Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456400 | XP_013450684.1 | 84.431 | 334 | 13 | 2 | 1 | 297 | 1 | 332 | 0.0 | 551 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456400 | sp|B9SEZ6|EFTS_RICCO | 60.000 | 365 | 78 | 3 | 1 | 297 | 1 | 365 | 1.25e-142 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456400 | A0A072U4T1 | 84.431 | 334 | 13 | 2 | 1 | 297 | 1 | 332 | 0.0 | 551 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1136880 | Msa1456400 | 0.804197 | 2.424543e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456400 | MtrunA17_Chr6g0448841 | 84.431 | 334 | 13 | 2 | 1 | 297 | 1 | 332 | 0.0 | 551 |
| Msa1456400 | MtrunA17_Chr6g0486531 | 48.276 | 87 | 44 | 1 | 32 | 117 | 853 | 939 | 2.48e-16 | 79.3 |
| Msa1456400 | MtrunA17_Chr6g0486531 | 43.564 | 101 | 56 | 1 | 18 | 117 | 598 | 698 | 1.15e-15 | 77.4 |
| Msa1456400 | MtrunA17_Chr6g0486531 | 29.560 | 159 | 94 | 6 | 146 | 297 | 660 | 807 | 6.28e-13 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1456400 | AT4G11120.1 | 63.141 | 312 | 73 | 1 | 28 | 297 | 72 | 383 | 8.52e-138 | 395 |
| Msa1456400 | AT4G29060.2 | 51.163 | 86 | 41 | 1 | 33 | 117 | 523 | 608 | 1.91e-17 | 83.2 |
| Msa1456400 | AT4G29060.1 | 51.163 | 86 | 41 | 1 | 33 | 117 | 523 | 608 | 2.43e-17 | 82.8 |
| Msa1456400 | AT4G29060.1 | 47.368 | 95 | 49 | 1 | 33 | 126 | 761 | 855 | 5.31e-17 | 81.6 |
| Msa1456400 | AT4G29060.1 | 25.974 | 154 | 106 | 3 | 146 | 297 | 570 | 717 | 1.90e-11 | 65.1 |
Find 68 sgRNAs with CRISPR-Local
Find 400 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGTTGAAAGATGTCATTTC+TGG | 0.205279 | tig0037246:-19099 | None:intergenic |
| AGCGGCTTTCACGTCCTTAA+TGG | 0.242559 | tig0037246:-18904 | None:intergenic |
| CTTTGAAAATGTTGTGCTTA+TGG | 0.244964 | tig0037246:+21184 | Msa1456400:CDS |
| AACAAAGGAACTTGTGTCTT+TGG | 0.272170 | tig0037246:+20277 | Msa1456400:CDS |
| AGTTCCTTTGTTAAGAATAA+TGG | 0.280027 | tig0037246:-20266 | None:intergenic |
| TACGGATGAACCCACCTCTT+TGG | 0.288259 | tig0037246:-24161 | None:intergenic |
| TTAGGTTTGGGTCGCATTGC+TGG | 0.309704 | tig0037246:+20149 | Msa1456400:intron |
| TATCATTAATAACAAACTTT+TGG | 0.309796 | tig0037246:-21208 | None:intergenic |
| AAATGACATCTTTCAACATT+TGG | 0.335048 | tig0037246:+19103 | Msa1456400:CDS |
| ACCTTCAACCATTCTGTCTA+TGG | 0.338970 | tig0037246:-21147 | None:intergenic |
| AAGAACAAGCGCTCCCATTA+AGG | 0.341980 | tig0037246:+18890 | Msa1456400:CDS |
| TGTCTCTTTGCAGGAGGTGC+TGG | 0.369227 | tig0037246:+24129 | Msa1456400:intron |
| ATCTTATCTCTTGAAGTTGA+TGG | 0.381841 | tig0037246:+20173 | Msa1456400:CDS |
| GCGGCTTTCACGTCCTTAAT+GGG | 0.382230 | tig0037246:-18903 | None:intergenic |
| TCAACGTGTTGGATCAGAAT+TGG | 0.389217 | tig0037246:+20220 | Msa1456400:CDS |
| CGCTCTCGTCGATTCCAATT+GGG | 0.393868 | tig0037246:+18923 | Msa1456400:CDS |
| CCGCTCTCGTCGATTCCAAT+TGG | 0.397858 | tig0037246:+18922 | Msa1456400:CDS |
| AGCGGTTCGAGATGATTTCT+TGG | 0.412539 | tig0037246:-18997 | None:intergenic |
| AGCTGCTTCTAAATCCCAAT+TGG | 0.417167 | tig0037246:-18937 | None:intergenic |
| GCTTTCTCAGAATGGAAGTT+GGG | 0.418439 | tig0037246:+24194 | Msa1456400:CDS |
| CACTGAAGTAGCTGCTATCA+TGG | 0.436998 | tig0037246:+19351 | Msa1456400:CDS |
| GTGATGCACGCACCATCTAA+TGG | 0.439679 | tig0037246:+19403 | Msa1456400:CDS |
| ATATTTCAGGCAGAAGCCTC+TGG | 0.446318 | tig0037246:+21110 | Msa1456400:intron |
| GGTTGTAAGCTTTCTCAGAA+TGG | 0.446907 | tig0037246:+24186 | Msa1456400:CDS |
| TAGGTTTGGGTCGCATTGCT+GGG | 0.464264 | tig0037246:+20150 | Msa1456400:intron |
| ACGTGAAATTCTTAAATCTC+AGG | 0.465929 | tig0037246:+20316 | Msa1456400:CDS |
| AGCTTTCTCAGAATGGAAGT+TGG | 0.497230 | tig0037246:+24193 | Msa1456400:CDS |
| GTAGATACAAGACCATTAGA+TGG | 0.500024 | tig0037246:-19415 | None:intergenic |
| AGCGAGAGCGAGTAAACCTT+CGG | 0.503696 | tig0037246:-19021 | None:intergenic |
| TCAGAAGGAACTCAGAAAGA+AGG | 0.504159 | tig0037246:+18959 | Msa1456400:CDS |
| GAGAAAGCTTACAACCCTTA+CGG | 0.513891 | tig0037246:-24179 | None:intergenic |
| GGCTACTCTGCTTAAACCCA+TGG | 0.524468 | tig0037246:-18772 | None:intergenic |
| ATTCTGTCTATGGCCTTCTG+AGG | 0.525528 | tig0037246:-21137 | None:intergenic |
| GGATTTAGAAGCAGCTCAGA+AGG | 0.526570 | tig0037246:+18944 | Msa1456400:CDS |
| GAGCAGTTAGTTACCAGGTA+GGG | 0.530487 | tig0037246:-19455 | None:intergenic |
| CAGAAGGAACTCAGAAAGAA+GGG | 0.532376 | tig0037246:+18960 | Msa1456400:CDS |
| TCATCTCGAACCGCTTCCGA+AGG | 0.538366 | tig0037246:+19005 | Msa1456400:CDS |
| TTTCATGCACAGACGTCTGC+CGG | 0.538625 | tig0037246:-18793 | None:intergenic |
| AAGAGGTGGGTTCATCCGTA+AGG | 0.540458 | tig0037246:+24164 | Msa1456400:CDS |
| GCAGATGCACTTCAACGTGT+TGG | 0.542478 | tig0037246:+20209 | Msa1456400:CDS |
| AGCAGTTAGTTACCAGGTAG+GGG | 0.545098 | tig0037246:-19454 | None:intergenic |
| AGCGAGTAAACCTTCGGAAG+CGG | 0.545132 | tig0037246:-19015 | None:intergenic |
| CTTCATACCAGTCCCCTACC+TGG | 0.545935 | tig0037246:+19442 | Msa1456400:CDS |
| TGAGCAGTTAGTTACCAGGT+AGG | 0.553038 | tig0037246:-19456 | None:intergenic |
| GCCATAGACAGAATGGTTGA+AGG | 0.553039 | tig0037246:+21146 | Msa1456400:CDS |
| ATGGGTTTAAGCAGAGTAGC+CGG | 0.567814 | tig0037246:+18774 | Msa1456400:CDS |
| GCAATTGAGTTCAACGAGAG+CGG | 0.568794 | tig0037246:-19060 | None:intergenic |
| AGCCTCTGGTAAACCTCAGA+AGG | 0.569054 | tig0037246:+21124 | Msa1456400:CDS |
| CTCAGAATGGAAGTTGGGGA+AGG | 0.569708 | tig0037246:+24199 | Msa1456400:CDS |
| GAGAATGTGAAGCTAAGAAG+AGG | 0.570254 | tig0037246:+19376 | Msa1456400:CDS |
| TAATTATTCAACATCATCTA+CGG | 0.571714 | tig0037246:+18830 | Msa1456400:CDS |
| TCAGAAGGCCATAGACAGAA+TGG | 0.584037 | tig0037246:+21139 | Msa1456400:CDS |
| GGATAATCTATCCAAAGAGG+TGG | 0.587087 | tig0037246:+24150 | Msa1456400:CDS |
| AAAACCATTATTCTTAACAA+AGG | 0.588617 | tig0037246:+20262 | Msa1456400:CDS |
| TTAGTTACCAGGTAGGGGAC+TGG | 0.588627 | tig0037246:-19449 | None:intergenic |
| ACTGAAGTAGCTGCTATCAT+GGG | 0.593572 | tig0037246:+19352 | Msa1456400:CDS |
| TAATGATACTATAAAAGTGA+AGG | 0.594087 | tig0037246:+21223 | Msa1456400:CDS |
| CTTTCTCAGAATGGAAGTTG+GGG | 0.602536 | tig0037246:+24195 | Msa1456400:CDS |
| AGAATTGGCCATGCATGTAG+TGG | 0.606879 | tig0037246:+20235 | Msa1456400:CDS |
| GGCCTTCTGAGGTTTACCAG+AGG | 0.611160 | tig0037246:-21126 | None:intergenic |
| CCAATTGGAATCGACGAGAG+CGG | 0.611818 | tig0037246:-18922 | None:intergenic |
| TTATCTCTTGAAGTTGATGG+TGG | 0.619105 | tig0037246:+20176 | Msa1456400:CDS |
| AGATGATGTTGAATAATTAG+CGG | 0.628468 | tig0037246:-18826 | None:intergenic |
| AGAGGTGGGTTCATCCGTAA+GGG | 0.632469 | tig0037246:+24165 | Msa1456400:CDS |
| GATAATCTATCCAAAGAGGT+GGG | 0.662257 | tig0037246:+24151 | Msa1456400:CDS |
| GCTGGATAATCTATCCAAAG+AGG | 0.672392 | tig0037246:+24147 | Msa1456400:CDS |
| TGATGTTGAATAATTAGCGG+CGG | 0.683012 | tig0037246:-18823 | None:intergenic |
| AAGTTGGGGAAGGAATTGCA+AGG | 0.699483 | tig0037246:+24209 | Msa1456400:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACTTCATATATAATATATA+GGG | - | tig0037246:21916-21935 | None:intergenic | 10.0% |
| !! | TAACTTCATATATAATATAT+AGG | - | tig0037246:21917-21936 | None:intergenic | 10.0% |
| !!! | TTGTTTTTTTTTTTTTTTTG+AGG | - | tig0037246:22104-22123 | None:intergenic | 10.0% |
| !! | ATAATACTGAATTTATTTAA+TGG | - | tig0037246:23506-23525 | None:intergenic | 10.0% |
| !!! | TAATTTAACTCTTTTTCAAA+TGG | + | tig0037246:19524-19543 | Msa1456400:intron | 15.0% |
| !! | ATTATGAATCATAATTATTG+TGG | + | tig0037246:20416-20435 | Msa1456400:intron | 15.0% |
| !! | TTCTTAAAGATCATAATTAA+TGG | - | tig0037246:20458-20477 | None:intergenic | 15.0% |
| !!! | TATCATTAATAACAAACTTT+TGG | - | tig0037246:21211-21230 | None:intergenic | 15.0% |
| !! | AATGAAATTAAAAAGTGAAA+GGG | - | tig0037246:21402-21421 | None:intergenic | 15.0% |
| !! | AAATGAAATTAAAAAGTGAA+AGG | - | tig0037246:21403-21422 | None:intergenic | 15.0% |
| !! | AATGAAATTAAAAAGTGAAA+GGG | - | tig0037246:21402-21421 | None:intergenic | 15.0% |
| !! | AAATGAAATTAAAAAGTGAA+AGG | - | tig0037246:21403-21422 | None:intergenic | 15.0% |
| !! | AATGAAATTAAAAAGTGAAA+GGG | - | tig0037246:21402-21421 | None:intergenic | 15.0% |
| !! | AAATGAAATTAAAAAGTGAA+AGG | - | tig0037246:21403-21422 | None:intergenic | 15.0% |
| !! | ACTTCATATATAATATATAG+GGG | - | tig0037246:21915-21934 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTGAGGAT+TGG | - | tig0037246:22099-22118 | None:intergenic | 15.0% |
| !! | AAGGAATAAAAAATAAGAAT+TGG | + | tig0037246:23109-23128 | Msa1456400:intron | 15.0% |
| !! | AGGAATAAAAAATAAGAATT+GGG | + | tig0037246:23110-23129 | Msa1456400:intron | 15.0% |
| !!! | TGCTATTTATAATATATGTA+TGG | + | tig0037246:24029-24048 | Msa1456400:intron | 15.0% |
| !! | TAATTATTCAACATCATCTA+CGG | + | tig0037246:18830-18849 | Msa1456400:CDS | 20.0% |
| !! | AAAGAGTTGAATAATGAATT+GGG | - | tig0037246:19585-19604 | None:intergenic | 20.0% |
| !! | AAAAGAGTTGAATAATGAAT+TGG | - | tig0037246:19586-19605 | None:intergenic | 20.0% |
| !! | ACCTATAATAGAAAAAATGA+TGG | + | tig0037246:19606-19625 | Msa1456400:intron | 20.0% |
| !!! | TCCATCATTTTTTCTATTAT+AGG | - | tig0037246:19610-19629 | None:intergenic | 20.0% |
| !!! | TTTCTCTAAAAAGTTTTTCT+AGG | - | tig0037246:19738-19757 | None:intergenic | 20.0% |
| !! | TGTTGTTGCTAATAAAATTT+AGG | + | tig0037246:19875-19894 | Msa1456400:intron | 20.0% |
| !! | GTTGTTGCTAATAAAATTTA+GGG | + | tig0037246:19876-19895 | Msa1456400:intron | 20.0% |
| !! | AAAACCATTATTCTTAACAA+AGG | + | tig0037246:20262-20281 | Msa1456400:CDS | 20.0% |
| !!! | TTCTTATTATTCAAGTTTAG+AGG | + | tig0037246:20570-20589 | Msa1456400:intron | 20.0% |
| !!! | TCTTATTATTCAAGTTTAGA+GGG | + | tig0037246:20571-20590 | Msa1456400:intron | 20.0% |
| !! | CTGAAATATAAAAACCAAAA+CGG | - | tig0037246:21099-21118 | None:intergenic | 20.0% |
| !! | TAATGATACTATAAAAGTGA+AGG | + | tig0037246:21223-21242 | Msa1456400:CDS | 20.0% |
| !! | TATGATAATTGATATTACGA+TGG | + | tig0037246:21288-21307 | Msa1456400:intron | 20.0% |
| !! | ATGAAATTAAAAAGTGAAAG+GGG | - | tig0037246:21401-21420 | None:intergenic | 20.0% |
| !!! | CCATAAAATGTTATTTTGAT+CGG | + | tig0037246:21499-21518 | Msa1456400:intron | 20.0% |
| !! | ATGAAATTAAAAAGTGAAAG+GGG | - | tig0037246:21401-21420 | None:intergenic | 20.0% |
| !!! | CCATAAAATGTTATTTTGAT+CGG | + | tig0037246:21499-21518 | Msa1456400:intron | 20.0% |
| !! | ATGAAATTAAAAAGTGAAAG+GGG | - | tig0037246:21401-21420 | None:intergenic | 20.0% |
| !! | AAAAAATCATAGAAACCAAA+AGG | - | tig0037246:21826-21845 | None:intergenic | 20.0% |
| !! | CTTCATATATAATATATAGG+GGG | - | tig0037246:21914-21933 | None:intergenic | 20.0% |
| !! | TAGAAATACAATAAAAGAGA+AGG | - | tig0037246:23255-23274 | None:intergenic | 20.0% |
| !!! | TTTATTTAATTAGTCTCTGA+AGG | - | tig0037246:23311-23330 | None:intergenic | 20.0% |
| !! | TTCAGAGACTAATTAAATAA+AGG | + | tig0037246:23310-23329 | Msa1456400:intron | 20.0% |
| !!! | AAGACAAAATTTCTTTTTGT+GGG | + | tig0037246:23442-23461 | Msa1456400:intron | 20.0% |
| !! | ATCATCTATGTATAGTTATA+TGG | + | tig0037246:23959-23978 | Msa1456400:intron | 20.0% |
| !!! | ATATTATAAATAGCACGTTT+TGG | - | tig0037246:24024-24043 | None:intergenic | 20.0% |
| !! | GAATGAGCAAATAAAAAAAT+CGG | - | tig0037246:24091-24110 | None:intergenic | 20.0% |
| ! | AGATGATGTTGAATAATTAG+CGG | - | tig0037246:18829-18848 | None:intergenic | 25.0% |
| ! | AAATGACATCTTTCAACATT+TGG | + | tig0037246:19103-19122 | Msa1456400:CDS | 25.0% |
| ! | TCTAACTTAAACCTATGATT+TGG | + | tig0037246:19549-19568 | Msa1456400:intron | 25.0% |
| ! | AAGAGTTGAATAATGAATTG+GGG | - | tig0037246:19584-19603 | None:intergenic | 25.0% |
| !! | TAGTTTATGATAGAGCATTA+TGG | + | tig0037246:19800-19819 | Msa1456400:intron | 25.0% |
| !! | TTGCTAATAAAATTTAGGGT+GGG | + | tig0037246:19880-19899 | Msa1456400:intron | 25.0% |
| ! | AGTTCCTTTGTTAAGAATAA+TGG | - | tig0037246:20269-20288 | None:intergenic | 25.0% |
| ! | AATTCTTAAATCTCAGGTAT+TGG | + | tig0037246:20322-20341 | Msa1456400:intron | 25.0% |
| ! | CATAATTTCATATACTTGCA+TGG | - | tig0037246:20402-20421 | None:intergenic | 25.0% |
| ! | TAGAATGAATGATTGCTTAT+CGG | + | tig0037246:20527-20546 | Msa1456400:intron | 25.0% |
| !! | CTTATTATTCAAGTTTAGAG+GGG | + | tig0037246:20572-20591 | Msa1456400:intron | 25.0% |
| !!! | TATATTCTGTTTCTACAATG+TGG | - | tig0037246:21060-21079 | None:intergenic | 25.0% |
| !!! | CGTTTTGGTTTTTATATTTC+AGG | + | tig0037246:21097-21116 | Msa1456400:intron | 25.0% |
| !!! | GCCATTATTGTTATTTTGAT+CGG | + | tig0037246:21323-21342 | Msa1456400:intron | 25.0% |
| ! | AATAAAATTCTACCAATGCT+TGG | + | tig0037246:21353-21372 | Msa1456400:intron | 25.0% |
| ! | ATAAAATTCTACCAATGCTT+GGG | + | tig0037246:21354-21373 | Msa1456400:intron | 25.0% |
| !!! | ACTCTTCCTTTTTTTAGAAA+GGG | + | tig0037246:21426-21445 | Msa1456400:intron | 25.0% |
| !!! | TGTTTTCCCTTTCTAAAAAA+AGG | - | tig0037246:21435-21454 | None:intergenic | 25.0% |
| ! | TGAAAAAATCATAGAAACCA+AGG | - | tig0037246:21473-21492 | None:intergenic | 25.0% |
| !! | CCGATCAAAATAACATTTTA+TGG | - | tig0037246:21502-21521 | None:intergenic | 25.0% |
| ! | AATAAAATTCTACCAATGCT+TGG | + | tig0037246:21353-21372 | Msa1456400:intron | 25.0% |
| ! | ATAAAATTCTACCAATGCTT+GGG | + | tig0037246:21354-21373 | Msa1456400:intron | 25.0% |
| !!! | ACTCTTCCTTTTTTTAGAAA+GGG | + | tig0037246:21426-21445 | Msa1456400:intron | 25.0% |
| !!! | TGTTTTCCCTTTCTAAAAAA+AGG | - | tig0037246:21435-21454 | None:intergenic | 25.0% |
| ! | GAAAAAAATCATAGAAACCA+AGG | - | tig0037246:21649-21668 | None:intergenic | 25.0% |
| !! | CCGATCAAAATAACATTTTA+TGG | - | tig0037246:21502-21521 | None:intergenic | 25.0% |
| ! | AATAAAATTCTACCAATGCT+TGG | + | tig0037246:21353-21372 | Msa1456400:intron | 25.0% |
| ! | ATAAAATTCTACCAATGCTT+GGG | + | tig0037246:21354-21373 | Msa1456400:intron | 25.0% |
| !!! | ACTCTTCCTTTTTTTAGAAA+GGG | + | tig0037246:21426-21445 | Msa1456400:intron | 25.0% |
| !!! | TGTTTTCCCTTTCTAAAAAA+AGG | - | tig0037246:21435-21454 | None:intergenic | 25.0% |
| !!! | TCTCTATATACTCACTTTTA+TGG | - | tig0037246:21857-21876 | None:intergenic | 25.0% |
| !! | TCTGTGTTTTATCTCTATTT+CGG | - | tig0037246:21940-21959 | None:intergenic | 25.0% |
| ! | CAAGTCTTTGATTAAAGAAA+GGG | + | tig0037246:21977-21996 | Msa1456400:intron | 25.0% |
| ! | AACAACCTTGTATATTCATA+AGG | - | tig0037246:22012-22031 | None:intergenic | 25.0% |
| !!! | TAGAAAAGTTGGTAGAAAAT+AGG | + | tig0037246:22178-22197 | Msa1456400:intron | 25.0% |
| ! | AACCATTAGAAAAGATTTAG+AGG | + | tig0037246:22308-22327 | Msa1456400:intron | 25.0% |
| ! | GTTCTATCAAAAACCATATT+TGG | - | tig0037246:22348-22367 | None:intergenic | 25.0% |
| ! | ATGGATTTATTAAGTCCAAA+TGG | + | tig0037246:22510-22529 | Msa1456400:intron | 25.0% |
| ! | CAAGTTTCATTAAGATGATT+AGG | - | tig0037246:22674-22693 | None:intergenic | 25.0% |
| ! | AATGTAAACCTATCAGTATT+AGG | + | tig0037246:22719-22738 | Msa1456400:intron | 25.0% |
| ! | TTATAAATACCACAGAAAAC+AGG | - | tig0037246:22746-22765 | None:intergenic | 25.0% |
| ! | TTTGTTCCAGTTACATTATT+CGG | + | tig0037246:22958-22977 | Msa1456400:intron | 25.0% |
| !! | TTTTATCCATAATCCATGTA+AGG | - | tig0037246:22995-23014 | None:intergenic | 25.0% |
| !!! | GAGAGATTATCATTTTTAGA+TGG | - | tig0037246:23077-23096 | None:intergenic | 25.0% |
| ! | TTTATTCCTTGAATCAGAAA+CGG | - | tig0037246:23099-23118 | None:intergenic | 25.0% |
| ! | ACAATAAAAGAGAAGGAAAA+AGG | - | tig0037246:23248-23267 | None:intergenic | 25.0% |
| ! | TCAACATAGAGATATTTATG+AGG | - | tig0037246:23283-23302 | None:intergenic | 25.0% |
| !! | ATTGTAAAAGTTACTGCTTT+TGG | - | tig0037246:23375-23394 | None:intergenic | 25.0% |
| !! | AAAAGCAGTAACTTTTACAA+TGG | + | tig0037246:23374-23393 | Msa1456400:intron | 25.0% |
| !! | CAAGACAAAATTTCTTTTTG+TGG | + | tig0037246:23441-23460 | Msa1456400:intron | 25.0% |
| !!! | ATCTATATTGCATGTTTTAG+TGG | - | tig0037246:23594-23613 | None:intergenic | 25.0% |
| ! | AAACATGCAATATAGATCTA+TGG | + | tig0037246:23597-23616 | Msa1456400:intron | 25.0% |
| ! | AACATGCAATATAGATCTAT+GGG | + | tig0037246:23598-23617 | Msa1456400:intron | 25.0% |
| !!! | GAAGGTATTAAAATGTCTTA+CGG | + | tig0037246:23662-23681 | Msa1456400:intron | 25.0% |
| ! | AAAAAATTACCTTCATTTGC+TGG | - | tig0037246:23695-23714 | None:intergenic | 25.0% |
| ! | TAACTATACATAGATGATCA+AGG | - | tig0037246:23957-23976 | None:intergenic | 25.0% |
| ! | ATGTTGAAAGATGTCATTTC+TGG | - | tig0037246:19102-19121 | None:intergenic | 30.0% |
| AGAGTTGAATAATGAATTGG+GGG | - | tig0037246:19583-19602 | None:intergenic | 30.0% | |
| ! | AAATGATGGAAACTAGACTT+AGG | + | tig0037246:19620-19639 | Msa1456400:intron | 30.0% |
| CTATAAATCTTCTCTCTACA+TGG | - | tig0037246:19654-19673 | None:intergenic | 30.0% | |
| ! | GATTTATAGATTTTGCAGCA+AGG | + | tig0037246:19665-19684 | Msa1456400:intron | 30.0% |
| ! | TGTAATTTTATCCATGTAGC+CGG | + | tig0037246:19823-19842 | Msa1456400:intron | 30.0% |
| GTTGCTAATAAAATTTAGGG+TGG | + | tig0037246:19879-19898 | Msa1456400:intron | 30.0% | |
| ! | TAATAAAATTTAGGGTGGGT+GGG | + | tig0037246:19884-19903 | Msa1456400:intron | 30.0% |
| TTTGATTGGATCATGTTTGT+AGG | - | tig0037246:20106-20125 | None:intergenic | 30.0% | |
| TACAAACATGATCCAATCAA+AGG | + | tig0037246:20105-20124 | Msa1456400:intron | 30.0% | |
| TAATCAAATTGGAGAATGTC+AGG | - | tig0037246:20132-20151 | None:intergenic | 30.0% | |
| TGACATTCTCCAATTTGATT+AGG | + | tig0037246:20131-20150 | Msa1456400:intron | 30.0% | |
| TTCTCCAATTTGATTAGGTT+TGG | + | tig0037246:20136-20155 | Msa1456400:intron | 30.0% | |
| TCTCCAATTTGATTAGGTTT+GGG | + | tig0037246:20137-20156 | Msa1456400:intron | 30.0% | |
| ATCTTATCTCTTGAAGTTGA+TGG | + | tig0037246:20173-20192 | Msa1456400:CDS | 30.0% | |
| ACGTGAAATTCTTAAATCTC+AGG | + | tig0037246:20316-20335 | Msa1456400:CDS | 30.0% | |
| TCGATTAAGAATGTCTTGTA+GGG | + | tig0037246:20677-20696 | Msa1456400:intron | 30.0% | |
| AAGGCATATTCACATATAGA+AGG | - | tig0037246:20836-20855 | None:intergenic | 30.0% | |
| ACTATAGCTCTTATTCATGA+AGG | - | tig0037246:20855-20874 | None:intergenic | 30.0% | |
| TTCATGAATAAGAGCTATAG+TGG | + | tig0037246:20854-20873 | Msa1456400:intron | 30.0% | |
| ATAAACTTGTGTGTGGATTT+AGG | + | tig0037246:20881-20900 | Msa1456400:intron | 30.0% | |
| !! | CTTTTTGTTTAAGACCGTTT+TGG | + | tig0037246:21082-21101 | Msa1456400:intron | 30.0% |
| ! | CTTTGAAAATGTTGTGCTTA+TGG | + | tig0037246:21184-21203 | Msa1456400:CDS | 30.0% |
| ! | TATAAAAGTGAAGGTATGTG+AGG | + | tig0037246:21232-21251 | Msa1456400:intron | 30.0% |
| CTCTTATCTCTAAATCGAAT+TGG | + | tig0037246:21258-21277 | Msa1456400:intron | 30.0% | |
| GCCGATCAAAATAACAATAA+TGG | - | tig0037246:21327-21346 | None:intergenic | 30.0% | |
| !!! | CACTCTTCCTTTTTTTAGAA+AGG | + | tig0037246:21425-21444 | Msa1456400:intron | 30.0% |
| AAATTAAAAAGTGAAAGGGG+AGG | - | tig0037246:21398-21417 | None:intergenic | 30.0% | |
| !!! | CACTCTTCCTTTTTTTAGAA+AGG | + | tig0037246:21425-21444 | Msa1456400:intron | 30.0% |
| AAATTAAAAAGTGAAAGGGG+AGG | - | tig0037246:21398-21417 | None:intergenic | 30.0% | |
| !!! | CACTCTTCCTTTTTTTAGAA+AGG | + | tig0037246:21425-21444 | Msa1456400:intron | 30.0% |
| ATATAATATATAGGGGGCAA+GGG | - | tig0037246:21908-21927 | None:intergenic | 30.0% | |
| TATATAATATATAGGGGGCA+AGG | - | tig0037246:21909-21928 | None:intergenic | 30.0% | |
| CCTTTCTTTAATCAAAGACT+TGG | - | tig0037246:21979-21998 | None:intergenic | 30.0% | |
| CCAAGTCTTTGATTAAAGAA+AGG | + | tig0037246:21976-21995 | Msa1456400:intron | 30.0% | |
| AAGGTTGTTAAGACAAGATT+CGG | + | tig0037246:22023-22042 | Msa1456400:intron | 30.0% | |
| ! | CTCTACATTTTCTCTACAAT+TGG | - | tig0037246:22134-22153 | None:intergenic | 30.0% |
| ATTGTAGAGAAAATGTAGAG+AGG | + | tig0037246:22134-22153 | Msa1456400:intron | 30.0% | |
| TTGTAGAGAAAATGTAGAGA+GGG | + | tig0037246:22135-22154 | Msa1456400:intron | 30.0% | |
| ! | TCTACCAACTTTTCTACTAT+AGG | - | tig0037246:22174-22193 | None:intergenic | 30.0% |
| TTGATCTACTCTTCTTACAA+CGG | - | tig0037246:22244-22263 | None:intergenic | 30.0% | |
| TGTAAGAAGAGTAGATCAAA+TGG | + | tig0037246:22245-22264 | Msa1456400:intron | 30.0% | |
| ! | GACCTCTAAATCTTTTCTAA+TGG | - | tig0037246:22313-22332 | None:intergenic | 30.0% |
| ! | TGGTTTTTGATAGAACACTA+TGG | + | tig0037246:22352-22371 | Msa1456400:intron | 30.0% |
| TGTTGTTGTAGAGAAAATGT+AGG | + | tig0037246:22433-22452 | Msa1456400:intron | 30.0% | |
| TAACTGTGAAGTTAGAAATC+GGG | - | tig0037246:22483-22502 | None:intergenic | 30.0% | |
| CTAACTGTGAAGTTAGAAAT+CGG | - | tig0037246:22484-22503 | None:intergenic | 30.0% | |
| GATTTATTAAGTCCAAATGG+AGG | + | tig0037246:22513-22532 | Msa1456400:intron | 30.0% | |
| ! | AATTATTTGAGACCTCCATT+TGG | - | tig0037246:22528-22547 | None:intergenic | 30.0% |
| TTACACAATAAACCACCTTT+GGG | - | tig0037246:22598-22617 | None:intergenic | 30.0% | |
| TTTACACAATAAACCACCTT+TGG | - | tig0037246:22599-22618 | None:intergenic | 30.0% | |
| TCATCTTAATGAAACTTGTG+AGG | + | tig0037246:22676-22695 | Msa1456400:intron | 30.0% | |
| !! | GTGACCATTATTTTACAACT+TGG | + | tig0037246:22826-22845 | Msa1456400:intron | 30.0% |
| GACACCAAGTTGTAAAATAA+TGG | - | tig0037246:22833-22852 | None:intergenic | 30.0% | |
| !!! | TTATTTTACAACTTGGTGTC+AGG | + | tig0037246:22833-22852 | Msa1456400:intron | 30.0% |
| GATGTGTTCACGATTAAAAA+AGG | + | tig0037246:22873-22892 | Msa1456400:intron | 30.0% | |
| GAAAAATAGACTGTGAACTT+GGG | + | tig0037246:22895-22914 | Msa1456400:intron | 30.0% | |
| !! | ATTATCATTTTTAGATGGCC+TGG | - | tig0037246:23072-23091 | None:intergenic | 30.0% |
| TTAGAGTAAGCCTTTACAAT+AGG | - | tig0037246:23156-23175 | None:intergenic | 30.0% | |
| AGAAGGCCACAAAATTAAAT+GGG | + | tig0037246:23177-23196 | Msa1456400:intron | 30.0% | |
| ! | AAATGTTAAGAAGTGCACTT+AGG | + | tig0037246:23334-23353 | Msa1456400:intron | 30.0% |
| ! | AATGTTAAGAAGTGCACTTA+GGG | + | tig0037246:23335-23354 | Msa1456400:intron | 30.0% |
| !! | CTTTAAAGTTTGAAGGCTAT+TGG | - | tig0037246:23627-23646 | None:intergenic | 30.0% |
| !! | TGAATGGCTTTAAAGTTTGA+AGG | - | tig0037246:23634-23653 | None:intergenic | 30.0% |
| ! | TTTAAAGCCATTCAGATTCT+AGG | + | tig0037246:23640-23659 | Msa1456400:intron | 30.0% |
| CTCTTGAAATCAAGAAGAAT+GGG | - | tig0037246:23736-23755 | None:intergenic | 30.0% | |
| ACTCTTGAAATCAAGAAGAA+TGG | - | tig0037246:23737-23756 | None:intergenic | 30.0% | |
| CATAATGCTACACATCTAAA+TGG | - | tig0037246:23768-23787 | None:intergenic | 30.0% | |
| CATTTAGATGTGTAGCATTA+TGG | + | tig0037246:23766-23785 | Msa1456400:intron | 30.0% | |
| AGAAAAAGTCACATGACTTT+GGG | - | tig0037246:23881-23900 | None:intergenic | 30.0% | |
| TAGAAAAAGTCACATGACTT+TGG | - | tig0037246:23882-23901 | None:intergenic | 30.0% | |
| AAAGAGACATGAAAGATACT+AGG | - | tig0037246:24118-24137 | None:intergenic | 30.0% | |
| TGATGTTGAATAATTAGCGG+CGG | - | tig0037246:18826-18845 | None:intergenic | 35.0% | |
| GTTGAAATGAATCAATTGCC+AGG | + | tig0037246:19267-19286 | Msa1456400:intron | 35.0% | |
| CAAGATTCAATTTCATCTCC+TGG | - | tig0037246:19288-19307 | None:intergenic | 35.0% | |
| CTTGAACATCCAAAGATCAA+TGG | + | tig0037246:19304-19323 | Msa1456400:intron | 35.0% | |
| GTAGTTTCTCCATTGATCTT+TGG | - | tig0037246:19316-19335 | None:intergenic | 35.0% | |
| !! | TTCAGTGATAGCGTTTTGAA+CGG | - | tig0037246:19338-19357 | None:intergenic | 35.0% |
| GTAGATACAAGACCATTAGA+TGG | - | tig0037246:19418-19437 | None:intergenic | 35.0% | |
| AGATCTAGAGATTAACGAGT+TGG | + | tig0037246:19768-19787 | Msa1456400:intron | 35.0% | |
| ! | CTAATAAAATTTAGGGTGGG+TGG | + | tig0037246:19883-19902 | Msa1456400:intron | 35.0% |
| TGTAGGAGTTGCATAGAATT+TGG | - | tig0037246:20089-20108 | None:intergenic | 35.0% | |
| !! | TTATCTCTTGAAGTTGATGG+TGG | + | tig0037246:20176-20195 | Msa1456400:CDS | 35.0% |
| AACAAAGGAACTTGTGTCTT+TGG | + | tig0037246:20277-20296 | Msa1456400:CDS | 35.0% | |
| ATTATTGTGGTCATGTGCTT+AGG | + | tig0037246:20429-20448 | Msa1456400:intron | 35.0% | |
| ATTGGATGAAACTATGGTGA+AGG | - | tig0037246:20654-20673 | None:intergenic | 35.0% | |
| GACATTCTTAATCGACACAT+TGG | - | tig0037246:20672-20691 | None:intergenic | 35.0% | |
| GTCGATTAAGAATGTCTTGT+AGG | + | tig0037246:20676-20695 | Msa1456400:intron | 35.0% | |
| CCTTGTCAGTCAAAGTATAT+TGG | - | tig0037246:20739-20758 | None:intergenic | 35.0% | |
| CCAATATACTTTGACTGACA+AGG | + | tig0037246:20736-20755 | Msa1456400:intron | 35.0% | |
| TTCACATATAGAAGGCAAAG+AGG | - | tig0037246:20828-20847 | None:intergenic | 35.0% | |
| TGGCTATATAAACTTGTGTG+TGG | + | tig0037246:20874-20893 | Msa1456400:intron | 35.0% | |
| CTACAATGTGGTAAAGAAAG+TGG | - | tig0037246:21048-21067 | None:intergenic | 35.0% | |
| ACGTGCCTTATGAATATACA+AGG | + | tig0037246:22004-22023 | Msa1456400:intron | 35.0% | |
| AGGTTGTTAAGACAAGATTC+GGG | + | tig0037246:22024-22043 | Msa1456400:intron | 35.0% | |
| AGCACCTATAGTAGAAAAGT+TGG | + | tig0037246:22167-22186 | Msa1456400:intron | 35.0% | |
| TGGTAGAAAATAGGCTTAGA+TGG | + | tig0037246:22187-22206 | Msa1456400:intron | 35.0% | |
| GAAAATAGGCTTAGATGGTT+TGG | + | tig0037246:22192-22211 | Msa1456400:intron | 35.0% | |
| AAGAAGAGTAGATCAAATGG+AGG | + | tig0037246:22248-22267 | Msa1456400:intron | 35.0% | |
| ! | TCTTTTCTAATGGTTTCTCG+AGG | - | tig0037246:22303-22322 | None:intergenic | 35.0% |
| AGATTTAGAGGTCAATGAGT+TGG | + | tig0037246:22320-22339 | Msa1456400:intron | 35.0% | |
| ! | CAATGAGTTGGATCCAAATA+TGG | + | tig0037246:22332-22351 | Msa1456400:intron | 35.0% |
| ! | TAGGTTTTGCTTCTATGTTC+TGG | + | tig0037246:22452-22471 | Msa1456400:intron | 35.0% |
| CGATTTCTAACTTCACAGTT+AGG | + | tig0037246:22482-22501 | Msa1456400:intron | 35.0% | |
| ! | ACTTCACAGTTAGGCTTTAA+TGG | + | tig0037246:22491-22510 | Msa1456400:intron | 35.0% |
| GTAGTTTCACTCAAGTGTAA+TGG | + | tig0037246:22633-22652 | Msa1456400:intron | 35.0% | |
| AAACAGGTCCTAATACTGAT+AGG | - | tig0037246:22730-22749 | None:intergenic | 35.0% | |
| ATATCGGTGCAATCTACAAA+AGG | - | tig0037246:22770-22789 | None:intergenic | 35.0% | |
| GGAAAAATAGACTGTGAACT+TGG | + | tig0037246:22894-22913 | Msa1456400:intron | 35.0% | |
| !! | TTCTTACTTTGAAACACCAC+AGG | + | tig0037246:22932-22951 | Msa1456400:intron | 35.0% |
| CATAATCCATGTAAGGAAGT+AGG | - | tig0037246:22988-23007 | None:intergenic | 35.0% | |
| ! | CTACTTCCTTACATGGATTA+TGG | + | tig0037246:22986-23005 | Msa1456400:intron | 35.0% |
| !! | ATTTTTAGATGGCCTGGATT+AGG | - | tig0037246:23066-23085 | None:intergenic | 35.0% |
| TTCTAGACCTCCTATTGTAA+AGG | + | tig0037246:23143-23162 | Msa1456400:intron | 35.0% | |
| ! | TAAAGGCTTACTCTAAGAGA+AGG | + | tig0037246:23160-23179 | Msa1456400:intron | 35.0% |
| GAGAAGGCCACAAAATTAAA+TGG | + | tig0037246:23176-23195 | Msa1456400:intron | 35.0% | |
| !! | CCTATGCCCATTTAATTTTG+TGG | - | tig0037246:23186-23205 | None:intergenic | 35.0% |
| CCACAAAATTAAATGGGCAT+AGG | + | tig0037246:23183-23202 | Msa1456400:intron | 35.0% | |
| TTCCTTAAACAATGCCCTTA+GGG | + | tig0037246:23465-23484 | Msa1456400:intron | 35.0% | |
| ATACCTTCCTAGAATCTGAA+TGG | - | tig0037246:23650-23669 | None:intergenic | 35.0% | |
| AATGCTACACATCTAAATGG+TGG | - | tig0037246:23765-23784 | None:intergenic | 35.0% | |
| ! | TTTTGGATATGTGTGTCTTG+TGG | - | tig0037246:24007-24026 | None:intergenic | 35.0% |
| ! | TATTGTGAAGTATCCATCGA+AGG | + | tig0037246:24063-24082 | Msa1456400:intron | 35.0% |
| TATCTTTCATGTCTCTTTGC+AGG | + | tig0037246:24120-24139 | Msa1456400:intron | 35.0% | |
| GATAATCTATCCAAAGAGGT+GGG | + | tig0037246:24151-24170 | Msa1456400:CDS | 35.0% | |
| AGCTGCTTCTAAATCCCAAT+TGG | - | tig0037246:18940-18959 | None:intergenic | 40.0% | |
| TCAGAAGGAACTCAGAAAGA+AGG | + | tig0037246:18959-18978 | Msa1456400:CDS | 40.0% | |
| CAGAAGGAACTCAGAAAGAA+GGG | + | tig0037246:18960-18979 | Msa1456400:CDS | 40.0% | |
| !! | CGCTAATCAAGCTTTGTTGT+TGG | + | tig0037246:19136-19155 | Msa1456400:intron | 40.0% |
| ACCAACTCTTCCTTTCACTT+TGG | + | tig0037246:19161-19180 | Msa1456400:intron | 40.0% | |
| ACCAAAGTGAAAGGAAGAGT+TGG | - | tig0037246:19165-19184 | None:intergenic | 40.0% | |
| TGAGTTACCTCTAACGATTG+AGG | - | tig0037246:19188-19207 | None:intergenic | 40.0% | |
| TCAATCGTTAGAGGTAACTC+AGG | + | tig0037246:19187-19206 | Msa1456400:intron | 40.0% | |
| ACTGAAGTAGCTGCTATCAT+GGG | + | tig0037246:19352-19371 | Msa1456400:CDS | 40.0% | |
| GAGAATGTGAAGCTAAGAAG+AGG | + | tig0037246:19376-19395 | Msa1456400:CDS | 40.0% | |
| AGTTTGAGCAGTTAGTTACC+AGG | - | tig0037246:19463-19482 | None:intergenic | 40.0% | |
| TGATGGAAACTAGACTTAGG+TGG | + | tig0037246:19623-19642 | Msa1456400:intron | 40.0% | |
| ! | AAGTCTTATCCCACTAAGTG+AGG | - | tig0037246:19849-19868 | None:intergenic | 40.0% |
| TCACTTAGTGGGATAAGACT+TGG | + | tig0037246:19848-19867 | Msa1456400:intron | 40.0% | |
| AGAATGTCAGGACCTTTGAT+TGG | - | tig0037246:20120-20139 | None:intergenic | 40.0% | |
| CGACCCAAACCTAATCAAAT+TGG | - | tig0037246:20143-20162 | None:intergenic | 40.0% | |
| TCAACGTGTTGGATCAGAAT+TGG | + | tig0037246:20220-20239 | Msa1456400:CDS | 40.0% | |
| ATGGTGAAGGCAGTTAAAGA+AGG | - | tig0037246:20641-20660 | None:intergenic | 40.0% | |
| CGACACATTGGATGAAACTA+TGG | - | tig0037246:20660-20679 | None:intergenic | 40.0% | |
| !! | TGTCTTGTAGGGTTTTTGAG+TGG | + | tig0037246:20688-20707 | Msa1456400:intron | 40.0% |
| !!! | GTCTTGTAGGGTTTTTGAGT+GGG | + | tig0037246:20689-20708 | Msa1456400:intron | 40.0% |
| ! | TGACAAGGTTTTGCTCAGTT+TGG | + | tig0037246:20751-20770 | Msa1456400:intron | 40.0% |
| TGGTAAAGAAAGTGGCACTT+CGG | - | tig0037246:21040-21059 | None:intergenic | 40.0% | |
| ACCTTCAACCATTCTGTCTA+TGG | - | tig0037246:21150-21169 | None:intergenic | 40.0% | |
| AATTCTACCAATGCTTGGGT+TGG | + | tig0037246:21358-21377 | Msa1456400:intron | 40.0% | |
| AATTCTACCAATGCTTGGGT+TGG | + | tig0037246:21358-21377 | Msa1456400:intron | 40.0% | |
| AATTCTACCAATGCTTGGGT+TGG | + | tig0037246:21358-21377 | Msa1456400:intron | 40.0% | |
| !! | AACCAAAAGGTATCACGTCA+TGG | - | tig0037246:21813-21832 | None:intergenic | 40.0% |
| AGAAAATGTAGAGAGGGAGT+GGG | + | tig0037246:22141-22160 | Msa1456400:intron | 40.0% | |
| TCTTCTTACAACGGCATCTA+CGG | - | tig0037246:22235-22254 | None:intergenic | 40.0% | |
| AGTCAGGTTAAAAGAGGTAG+AGG | + | tig0037246:22273-22292 | Msa1456400:intron | 40.0% | |
| !! | TGAAACTTGTGAGGAGTATC+AGG | + | tig0037246:22685-22704 | Msa1456400:intron | 40.0% |
| ! | GTATTAGGACCTGTTTTCTG+TGG | + | tig0037246:22734-22753 | Msa1456400:intron | 40.0% |
| TAACTGGAACAAATTGCCTG+TGG | - | tig0037246:22951-22970 | None:intergenic | 40.0% | |
| GGACTTCCGAATAATGTAAC+TGG | - | tig0037246:22967-22986 | None:intergenic | 40.0% | |
| GATTAGGCTCATGTGAGTAT+AGG | - | tig0037246:23050-23069 | None:intergenic | 40.0% | |
| ATCTCTCCGTTTCTGATTCA+AGG | + | tig0037246:23090-23109 | Msa1456400:intron | 40.0% | |
| GAGTAAGCCTTTACAATAGG+AGG | - | tig0037246:23153-23172 | None:intergenic | 40.0% | |
| AAGAGAAGGAAAAAGGTAGC+TGG | - | tig0037246:23241-23260 | None:intergenic | 40.0% | |
| GTTCCTTAAACAATGCCCTT+AGG | + | tig0037246:23464-23483 | Msa1456400:intron | 40.0% | |
| CTTAGATTCACAGCAAACAC+AGG | - | tig0037246:23555-23574 | None:intergenic | 40.0% | |
| ! | AAGCCATTCAGATTCTAGGA+AGG | + | tig0037246:23644-23663 | Msa1456400:intron | 40.0% |
| ! | AAAAAAATCGGCTCCTTCGA+TGG | - | tig0037246:24079-24098 | None:intergenic | 40.0% |
| GCTGGATAATCTATCCAAAG+AGG | + | tig0037246:24147-24166 | Msa1456400:CDS | 40.0% | |
| GGATAATCTATCCAAAGAGG+TGG | + | tig0037246:24150-24169 | Msa1456400:CDS | 40.0% | |
| GAGAAAGCTTACAACCCTTA+CGG | - | tig0037246:24182-24201 | None:intergenic | 40.0% | |
| GGTTGTAAGCTTTCTCAGAA+TGG | + | tig0037246:24186-24205 | Msa1456400:CDS | 40.0% | |
| AGCTTTCTCAGAATGGAAGT+TGG | + | tig0037246:24193-24212 | Msa1456400:CDS | 40.0% | |
| GCTTTCTCAGAATGGAAGTT+GGG | + | tig0037246:24194-24213 | Msa1456400:CDS | 40.0% | |
| CTTTCTCAGAATGGAAGTTG+GGG | + | tig0037246:24195-24214 | Msa1456400:CDS | 40.0% | |
| ATGGGTTTAAGCAGAGTAGC+CGG | + | tig0037246:18774-18793 | Msa1456400:CDS | 45.0% | |
| AAGAACAAGCGCTCCCATTA+AGG | + | tig0037246:18890-18909 | Msa1456400:CDS | 45.0% | |
| GGATTTAGAAGCAGCTCAGA+AGG | + | tig0037246:18944-18963 | Msa1456400:CDS | 45.0% | |
| AGCGGTTCGAGATGATTTCT+TGG | - | tig0037246:19000-19019 | None:intergenic | 45.0% | |
| GCAATTGAGTTCAACGAGAG+CGG | - | tig0037246:19063-19082 | None:intergenic | 45.0% | |
| CGATTGAGGACCAAAGTGAA+AGG | - | tig0037246:19174-19193 | None:intergenic | 45.0% | |
| CTTTGGTCCTCAATCGTTAG+AGG | + | tig0037246:19178-19197 | Msa1456400:intron | 45.0% | |
| CACTGAAGTAGCTGCTATCA+TGG | + | tig0037246:19351-19370 | Msa1456400:CDS | 45.0% | |
| AGCAGTTAGTTACCAGGTAG+GGG | - | tig0037246:19457-19476 | None:intergenic | 45.0% | |
| GAGCAGTTAGTTACCAGGTA+GGG | - | tig0037246:19458-19477 | None:intergenic | 45.0% | |
| TGAGCAGTTAGTTACCAGGT+AGG | - | tig0037246:19459-19478 | None:intergenic | 45.0% | |
| GGGCAAAAGCTCCAAATCAT+AGG | - | tig0037246:19563-19582 | None:intergenic | 45.0% | |
| GAAACTAGACTTAGGTGGTC+TGG | + | tig0037246:19628-19647 | Msa1456400:intron | 45.0% | |
| GAGGATAGTCAGATCTCTAG+AGG | + | tig0037246:19702-19721 | Msa1456400:intron | 45.0% | |
| ! | TAAAATTTAGGGTGGGTGGG+TGG | + | tig0037246:19887-19906 | Msa1456400:intron | 45.0% |
| ! | AAAATTTAGGGTGGGTGGGT+GGG | + | tig0037246:19888-19907 | Msa1456400:intron | 45.0% |
| AGAATTGGCCATGCATGTAG+TGG | + | tig0037246:20235-20254 | Msa1456400:CDS | 45.0% | |
| ! | TTTTGCTGCCACTACATGCA+TGG | - | tig0037246:20246-20265 | None:intergenic | 45.0% |
| TGTGGACATGGAGTATAGAG+AGG | - | tig0037246:20791-20810 | None:intergenic | 45.0% | |
| GTCATTCTTGAGTGTGGACA+TGG | - | tig0037246:20803-20822 | None:intergenic | 45.0% | |
| GAGGTTGTCATTCTTGAGTG+TGG | - | tig0037246:20809-20828 | None:intergenic | 45.0% | |
| ATATTTCAGGCAGAAGCCTC+TGG | + | tig0037246:21110-21129 | Msa1456400:intron | 45.0% | |
| ATTCTGTCTATGGCCTTCTG+AGG | - | tig0037246:21140-21159 | None:intergenic | 45.0% | |
| TCAGAAGGCCATAGACAGAA+TGG | + | tig0037246:21139-21158 | Msa1456400:CDS | 45.0% | |
| GCCATAGACAGAATGGTTGA+AGG | + | tig0037246:21146-21165 | Msa1456400:CDS | 45.0% | |
| ! | GAAACCAAGGTATCACGTCA+TGG | - | tig0037246:21460-21479 | None:intergenic | 45.0% |
| ACAAAGTCCAACCCAAGCAT+TGG | - | tig0037246:21544-21563 | None:intergenic | 45.0% | |
| ! | GAAACCAAGGTATCACGTCA+TGG | - | tig0037246:21460-21479 | None:intergenic | 45.0% |
| ACAAAGTCCAACCCAAGCAT+TGG | - | tig0037246:21544-21563 | None:intergenic | 45.0% | |
| ! | TGCCATGACGTGATACCTTT+TGG | + | tig0037246:21808-21827 | Msa1456400:intron | 45.0% |
| CAAGATTCGGGCTGAAACTA+TGG | + | tig0037246:22036-22055 | Msa1456400:intron | 45.0% | |
| GAGAAAATGTAGAGAGGGAG+TGG | + | tig0037246:22140-22159 | Msa1456400:intron | 45.0% | |
| GAAAATGTAGAGAGGGAGTG+GGG | + | tig0037246:22142-22161 | Msa1456400:intron | 45.0% | |
| AAAATGTAGAGAGGGAGTGG+GGG | + | tig0037246:22143-22162 | Msa1456400:intron | 45.0% | |
| CTTCTTACAACGGCATCTAC+GGG | - | tig0037246:22234-22253 | None:intergenic | 45.0% | |
| AGATCAAATGGAGGAGAGTC+AGG | + | tig0037246:22257-22276 | Msa1456400:intron | 45.0% | |
| GAGGAGAGTCAGGTTAAAAG+AGG | + | tig0037246:22267-22286 | Msa1456400:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | tig0037246:22401-22420 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | tig0037246:22402-22421 | None:intergenic | 45.0% |
| ATCTGTACACCTAAGCCTCA+TGG | + | tig0037246:22559-22578 | Msa1456400:intron | 45.0% | |
| CTGTGGGGGACTGTTTATAT+CGG | - | tig0037246:22786-22805 | None:intergenic | 45.0% | |
| !! | ACAACTTGGTGTCAGGACTA+TGG | + | tig0037246:22840-22859 | Msa1456400:intron | 45.0% |
| GGAAGTCCTACTTCCTTACA+TGG | + | tig0037246:22979-22998 | Msa1456400:intron | 45.0% | |
| TACTCACATGAGCCTAATCC+AGG | + | tig0037246:23051-23070 | Msa1456400:intron | 45.0% | |
| GCATAGGCTCTATAAGTCGT+AGG | + | tig0037246:23199-23218 | Msa1456400:intron | 45.0% | |
| TAGGCTCTATAAGTCGTAGG+TGG | + | tig0037246:23202-23221 | Msa1456400:intron | 45.0% | |
| !! | TGCCCTAAGGGCATTGTTTA+AGG | - | tig0037246:23470-23489 | None:intergenic | 45.0% |
| CTTGCTAACAAGTGCCCTAA+GGG | - | tig0037246:23482-23501 | None:intergenic | 45.0% | |
| TCTTGCTAACAAGTGCCCTA+AGG | - | tig0037246:23483-23502 | None:intergenic | 45.0% | |
| AACACAGGTCTGATGGAAAG+TGG | - | tig0037246:23540-23559 | None:intergenic | 45.0% | |
| !!! | TTTTTTGCGTGCAATGCCAG+CGG | + | tig0037246:23709-23728 | Msa1456400:intron | 45.0% |
| CTTTCATGTCTCTTTGCAGG+AGG | + | tig0037246:24123-24142 | Msa1456400:intron | 45.0% | |
| AAGTTGGGGAAGGAATTGCA+AGG | + | tig0037246:24209-24228 | Msa1456400:CDS | 45.0% | |
| !! | AAAATAAACTTAAAAATATT+AGG | - | tig0037246:23020-23039 | None:intergenic | 5.0% |
| TTTCATGCACAGACGTCTGC+CGG | - | tig0037246:18796-18815 | None:intergenic | 50.0% | |
| GCGGCTTTCACGTCCTTAAT+GGG | - | tig0037246:18906-18925 | None:intergenic | 50.0% | |
| AGCGGCTTTCACGTCCTTAA+TGG | - | tig0037246:18907-18926 | None:intergenic | 50.0% | |
| CCAATTGGAATCGACGAGAG+CGG | - | tig0037246:18925-18944 | None:intergenic | 50.0% | |
| !! | CGCTCTCGTCGATTCCAATT+GGG | + | tig0037246:18923-18942 | Msa1456400:CDS | 50.0% |
| AGCGAGTAAACCTTCGGAAG+CGG | - | tig0037246:19018-19037 | None:intergenic | 50.0% | |
| AGCGAGAGCGAGTAAACCTT+CGG | - | tig0037246:19024-19043 | None:intergenic | 50.0% | |
| ! | GTTCAACGAGAGCGGTTTTG+TGG | - | tig0037246:19055-19074 | None:intergenic | 50.0% |
| GTGATGCACGCACCATCTAA+TGG | + | tig0037246:19403-19422 | Msa1456400:CDS | 50.0% | |
| TTAGTTACCAGGTAGGGGAC+TGG | - | tig0037246:19452-19471 | None:intergenic | 50.0% | |
| TGCAGCAAGGAGAGTAGATC+AGG | + | tig0037246:19678-19697 | Msa1456400:intron | 50.0% | |
| CAAGGAGAGTAGATCAGGTG+AGG | + | tig0037246:19683-19702 | Msa1456400:intron | 50.0% | |
| ! | AGTCAGATCTCTAGAGGCAG+CGG | + | tig0037246:19708-19727 | Msa1456400:intron | 50.0% |
| CTTATCCCACTAAGTGAGGC+CGG | - | tig0037246:19845-19864 | None:intergenic | 50.0% | |
| ! | AAATTTAGGGTGGGTGGGTG+GGG | + | tig0037246:19889-19908 | Msa1456400:intron | 50.0% |
| TTAGGTTTGGGTCGCATTGC+TGG | + | tig0037246:20149-20168 | Msa1456400:intron | 50.0% | |
| TAGGTTTGGGTCGCATTGCT+GGG | + | tig0037246:20150-20169 | Msa1456400:intron | 50.0% | |
| GCAGATGCACTTCAACGTGT+TGG | + | tig0037246:20209-20228 | Msa1456400:CDS | 50.0% | |
| GACATGGAGTATAGAGAGGC+TGG | - | tig0037246:20787-20806 | None:intergenic | 50.0% | |
| AGCCTCTGGTAAACCTCAGA+AGG | + | tig0037246:21124-21143 | Msa1456400:CDS | 50.0% | |
| !! | ACCAATGCTTGGGTTGGACT+TGG | + | tig0037246:21364-21383 | Msa1456400:intron | 50.0% |
| ACCAAGTCCAACCCAAGCAT+TGG | - | tig0037246:21368-21387 | None:intergenic | 50.0% | |
| CATGCCATGACGTGATACCT+TGG | + | tig0037246:21453-21472 | Msa1456400:intron | 50.0% | |
| CATGCCATGACGTGATACCT+TGG | + | tig0037246:21453-21472 | Msa1456400:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | tig0037246:22397-22416 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | tig0037246:22403-22422 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | tig0037246:22400-22419 | Msa1456400:intron | 50.0% | |
| GAACATGAGCCATGAGGCTT+AGG | - | tig0037246:22571-22590 | None:intergenic | 50.0% | |
| AAGCCTCATGGCTCATGTTC+TGG | + | tig0037246:22571-22590 | Msa1456400:intron | 50.0% | |
| ! | TCATGTTCTGGACCCAAAGG+TGG | + | tig0037246:22583-22602 | Msa1456400:intron | 50.0% |
| TCACCTAACGCTTGATCCAG+GGG | - | tig0037246:22810-22829 | None:intergenic | 50.0% | |
| GTCACCTAACGCTTGATCCA+GGG | - | tig0037246:22811-22830 | None:intergenic | 50.0% | |
| CACAGCAAACACAGGTCTGA+TGG | - | tig0037246:23547-23566 | None:intergenic | 50.0% | |
| GGTCAGTGACCAGCAAATGA+AGG | + | tig0037246:23683-23702 | Msa1456400:intron | 50.0% | |
| ATCAAGAAGAATGGGTCCGC+TGG | - | tig0037246:23728-23747 | None:intergenic | 50.0% | |
| TACGGATGAACCCACCTCTT+TGG | - | tig0037246:24164-24183 | None:intergenic | 50.0% | |
| ! | AAGAGGTGGGTTCATCCGTA+AGG | + | tig0037246:24164-24183 | Msa1456400:CDS | 50.0% |
| ! | AGAGGTGGGTTCATCCGTAA+GGG | + | tig0037246:24165-24184 | Msa1456400:CDS | 50.0% |
| CTCAGAATGGAAGTTGGGGA+AGG | + | tig0037246:24199-24218 | Msa1456400:CDS | 50.0% | |
| !! | CCGCTCTCGTCGATTCCAAT+TGG | + | tig0037246:18922-18941 | Msa1456400:CDS | 55.0% |
| TCATCTCGAACCGCTTCCGA+AGG | + | tig0037246:19005-19024 | Msa1456400:CDS | 55.0% | |
| !! | CAACGAGAGCGGTTTTGTGG+TGG | - | tig0037246:19052-19071 | None:intergenic | 55.0% |
| CTTCATACCAGTCCCCTACC+TGG | + | tig0037246:19442-19461 | Msa1456400:CDS | 55.0% | |
| ACTAAGTGAGGCCGGCTACA+TGG | - | tig0037246:19837-19856 | None:intergenic | 55.0% | |
| ATGTAGCCGGCCTCACTTAG+TGG | + | tig0037246:19836-19855 | Msa1456400:intron | 55.0% | |
| TGTAGCCGGCCTCACTTAGT+GGG | + | tig0037246:19837-19856 | Msa1456400:intron | 55.0% | |
| ! | AATTTAGGGTGGGTGGGTGG+GGG | + | tig0037246:19890-19909 | Msa1456400:intron | 55.0% |
| GCATCAGTTCAAGGCAGGGA+AGG | + | tig0037246:19912-19931 | Msa1456400:intron | 55.0% | |
| TCAAGGCAGGGAAGGCTTTC+TGG | + | tig0037246:19920-19939 | Msa1456400:intron | 55.0% | |
| CAAGGCAGGGAAGGCTTTCT+GGG | + | tig0037246:19921-19940 | Msa1456400:intron | 55.0% | |
| !! | GGCCTTCTGAGGTTTACCAG+AGG | - | tig0037246:21129-21148 | None:intergenic | 55.0% |
| ACTAAGTGGGGTCGGCTACA+TGG | - | tig0037246:22389-22408 | None:intergenic | 55.0% | |
| ATGTAGCCGACCCCACTTAG+TGG | + | tig0037246:22388-22407 | Msa1456400:intron | 55.0% | |
| TGTAGCCGACCCCACTTAGT+GGG | + | tig0037246:22389-22408 | Msa1456400:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | tig0037246:22395-22414 | Msa1456400:intron | 55.0% | |
| GGTCCAGAACATGAGCCATG+AGG | - | tig0037246:22577-22596 | None:intergenic | 55.0% | |
| ! | GGCTCATGTTCTGGACCCAA+AGG | + | tig0037246:22580-22599 | Msa1456400:intron | 55.0% |
| AGTCCCCTGGATCAAGCGTT+AGG | + | tig0037246:22804-22823 | Msa1456400:intron | 55.0% | |
| GGTCACCTAACGCTTGATCC+AGG | - | tig0037246:22812-22831 | None:intergenic | 55.0% | |
| ! | TGTCTCTTTGCAGGAGGTGC+TGG | + | tig0037246:24129-24148 | Msa1456400:intron | 55.0% |
| !! | TGGGTGGGGGCATCAGTTCA+AGG | + | tig0037246:19903-19922 | Msa1456400:intron | 60.0% |
| !! | TGGGGGCATCAGTTCAAGGC+AGG | + | tig0037246:19907-19926 | Msa1456400:intron | 60.0% |
| !! | GGGGGCATCAGTTCAAGGCA+GGG | + | tig0037246:19908-19927 | Msa1456400:intron | 60.0% |
| CTTGATCCAGGGGACTGTGG+GGG | - | tig0037246:22800-22819 | None:intergenic | 60.0% | |
| GCTTGATCCAGGGGACTGTG+GGG | - | tig0037246:22801-22820 | None:intergenic | 60.0% | |
| CGCTTGATCCAGGGGACTGT+GGG | - | tig0037246:22802-22821 | None:intergenic | 60.0% | |
| ACGCTTGATCCAGGGGACTG+TGG | - | tig0037246:22803-22822 | None:intergenic | 60.0% | |
| AACAGTCCCCCACAGTCCCC+TGG | + | tig0037246:22791-22810 | Msa1456400:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0037246 | gene | 18774 | 24234 | 18774 | ID=Msa1456400;Name=Msa1456400 |
| tig0037246 | mRNA | 18774 | 24234 | 18774 | ID=Msa1456400-mRNA-1;Parent=Msa1456400;Name=Msa1456400-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.75|0.4|1|1|1|5|0|297 |
| tig0037246 | exon | 18774 | 19128 | 18774 | ID=Msa1456400-mRNA-1:exon:20682;Parent=Msa1456400-mRNA-1 |
| tig0037246 | exon | 19329 | 19463 | 19329 | ID=Msa1456400-mRNA-1:exon:20683;Parent=Msa1456400-mRNA-1 |
| tig0037246 | exon | 20153 | 20337 | 20153 | ID=Msa1456400-mRNA-1:exon:20684;Parent=Msa1456400-mRNA-1 |
| tig0037246 | exon | 21119 | 21244 | 21119 | ID=Msa1456400-mRNA-1:exon:20685;Parent=Msa1456400-mRNA-1 |
| tig0037246 | exon | 24142 | 24234 | 24142 | ID=Msa1456400-mRNA-1:exon:20686;Parent=Msa1456400-mRNA-1 |
| tig0037246 | CDS | 18774 | 19128 | 18774 | ID=Msa1456400-mRNA-1:cds;Parent=Msa1456400-mRNA-1 |
| tig0037246 | CDS | 19329 | 19463 | 19329 | ID=Msa1456400-mRNA-1:cds;Parent=Msa1456400-mRNA-1 |
| tig0037246 | CDS | 20153 | 20337 | 20153 | ID=Msa1456400-mRNA-1:cds;Parent=Msa1456400-mRNA-1 |
| tig0037246 | CDS | 21119 | 21244 | 21119 | ID=Msa1456400-mRNA-1:cds;Parent=Msa1456400-mRNA-1 |
| tig0037246 | CDS | 24142 | 24234 | 24142 | ID=Msa1456400-mRNA-1:cds;Parent=Msa1456400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
