Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454710 | sp|O81852|AKH2_ARATH | 69.266 | 885 | 189 | 9 | 44 | 847 | 34 | 916 | 0.0 | 1201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454710 | A0A072V1J2 | 98.387 | 682 | 11 | 0 | 166 | 847 | 5 | 686 | 0.0 | 1384 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0467560 | Msa1454710 | 0.857043 | 2.134995e-62 | -8.615850e-47 |
| Msa0514450 | Msa1454710 | 0.831927 | 1.264851e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454710 | MtrunA17_Chr3g0121961 | 98.387 | 682 | 11 | 0 | 166 | 847 | 225 | 906 | 0.0 | 1383 |
| Msa1454710 | MtrunA17_Chr3g0121961 | 94.083 | 169 | 7 | 3 | 1 | 168 | 1 | 167 | 1.38e-95 | 319 |
| Msa1454710 | MtrunA17_Chr8g0377971 | 76.201 | 874 | 148 | 3 | 34 | 847 | 43 | 916 | 0.0 | 1353 |
| Msa1454710 | MtrunA17_Chr3g0118521 | 34.759 | 374 | 213 | 10 | 488 | 837 | 3 | 369 | 6.71e-53 | 189 |
| Msa1454710 | MtrunA17_Chr7g0252051 | 25.577 | 477 | 263 | 11 | 80 | 485 | 81 | 536 | 3.97e-38 | 150 |
| Msa1454710 | MtrunA17_Chr6g0461951 | 25.523 | 478 | 264 | 11 | 80 | 486 | 83 | 539 | 3.02e-36 | 144 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1454710 | AT4G19710.2 | 69.266 | 885 | 189 | 9 | 44 | 847 | 34 | 916 | 0.0 | 1201 |
| Msa1454710 | AT1G31230.1 | 69.732 | 859 | 196 | 6 | 49 | 847 | 57 | 911 | 0.0 | 1181 |
| Msa1454710 | AT4G19710.1 | 67.329 | 805 | 180 | 9 | 44 | 767 | 34 | 836 | 0.0 | 1053 |
| Msa1454710 | AT5G21060.3 | 34.584 | 373 | 211 | 10 | 493 | 839 | 8 | 373 | 2.23e-53 | 190 |
| Msa1454710 | AT5G21060.2 | 34.584 | 373 | 211 | 10 | 493 | 839 | 8 | 373 | 2.72e-53 | 190 |
| Msa1454710 | AT5G21060.1 | 34.133 | 375 | 208 | 11 | 493 | 839 | 8 | 371 | 4.87e-53 | 189 |
| Msa1454710 | AT5G13280.1 | 26.606 | 545 | 291 | 15 | 19 | 485 | 31 | 544 | 3.24e-36 | 145 |
| Msa1454710 | AT3G02020.1 | 25.974 | 539 | 303 | 14 | 38 | 502 | 42 | 558 | 1.26e-35 | 143 |
| Msa1454710 | AT5G14060.1 | 25.826 | 484 | 263 | 13 | 76 | 485 | 81 | 542 | 2.26e-34 | 139 |
| Msa1454710 | AT5G14060.2 | 25.826 | 484 | 263 | 13 | 76 | 485 | 81 | 542 | 2.26e-34 | 139 |
| Msa1454710 | AT5G14060.3 | 26.882 | 372 | 199 | 9 | 76 | 385 | 81 | 441 | 1.48e-26 | 114 |
Find 186 sgRNAs with CRISPR-Local
Find 445 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATCGGTTCTTACTCTTAA+TGG | 0.142845 | tig0035382:-16359 | None:intergenic |
| GAAAACTCCTCGTCAAATTT+TGG | 0.147615 | tig0035382:-16491 | None:intergenic |
| ATAATTGGACCTGGATTAAT+TGG | 0.182484 | tig0035382:+14099 | Msa1454710:CDS |
| CAATTATGGGCGCGATATTC+AGG | 0.184677 | tig0035382:+12236 | Msa1454710:CDS |
| CATCTTGTGCAGTCTTATTT+TGG | 0.195740 | tig0035382:+12670 | Msa1454710:intron |
| TGACTTCTCTGCAGCAATTA+TGG | 0.206581 | tig0035382:+12222 | Msa1454710:CDS |
| AAAATATTCCTTATTATAAT+TGG | 0.206918 | tig0035382:-12745 | None:intergenic |
| ACCATGGCAATGGGCATAAT+TGG | 0.214004 | tig0035382:+14084 | Msa1454710:CDS |
| CATTTCAAATTGCAGTATTT+TGG | 0.217640 | tig0035382:+13495 | Msa1454710:CDS |
| AAGATACACTCTTCACTTAC+AGG | 0.239554 | tig0035382:+9794 | Msa1454710:CDS |
| ACATGGTCAGTTCACAAATT+TGG | 0.240332 | tig0035382:+9967 | Msa1454710:CDS |
| CATCCATTTGCACAATTATC+TGG | 0.246596 | tig0035382:+16725 | Msa1454710:CDS |
| TTTGACAGCGCTTTGTTTGC+TGG | 0.257116 | tig0035382:+13298 | Msa1454710:CDS |
| TTCCCATTATTGGCACTTTA+CGG | 0.257376 | tig0035382:+15488 | Msa1454710:CDS |
| CCCTATGCTTCTAGTATTTG+AGG | 0.258311 | tig0035382:+15401 | Msa1454710:intron |
| GGAGCCGGTCTTCCCATTAT+TGG | 0.267035 | tig0035382:+15478 | Msa1454710:CDS |
| GGCAGCTGTTGGCCAGAAAA+TGG | 0.279914 | tig0035382:+13516 | Msa1454710:CDS |
| ACTGACCATGTTTCTCCTTT+TGG | 0.282626 | tig0035382:-9955 | None:intergenic |
| ATAATTCTTGCAAGGGAATC+TGG | 0.292875 | tig0035382:+16287 | Msa1454710:CDS |
| ACTGGAATGGCTGGTGTTCC+AGG | 0.296123 | tig0035382:+13036 | Msa1454710:CDS |
| AACATTGATTTGCGTGTAAT+GGG | 0.300206 | tig0035382:+14367 | Msa1454710:CDS |
| CTGAACAAAGACTTAATAAA+TGG | 0.300282 | tig0035382:+12107 | Msa1454710:CDS |
| TCCCATTATTGGCACTTTAC+GGG | 0.305246 | tig0035382:+15489 | Msa1454710:CDS |
| AAAAGGTGAAGCGGCTGATT+TGG | 0.310156 | tig0035382:+14936 | Msa1454710:CDS |
| GCTAGACCTTTCTGATATTC+CGG | 0.325511 | tig0035382:+16316 | Msa1454710:CDS |
| ATGGCATACCAATTATAATA+AGG | 0.331452 | tig0035382:+12737 | Msa1454710:CDS |
| TTACGACTTGCCTCGTATCT+TGG | 0.336666 | tig0035382:+16860 | Msa1454710:CDS |
| TGCAAATTGAAGGCATCTTC+AGG | 0.337279 | tig0035382:+15539 | Msa1454710:CDS |
| TGGAAAATGTGGACGGGAAA+TGG | 0.341140 | tig0035382:-9550 | None:intergenic |
| TGTTCAGTTTCCAAGTAATC+AGG | 0.346596 | tig0035382:-12091 | None:intergenic |
| TCTTAGTGTAACATTAGTTC+TGG | 0.347448 | tig0035382:+16953 | Msa1454710:three_prime_UTR |
| GACTTCTCTGCAGCAATTAT+GGG | 0.347805 | tig0035382:+12223 | Msa1454710:CDS |
| GAAGAGTGTATCTTGATTCT+TGG | 0.348004 | tig0035382:-9785 | None:intergenic |
| GTTCTTACTCTTAATGGTTC+CGG | 0.356717 | tig0035382:-16353 | None:intergenic |
| GCCCCGTAAAGTGCCAATAA+TGG | 0.358952 | tig0035382:-15491 | None:intergenic |
| TTGGCACTTGTAAATGTAGA+AGG | 0.362262 | tig0035382:+12874 | Msa1454710:CDS |
| TAAGCGAGAGGATTCTATAA+AGG | 0.363103 | tig0035382:+14020 | Msa1454710:CDS |
| AAACATTGATTTGCGTGTAA+TGG | 0.370904 | tig0035382:+14366 | Msa1454710:CDS |
| GTTTGCTGGGCGTATTTCTC+AGG | 0.372575 | tig0035382:+13312 | Msa1454710:CDS |
| GTACTCTCTTAATCCATCTA+AGG | 0.379996 | tig0035382:+12129 | Msa1454710:CDS |
| TTACGGGGCCTTCTCGAAAC+TGG | 0.387949 | tig0035382:+15505 | Msa1454710:CDS |
| TCATCACAAAGATTATATTA+TGG | 0.390808 | tig0035382:-17090 | None:intergenic |
| AAGAAAGGGATCAAATTAGA+TGG | 0.403070 | tig0035382:-16931 | None:intergenic |
| TTACATCTTTAATAACTTCA+AGG | 0.405718 | tig0035382:+15792 | Msa1454710:CDS |
| TCAAGTTGATCCTGATTACT+TGG | 0.406704 | tig0035382:+12081 | Msa1454710:CDS |
| TTGACAGCGCTTTGTTTGCT+GGG | 0.407848 | tig0035382:+13299 | Msa1454710:CDS |
| AAAAGGGTGGCGCTAACTCC+TGG | 0.409823 | tig0035382:-13547 | None:intergenic |
| GTGACTTGTGCACCAGCTCC+TGG | 0.411867 | tig0035382:-16812 | None:intergenic |
| CCCCGTAAAGTGCCAATAAT+GGG | 0.412176 | tig0035382:-15490 | None:intergenic |
| TGATGATTCTGAGAGAAAAT+TGG | 0.414922 | tig0035382:+10047 | Msa1454710:CDS |
| CTCACTCACTCACTGCCAAA+TGG | 0.418444 | tig0035382:+9473 | Msa1454710:exon |
| GTAGCAATGACTACCTTAGA+TGG | 0.420146 | tig0035382:-12142 | None:intergenic |
| AGAGAAATTCGAGAGGAAAA+AGG | 0.432621 | tig0035382:+14919 | Msa1454710:CDS |
| ACGGCACAAGAATTGTTTGA+TGG | 0.436063 | tig0035382:+10189 | Msa1454710:CDS |
| TGGATCACATTCACATTCAC+GGG | 0.441993 | tig0035382:-9513 | None:intergenic |
| CAAGAAGAGGCTGACACTGC+TGG | 0.444680 | tig0035382:+16521 | Msa1454710:CDS |
| CTTTGTGATGATATATATCT+TGG | 0.444767 | tig0035382:+17102 | Msa1454710:three_prime_UTR |
| GGTTTGTGAGTTATAAAATC+TGG | 0.444825 | tig0035382:-14061 | None:intergenic |
| TGAAGAGAAGCATAGCTTAA+CGG | 0.451830 | tig0035382:+10170 | Msa1454710:CDS |
| GGGCTCGTCAAGTCACCATC+TGG | 0.454539 | tig0035382:+12257 | Msa1454710:CDS |
| CAGAAAATGGCAAGTACTCC+AGG | 0.457783 | tig0035382:+13529 | Msa1454710:CDS |
| CAGTCTACTAAAACCGTGTT+TGG | 0.459411 | tig0035382:-14997 | None:intergenic |
| CATCCACAAGGCTGAAGCTC+AGG | 0.460872 | tig0035382:+10116 | Msa1454710:CDS |
| AAAAGCAAAACAAAACCATT+TGG | 0.461534 | tig0035382:-9488 | None:intergenic |
| GACAGATCATCCCTTGGATC+TGG | 0.468935 | tig0035382:-15871 | None:intergenic |
| ATCATAATGGCTTGCTATGA+CGG | 0.470144 | tig0035382:-15031 | None:intergenic |
| TGCGCAACCAGTCATCATAA+TGG | 0.471009 | tig0035382:-15044 | None:intergenic |
| GAGCCAGATAATTGTGCAAA+TGG | 0.471377 | tig0035382:-16728 | None:intergenic |
| GGTATGCCATAGCGAATAAC+CGG | 0.477121 | tig0035382:-12724 | None:intergenic |
| CCCATTATTGGCACTTTACG+GGG | 0.477220 | tig0035382:+15490 | Msa1454710:CDS |
| CCTGAGCCAATGCATTGAAA+AGG | 0.477917 | tig0035382:-13564 | None:intergenic |
| TCTAAGGTAGTCATTGCTAC+TGG | 0.479941 | tig0035382:+12145 | Msa1454710:CDS |
| CAATGTTATTATGATATCTC+AGG | 0.481310 | tig0035382:+13101 | Msa1454710:CDS |
| TCACAAACCACCATGGCAAT+GGG | 0.486399 | tig0035382:+14075 | Msa1454710:CDS |
| AATCTTCTTCACATTCCCTC+AGG | 0.486767 | tig0035382:+9595 | Msa1454710:CDS |
| TTTAGCGCAGTAAAAGAGGT+TGG | 0.488466 | tig0035382:+13075 | Msa1454710:CDS |
| GACAAAATATTGCAAATTGA+AGG | 0.491595 | tig0035382:+15529 | Msa1454710:CDS |
| GTGGATCACATTCACATTCA+CGG | 0.493781 | tig0035382:-9514 | None:intergenic |
| TTTGCGTGTAATGGGGATCA+TGG | 0.494518 | tig0035382:+14375 | Msa1454710:CDS |
| TAATGTTACACTAAGAAGAA+AGG | 0.494640 | tig0035382:-16946 | None:intergenic |
| ATCTTTAATAACTTCAAGGA+TGG | 0.496607 | tig0035382:+15796 | Msa1454710:CDS |
| GGTAGACGTAACGAATCAAA+AGG | 0.497790 | tig0035382:+16670 | Msa1454710:CDS |
| AAAATAGTACTGGCGGTACC+TGG | 0.498155 | tig0035382:-13054 | None:intergenic |
| GGGAAATGGAGAAGAAAGAT+TGG | 0.498379 | tig0035382:-9536 | None:intergenic |
| AATGTTACACTAAGAAGAAA+GGG | 0.498554 | tig0035382:-16945 | None:intergenic |
| GGATTCTATAAAGGCTCTGC+GGG | 0.501469 | tig0035382:+14029 | Msa1454710:CDS |
| AATAGAAGGATAGCAGATCT+TGG | 0.503861 | tig0035382:-12788 | None:intergenic |
| TATCCTGAGCTTCAGCCTTG+TGG | 0.505692 | tig0035382:-10119 | None:intergenic |
| ACCATCTGGACCGACGTTGA+TGG | 0.507631 | tig0035382:+12271 | Msa1454710:CDS |
| GTTGCTGAAGCAAAGGAAGC+AGG | 0.509400 | tig0035382:+15838 | Msa1454710:CDS |
| GATCCAAGGGATGATCTGTC+TGG | 0.511718 | tig0035382:+15874 | Msa1454710:CDS |
| ACTTGATCAGCTAAGGGATC+AGG | 0.512149 | tig0035382:+14131 | Msa1454710:CDS |
| TCCAATTATGCCCATTGCCA+TGG | 0.512803 | tig0035382:-14085 | None:intergenic |
| AATTATGGGCGCGATATTCA+GGG | 0.512887 | tig0035382:+12237 | Msa1454710:CDS |
| TTCAGTGGATGTAGCTGTAG+AGG | 0.513210 | tig0035382:+9921 | Msa1454710:CDS |
| TCCGGTTGAAAATCTTGTGC+CGG | 0.514423 | tig0035382:+16334 | Msa1454710:CDS |
| TATCAGCCTCTGATAGTTCG+TGG | 0.514794 | tig0035382:+16788 | Msa1454710:CDS |
| CACTGTCTTATCAAGAGGCA+TGG | 0.517169 | tig0035382:+12564 | Msa1454710:CDS |
| ATTAGTCCGGTTATTCGCTA+TGG | 0.518084 | tig0035382:+12718 | Msa1454710:CDS |
| CCTCTGATAGTTCGTGGACC+AGG | 0.519247 | tig0035382:+16794 | Msa1454710:CDS |
| GTGAGTTATAAAATCTGGAA+TGG | 0.520693 | tig0035382:-14056 | None:intergenic |
| AAAAGCTGTAGCTGAGGTGT+TGG | 0.521132 | tig0035382:+13267 | Msa1454710:CDS |
| CTGAGCCAATGCATTGAAAA+GGG | 0.524842 | tig0035382:-13563 | None:intergenic |
| GCACACTACTTGATCAGCTA+AGG | 0.525209 | tig0035382:+14124 | Msa1454710:CDS |
| TGGAACTGATGTTGCAAGAA+AGG | 0.525559 | tig0035382:+15894 | Msa1454710:CDS |
| CTTGGTGAGACTTTCCTCCA+TGG | 0.526328 | tig0035382:-9767 | None:intergenic |
| GAAGACACTGTCTTATCAAG+AGG | 0.529922 | tig0035382:+12559 | Msa1454710:CDS |
| CTCACAAACCACCATGGCAA+TGG | 0.532523 | tig0035382:+14074 | Msa1454710:CDS |
| AAATTTGGTGGAACATGTGT+TGG | 0.532530 | tig0035382:+9982 | Msa1454710:CDS |
| TAATTGGACCTGGATTAATT+GGG | 0.533041 | tig0035382:+14100 | Msa1454710:CDS |
| CCATCTCTCTTGAGAGTAGT+GGG | 0.533662 | tig0035382:-12196 | None:intergenic |
| CTTTACAACGATAGACAACT+TGG | 0.533740 | tig0035382:+12855 | Msa1454710:CDS |
| ATAGTTCGTGGACCAGGAGC+TGG | 0.533819 | tig0035382:+16800 | Msa1454710:CDS |
| ACATCCACGCACAATTAGTC+CGG | 0.537690 | tig0035382:+12705 | Msa1454710:CDS |
| TAGCAAGCCATTATGATGAC+TGG | 0.539173 | tig0035382:+15037 | Msa1454710:CDS |
| TATAGCAAGGATATTTATGT+TGG | 0.541082 | tig0035382:-13959 | None:intergenic |
| TATAGTGCAGATCCTAGAAA+AGG | 0.542051 | tig0035382:+12298 | Msa1454710:CDS |
| TACAGGTGATAATTCTTGCA+AGG | 0.542908 | tig0035382:+16279 | Msa1454710:intron |
| ATATTAAAAGATTATGTCAA+AGG | 0.543405 | tig0035382:+12832 | Msa1454710:CDS |
| AATTATGCCCATTGCCATGG+TGG | 0.544162 | tig0035382:-14082 | None:intergenic |
| AGTGCCAATAATGGGAAGAC+CGG | 0.544262 | tig0035382:-15482 | None:intergenic |
| TGGTCAGTTCACAAATTTGG+TGG | 0.549254 | tig0035382:+9970 | Msa1454710:CDS |
| TCCATCTCTCTTGAGAGTAG+TGG | 0.550339 | tig0035382:-12197 | None:intergenic |
| TGAGGTTGAGAGCTCTTCAA+AGG | 0.554081 | tig0035382:+15419 | Msa1454710:CDS |
| TTTCAACCGGAATATCAGAA+AGG | 0.555395 | tig0035382:-16322 | None:intergenic |
| TGAGGTAGTTGCTGAAGCAA+AGG | 0.555717 | tig0035382:+15831 | Msa1454710:CDS |
| ATTTGACTTACAAATCATCA+AGG | 0.556857 | tig0035382:-14414 | None:intergenic |
| TACTGTTGTTCTTAAGCGAG+AGG | 0.558979 | tig0035382:+14008 | Msa1454710:CDS |
| AGTGTGCTCCCAATTAATCC+AGG | 0.560803 | tig0035382:-14108 | None:intergenic |
| GCTGGTGCACAAGTCACAGC+TGG | 0.561903 | tig0035382:+16818 | Msa1454710:CDS |
| ACAGGTGATAATTCTTGCAA+GGG | 0.563545 | tig0035382:+16280 | Msa1454710:intron |
| CCCACTACTCTCAAGAGAGA+TGG | 0.565006 | tig0035382:+12196 | Msa1454710:CDS |
| TTATCAAGAGGCATGGGAGA+TGG | 0.567207 | tig0035382:+12571 | Msa1454710:CDS |
| TATGAAGCTACTGTTGGAGC+CGG | 0.567702 | tig0035382:+15463 | Msa1454710:CDS |
| GGTATTGAGATACGTGGGAG+TGG | 0.569260 | tig0035382:+16649 | Msa1454710:intron |
| TTATGATGACTGGTTGCGCA+AGG | 0.569745 | tig0035382:+15047 | Msa1454710:CDS |
| AGAAGTAAAAGCTGTAGCTG+AGG | 0.575535 | tig0035382:+13261 | Msa1454710:CDS |
| CTGAGATATCATAATAACAT+TGG | 0.576835 | tig0035382:-13100 | None:intergenic |
| AACAACCTTGTGCTATAGCA+AGG | 0.580471 | tig0035382:-13972 | None:intergenic |
| AGCATTGCAGATTAACTACA+AGG | 0.581807 | tig0035382:+17019 | Msa1454710:three_prime_UTR |
| ACCATCAACGTCGGTCCAGA+TGG | 0.582380 | tig0035382:-12272 | None:intergenic |
| TTGCGTGTAATGGGGATCAT+GGG | 0.583341 | tig0035382:+14376 | Msa1454710:CDS |
| GGTGCACAAGTCACAGCTGG+TGG | 0.583364 | tig0035382:+16821 | Msa1454710:CDS |
| TTGTTGTGGCGTGGAAAATG+TGG | 0.586339 | tig0035382:-9561 | None:intergenic |
| GATCTTGGTTCCAGAAGCAG+AGG | 0.589515 | tig0035382:-12773 | None:intergenic |
| GTTCCAGACAGATCATCCCT+TGG | 0.593893 | tig0035382:-15877 | None:intergenic |
| AAATGGAGAAGAAAGATTGG+TGG | 0.597550 | tig0035382:-9533 | None:intergenic |
| ATCGCATTTACCTCACTAAG+TGG | 0.597865 | tig0035382:-15111 | None:intergenic |
| GCAATGGGCATAATTGGACC+TGG | 0.598231 | tig0035382:+14090 | Msa1454710:CDS |
| ACTGTCTTATCAAGAGGCAT+GGG | 0.602739 | tig0035382:+12565 | Msa1454710:CDS |
| GGGGAATCGACTTAGTAAAG+TGG | 0.602813 | tig0035382:+14896 | Msa1454710:intron |
| CACACTACTTGATCAGCTAA+GGG | 0.604044 | tig0035382:+14125 | Msa1454710:CDS |
| GTTATACTGAACCAGATCCA+AGG | 0.604842 | tig0035382:+15860 | Msa1454710:CDS |
| GGAATGTGAAGAAGATTGAA+AGG | 0.609635 | tig0035382:-9589 | None:intergenic |
| ATTGAAAGGTGAAGTTGTTG+TGG | 0.609959 | tig0035382:-9575 | None:intergenic |
| AAATCATGTTATACCAAACA+CGG | 0.611522 | tig0035382:+14984 | Msa1454710:CDS |
| TGGCACTTGTAAATGTAGAA+GGG | 0.620113 | tig0035382:+12875 | Msa1454710:CDS |
| TTGAAGGTATTGAGATACGT+GGG | 0.620162 | tig0035382:+16644 | Msa1454710:intron |
| TTATACTGAACCAGATCCAA+GGG | 0.626685 | tig0035382:+15861 | Msa1454710:CDS |
| GTAGACGTAACGAATCAAAA+GGG | 0.627263 | tig0035382:+16671 | Msa1454710:CDS |
| ACATTGATTTGCGTGTAATG+GGG | 0.630578 | tig0035382:+14368 | Msa1454710:CDS |
| AAAGTGGAGAGAAATTCGAG+AGG | 0.631796 | tig0035382:+14912 | Msa1454710:CDS |
| CGTAACGAATCAAAAGGGAA+TGG | 0.634389 | tig0035382:+16676 | Msa1454710:CDS |
| CGAGCTACGAAGATACAAGA+AGG | 0.634713 | tig0035382:+16700 | Msa1454710:CDS |
| TATGATGACTGGTTGCGCAA+GGG | 0.635447 | tig0035382:+15048 | Msa1454710:CDS |
| AAGGTGAAGTTGTTGTGGCG+TGG | 0.636050 | tig0035382:-9570 | None:intergenic |
| AAATTTGTTCAACATGTACA+CGG | 0.636911 | tig0035382:+14961 | Msa1454710:CDS |
| CCTGGTCCACGAACTATCAG+AGG | 0.638898 | tig0035382:-16794 | None:intergenic |
| AAATTCAGGACCACTTAGTG+AGG | 0.640316 | tig0035382:+15101 | Msa1454710:CDS |
| TCAACTTGATCAGCACGAGT+AGG | 0.640482 | tig0035382:-12067 | None:intergenic |
| AATATCCTTGCTATAGCACA+AGG | 0.642453 | tig0035382:+13967 | Msa1454710:CDS |
| GTGGCGTGGAAAATGTGGAC+GGG | 0.645608 | tig0035382:-9556 | None:intergenic |
| TTTGAAGGTATTGAGATACG+TGG | 0.650454 | tig0035382:+16643 | Msa1454710:intron |
| AGCCAATGCATTGAAAAGGG+TGG | 0.652774 | tig0035382:-13560 | None:intergenic |
| CACGAGTAGGATTTACAATG+AGG | 0.660532 | tig0035382:-12054 | None:intergenic |
| AGCTACCAAAAGGAGAAACA+TGG | 0.661800 | tig0035382:+9950 | Msa1454710:CDS |
| TGATTCTGAGAGAAAATTGG+TGG | 0.666882 | tig0035382:+10050 | Msa1454710:CDS |
| AGGATTCTATAAAGGCTCTG+CGG | 0.673860 | tig0035382:+14028 | Msa1454710:CDS |
| TTATAACTCACAAACCACCA+TGG | 0.674251 | tig0035382:+14068 | Msa1454710:CDS |
| AGACGGAGCACCAAGATACG+AGG | 0.682883 | tig0035382:-16870 | None:intergenic |
| ATAACCGGACTAATTGTGCG+TGG | 0.684824 | tig0035382:-12709 | None:intergenic |
| GATGTATGATCTCATCCACA+AGG | 0.691167 | tig0035382:+10104 | Msa1454710:CDS |
| ACTATACACACCATCAACGT+CGG | 0.693688 | tig0035382:-12281 | None:intergenic |
| GAAATTACCAAAATTTGACG+AGG | 0.695620 | tig0035382:+16484 | Msa1454710:CDS |
| TGTGGCGTGGAAAATGTGGA+CGG | 0.699920 | tig0035382:-9557 | None:intergenic |
| GGATCACATTCACATTCACG+GGG | 0.741804 | tig0035382:-9512 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAAATTTAAAAAATTT+CGG | + | tig0035382:10791-10810 | Msa1454710:intron | 0.0% |
| !! | TAAATAAATAGATAGTTATT+TGG | - | tig0035382:10748-10767 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAGACAATAATT+AGG | - | tig0035382:11534-11553 | None:intergenic | 10.0% |
| !! | AAAATATTCCTTATTATAAT+TGG | - | tig0035382:12748-12767 | None:intergenic | 10.0% |
| !! | TCAACATAATAAAAAAATTA+AGG | + | tig0035382:15176-15195 | Msa1454710:intron | 10.0% |
| !! | TTATGTTAAAACAAAAATTA+TGG | + | tig0035382:15260-15279 | Msa1454710:intron | 10.0% |
| !! | TTTGTAGTATTTAGTAAAAT+TGG | - | tig0035382:10608-10627 | None:intergenic | 15.0% |
| !! | ATATTAAAAGATTATGTCAA+AGG | + | tig0035382:12832-12851 | Msa1454710:CDS | 15.0% |
| !! | TATTCTAAACTTAACAAAAA+CGG | - | tig0035382:13606-13625 | None:intergenic | 15.0% |
| !!! | CTCTATTAGTAATTTTAATT+TGG | + | tig0035382:14834-14853 | Msa1454710:intron | 15.0% |
| !! | ATGTGGTATATATATAGTTA+AGG | - | tig0035382:9653-9672 | None:intergenic | 20.0% |
| !! | AATTATAAGTTATAAGCTAC+AGG | - | tig0035382:10479-10498 | None:intergenic | 20.0% |
| !! | AATAGATAGTTATTTGGTTA+AGG | - | tig0035382:10742-10761 | None:intergenic | 20.0% |
| !!! | TAAAAAATTTCGGCTTTATT+TGG | + | tig0035382:10801-10820 | Msa1454710:intron | 20.0% |
| !!! | GAAGTGTTTAGTAAAATTAA+CGG | + | tig0035382:10880-10899 | Msa1454710:intron | 20.0% |
| !!! | TTTTTCTTATTTTTTCGTGT+TGG | - | tig0035382:11424-11443 | None:intergenic | 20.0% |
| !!! | AACGACAAATATTTTTGATA+TGG | + | tig0035382:11447-11466 | Msa1454710:intron | 20.0% |
| !! | TTGTCTTACTTAAAATTCTT+TGG | + | tig0035382:11565-11584 | Msa1454710:intron | 20.0% |
| !!! | CTATGTTAAGCTTAATTTTT+TGG | + | tig0035382:11628-11647 | Msa1454710:intron | 20.0% |
| !!! | AAAGAAAGAAGTATTTATCA+TGG | + | tig0035382:11654-11673 | Msa1454710:intron | 20.0% |
| !!! | TATTAAGTGTGTTATTAGTT+GGG | - | tig0035382:11734-11753 | None:intergenic | 20.0% |
| !!! | TATTTTTTATCTTAACCCTA+TGG | - | tig0035382:11945-11964 | None:intergenic | 20.0% |
| !!! | TCTTCATTTTCAATAATAGA+AGG | - | tig0035382:12805-12824 | None:intergenic | 20.0% |
| !! | TAAAGTAATAGAATTTCGAT+GGG | + | tig0035382:13699-13718 | Msa1454710:intron | 20.0% |
| !! | AAATCAGGTGAAATATATTA+AGG | + | tig0035382:13803-13822 | Msa1454710:intron | 20.0% |
| !! | AAATATATTAAGGAAGAAGA+GGG | + | tig0035382:13813-13832 | Msa1454710:intron | 20.0% |
| !!! | AAGGAAATGTTTTAATATGT+TGG | + | tig0035382:13875-13894 | Msa1454710:intron | 20.0% |
| !!! | TGCTTTCAAGTATTATAAAT+TGG | + | tig0035382:14204-14223 | Msa1454710:intron | 20.0% |
| !! | ACAAGTATTATGTTTATGTA+GGG | + | tig0035382:14258-14277 | Msa1454710:intron | 20.0% |
| !! | ACATGAATTAATCTATCAAT+CGG | - | tig0035382:14306-14325 | None:intergenic | 20.0% |
| !! | TTACATCTTTAATAACTTCA+AGG | + | tig0035382:15792-15811 | Msa1454710:CDS | 20.0% |
| !! | TCATCACAAAGATTATATTA+TGG | - | tig0035382:17093-17112 | None:intergenic | 20.0% |
| ! | AAAAGCAAAACAAAACCATT+TGG | - | tig0035382:9491-9510 | None:intergenic | 25.0% |
| !!! | TTTATGCTTTTAGTTTACCA+TGG | + | tig0035382:9750-9769 | Msa1454710:intron | 25.0% |
| ! | TCAAGATGTTGGAAATTTAA+AGG | + | tig0035382:10245-10264 | Msa1454710:intron | 25.0% |
| ! | AAGCTCGTAATAATAAATCA+AGG | - | tig0035382:10395-10414 | None:intergenic | 25.0% |
| !! | CTTTATTTGGTAAAAAGTAG+TGG | + | tig0035382:10814-10833 | Msa1454710:intron | 25.0% |
| !! | ACAAAATTGTTAGCTTATAG+AGG | - | tig0035382:10969-10988 | None:intergenic | 25.0% |
| !! | TGATACATATTTACCTGTTT+TGG | + | tig0035382:11149-11168 | Msa1454710:intron | 25.0% |
| ! | TGTTAAGATTTCATGATTGA+TGG | + | tig0035382:11266-11285 | Msa1454710:intron | 25.0% |
| !! | TGTTGCTTAAAAGAAATTTC+TGG | + | tig0035382:11699-11718 | Msa1454710:intron | 25.0% |
| !! | GTATTAAGTGTGTTATTAGT+TGG | - | tig0035382:11735-11754 | None:intergenic | 25.0% |
| !!! | ATTGTCTTTTGTTGTTAAGA+AGG | + | tig0035382:11829-11848 | Msa1454710:intron | 25.0% |
| ! | CTGAACAAAGACTTAATAAA+TGG | + | tig0035382:12107-12126 | Msa1454710:CDS | 25.0% |
| ! | TAAATGAAGAATAAATGCCA+TGG | - | tig0035382:12423-12442 | None:intergenic | 25.0% |
| !! | GTTAATCTCCTGAATTTTAA+GGG | - | tig0035382:12640-12659 | None:intergenic | 25.0% |
| !! | AGTTAATCTCCTGAATTTTA+AGG | - | tig0035382:12641-12660 | None:intergenic | 25.0% |
| ! | ATGGCATACCAATTATAATA+AGG | + | tig0035382:12737-12756 | Msa1454710:CDS | 25.0% |
| ! | CATTATAGTCTACAACATTT+GGG | - | tig0035382:12990-13009 | None:intergenic | 25.0% |
| ! | ACATTATAGTCTACAACATT+TGG | - | tig0035382:12991-13010 | None:intergenic | 25.0% |
| !!! | ATTGTTTTGTTTTGTAGAAC+TGG | + | tig0035382:13018-13037 | Msa1454710:intron | 25.0% |
| ! | CTGAGATATCATAATAACAT+TGG | - | tig0035382:13103-13122 | None:intergenic | 25.0% |
| ! | CAATGTTATTATGATATCTC+AGG | + | tig0035382:13101-13120 | Msa1454710:CDS | 25.0% |
| ! | TGAACAAAAGAAGAAGAATT+TGG | - | tig0035382:13389-13408 | None:intergenic | 25.0% |
| !! | CATTTCAAATTGCAGTATTT+TGG | + | tig0035382:13495-13514 | Msa1454710:CDS | 25.0% |
| ! | CTAAAGTAATAGAATTTCGA+TGG | + | tig0035382:13698-13717 | Msa1454710:intron | 25.0% |
| ! | GAAATATATTAAGGAAGAAG+AGG | + | tig0035382:13812-13831 | Msa1454710:intron | 25.0% |
| ! | AATATATTAAGGAAGAAGAG+GGG | + | tig0035382:13814-13833 | Msa1454710:intron | 25.0% |
| ! | AAGATATCAAAGAAAGATGA+AGG | + | tig0035382:13856-13875 | Msa1454710:intron | 25.0% |
| !!! | TCATTTGTCTAACTTGTTTA+TGG | + | tig0035382:13914-13933 | Msa1454710:intron | 25.0% |
| ! | TATAGCAAGGATATTTATGT+TGG | - | tig0035382:13962-13981 | None:intergenic | 25.0% |
| ! | CTACATAAACATAATACTTG+TGG | - | tig0035382:14259-14278 | None:intergenic | 25.0% |
| ! | CACAAGTATTATGTTTATGT+AGG | + | tig0035382:14257-14276 | Msa1454710:intron | 25.0% |
| ! | CATGAATTAATCTATCAATC+GGG | - | tig0035382:14305-14324 | None:intergenic | 25.0% |
| !! | TTTATCTTTTTGTTACACTC+AGG | - | tig0035382:14529-14548 | None:intergenic | 25.0% |
| !! | GAATGAAACAAACACATTTT+TGG | + | tig0035382:14692-14711 | Msa1454710:intron | 25.0% |
| !!! | ACACATTTTTGGAAAGTTAT+TGG | + | tig0035382:14703-14722 | Msa1454710:intron | 25.0% |
| ! | TAAAATTACTAATAGAGCAG+AGG | - | tig0035382:14831-14850 | None:intergenic | 25.0% |
| ! | AACTATAGTTTCTTATTGCA+GGG | + | tig0035382:14876-14895 | Msa1454710:intron | 25.0% |
| !! | AAATTTGTTCAACATGTACA+CGG | + | tig0035382:14961-14980 | Msa1454710:CDS | 25.0% |
| ! | AAATCATGTTATACCAAACA+CGG | + | tig0035382:14984-15003 | Msa1454710:CDS | 25.0% |
| ! | GACAAAATATTGCAAATTGA+AGG | + | tig0035382:15529-15548 | Msa1454710:CDS | 25.0% |
| ! | AAATTCAAAGTAGCAATTCA+AGG | + | tig0035382:15683-15702 | Msa1454710:intron | 25.0% |
| !!! | TATTACTTCTGATTTTTCAG+TGG | + | tig0035382:15760-15779 | Msa1454710:intron | 25.0% |
| !!! | ATTACTTCTGATTTTTCAGT+GGG | + | tig0035382:15761-15780 | Msa1454710:intron | 25.0% |
| ! | ATCTTTAATAACTTCAAGGA+TGG | + | tig0035382:15796-15815 | Msa1454710:CDS | 25.0% |
| ! | AAAACTGTGAGAATAAAATG+TGG | - | tig0035382:15946-15965 | None:intergenic | 25.0% |
| ! | CAAGCTTATACATAAATTTG+AGG | - | tig0035382:16023-16042 | None:intergenic | 25.0% |
| !! | ATTTGATTTCAAGCTTAGAA+TGG | + | tig0035382:16063-16082 | Msa1454710:intron | 25.0% |
| !! | GTGTATTTCAAATGTTTCTA+AGG | - | tig0035382:16112-16131 | None:intergenic | 25.0% |
| !!! | AAATACACAAGTTGATTTCA+TGG | + | tig0035382:16124-16143 | Msa1454710:intron | 25.0% |
| ! | AACTGCATAATTCATGAAAT+CGG | - | tig0035382:16378-16397 | None:intergenic | 25.0% |
| !! | TGGAAAAACTAATAGTTTGT+AGG | - | tig0035382:16577-16596 | None:intergenic | 25.0% |
| ! | ATACTATGAAGAAAATGTCA+TGG | - | tig0035382:16600-16619 | None:intergenic | 25.0% |
| ! | AGAACATTTGTAATGTTTGA+AGG | + | tig0035382:16628-16647 | Msa1454710:intron | 25.0% |
| ! | AATGTTACACTAAGAAGAAA+GGG | - | tig0035382:16948-16967 | None:intergenic | 25.0% |
| ! | TAATGTTACACTAAGAAGAA+AGG | - | tig0035382:16949-16968 | None:intergenic | 25.0% |
| ! | CTTTGTGATGATATATATCT+TGG | + | tig0035382:17102-17121 | Msa1454710:three_prime_UTR | 25.0% |
| GTAAAAGAAAAGATACCTGA+GGG | - | tig0035382:9613-9632 | None:intergenic | 30.0% | |
| AGTAAAAGAAAAGATACCTG+AGG | - | tig0035382:9614-9633 | None:intergenic | 30.0% | |
| TTGTTGAGCATTTATTCATG+TGG | - | tig0035382:9670-9689 | None:intergenic | 30.0% | |
| AAAACAAGAAAATGCAGTGA+AGG | - | tig0035382:9729-9748 | None:intergenic | 30.0% | |
| !! | GTCTTTATCAGATTTTTCAG+TGG | + | tig0035382:9906-9925 | Msa1454710:intron | 30.0% |
| ! | TGATGATTCTGAGAGAAAAT+TGG | + | tig0035382:10047-10066 | Msa1454710:CDS | 30.0% |
| TCAAATTTGCATCAAGATGT+TGG | + | tig0035382:10234-10253 | Msa1454710:intron | 30.0% | |
| AAAACAACAGAACAAAAGAG+AGG | - | tig0035382:10300-10319 | None:intergenic | 30.0% | |
| TTCTTTCTTTAGTCTCTGTT+TGG | + | tig0035382:10318-10337 | Msa1454710:intron | 30.0% | |
| ! | CACAAATAAGCTAGTTGATA+GGG | - | tig0035382:10650-10669 | None:intergenic | 30.0% |
| ACACAAATAAGCTAGTTGAT+AGG | - | tig0035382:10651-10670 | None:intergenic | 30.0% | |
| !! | TATTTGGTTAAGGCTTTGTT+TGG | - | tig0035382:10732-10751 | None:intergenic | 30.0% |
| AAAAGTAGATACAGACACTA+AGG | - | tig0035382:11005-11024 | None:intergenic | 30.0% | |
| ! | AGAACAAAAGTGTAAGTATC+TGG | + | tig0035382:11094-11113 | Msa1454710:intron | 30.0% |
| CAAATCAGAAAGAACAAAGA+TGG | - | tig0035382:11121-11140 | None:intergenic | 30.0% | |
| CATCTTTGTTCTTTCTGATT+TGG | + | tig0035382:11119-11138 | Msa1454710:intron | 30.0% | |
| ACCTCAGGTCTAAATAAAAA+GGG | - | tig0035382:11485-11504 | None:intergenic | 30.0% | |
| AACCTCAGGTCTAAATAAAA+AGG | - | tig0035382:11486-11505 | None:intergenic | 30.0% | |
| TCACAATTAAGAAAAACCTC+AGG | - | tig0035382:11500-11519 | None:intergenic | 30.0% | |
| GACAATAATTAGGAGTTAAC+AGG | - | tig0035382:11524-11543 | None:intergenic | 30.0% | |
| TACTTAAAATTCTTTGGCTG+AGG | + | tig0035382:11571-11590 | Msa1454710:intron | 30.0% | |
| TAGGTAGAACAATTCTTATC+CGG | + | tig0035382:11865-11884 | Msa1454710:intron | 30.0% | |
| CATCATATAATATCCACTGA+TGG | - | tig0035382:12358-12377 | None:intergenic | 30.0% | |
| CATCAGTGGATATTATATGA+TGG | + | tig0035382:12356-12375 | Msa1454710:intron | 30.0% | |
| ACTTATATCGATACATACCA+TGG | + | tig0035382:12403-12422 | Msa1454710:intron | 30.0% | |
| !!! | TTTGTTTTGTAGAACTGGAA+TGG | + | tig0035382:13023-13042 | Msa1454710:intron | 30.0% |
| !!! | TATTTTTAGCGCAGTAAAAG+AGG | + | tig0035382:13071-13090 | Msa1454710:CDS | 30.0% |
| ATGTAACTGTGGATAAACAA+GGG | - | tig0035382:13155-13174 | None:intergenic | 30.0% | |
| CAATTTCATACATGTAACTG+TGG | - | tig0035382:13166-13185 | None:intergenic | 30.0% | |
| ATGTTTAACTGTGTTTGTGT+AGG | + | tig0035382:13198-13217 | Msa1454710:intron | 30.0% | |
| !!! | AGTTGTTTTTTGACAAGAAG+TGG | - | tig0035382:13433-13452 | None:intergenic | 30.0% |
| AGAGAAACAAGTCTTAAATC+AGG | + | tig0035382:13788-13807 | Msa1454710:intron | 30.0% | |
| GTCAAACTTGTAAATGAAAC+AGG | + | tig0035382:13936-13955 | Msa1454710:intron | 30.0% | |
| GTGAGTTATAAAATCTGGAA+TGG | - | tig0035382:14059-14078 | None:intergenic | 30.0% | |
| GGTTTGTGAGTTATAAAATC+TGG | - | tig0035382:14064-14083 | None:intergenic | 30.0% | |
| ATAATTGGACCTGGATTAAT+TGG | + | tig0035382:14099-14118 | Msa1454710:CDS | 30.0% | |
| TAATTGGACCTGGATTAATT+GGG | + | tig0035382:14100-14119 | Msa1454710:CDS | 30.0% | |
| !!! | CATGTAACATTTTTTCATGC+AGG | + | tig0035382:14321-14340 | Msa1454710:intron | 30.0% |
| !! | AAACATTGATTTGCGTGTAA+TGG | + | tig0035382:14366-14385 | Msa1454710:CDS | 30.0% |
| !! | AACATTGATTTGCGTGTAAT+GGG | + | tig0035382:14367-14386 | Msa1454710:CDS | 30.0% |
| GTTAATTCCTTAGCATTCAA+GGG | - | tig0035382:14455-14474 | None:intergenic | 30.0% | |
| TGTTAATTCCTTAGCATTCA+AGG | - | tig0035382:14456-14475 | None:intergenic | 30.0% | |
| AATCGCTTAATCAACAATGA+AGG | + | tig0035382:14480-14499 | Msa1454710:intron | 30.0% | |
| TATCAACAGATGAATATCGA+GGG | - | tig0035382:14746-14765 | None:intergenic | 30.0% | |
| GAACTATAGTTTCTTATTGC+AGG | + | tig0035382:14875-14894 | Msa1454710:intron | 30.0% | |
| ACTATAGTTTCTTATTGCAG+GGG | + | tig0035382:14877-14896 | Msa1454710:intron | 30.0% | |
| ! | TGAATTTGCCTTTTTATTGG+GGG | - | tig0035382:15088-15107 | None:intergenic | 30.0% |
| ! | CTGAATTTGCCTTTTTATTG+GGG | - | tig0035382:15089-15108 | None:intergenic | 30.0% |
| ! | CCTGAATTTGCCTTTTTATT+GGG | - | tig0035382:15090-15109 | None:intergenic | 30.0% |
| ! | TCCTGAATTTGCCTTTTTAT+TGG | - | tig0035382:15091-15110 | None:intergenic | 30.0% |
| ACATAACAATAGCCAGTAAA+AGG | - | tig0035382:15139-15158 | None:intergenic | 30.0% | |
| ! | TAGTAAAGAGTGTGTTAATC+AGG | - | tig0035382:15329-15348 | None:intergenic | 30.0% |
| ! | ATTCACAAGTTCCTCTTTTT+GGG | + | tig0035382:15353-15372 | Msa1454710:intron | 30.0% |
| ! | TACTTTTATGAAGCTACTGT+TGG | + | tig0035382:15457-15476 | Msa1454710:CDS | 30.0% |
| ATCTTATGCTTTCAAACTGA+AGG | + | tig0035382:15737-15756 | Msa1454710:intron | 30.0% | |
| TGTCATTATAGTACATGTTC+CGG | - | tig0035382:16199-16218 | None:intergenic | 30.0% | |
| TACTATAATGACAGCTTTCT+TGG | + | tig0035382:16206-16225 | Msa1454710:intron | 30.0% | |
| !! | CATTTAGCTTTAAATTCCTG+TGG | + | tig0035382:16253-16272 | Msa1454710:intron | 30.0% |
| ! | AAATCGGTTCTTACTCTTAA+TGG | - | tig0035382:16362-16381 | None:intergenic | 30.0% |
| ! | ATGTACTTTTGCACTAAACA+TGG | + | tig0035382:16410-16429 | Msa1454710:intron | 30.0% |
| !! | ATACCTTGATGATTTTATGC+AGG | + | tig0035382:16433-16452 | Msa1454710:intron | 30.0% |
| TAACCTGCATAAAATCATCA+AGG | - | tig0035382:16439-16458 | None:intergenic | 30.0% | |
| GAAATTACCAAAATTTGACG+AGG | + | tig0035382:16484-16503 | Msa1454710:CDS | 30.0% | |
| TAAGTAACTAGACAGTATTC+TGG | + | tig0035382:16549-16568 | Msa1454710:intron | 30.0% | |
| CAAAAAGACAGTATCTAAGA+CGG | - | tig0035382:16890-16909 | None:intergenic | 30.0% | |
| AAGAAAGGGATCAAATTAGA+TGG | - | tig0035382:16934-16953 | None:intergenic | 30.0% | |
| TCTTAGTGTAACATTAGTTC+TGG | + | tig0035382:16953-16972 | Msa1454710:three_prime_UTR | 30.0% | |
| AAATGGAGAAGAAAGATTGG+TGG | - | tig0035382:9536-9555 | None:intergenic | 35.0% | |
| ATTGAAAGGTGAAGTTGTTG+TGG | - | tig0035382:9578-9597 | None:intergenic | 35.0% | |
| GGAATGTGAAGAAGATTGAA+AGG | - | tig0035382:9592-9611 | None:intergenic | 35.0% | |
| !!! | ATGCTTTTAGTTTACCATGG+AGG | + | tig0035382:9753-9772 | Msa1454710:intron | 35.0% |
| ! | GAAGAGTGTATCTTGATTCT+TGG | - | tig0035382:9788-9807 | None:intergenic | 35.0% |
| AAGATACACTCTTCACTTAC+AGG | + | tig0035382:9794-9813 | Msa1454710:CDS | 35.0% | |
| GAGGAAAAAAAGCTACCAAA+AGG | + | tig0035382:9940-9959 | Msa1454710:CDS | 35.0% | |
| ACATGGTCAGTTCACAAATT+TGG | + | tig0035382:9967-9986 | Msa1454710:CDS | 35.0% | |
| ! | AAATTTGGTGGAACATGTGT+TGG | + | tig0035382:9982-10001 | Msa1454710:CDS | 35.0% |
| ! | TGATTCTGAGAGAAAATTGG+TGG | + | tig0035382:10050-10069 | Msa1454710:CDS | 35.0% |
| ! | TGAAGAGAAGCATAGCTTAA+CGG | + | tig0035382:10170-10189 | Msa1454710:CDS | 35.0% |
| ATGCTTCAAGCTATTGACAT+AGG | + | tig0035382:10270-10289 | Msa1454710:intron | 35.0% | |
| TCTTTAGTCTCTGTTTGGTA+AGG | + | tig0035382:10323-10342 | Msa1454710:intron | 35.0% | |
| !! | AAGTAGAAGCTAGTTGATAG+TGG | - | tig0035382:10705-10724 | None:intergenic | 35.0% |
| !! | TGGTAAAAAGTAGTGGATGA+TGG | + | tig0035382:10821-10840 | Msa1454710:intron | 35.0% |
| ! | CAACTTTGCATGCTTTTCTT+AGG | - | tig0035382:11065-11084 | None:intergenic | 35.0% |
| !! | TTTTGGTGTACTTGTGCATA+TGG | + | tig0035382:11166-11185 | Msa1454710:intron | 35.0% |
| ! | TTTTGTGATCAAAGAGCTAG+AGG | + | tig0035382:11201-11220 | Msa1454710:intron | 35.0% |
| TTCATTTCTCTCATCATGCA+TGG | + | tig0035382:11305-11324 | Msa1454710:intron | 35.0% | |
| TGCTGAACAAGAAATACTGT+TGG | - | tig0035382:11364-11383 | None:intergenic | 35.0% | |
| !! | TCCCTTTTTATTTAGACCTG+AGG | + | tig0035382:11481-11500 | Msa1454710:intron | 35.0% |
| !! | ATCCTTTACTGACTTAGTTG+TGG | + | tig0035382:11778-11797 | Msa1454710:intron | 35.0% |
| !! | TCCTTTACTGACTTAGTTGT+GGG | + | tig0035382:11779-11798 | Msa1454710:intron | 35.0% |
| !! | AGAAGGTATGTTCGAGTTTT+AGG | + | tig0035382:11846-11865 | Msa1454710:intron | 35.0% |
| TTCCTTTCTACTTTGCAGAA+AGG | + | tig0035382:11998-12017 | Msa1454710:intron | 35.0% | |
| TCCTTTCTACTTTGCAGAAA+GGG | + | tig0035382:11999-12018 | Msa1454710:intron | 35.0% | |
| !! | TCAAGTTGATCCTGATTACT+TGG | + | tig0035382:12081-12100 | Msa1454710:CDS | 35.0% |
| TGTTCAGTTTCCAAGTAATC+AGG | - | tig0035382:12094-12113 | None:intergenic | 35.0% | |
| GTACTCTCTTAATCCATCTA+AGG | + | tig0035382:12129-12148 | Msa1454710:CDS | 35.0% | |
| TATAGTGCAGATCCTAGAAA+AGG | + | tig0035382:12298-12317 | Msa1454710:CDS | 35.0% | |
| ! | AAGCAGAACAAACCTTTTCT+AGG | - | tig0035382:12313-12332 | None:intergenic | 35.0% |
| AAAATCACAGCATCACTAAC+TGG | - | tig0035382:12539-12558 | None:intergenic | 35.0% | |
| TTCTTGTGCCCTTAAAATTC+AGG | + | tig0035382:12629-12648 | Msa1454710:intron | 35.0% | |
| !!! | CATCTTGTGCAGTCTTATTT+TGG | + | tig0035382:12670-12689 | Msa1454710:intron | 35.0% |
| AATAGAAGGATAGCAGATCT+TGG | - | tig0035382:12791-12810 | None:intergenic | 35.0% | |
| CTTTACAACGATAGACAACT+TGG | + | tig0035382:12855-12874 | Msa1454710:CDS | 35.0% | |
| TTGGCACTTGTAAATGTAGA+AGG | + | tig0035382:12874-12893 | Msa1454710:CDS | 35.0% | |
| TGGCACTTGTAAATGTAGAA+GGG | + | tig0035382:12875-12894 | Msa1454710:CDS | 35.0% | |
| TACTGCGCTAAAAATAGTAC+TGG | - | tig0035382:13067-13086 | None:intergenic | 35.0% | |
| CATGTAACTGTGGATAAACA+AGG | - | tig0035382:13156-13175 | None:intergenic | 35.0% | |
| ! | ACAGCTTTTACTTCTTTCTC+AGG | - | tig0035382:13256-13275 | None:intergenic | 35.0% |
| TGTTATAGCAGAATTGGAGT+TGG | - | tig0035382:13340-13359 | None:intergenic | 35.0% | |
| GCATGTTGTTATAGCAGAAT+TGG | - | tig0035382:13346-13365 | None:intergenic | 35.0% | |
| AAAGTATGTAACCACTTCTC+AGG | + | tig0035382:13465-13484 | Msa1454710:intron | 35.0% | |
| TTCCCTTTCTTTAATGTCCA+GGG | - | tig0035382:13735-13754 | None:intergenic | 35.0% | |
| GACATTAAAGAAAGGGAACA+AGG | + | tig0035382:13737-13756 | Msa1454710:intron | 35.0% | |
| ! | AATATCCTTGCTATAGCACA+AGG | + | tig0035382:13967-13986 | Msa1454710:CDS | 35.0% |
| TAAGCGAGAGGATTCTATAA+AGG | + | tig0035382:14020-14039 | Msa1454710:CDS | 35.0% | |
| TTATAACTCACAAACCACCA+TGG | + | tig0035382:14068-14087 | Msa1454710:CDS | 35.0% | |
| !! | ACATTGATTTGCGTGTAATG+GGG | + | tig0035382:14368-14387 | Msa1454710:CDS | 35.0% |
| CTTCCAGAGATGATAGAAAT+TGG | + | tig0035382:14587-14606 | Msa1454710:intron | 35.0% | |
| CCAAAAAGTTCGAGTGAAAT+GGG | - | tig0035382:14619-14638 | None:intergenic | 35.0% | |
| ACCAAAAAGTTCGAGTGAAA+TGG | - | tig0035382:14620-14639 | None:intergenic | 35.0% | |
| TCTCTGATTATTAGATCTCC+AGG | + | tig0035382:14667-14686 | Msa1454710:intron | 35.0% | |
| CTATCAACAGATGAATATCG+AGG | - | tig0035382:14747-14766 | None:intergenic | 35.0% | |
| CTCGATATTCATCTGTTGAT+AGG | + | tig0035382:14745-14764 | Msa1454710:intron | 35.0% | |
| AGAGAAATTCGAGAGGAAAA+AGG | + | tig0035382:14919-14938 | Msa1454710:CDS | 35.0% | |
| !! | ATCATAATGGCTTGCTATGA+CGG | - | tig0035382:15034-15053 | None:intergenic | 35.0% |
| TGTAATCACCCCCAATAAAA+AGG | + | tig0035382:15077-15096 | Msa1454710:CDS | 35.0% | |
| CCCAATAAAAAGGCAAATTC+AGG | + | tig0035382:15087-15106 | Msa1454710:CDS | 35.0% | |
| ! | TAAATGCGATGTCCTTTTAC+TGG | + | tig0035382:15124-15143 | Msa1454710:intron | 35.0% |
| ! | GATTCACAAGTTCCTCTTTT+TGG | + | tig0035382:15352-15371 | Msa1454710:intron | 35.0% |
| ! | CCTCAAATACTAGAAGCATA+GGG | - | tig0035382:15404-15423 | None:intergenic | 35.0% |
| ! | ACCTCAAATACTAGAAGCAT+AGG | - | tig0035382:15405-15424 | None:intergenic | 35.0% |
| TTCCCATTATTGGCACTTTA+CGG | + | tig0035382:15488-15507 | Msa1454710:CDS | 35.0% | |
| !!! | TCTTCCACTTGTCTTTTTTG+TGG | + | tig0035382:15584-15603 | Msa1454710:intron | 35.0% |
| !!! | CACTTGTCTTTTTTGTGGAT+CGG | + | tig0035382:15589-15608 | Msa1454710:intron | 35.0% |
| TTTATTTGTCCCTTCAGAGA+TGG | - | tig0035382:15666-15685 | None:intergenic | 35.0% | |
| CAACTACCTCACTAAAAACT+CGG | - | tig0035382:15822-15841 | None:intergenic | 35.0% | |
| TTATACTGAACCAGATCCAA+GGG | + | tig0035382:15861-15880 | Msa1454710:CDS | 35.0% | |
| ACAACAAACTACGACACATT+TGG | - | tig0035382:15981-16000 | None:intergenic | 35.0% | |
| !! | TACACAAGTTGATTTCATGG+TGG | + | tig0035382:16127-16146 | Msa1454710:intron | 35.0% |
| ! | CATGCAATGTGCATATTTTG+AGG | - | tig0035382:16160-16179 | None:intergenic | 35.0% |
| ATGATTTCATGAGAACTAGC+CGG | + | tig0035382:16177-16196 | Msa1454710:intron | 35.0% | |
| ACAGCTTTCTTGGTTTATGA+TGG | + | tig0035382:16216-16235 | Msa1454710:intron | 35.0% | |
| ! | TTAAATTCCTGTGGTTCTAC+AGG | + | tig0035382:16262-16281 | Msa1454710:intron | 35.0% |
| TACAGGTGATAATTCTTGCA+AGG | + | tig0035382:16279-16298 | Msa1454710:intron | 35.0% | |
| ACAGGTGATAATTCTTGCAA+GGG | + | tig0035382:16280-16299 | Msa1454710:intron | 35.0% | |
| ATAATTCTTGCAAGGGAATC+TGG | + | tig0035382:16287-16306 | Msa1454710:CDS | 35.0% | |
| TTTCAACCGGAATATCAGAA+AGG | - | tig0035382:16325-16344 | None:intergenic | 35.0% | |
| GTTCTTACTCTTAATGGTTC+CGG | - | tig0035382:16356-16375 | None:intergenic | 35.0% | |
| ! | GAAAACTCCTCGTCAAATTT+TGG | - | tig0035382:16494-16513 | None:intergenic | 35.0% |
| ! | GTTTTCAAAGAGACAAGAAG+AGG | + | tig0035382:16508-16527 | Msa1454710:CDS | 35.0% |
| CTATGAAGAAAATGTCATGG+TGG | - | tig0035382:16597-16616 | None:intergenic | 35.0% | |
| !! | TTTGAAGGTATTGAGATACG+TGG | + | tig0035382:16643-16662 | Msa1454710:intron | 35.0% |
| !! | TTGAAGGTATTGAGATACGT+GGG | + | tig0035382:16644-16663 | Msa1454710:intron | 35.0% |
| GTAGACGTAACGAATCAAAA+GGG | + | tig0035382:16671-16690 | Msa1454710:CDS | 35.0% | |
| CATCCATTTGCACAATTATC+TGG | + | tig0035382:16725-16744 | Msa1454710:CDS | 35.0% | |
| AGCATTGCAGATTAACTACA+AGG | + | tig0035382:17019-17038 | Msa1454710:three_prime_UTR | 35.0% | |
| TGGATCACATTCACATTCAC+GGG | - | tig0035382:9516-9535 | None:intergenic | 40.0% | |
| GTGGATCACATTCACATTCA+CGG | - | tig0035382:9517-9536 | None:intergenic | 40.0% | |
| GGGAAATGGAGAAGAAAGAT+TGG | - | tig0035382:9539-9558 | None:intergenic | 40.0% | |
| AATCTTCTTCACATTCCCTC+AGG | + | tig0035382:9595-9614 | Msa1454710:CDS | 40.0% | |
| AGCTACCAAAAGGAGAAACA+TGG | + | tig0035382:9950-9969 | Msa1454710:CDS | 40.0% | |
| ! | ACTGACCATGTTTCTCCTTT+TGG | - | tig0035382:9958-9977 | None:intergenic | 40.0% |
| TGGTCAGTTCACAAATTTGG+TGG | + | tig0035382:9970-9989 | Msa1454710:CDS | 40.0% | |
| GATGTATGATCTCATCCACA+AGG | + | tig0035382:10104-10123 | Msa1454710:CDS | 40.0% | |
| ACGGCACAAGAATTGTTTGA+TGG | + | tig0035382:10189-10208 | Msa1454710:CDS | 40.0% | |
| ACGATCAAAGTAGAGCAACT+TGG | - | tig0035382:10922-10941 | None:intergenic | 40.0% | |
| !! | TACAGACACTAAGGCACTTT+TGG | - | tig0035382:10996-11015 | None:intergenic | 40.0% |
| ATGCACAAGTACACCAAAAC+AGG | - | tig0035382:11165-11184 | None:intergenic | 40.0% | |
| TCCCACAACTAAGTCAGTAA+AGG | - | tig0035382:11783-11802 | None:intergenic | 40.0% | |
| TAATCCAAAATTTGGCCGAG+AGG | - | tig0035382:11901-11920 | None:intergenic | 40.0% | |
| ! | TCGGCCAAATTTTGGATTAC+CGG | + | tig0035382:11902-11921 | Msa1454710:intron | 40.0% |
| CAGTCCGGTAATCCAAAATT+TGG | - | tig0035382:11909-11928 | None:intergenic | 40.0% | |
| TGATTTCCCTGAGAACCATA+GGG | + | tig0035382:11927-11946 | Msa1454710:intron | 40.0% | |
| TCTTAACCCTATGGTTCTCA+GGG | - | tig0035382:11936-11955 | None:intergenic | 40.0% | |
| ATCTTAACCCTATGGTTCTC+AGG | - | tig0035382:11937-11956 | None:intergenic | 40.0% | |
| TCCCTTTCTGCAAAGTAGAA+AGG | - | tig0035382:12003-12022 | None:intergenic | 40.0% | |
| CTTGTATCCATCCATTTGCA+GGG | - | tig0035382:12028-12047 | None:intergenic | 40.0% | |
| TCTTGTATCCATCCATTTGC+AGG | - | tig0035382:12029-12048 | None:intergenic | 40.0% | |
| CACGAGTAGGATTTACAATG+AGG | - | tig0035382:12057-12076 | None:intergenic | 40.0% | |
| GTAGCAATGACTACCTTAGA+TGG | - | tig0035382:12145-12164 | None:intergenic | 40.0% | |
| ! | TCTAAGGTAGTCATTGCTAC+TGG | + | tig0035382:12145-12164 | Msa1454710:CDS | 40.0% |
| !! | AGAGTAGTGGGAATGTTTTG+AGG | - | tig0035382:12187-12206 | None:intergenic | 40.0% |
| TGACTTCTCTGCAGCAATTA+TGG | + | tig0035382:12222-12241 | Msa1454710:CDS | 40.0% | |
| GACTTCTCTGCAGCAATTAT+GGG | + | tig0035382:12223-12242 | Msa1454710:CDS | 40.0% | |
| AATTATGGGCGCGATATTCA+GGG | + | tig0035382:12237-12256 | Msa1454710:CDS | 40.0% | |
| ACTATACACACCATCAACGT+CGG | - | tig0035382:12284-12303 | None:intergenic | 40.0% | |
| GAAGACACTGTCTTATCAAG+AGG | + | tig0035382:12559-12578 | Msa1454710:CDS | 40.0% | |
| ! | ACTGTCTTATCAAGAGGCAT+GGG | + | tig0035382:12565-12584 | Msa1454710:CDS | 40.0% |
| ATTAGTCCGGTTATTCGCTA+TGG | + | tig0035382:12718-12737 | Msa1454710:CDS | 40.0% | |
| ! | ATTTTCAACACCTCTGCTTC+TGG | + | tig0035382:12763-12782 | Msa1454710:CDS | 40.0% |
| ! | TTTTGTAGAACTGGAATGGC+TGG | + | tig0035382:13027-13046 | Msa1454710:intron | 40.0% |
| ! | TGCGCTAAAAATAGTACTGG+CGG | - | tig0035382:13064-13083 | None:intergenic | 40.0% |
| TTTAGCGCAGTAAAAGAGGT+TGG | + | tig0035382:13075-13094 | Msa1454710:CDS | 40.0% | |
| AACTGTGGATAAACAAGGGA+GGG | - | tig0035382:13151-13170 | None:intergenic | 40.0% | |
| TAACTGTGGATAAACAAGGG+AGG | - | tig0035382:13152-13171 | None:intergenic | 40.0% | |
| AGAAGTAAAAGCTGTAGCTG+AGG | + | tig0035382:13261-13280 | Msa1454710:CDS | 40.0% | |
| CTGAGCCAATGCATTGAAAA+GGG | - | tig0035382:13566-13585 | None:intergenic | 40.0% | |
| TCCCTTTCTTTAATGTCCAG+GGG | - | tig0035382:13734-13753 | None:intergenic | 40.0% | |
| GTTCCCTTTCTTTAATGTCC+AGG | - | tig0035382:13736-13755 | None:intergenic | 40.0% | |
| AACAACCTTGTGCTATAGCA+AGG | - | tig0035382:13975-13994 | None:intergenic | 40.0% | |
| TACTGTTGTTCTTAAGCGAG+AGG | + | tig0035382:14008-14027 | Msa1454710:CDS | 40.0% | |
| AGGATTCTATAAAGGCTCTG+CGG | + | tig0035382:14028-14047 | Msa1454710:CDS | 40.0% | |
| CACACTACTTGATCAGCTAA+GGG | + | tig0035382:14125-14144 | Msa1454710:CDS | 40.0% | |
| !! | TGAAAGCACTGAAAGAAGCA+CGG | - | tig0035382:14192-14211 | None:intergenic | 40.0% |
| TGTTTATGTAGGGATCCAAC+AGG | + | tig0035382:14268-14287 | Msa1454710:intron | 40.0% | |
| TCTGAATCCCTTGAATGCTA+AGG | + | tig0035382:14445-14464 | Msa1454710:intron | 40.0% | |
| TCGCCAATTTCTATCATCTC+TGG | - | tig0035382:14593-14612 | None:intergenic | 40.0% | |
| ! | CCCATTTCACTCGAACTTTT+TGG | + | tig0035382:14616-14635 | Msa1454710:intron | 40.0% |
| TCAGAGATTCACTGTGATCA+GGG | - | tig0035382:14654-14673 | None:intergenic | 40.0% | |
| ATCAGAGATTCACTGTGATC+AGG | - | tig0035382:14655-14674 | None:intergenic | 40.0% | |
| CTGATTATTAGATCTCCAGG+TGG | + | tig0035382:14670-14689 | Msa1454710:intron | 40.0% | |
| TGTGTTTGTTTCATTCCACC+TGG | - | tig0035382:14688-14707 | None:intergenic | 40.0% | |
| ACAGATGAATATCGAGGGTA+AGG | - | tig0035382:14741-14760 | None:intergenic | 40.0% | |
| TTTATATGCAGTGTGCATCC+TGG | + | tig0035382:14777-14796 | Msa1454710:intron | 40.0% | |
| GGCATCAGTTAACAAATTCC+AGG | - | tig0035382:14798-14817 | None:intergenic | 40.0% | |
| TAGAGCAGAGGTAATGCAAA+GGG | - | tig0035382:14819-14838 | None:intergenic | 40.0% | |
| ATAGAGCAGAGGTAATGCAA+AGG | - | tig0035382:14820-14839 | None:intergenic | 40.0% | |
| AAAGTGGAGAGAAATTCGAG+AGG | + | tig0035382:14912-14931 | Msa1454710:CDS | 40.0% | |
| CAGTCTACTAAAACCGTGTT+TGG | - | tig0035382:15000-15019 | None:intergenic | 40.0% | |
| TAGCAAGCCATTATGATGAC+TGG | + | tig0035382:15037-15056 | Msa1454710:CDS | 40.0% | |
| AAATTCAGGACCACTTAGTG+AGG | + | tig0035382:15101-15120 | Msa1454710:CDS | 40.0% | |
| ATCGCATTTACCTCACTAAG+TGG | - | tig0035382:15114-15133 | None:intergenic | 40.0% | |
| ACAACATTTGCCACTGACAT+GGG | - | tig0035382:15206-15225 | None:intergenic | 40.0% | |
| AACAACATTTGCCACTGACA+TGG | - | tig0035382:15207-15226 | None:intergenic | 40.0% | |
| ATGTCAGTGGCAAATGTTGT+TGG | + | tig0035382:15206-15225 | Msa1454710:intron | 40.0% | |
| GATGAGAAAGTCCCAAAAAG+AGG | - | tig0035382:15367-15386 | None:intergenic | 40.0% | |
| CCCTATGCTTCTAGTATTTG+AGG | + | tig0035382:15401-15420 | Msa1454710:intron | 40.0% | |
| TCCCATTATTGGCACTTTAC+GGG | + | tig0035382:15489-15508 | Msa1454710:CDS | 40.0% | |
| ! | TTTTGTCACCAGTTTCGAGA+AGG | - | tig0035382:15516-15535 | None:intergenic | 40.0% |
| !! | TGCAAATTGAAGGCATCTTC+AGG | + | tig0035382:15539-15558 | Msa1454710:CDS | 40.0% |
| CGATCCACAAAAAAGACAAG+TGG | - | tig0035382:15591-15610 | None:intergenic | 40.0% | |
| GTTATACTGAACCAGATCCA+AGG | + | tig0035382:15860-15879 | Msa1454710:CDS | 40.0% | |
| TGGAACTGATGTTGCAAGAA+AGG | + | tig0035382:15894-15913 | Msa1454710:CDS | 40.0% | |
| TCTTGGTTTATGATGGCTTC+TGG | + | tig0035382:16223-16242 | Msa1454710:intron | 40.0% | |
| ATTATCACCTGTAGAACCAC+AGG | - | tig0035382:16272-16291 | None:intergenic | 40.0% | |
| GCTAGACCTTTCTGATATTC+CGG | + | tig0035382:16316-16335 | Msa1454710:CDS | 40.0% | |
| GGTAGACGTAACGAATCAAA+AGG | + | tig0035382:16670-16689 | Msa1454710:CDS | 40.0% | |
| CGTAACGAATCAAAAGGGAA+TGG | + | tig0035382:16676-16695 | Msa1454710:CDS | 40.0% | |
| GAGCCAGATAATTGTGCAAA+TGG | - | tig0035382:16731-16750 | None:intergenic | 40.0% | |
| GGATCACATTCACATTCACG+GGG | - | tig0035382:9515-9534 | None:intergenic | 45.0% | |
| TGGAAAATGTGGACGGGAAA+TGG | - | tig0035382:9553-9572 | None:intergenic | 45.0% | |
| TTGTTGTGGCGTGGAAAATG+TGG | - | tig0035382:9564-9583 | None:intergenic | 45.0% | |
| TTCAGTGGATGTAGCTGTAG+AGG | + | tig0035382:9921-9940 | Msa1454710:CDS | 45.0% | |
| AGCTAGAGGAGTTTCTGTCT+TGG | + | tig0035382:11215-11234 | Msa1454710:intron | 45.0% | |
| CACACTTAATACCTTGCAGC+TGG | + | tig0035382:11743-11762 | Msa1454710:intron | 45.0% | |
| ! | ACTGACTTAGTTGTGGGACA+TGG | + | tig0035382:11785-11804 | Msa1454710:intron | 45.0% |
| CTGACTTAGTTGTGGGACAT+GGG | + | tig0035382:11786-11805 | Msa1454710:intron | 45.0% | |
| TGACTTAGTTGTGGGACATG+GGG | + | tig0035382:11787-11806 | Msa1454710:intron | 45.0% | |
| TCCGGACTTTACTTACCTCT+CGG | + | tig0035382:11883-11902 | Msa1454710:intron | 45.0% | |
| ! | CTTACCTCTCGGCCAAATTT+TGG | + | tig0035382:11894-11913 | Msa1454710:intron | 45.0% |
| CTGATTTCCCTGAGAACCAT+AGG | + | tig0035382:11926-11945 | Msa1454710:intron | 45.0% | |
| AGAAAGGGATTCCCTGCAAA+TGG | + | tig0035382:12014-12033 | Msa1454710:intron | 45.0% | |
| TCAACTTGATCAGCACGAGT+AGG | - | tig0035382:12070-12089 | None:intergenic | 45.0% | |
| CCATCTCTCTTGAGAGTAGT+GGG | - | tig0035382:12199-12218 | None:intergenic | 45.0% | |
| TCCATCTCTCTTGAGAGTAG+TGG | - | tig0035382:12200-12219 | None:intergenic | 45.0% | |
| CAATTATGGGCGCGATATTC+AGG | + | tig0035382:12236-12255 | Msa1454710:CDS | 45.0% | |
| TGTGCTCGTTTAACCATCAG+TGG | + | tig0035382:12342-12361 | Msa1454710:intron | 45.0% | |
| CACTGTCTTATCAAGAGGCA+TGG | + | tig0035382:12564-12583 | Msa1454710:CDS | 45.0% | |
| ! | TTATCAAGAGGCATGGGAGA+TGG | + | tig0035382:12571-12590 | Msa1454710:CDS | 45.0% |
| GTAAGTTGCACACTGGATAG+TGG | + | tig0035382:12593-12612 | Msa1454710:intron | 45.0% | |
| ACATCCACGCACAATTAGTC+CGG | + | tig0035382:12705-12724 | Msa1454710:CDS | 45.0% | |
| ATAACCGGACTAATTGTGCG+TGG | - | tig0035382:12712-12731 | None:intergenic | 45.0% | |
| GGTATGCCATAGCGAATAAC+CGG | - | tig0035382:12727-12746 | None:intergenic | 45.0% | |
| !! | AAAATAGTACTGGCGGTACC+TGG | - | tig0035382:13057-13076 | None:intergenic | 45.0% |
| AAAAGCTGTAGCTGAGGTGT+TGG | + | tig0035382:13267-13286 | Msa1454710:CDS | 45.0% | |
| !! | TTTGACAGCGCTTTGTTTGC+TGG | + | tig0035382:13298-13317 | Msa1454710:CDS | 45.0% |
| !! | TTGACAGCGCTTTGTTTGCT+GGG | + | tig0035382:13299-13318 | Msa1454710:CDS | 45.0% |
| AATGACTGCAACCTGAGAAG+TGG | - | tig0035382:13479-13498 | None:intergenic | 45.0% | |
| !!! | TGCAGTATTTTGGCAGCTGT+TGG | + | tig0035382:13505-13524 | Msa1454710:CDS | 45.0% |
| !!! | CTGGAGTACTTGCCATTTTC+TGG | - | tig0035382:13531-13550 | None:intergenic | 45.0% |
| CAGAAAATGGCAAGTACTCC+AGG | + | tig0035382:13529-13548 | Msa1454710:CDS | 45.0% | |
| AGCCAATGCATTGAAAAGGG+TGG | - | tig0035382:13563-13582 | None:intergenic | 45.0% | |
| CCTGAGCCAATGCATTGAAA+AGG | - | tig0035382:13567-13586 | None:intergenic | 45.0% | |
| !!! | CCTTTTCAATGCATTGGCTC+AGG | + | tig0035382:13564-13583 | Msa1454710:CDS | 45.0% |
| TTTCTTTAATGTCCAGGGGC+TGG | - | tig0035382:13730-13749 | None:intergenic | 45.0% | |
| AGCCCCTGGACATTAAAGAA+AGG | + | tig0035382:13729-13748 | Msa1454710:intron | 45.0% | |
| GCCCCTGGACATTAAAGAAA+GGG | + | tig0035382:13730-13749 | Msa1454710:intron | 45.0% | |
| GGATTCTATAAAGGCTCTGC+GGG | + | tig0035382:14029-14048 | Msa1454710:CDS | 45.0% | |
| TCACAAACCACCATGGCAAT+GGG | + | tig0035382:14075-14094 | Msa1454710:CDS | 45.0% | |
| AATTATGCCCATTGCCATGG+TGG | - | tig0035382:14085-14104 | None:intergenic | 45.0% | |
| ACCATGGCAATGGGCATAAT+TGG | + | tig0035382:14084-14103 | Msa1454710:CDS | 45.0% | |
| TCCAATTATGCCCATTGCCA+TGG | - | tig0035382:14088-14107 | None:intergenic | 45.0% | |
| AGTGTGCTCCCAATTAATCC+AGG | - | tig0035382:14111-14130 | None:intergenic | 45.0% | |
| GCACACTACTTGATCAGCTA+AGG | + | tig0035382:14124-14143 | Msa1454710:CDS | 45.0% | |
| ACTTGATCAGCTAAGGGATC+AGG | + | tig0035382:14131-14150 | Msa1454710:CDS | 45.0% | |
| TAGGGATCCAACAGGCATAA+TGG | + | tig0035382:14276-14295 | Msa1454710:intron | 45.0% | |
| ! | TTTGCGTGTAATGGGGATCA+TGG | + | tig0035382:14375-14394 | Msa1454710:CDS | 45.0% |
| ! | TTGCGTGTAATGGGGATCAT+GGG | + | tig0035382:14376-14395 | Msa1454710:CDS | 45.0% |
| ! | GGGGAATCGACTTAGTAAAG+TGG | + | tig0035382:14896-14915 | Msa1454710:intron | 45.0% |
| TCGAGAGGAAAAAGGTGAAG+CGG | + | tig0035382:14927-14946 | Msa1454710:CDS | 45.0% | |
| AAAAGGTGAAGCGGCTGATT+TGG | + | tig0035382:14936-14955 | Msa1454710:CDS | 45.0% | |
| TGCGCAACCAGTCATCATAA+TGG | - | tig0035382:15047-15066 | None:intergenic | 45.0% | |
| ! | TTATGATGACTGGTTGCGCA+AGG | + | tig0035382:15047-15066 | Msa1454710:CDS | 45.0% |
| ! | TATGATGACTGGTTGCGCAA+GGG | + | tig0035382:15048-15067 | Msa1454710:CDS | 45.0% |
| TTAAGGAGATCCCATGTCAG+TGG | + | tig0035382:15193-15212 | Msa1454710:intron | 45.0% | |
| TGAGGTTGAGAGCTCTTCAA+AGG | + | tig0035382:15419-15438 | Msa1454710:CDS | 45.0% | |
| TATGAAGCTACTGTTGGAGC+CGG | + | tig0035382:15463-15482 | Msa1454710:CDS | 45.0% | |
| ! | AGTGCCAATAATGGGAAGAC+CGG | - | tig0035382:15485-15504 | None:intergenic | 45.0% |
| ! | CCCCGTAAAGTGCCAATAAT+GGG | - | tig0035382:15493-15512 | None:intergenic | 45.0% |
| CCCATTATTGGCACTTTACG+GGG | + | tig0035382:15490-15509 | Msa1454710:CDS | 45.0% | |
| ! | GAAAGGTGTGGATAGACAGT+TGG | - | tig0035382:15644-15663 | None:intergenic | 45.0% |
| CACACCTTTCCATCTCTGAA+GGG | + | tig0035382:15654-15673 | Msa1454710:intron | 45.0% | |
| TTGTCCCTTCAGAGATGGAA+AGG | - | tig0035382:15661-15680 | None:intergenic | 45.0% | |
| TGAGGTAGTTGCTGAAGCAA+AGG | + | tig0035382:15831-15850 | Msa1454710:CDS | 45.0% | |
| TCCGGTTGAAAATCTTGTGC+CGG | + | tig0035382:16334-16353 | Msa1454710:CDS | 45.0% | |
| ! | TCCGGCACAAGATTTTCAAC+CGG | - | tig0035382:16338-16357 | None:intergenic | 45.0% |
| CGAGCTACGAAGATACAAGA+AGG | + | tig0035382:16700-16719 | Msa1454710:CDS | 45.0% | |
| TATCAGCCTCTGATAGTTCG+TGG | + | tig0035382:16788-16807 | Msa1454710:CDS | 45.0% | |
| TTACGACTTGCCTCGTATCT+TGG | + | tig0035382:16860-16879 | Msa1454710:CDS | 45.0% | |
| CTCACTCACTCACTGCCAAA+TGG | + | tig0035382:9473-9492 | Msa1454710:exon | 50.0% | |
| TGTGGCGTGGAAAATGTGGA+CGG | - | tig0035382:9560-9579 | None:intergenic | 50.0% | |
| AAGGTGAAGTTGTTGTGGCG+TGG | - | tig0035382:9573-9592 | None:intergenic | 50.0% | |
| CTTGGTGAGACTTTCCTCCA+TGG | - | tig0035382:9770-9789 | None:intergenic | 50.0% | |
| TATCCTGAGCTTCAGCCTTG+TGG | - | tig0035382:10122-10141 | None:intergenic | 50.0% | |
| ACAGACATGTGCAGTTGACG+TGG | + | tig0035382:11388-11407 | Msa1454710:intron | 50.0% | |
| GCCGAGAGGTAAGTAAAGTC+CGG | - | tig0035382:11887-11906 | None:intergenic | 50.0% | |
| GGTTCTCAGGGAAATCAGTC+CGG | - | tig0035382:11924-11943 | None:intergenic | 50.0% | |
| AGGGATTCCCTGCAAATGGA+TGG | + | tig0035382:12018-12037 | Msa1454710:intron | 50.0% | |
| CCCACTACTCTCAAGAGAGA+TGG | + | tig0035382:12196-12215 | Msa1454710:CDS | 50.0% | |
| GGAGATGGTAAGTTGCACAC+TGG | + | tig0035382:12586-12605 | Msa1454710:intron | 50.0% | |
| GATCTTGGTTCCAGAAGCAG+AGG | - | tig0035382:12776-12795 | None:intergenic | 50.0% | |
| GGGAGGGAAACAACAAAAGC+TGG | - | tig0035382:13135-13154 | None:intergenic | 50.0% | |
| ! | GTTTGCTGGGCGTATTTCTC+AGG | + | tig0035382:13312-13331 | Msa1454710:CDS | 50.0% |
| ! | CGCCACCCTTTTCAATGCAT+TGG | + | tig0035382:13558-13577 | Msa1454710:CDS | 50.0% |
| CTCACAAACCACCATGGCAA+TGG | + | tig0035382:14074-14093 | Msa1454710:CDS | 50.0% | |
| GCAATGGGCATAATTGGACC+TGG | + | tig0035382:14090-14109 | Msa1454710:CDS | 50.0% | |
| ! | GCCCCGTAAAGTGCCAATAA+TGG | - | tig0035382:15494-15513 | None:intergenic | 50.0% |
| CCTTCAGAGATGGAAAGGTG+TGG | - | tig0035382:15656-15675 | None:intergenic | 50.0% | |
| CCACACCTTTCCATCTCTGA+AGG | + | tig0035382:15653-15672 | Msa1454710:intron | 50.0% | |
| !!! | GGATGGCCGAGTTTTTAGTG+AGG | + | tig0035382:15813-15832 | Msa1454710:CDS | 50.0% |
| GTTGCTGAAGCAAAGGAAGC+AGG | + | tig0035382:15838-15857 | Msa1454710:CDS | 50.0% | |
| GACAGATCATCCCTTGGATC+TGG | - | tig0035382:15874-15893 | None:intergenic | 50.0% | |
| GATCCAAGGGATGATCTGTC+TGG | + | tig0035382:15874-15893 | Msa1454710:CDS | 50.0% | |
| GTTCCAGACAGATCATCCCT+TGG | - | tig0035382:15880-15899 | None:intergenic | 50.0% | |
| ! | GGTATTGAGATACGTGGGAG+TGG | + | tig0035382:16649-16668 | Msa1454710:intron | 50.0% |
| GTGGCGTGGAAAATGTGGAC+GGG | - | tig0035382:9559-9578 | None:intergenic | 55.0% | |
| CATCCACAAGGCTGAAGCTC+AGG | + | tig0035382:10116-10135 | Msa1454710:CDS | 55.0% | |
| CTGTAGCATGACCAGCTGCA+AGG | - | tig0035382:11757-11776 | None:intergenic | 55.0% | |
| ACCATCTGGACCGACGTTGA+TGG | + | tig0035382:12271-12290 | Msa1454710:CDS | 55.0% | |
| ACCATCAACGTCGGTCCAGA+TGG | - | tig0035382:12275-12294 | None:intergenic | 55.0% | |
| ACTGGAATGGCTGGTGTTCC+AGG | + | tig0035382:13036-13055 | Msa1454710:CDS | 55.0% | |
| GGCAGCTGTTGGCCAGAAAA+TGG | + | tig0035382:13516-13535 | Msa1454710:CDS | 55.0% | |
| AAAAGGGTGGCGCTAACTCC+TGG | - | tig0035382:13550-13569 | None:intergenic | 55.0% | |
| CGGGAAGCCATTATGCCTGT+TGG | - | tig0035382:14286-14305 | None:intergenic | 55.0% | |
| GGAGCCGGTCTTCCCATTAT+TGG | + | tig0035382:15478-15497 | Msa1454710:CDS | 55.0% | |
| TTACGGGGCCTTCTCGAAAC+TGG | + | tig0035382:15505-15524 | Msa1454710:CDS | 55.0% | |
| CAAGAAGAGGCTGACACTGC+TGG | + | tig0035382:16521-16540 | Msa1454710:CDS | 55.0% | |
| CCTGGTCCACGAACTATCAG+AGG | - | tig0035382:16797-16816 | None:intergenic | 55.0% | |
| CCTCTGATAGTTCGTGGACC+AGG | + | tig0035382:16794-16813 | Msa1454710:CDS | 55.0% | |
| ATAGTTCGTGGACCAGGAGC+TGG | + | tig0035382:16800-16819 | Msa1454710:CDS | 55.0% | |
| ! | AGACGGAGCACCAAGATACG+AGG | - | tig0035382:16873-16892 | None:intergenic | 55.0% |
| TTGTGGGACATGGGGAGCTG+TGG | + | tig0035382:11795-11814 | Msa1454710:intron | 60.0% | |
| GGGCTCGTCAAGTCACCATC+TGG | + | tig0035382:12257-12276 | Msa1454710:CDS | 60.0% | |
| ! | GTGACTTGTGCACCAGCTCC+TGG | - | tig0035382:16815-16834 | None:intergenic | 60.0% |
| GCTGGTGCACAAGTCACAGC+TGG | + | tig0035382:16818-16837 | Msa1454710:CDS | 60.0% | |
| GGTGCACAAGTCACAGCTGG+TGG | + | tig0035382:16821-16840 | Msa1454710:CDS | 60.0% | |
| !! | CGATGGGCTATACCAGCCCC+TGG | + | tig0035382:13715-13734 | Msa1454710:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0035382 | gene | 9428 | 17142 | 9428 | ID=Msa1454710;Name=Msa1454710 |
| tig0035382 | mRNA | 9428 | 17142 | 9428 | ID=Msa1454710-mRNA-1;Parent=Msa1454710;Name=Msa1454710-mRNA-1;_AED=0.14;_eAED=0.14;_QI=64|0.93|0.88|1|1|1|17|247|847 |
| tig0035382 | exon | 9428 | 9616 | 9428 | ID=Msa1454710-mRNA-1:exon:19895;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 9763 | 9815 | 9763 | ID=Msa1454710-mRNA-1:exon:19896;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 9917 | 10232 | 9917 | ID=Msa1454710-mRNA-1:exon:19897;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 12048 | 12319 | 12048 | ID=Msa1454710-mRNA-1:exon:19898;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 12540 | 12592 | 12540 | ID=Msa1454710-mRNA-1:exon:19899;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 12682 | 12896 | 12682 | ID=Msa1454710-mRNA-1:exon:19900;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 13035 | 13122 | 13035 | ID=Msa1454710-mRNA-1:exon:19901;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 13220 | 13333 | 13220 | ID=Msa1454710-mRNA-1:exon:19902;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 13487 | 13585 | 13487 | ID=Msa1454710-mRNA-1:exon:19903;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 13958 | 14152 | 13958 | ID=Msa1454710-mRNA-1:exon:19904;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 14343 | 14425 | 14343 | ID=Msa1454710-mRNA-1:exon:19905;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 14897 | 15122 | 14897 | ID=Msa1454710-mRNA-1:exon:19906;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 15415 | 15560 | 15415 | ID=Msa1454710-mRNA-1:exon:19907;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 15780 | 15915 | 15780 | ID=Msa1454710-mRNA-1:exon:19908;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 16284 | 16367 | 16284 | ID=Msa1454710-mRNA-1:exon:19909;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 16455 | 16547 | 16455 | ID=Msa1454710-mRNA-1:exon:19910;Parent=Msa1454710-mRNA-1 |
| tig0035382 | exon | 16650 | 17142 | 16650 | ID=Msa1454710-mRNA-1:exon:19911;Parent=Msa1454710-mRNA-1 |
| tig0035382 | five_prime_UTR | 9428 | 9491 | 9428 | ID=Msa1454710-mRNA-1:five_prime_utr;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 9492 | 9616 | 9492 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 9763 | 9815 | 9763 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 9917 | 10232 | 9917 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 12048 | 12319 | 12048 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 12540 | 12592 | 12540 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 12682 | 12896 | 12682 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 13035 | 13122 | 13035 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 13220 | 13333 | 13220 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 13487 | 13585 | 13487 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 13958 | 14152 | 13958 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 14343 | 14425 | 14343 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 14897 | 15122 | 14897 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 15415 | 15560 | 15415 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 15780 | 15915 | 15780 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 16284 | 16367 | 16284 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 16455 | 16547 | 16455 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | CDS | 16650 | 16895 | 16650 | ID=Msa1454710-mRNA-1:cds;Parent=Msa1454710-mRNA-1 |
| tig0035382 | three_prime_UTR | 16896 | 17142 | 16896 | ID=Msa1454710-mRNA-1:three_prime_utr;Parent=Msa1454710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
