATGAGGAAGAA+TGG + chr2_4:51729917-51729936 Msa0333720:CDS 30.0%
AAGAATGGGTAACAGTATAT+GGG + chr2_4:51729932-51729951 Msa0333720:intron 30.0%
ACACTACTATCATTCCTTAT+CGG - chr2_4:51729997-51730016 None:intergenic 30.0%
AAGGATTTGTCCTAGAAATA+TGG + chr2_4:51730039-51730058 Msa0333720:intron 30.0%
TCATACACAATCACATATGT+TGG + chr2_4:51730292-51730311 Msa0333720:intron 30.0%
! AAAACATTTGATTTCAGCAG+AGG + chr2_4:51730395-51730414 Msa0333720:intron 30.0%
! TTGTCTGGAATAATTTGACT+TGG + chr2_4:51730805-51730824 Msa0333720:intron 30.0%
ATTAATCAAAACGACGACAT+TGG - chr2_4:51730987-51731006 None:intergenic 30.0%
ATTTGGATGCTGAAAATTGA+AGG + chr2_4:51731031-51731050 Msa0333720:intron 30.0%
AAAAACACCAGAAAGTAAGA+AGG - chr2_4:51731153-51731172 None:intergenic 30.0%
! GTCTGAGATTTCAAACATTT+CGG + chr2_4:51731212-51731231 Msa0333720:intron 30.0%
!! GTGGTATTGACTTTAAACTT+TGG - chr2_4:51731481-51731500 None:intergenic 30.0%
TTCTTAATGTGTGACATGTT+GGG - chr2_4:51731508-51731527 None:intergenic 30.0%
GAAAACAACATAAAGACAAG+GGG - chr2_4:51731655-51731674 None:intergenic 30.0%
GGAAAACAACATAAAGACAA+GGG - chr2_4:51731656-51731675 None:intergenic 30.0%
AGAAGAGTCTATGATTATGA+TGG + chr2_4:51731790-51731809 Msa0333720:intron 30.0%
! GTTTTCTCAAGTCAAGAATT+GGG - chr2_4:51731944-51731963 None:intergenic 30.0%
! AGTTTTCTCAAGTCAAGAAT+TGG - chr2_4:51731945-51731964 None:intergenic 30.0%
!!! AAGCTATTTTTGAAACCACA+TGG + chr2_4:51732085-51732104 Msa0333720:intron 30.0%
! TGTGTATGCAAGTTATGTTT+TGG + chr2_4:51732328-51732347 Msa0333720:intron 30.0%
!! TTTTGGAGGAAATTTCTAGA+GGG + chr2_4:51732345-51732364 Msa0333720:intron 30.0%
CCTAATAAGATTAAGGAGTA+AGG - chr2_4:51732459-51732478 None:intergenic 30.0%
CCTTACTCCTTAATCTTATT+AGG + chr2_4:51732456-51732475 Msa0333720:intron 30.0%
AAATTTCAAATAGGATGGGA+GGG - chr2_4:51732559-51732578 None:intergenic 30.0%
TAAATTTCAAATAGGATGGG+AGG - chr2_4:51732560-51732579 None:intergenic 30.0%
GTGGAGTTTGTATTGTTAAT+TGG + chr2_4:51732597-51732616 Msa0333720:intron 30.0%
TATTGTTAATTGGGTCATTG+TGG + chr2_4:51732607-51732626 Msa0333720:intron 30.0%
!!! GTTTGGCTTTCCTTATTTTT+AGG + chr2_4:51732719-51732738 Msa0333720:intron 30.0%
GTGCAGAAGTTAAATGTTAT+AGG + chr2_4:51733453-51733472 Msa0333720:intron 30.0%
GACTTAAAAGATTAGGGTTT+AGG + chr2_4:51733495-51733514 Msa0333720:intron 30.0%
AGTTAAAATATTAGAGCTGC+TGG + chr2_4:51733525-51733544 Msa0333720:intron 30.0%
ACTTAATTTATTTCAGCGCA+AGG + chr2_4:51733757-51733776 Msa0333720:intron 30.0%
GATTTAGAAGAAGAATGGTA+AGG + chr2_4:51733874-51733893 Msa0333720:intron 30.0%
GTAATCAACTATCGTAAGTT+CGG - chr2_4:51733918-51733937 None:intergenic 30.0%
ACTTACGATAGTTGATTACT+TGG + chr2_4:51733919-51733938 Msa0333720:intron 30.0%
CTTACGATAGTTGATTACTT+GGG + chr2_4:51733920-51733939 Msa0333720:intron 30.0%
TTACGATAGTTGATTACTTG+GGG + chr2_4:51733921-51733940 Msa0333720:intron 30.0%
AATAAAGTTCAGTAATGGCA+AGG + chr2_4:51734195-51734214 Msa0333720:intron 30.0%
TAAGTTCACTAAATGATCGA+TGG + chr2_4:51734266-51734285 Msa0333720:intron 30.0%
AAATGATCGATGGTTAAGTT+TGG + chr2_4:51734276-51734295 Msa0333720:intron 30.0%
ATTCCTCTTATCAGTATTTC+TGG + chr2_4:51734369-51734388 Msa0333720:CDS 30.0%
TGAAAAACGAAGAGGAGAAT+TGG + chr2_4:51728202-51728221 Msa0333720:five_prime_UTR 35.0%
GAAAAACGAAGAGGAGAATT+GGG + chr2_4:51728203-51728222 Msa0333720:five_prime_UTR 35.0%
AAAAACGAAGAGGAGAATTG+GGG + chr2_4:51728204-51728223 Msa0333720:five_prime_UTR 35.0%
!! TTAATCGGTTCCGTTTTGTA+AGG - chr2_4:51728419-51728438 None:intergenic 35.0%
TACAAAACGGAACCGATTAA+CGG + chr2_4:51728419-51728438 Msa0333720:intron 35.0%
AAAGGAAAAGACCCGTTAAT+CGG - chr2_4:51728434-51728453 None:intergenic 35.0%
TCAATCAACCCAAATCAAAG+GGG - chr2_4:51728565-51728584 None:intergenic 35.0%
! CTGAAAATAGCTTGTGAACA+TGG - chr2_4:51728779-51728798 None:intergenic 35.0%
! GCGTGAAAACTTTGGTAATT+CGG + chr2_4:51729513-51729532 Msa0333720:CDS 35.0%
CTATCTTCCAAGGTGAAAAA+AGG - chr2_4:51729553-51729572 None:intergenic 35.0%
AAAGTCTGATCTATCTTCCA+AGG - chr2_4:51729563-51729582 None:intergenic 35.0%
TTATTGTCTGACTTAGTCTC+AGG - chr2_4:51729622-51729641 None:intergenic 35.0%
! TCTCTATTTGGAGTTTGGAT+GGG - chr2_4:51729649-51729668 None:intergenic 35.0%
! TTCTCTATTTGGAGTTTGGA+TGG - chr2_4:51729650-51729669 None:intergenic 35.0%
GGAGTCGAAAATTCTCTATT+TGG - chr2_4:51729661-51729680 None:intergenic 35.0%
TCTTAAAGCATAAGATGTGC+TGG - chr2_4:51729704-51729723 None:intergenic 35.0%
! AGCACATCTTATGCTTTAAG+AGG + chr2_4:51729703-51729722 Msa0333720:CDS 35.0%
!! GCACATCTTATGCTTTAAGA+GGG + chr2_4:51729704-51729723 Msa0333720:CDS 35.0%
!! CACATCTTATGCTTTAAGAG+GGG + chr2_4:51729705-51729724 Msa0333720:CDS 35.0%
ATTAAGATTTCCTGCAGGTA+AGG - chr2_4:51729908-51729927 None:intergenic 35.0%
GAAGAATGGGTAACAGTATA+TGG + chr2_4:51729931-51729950 Msa0333720:intron 35.0%
AATAAGTTGTGTTGTGCTAC+AGG - chr2_4:51730190-51730209 None:intergenic 35.0%
TCATAGTCGTCTTTACAATC+TGG - chr2_4:51730213-51730232 None:intergenic 35.0%
CATTGTTGCTGTAAACGAAA+TGG + chr2_4:51730600-51730619 Msa0333720:intron 35.0%
! ATTTATTGGAGGCATGAAGA+AGG + chr2_4:51730744-51730763 Msa0333720:intron 35.0%
! TTTATTGGAGGCATGAAGAA+GGG + chr2_4:51730745-51730764 Msa0333720:intron 35.0%
!!! TTCTTCTTGTCGTTTTCTTC+AGG + chr2_4:51730951-51730970 Msa0333720:intron 35.0%
GATGCTGAAAATTGAAGGTT+GGG + chr2_4:51731036-51731055 Msa0333720:intron 35.0%
AATGTCACATGAGCAATGTT+TGG + chr2_4:51731080-51731099 Msa0333720:intron 35.0%
TGAGCAATGTTTGGAGATAT+TGG + chr2_4:51731089-51731108 Msa0333720:intron 35.0%
!! GGATGAGGTTTAAGAGTATT+TGG - chr2_4:51731132-51731151 None:intergenic 35.0%
AGCTATGAAATAGTTGAGCA+TGG + chr2_4:51731188-51731207 Msa0333720:intron 35.0%
TAAGTGCATATCAAAGGTCT+TGG - chr2_4:51731241-51731260 None:intergenic 35.0%
!! ATATGTGAGAGAGTGTCTAA+TGG + chr2_4:51731359-51731378 Msa0333720:intron 35.0%
GTTCTTAATGTGTGACATGT+TGG - chr2_4:51731509-51731528 None:intergenic 35.0%
TCACACATTAAGAACATACG+AGG + chr2_4:51731514-51731533 Msa0333720:intron 35.0%
GGGAAAACAACATAAAGACA+AGG - chr2_4:51731657-51731676 None:intergenic 35.0%
AGACTCTTCTACCTAAAATG+TGG - chr2_4:51731780-51731799 None:intergenic 35.0%
AAGCCATATCTTCTTCTCTT+TGG + chr2_4:51731847-51731866 Msa0333720:intron 35.0%
CATCCAAAGAGAAGAAGATA+TGG - chr2_4:51731853-51731872 None:intergenic 35.0%
AAGTCAAGAATTGGGAGAAA+TGG - chr2_4:51731936-51731955 None:intergenic 35.0%
CAGTTGGTTATTGATACATG+TGG - chr2_4:51731992-51732011 None:intergenic 35.0%
TCAAAAATAGCTTCCGCAAA+AGG - chr2_4:51732078-51732097 None:intergenic 35.0%
ATGATTGGTGAGAGTAAACA+TGG + chr2_4:51732170-51732189 Msa0333720:intron 35.0%
!! GTATGCAAGTTATGTTTTGG+AGG + chr2_4:51732331-51732350 Msa0333720:intron 35.0%
!!! GTTTTGGAGGAAATTTCTAG+AGG + chr2_4:51732344-51732363 Msa0333720:intron 35.0%
!!! TTTTTTCTAGGGTTCTCTCT+TGG + chr2_4:51732866-51732885 Msa0333720:intron 35.0%
CTTGATCAAATCATCACGAA+CGG - chr2_4:51733201-51733220 None:intergenic 35.0%
CTCTTTGGTGAAGTATGATA+CGG - chr2_4:51733296-51733315 None:intergenic 35.0%
TTCTGCACATAAGCATTTAC+TGG - chr2_4:51733441-51733460 None:intergenic 35.0%
CAAAAATGCAACGCCAAATA+CGG - chr2_4:51733552-51733571 None:intergenic 35.0%
TGTCAAAGTGATAGACTTTC+AGG - chr2_4:51733673-51733692 None:intergenic 35.0%
!! AAGCATAAGAGTACTCATGA+GGG + chr2_4:51733997-51734016 Msa0333720:intron 35.0%
ATCTGTCGTGCATCATTTAT+GGG + chr2_4:51734218-51734237 Msa0333720:intron 35.0%
TGATAAGAGGAATCCTTGAA+TGG - chr2_4:51734362-51734381 None:intergenic 35.0%
CTTCCAGAAATACTGATAAG+AGG - chr2_4:51734375-51734394 None:intergenic 35.0%
TTTCAGTGAGAAGAGAACGT+TGG - chr2_4:51728181-51728200 None:intergenic 40.0%
!!! GGAGAATTGGGGTTTTGAAT+CGG + chr2_4:51728215-51728234 Msa0333720:five_prime_UTR 40.0%
!!! GAGAATTGGGGTTTTGAATC+GGG + chr2_4:51728216-51728235 Msa0333720:five_prime_UTR 40.0%
ACAAAACGGAACCGATTAAC+GGG + chr2_4:51728420-51728439 Msa0333720:intron 40.0%
CTGTGTTACAGAATCTCTCA+TGG + chr2_4:51728512-51728531 Msa0333720:intron 40.0%
TGTTACAGAATCTCTCATGG+TGG + chr2_4:51728515-51728534 Msa0333720:intron 40.0%
ATGTTCTAGTATTCAGCCCA+TGG + chr2_4:51728633-51728652 Msa0333720:intron 40.0%
TAAGCACTTCTGACACTGTT+TGG + chr2_4:51728729-51728748 Msa0333720:intron 40.0%
AAGCACTTCTGACACTGTTT+GGG + chr2_4:51728730-51728749 Msa0333720:intron 40.0%
ATCCAAAAAGGCCCTTAACA+TGG - chr2_4:51728935-51728954 None:intergenic 40.0%
!! TATTCACTTGTGAGAGTGCT+TGG + chr2_4:51728982-51729001 Msa0333720:intron 40.0%
!! ATTCACTTGTGAGAGTGCTT+GGG + chr2_4:51728983-51729002 Msa0333720:intron 40.0%
AAGTTATCCTGGTCAGCTTA+TGG - chr2_4:51729062-51729081 None:intergenic 40.0%
GCGATTGTCATAAGTTATCC+TGG - chr2_4:51729073-51729092 None:intergenic 40.0%
TCTCTATGGCGTGAAAACTT+TGG + chr2_4:51729505-51729524 Msa0333720:CDS 40.0%
TCTTCCAAGGTGAAAAAAGG+AGG - chr2_4:51729550-51729569 None:intergenic 40.0%
! TCAGACTTTTCTCCAGAATC+AGG + chr2_4:51729574-51729593 Msa0333720:CDS 40.0%
TAATCCAGTATGCCTGATTC+TGG - chr2_4:51729589-51729608 None:intergenic 40.0%
ACTTAGTCTCAGGAGACATT+TGG - chr2_4:51729612-51729631 None:intergenic 40.0%
! AAGGCTCGCTTAGTTTGAAT+TGG + chr2_4:51729743-51729762 Msa0333720:CDS 40.0%
TGAACAAGAGGAGAAAGGAA+GGG + chr2_4:51729792-51729811 Msa0333720:CDS 40.0%
ACCTGCAGGAAATCTTAATG+AGG + chr2_4:51729909-51729928 Msa0333720:CDS 40.0%
TCCTCATTAAGATTTCCTGC+AGG - chr2_4:51729913-51729932 None:intergenic 40.0%
TGTTGTGCTACAGGAAACAT+GGG - chr2_4:51730181-51730200 None:intergenic 40.0%
ACACAATCACATATGTTGGC+AGG + chr2_4:51730296-51730315 Msa0333720:intron 40.0%
CACAATCACATATGTTGGCA+GGG + chr2_4:51730297-51730316 Msa0333720:intron 40.0%
CAAACTAGAAACACAGACAG+AGG + chr2_4:51730883-51730902 Msa0333720:intron 40.0%
GGATGCTGAAAATTGAAGGT+TGG + chr2_4:51731035-51731054 Msa0333720:intron 40.0%
ACCTCATCCTTCTTACTTTC+TGG + chr2_4:51731143-51731162 Msa0333720:intron 40.0%
ACCAGAAAGTAAGAAGGATG+AGG - chr2_4:51731147-51731166 None:intergenic 40.0%
TGACAGAAAGAGCAATGCTA+AGG - chr2_4:51731404-51731423 None:intergenic 40.0%
TGAAGAAGAAAGATGTGGTC+GGG - chr2_4:51731677-51731696 None:intergenic 40.0%
CTGAAGAAGAAAGATGTGGT+CGG - chr2_4:51731678-51731697 None:intergenic 40.0%
GAAGCTGAAGAAGAAAGATG+TGG - chr2_4:51731682-51731701 None:intergenic 40.0%
GTTATAAACAAAGCTCACGG+TGG - chr2_4:51731730-51731749 None:intergenic 40.0%
GTGAGGAAGAAGGAAATCTT+TGG - chr2_4:51731910-51731929 None:intergenic 40.0%
GAAATGGATAGTGAGGAAGA+AGG - chr2_4:51731920-51731939 None:intergenic 40.0%
ATTGGGAGAAATGGATAGTG+AGG - chr2_4:51731927-51731946 None:intergenic 40.0%
TCGCAAAGGAAATTAGCAGT+TGG - chr2_4:51732008-51732027 None:intergenic 40.0%
TATTGATCAAGCAATGAGGC+TGG - chr2_4:51732043-51732062 None:intergenic 40.0%
TGTTGTACCATGTGAGACAA+AGG - chr2_4:51732290-51732309 None:intergenic 40.0%
GGATGGGAGGGAAAAATTTA+GGG - chr2_4:51732547-51732566 None:intergenic 40.0%
AGGATGGGAGGGAAAAATTT+AGG - chr2_4:51732548-51732567 None:intergenic 40.0%
! ATTGGGTCATTGTGGCTTTA+TGG + chr2_4:51732615-51732634 Msa0333720:intron 40.0%
! ACGGTCTTTTTGTTCTTCAG+AGG + chr2_4:51732798-51732817 Msa0333720:intron 40.0%
TTGGTGAAGTATGATACGGA+AGG - chr2_4:51733292-51733311 None:intergenic 40.0%
! AAGGGAGTATGGAATGGAAA+TGG + chr2_4:51733802-51733821 Msa0333720:CDS 40.0%
GGATCACGAAGCATAACAAA+GGG - chr2_4:51733830-51733849 None:intergenic 40.0%
TGGATCACGAAGCATAACAA+AGG - chr2_4:51733831-51733850 None:intergenic 40.0%
!! CAAGCATAAGAGTACTCATG+AGG + chr2_4:51733996-51734015 Msa0333720:intron 40.0%
AGCAAGCTATCTAGATAGCT+TGG - chr2_4:51734148-51734167 None:intergenic 40.0%
GATCTGTCGTGCATCATTTA+TGG + chr2_4:51734217-51734236 Msa0333720:intron 40.0%
!! GATGGTTAAGTTTGGTGTGA+CGG + chr2_4:51734284-51734303 Msa0333720:intron 40.0%
!! TGATGTTGGTTCTCCATTCA+AGG + chr2_4:51734346-51734365 Msa0333720:CDS 40.0%
!!! AATTGGGGTTTTGAATCGGG+AGG + chr2_4:51728219-51728238 Msa0333720:five_prime_UTR 45.0%
!!! ATTGGGGTTTTGAATCGGGA+GGG + chr2_4:51728220-51728239 Msa0333720:five_prime_UTR 45.0%
! TGGTGGCGAATTGAAGTGAA+GGG - chr2_4:51728294-51728313 None:intergenic 45.0%
! CTCCATGTTAAGGGCCTTTT+TGG + chr2_4:51728930-51728949 Msa0333720:intron 45.0%
!! TTCACTTGTGAGAGTGCTTG+GGG + chr2_4:51728984-51729003 Msa0333720:intron 45.0%
CGTATTTCCATAAGCTGACC+AGG + chr2_4:51729052-51729071 Msa0333720:intron 45.0%
CTACTTATTGCTCACCACTG+AGG + chr2_4:51729249-51729268 Msa0333720:intron 45.0%
! TTGGACTGGAAAACTTTCCC+CGG - chr2_4:51729465-51729484 None:intergenic 45.0%
!! CAGGAGCATCTTCTTCTCTA+TGG + chr2_4:51729491-51729510 Msa0333720:CDS 45.0%
TCCAAGGTGAAAAAAGGAGG+CGG - chr2_4:51729547-51729566 None:intergenic 45.0%
TTCTCCAGAATCAGGCATAC+TGG + chr2_4:51729582-51729601 Msa0333720:CDS 45.0%
! GAATTTTCGACTCCAGCGAA+AGG + chr2_4:51729667-51729686 Msa0333720:CDS 45.0%
!! AGCATAAGATGTGCTGGCTT+CGG - chr2_4:51729698-51729717 None:intergenic 45.0%
! TCAAACTAAGCGAGCCTTGT+TGG - chr2_4:51729741-51729760 None:intergenic 45.0%
! GCTCGCTTAGTTTGAATTGG+TGG + chr2_4:51729746-51729765 Msa0333720:CDS 45.0%
! AAAGAGTGGTGGTGAACAAG+AGG + chr2_4:51729780-51729799 Msa0333720:CDS 45.0%
GTGAACAAGAGGAGAAAGGA+AGG + chr2_4:51729791-51729810 Msa0333720:CDS 45.0%
GAACAAGAGGAGAAAGGAAG+GGG + chr2_4:51729793-51729812 Msa0333720:CDS 45.0%
GGAAGAGTAATCAATGCACC+AGG - chr2_4:51729844-51729863 None:intergenic 45.0%
AAGGAATTTCGCTGGACTTC+AGG - chr2_4:51729889-51729908 None:intergenic 45.0%
GTGTTGTGCTACAGGAAACA+TGG - chr2_4:51730182-51730201 None:intergenic 45.0%
AAAGTGTATTGTGTGCCACG+TGG + chr2_4:51731332-51731351 Msa0333720:intron 45.0%
GTGTGACATGTTGGGTTTAG+TGG - chr2_4:51731500-51731519 None:intergenic 45.0%
TGGCAGAAAACACACGTCAT+TGG + chr2_4:51731566-51731585 Msa0333720:intron 45.0%
GGCAGAAAACACACGTCATT+GGG + chr2_4:51731567-51731586 Msa0333720:intron 45.0%
!! TCGTTGGTTCATGATCCATG+TGG - chr2_4:51732103-51732122 None:intergenic 45.0%
TGTGACTCCTTTGTCTCACA+TGG + chr2_4:51732280-51732299 Msa0333720:intron 45.0%
ATACTCCCTTGAGAAGCAAG+CGG - chr2_4:51733792-51733811 None:intergenic 45.0%
! CTTCTCAAGGGAGTATGGAA+TGG + chr2_4:51733796-51733815 Msa0333720:CDS 45.0%
CTCATGAGGGAGATACTCAA+AGG + chr2_4:51734010-51734029 Msa0333720:intron 45.0%
CGTGCATCATTTATGGGCAA+TGG + chr2_4:51734224-51734243 Msa0333720:intron 45.0%
! TGACGGATGCTGCAAATCAT+AGG + chr2_4:51734301-51734320 Msa0333720:intron 45.0%
! TATACTTCCGGCTCTGATGT+TGG + chr2_4:51734332-51734351 Msa0333720:CDS 45.0%
!!! AATTTAGTTTAATTTTTATA+TGG - chr2_4:51728122-51728141 None:intergenic 5.0%
!!! ATATTTGTTAATTTTTTTTT+GGG - chr2_4:51732430-51732449 None:intergenic 5.0%
!!! TATATTTGTTAATTTTTTTT+TGG - chr2_4:51732431-51732450 None:intergenic 5.0%
! GTGGTGGCGAATTGAAGTGA+AGG - chr2_4:51728295-51728314 None:intergenic 50.0%
!! AGAGAAGTACCTGGTAGTGG+TGG - chr2_4:51728314-51728333 None:intergenic 50.0%
!! GAGAGAGAAGTACCTGGTAG+TGG - chr2_4:51728317-51728336 None:intergenic 50.0%
!! AGAGAGGAGAGAGAAGTACC+TGG - chr2_4:51728323-51728342 None:intergenic 50.0%
ACGGTGCAGTATAGAGAGAG+AGG - chr2_4:51728339-51728358 None:intergenic 50.0%
!! TCACTTGTGAGAGTGCTTGG+GGG + chr2_4:51728985-51729004 Msa0333720:intron 50.0%
AGTGACTGTCTACCAGACCT+AGG - chr2_4:51729406-51729425 None:intergenic 50.0%
! TTTTCCAGTCCAAGCCAGTC+AGG + chr2_4:51729472-51729491 Msa0333720:CDS 50.0%
GAGAAGAAGATGCTCCTGAC+TGG - chr2_4:51729489-51729508 None:intergenic 50.0%
TGAAAAAAGGAGGCGGAGGA+AGG - chr2_4:51729540-51729559 None:intergenic 50.0%
AAGGTGAAAAAAGGAGGCGG+AGG - chr2_4:51729544-51729563 None:intergenic 50.0%
!!! TCCGCCTCCTTTTTTCACCT+TGG + chr2_4:51729543-51729562 Msa0333720:CDS 50.0%
TGTTCACCACCACTCTTTGC+AGG - chr2_4:51729778-51729797 None:intergenic 50.0%
GGTGGTGAACAAGAGGAGAA+AGG + chr2_4:51729787-51729806 Msa0333720:CDS 50.0%
CTGCAGGTAAGGAATTTCGC+TGG - chr2_4:51729897-51729916 None:intergenic 50.0%
CAGCGAAATTCCTTACCTGC+AGG + chr2_4:51729895-51729914 Msa0333720:CDS 50.0%
CTCTCACATATTGTGCCACG+TGG - chr2_4:51731350-51731369 None:intergenic 50.0%
TGATCAAGCAATGAGGCTGG+TGG - chr2_4:51732040-51732059 None:intergenic 50.0%
AGCAGAGGCAACAAAGTCGT+TGG - chr2_4:51732119-51732138 None:intergenic 50.0%
AACGACTTTGTTGCCTCTGC+TGG + chr2_4:51732118-51732137 Msa0333720:intron 50.0%
TGTGCATTCAAGTCCAGCAG+AGG - chr2_4:51732134-51732153 None:intergenic 50.0%
TAGAGCTGCTGGTCCGTATT+TGG + chr2_4:51733536-51733555 Msa0333720:intron 50.0%
TACTCCCTTGAGAAGCAAGC+GGG - chr2_4:51733791-51733810 None:intergenic 50.0%
GCTTGCTTCTCAAGGGAGTA+TGG + chr2_4:51733791-51733810 Msa0333720:CDS 50.0%
TGGAGAACCAACATCAGAGC+CGG - chr2_4:51734342-51734361 None:intergenic 50.0%
AATTCGCCACCACCACTACC+AGG + chr2_4:51728302-51728321 Msa0333720:five_prime_UTR 55.0%
!! GAAGTACCTGGTAGTGGTGG+TGG - chr2_4:51728311-51728330 None:intergenic 55.0%
! GAGCTGAGAGCATACCTCAG+TGG - chr2_4:51729266-51729285 None:intergenic 55.0%
CCTAGGAGTTCTTTGCGCTG+TGG - chr2_4:51729389-51729408 None:intergenic 55.0%
CCACAGCGCAAAGAACTCCT+AGG + chr2_4:51729386-51729405 Msa0333720:CDS 55.0%
GCGCAAAGAACTCCTAGGTC+TGG + chr2_4:51729391-51729410 Msa0333720:CDS 55.0%
ACTGGAAAACTTTCCCCGGC+GGG - chr2_4:51729461-51729480 None:intergenic 55.0%
GACTGGAAAACTTTCCCCGG+CGG - chr2_4:51729462-51729481 None:intergenic 55.0%
! GAAGATGCTCCTGACTGGCT+TGG - chr2_4:51729484-51729503 None:intergenic 55.0%
GGGGTGCAGCAAAACCAACA+AGG + chr2_4:51729724-51729743 Msa0333720:CDS 55.0%
TGGTCGTCACCTGCAAAGAG+TGG + chr2_4:51729766-51729785 Msa0333720:CDS 55.0%
TCGTCACCTGCAAAGAGTGG+TGG + chr2_4:51729769-51729788 Msa0333720:CDS 55.0%
TCTTCCTCCACCACCAGAAG+TGG + chr2_4:51729858-51729877 Msa0333720:CDS 55.0%
! ACTTCAGGCCTTGCCACTTC+TGG - chr2_4:51729874-51729893 None:intergenic 55.0%
GGTGGCAATGGCTTTCGCAA+AGG - chr2_4:51732022-51732041 None:intergenic 55.0%
AGCAATGAGGCTGGTGGCAA+TGG - chr2_4:51732034-51732053 None:intergenic 55.0%
AGCTACCCGCTTGCTTCTCA+AGG + chr2_4:51733783-51733802 Msa0333720:CDS 55.0%
GCTACCCGCTTGCTTCTCAA+GGG + chr2_4:51733784-51733803 Msa0333720:CDS 55.0%
CATCCCCTGTTAATGCCCGC+CGG + chr2_4:51729443-51729462 Msa0333720:CDS 60.0%
ATCCCCTGTTAATGCCCGCC+GGG + chr2_4:51729444-51729463 Msa0333720:CDS 60.0%
TTCCCCGGCGGGCATTAACA+GGG - chr2_4:51729450-51729469 None:intergenic 60.0%
TTTCCCCGGCGGGCATTAAC+AGG - chr2_4:51729451-51729470 None:intergenic 60.0%
!! TGCTCCTGACTGGCTTGGAC+TGG - chr2_4:51729479-51729498 None:intergenic 60.0%
GCTTCGGACTTGCCTTTCGC+TGG - chr2_4:51729682-51729701 None:intergenic 60.0%
AGGAAGGGGTTCTCCAGTCG+AGG + chr2_4:51729807-51729826 Msa0333720:CDS 60.0%
GGAAGGGGTTCTCCAGTCGA+GGG + chr2_4:51729808-51729827 Msa0333720:CDS 60.0%
!! CTTGCCACTTCTGGTGGTGG+AGG - chr2_4:51729865-51729884 None:intergenic 60.0%
CTCCACCACCAGAAGTGGCA+AGG + chr2_4:51729863-51729882 Msa0333720:CDS 60.0%
! TCAGGCCTTGCCACTTCTGG+TGG - chr2_4:51729871-51729890 None:intergenic 60.0%
TCCCCTGTTAATGCCCGCCG+GGG + chr2_4:51729445-51729464 Msa0333720:CDS 65.0%
TCCCCGGCGGGCATTAACAG+GGG - chr2_4:51729449-51729468 None:intergenic 65.0%
GGGTTCTCCAGTCGAGGGTG+TGG + chr2_4:51729813-51729832 Msa0333720:CDS 65.0%
GGCTGAACCACACCCTCGAC+TGG - chr2_4:51729823-51729842 None:intergenic 65.0%
! GTCGAGGGTGTGGTTCAGCC+TGG + chr2_4:51729823-51729842 Msa0333720:CDS 65.0%
! GGCCTTGCCACTTCTGGTGG+TGG - chr2_4:51729868-51729887 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 51728066 51734400 51728066 ID=Msa0333720;Name=Msa0333720
chr2_4 mRNA 51728066 51734400 51728066 ID=Msa0333720-mRNA-1;Parent=Msa0333720;Name=Msa0333720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=296|0.33|0.25|0.75|0.66|0.5|4|0|244
chr2_4 exon 51728066 51728323 51728066 ID=Msa0333720-mRNA-1:exon:15484;Parent=Msa0333720-mRNA-1
chr2_4 exon 51729341 51729939 51729341 ID=Msa0333720-mRNA-1:exon:15485;Parent=Msa0333720-mRNA-1
chr2_4 exon 51733773 51733868 51733773 ID=Msa0333720-mRNA-1:exon:15486;Parent=Msa0333720-mRNA-1
chr2_4 exon 51734323 51734400 51734323 ID=Msa0333720-mRNA-1:exon:15487;Parent=Msa0333720-mRNA-1
chr2_4 five_prime_UTR 51728066 51728323 51728066 ID=Msa0333720-mRNA-1:five_prime_utr;Parent=Msa0333720-mRNA-1
chr2_4 five_prime_UTR 51729341 51729378 51729341 ID=Msa0333720-mRNA-1:five_prime_utr;Parent=Msa0333720-mRNA-1
chr2_4 CDS 51729379 51729939 51729379 ID=Msa0333720-mRNA-1:cds;Parent=Msa0333720-mRNA-1
chr2_4 CDS 51733773 51733868 51733773 ID=Msa0333720-mRNA-1:cds;Parent=Msa0333720-mRNA-1
chr2_4 CDS 51734323 51734400 51734323 ID=Msa0333720-mRNA-1:cds;Parent=Msa0333720-mRNA-1
Gene Sequence

>Msa0333720

ATGAGCACCACAGCGCAAAGAACTCCTAGGTCTGGTAGACAGTCACTATTTTTTCAGGATTTAGCATCCCCTGTTAATGCCCGCCGGGGAAAGTTTTCCAGTCCAAGCCAGTCAGGAGCATCTTCTTCTCTATGGCGTGAAAACTTTGGTAATTCGGACCTTCCTCCGCCTCCTTTTTTCACCTTGGAAGATAGATCAGACTTTTCTCCAGAATCAGGCATACTGGATTACCAAATGTCTCCTGAGACTAAGTCAGACAATAAAACTCCCATCCAAACTCCAAATAGAGAATTTTCGACTCCAGCGAAAGGCAAGTCCGAAGCCAGCACATCTTATGCTTTAAGAGGGGTGCAGCAAAACCAACAAGGCTCGCTTAGTTTGAATTGGTGGTCGTCACCTGCAAAGAGTGGTGGTGAACAAGAGGAGAAAGGAAGGGGTTCTCCAGTCGAGGGTGTGGTTCAGCCTGGTGCATTGATTACTCTTCCTCCACCACCAGAAGTGGCAAGGCCTGAAGTCCAGCGAAATTCCTTACCTGCAGGAAATCTTAATGAGGAAGAATGGCGCAAGGCAAAGCTACCCGCTTGCTTCTCAAGGGAGTATGGAATGGAAATGGCTCCCTTTGTTATGCTTCGTGATCCAAACAAGAATAAATTCAAGGATCATTTTTATACTTCCGGCTCTGATGTTGGTTCTCCATTCAAGGATTCCTCTTATCAGTATTTCTGGAAGAATTAG

Protein sequence

>Msa0333720

MSTTAQRTPRSGRQSLFFQDLASPVNARRGKFSSPSQSGASSSLWRENFGNSDLPPPPFFTLEDRSDFSPESGILDYQMSPETKSDNKTPIQTPNREFSTPAKGKSEASTSYALRGVQQNQQGSLSLNWWSSPAKSGGEQEEKGRGSPVEGVVQPGALITLPPPPEVARPEVQRNSLPAGNLNEEEWRKAKLPACFSREYGMEMAPFVMLRDPNKNKFKDHFYTSGSDVGSPFKDSSYQYFWKN*