Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458800 | XP_013450760.1 | 97.468 | 237 | 4 | 1 | 1 | 235 | 1 | 237 | 2.31e-167 | 471 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458800 | sp|Q8VZT8|RT11_ARATH | 58.642 | 162 | 65 | 1 | 76 | 235 | 153 | 314 | 1.70e-64 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458800 | I3SP73 | 97.468 | 237 | 4 | 1 | 1 | 235 | 1 | 237 | 1.10e-167 | 471 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0970590 | Msa1458800 | 0.977538 | 5.573261e-144 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458800 | MtrunA17_Chr6g0449471 | 97.468 | 237 | 4 | 1 | 1 | 235 | 1 | 237 | 2.12e-171 | 471 |
| Msa1458800 | MtrunA17_Chr2g0332561 | 86.555 | 238 | 29 | 2 | 1 | 235 | 1 | 238 | 1.40e-147 | 410 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458800 | AT1G31817.1 | 58.642 | 162 | 65 | 1 | 76 | 235 | 153 | 314 | 1.73e-65 | 206 |
Find 70 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGCATTATTCTCACTTT+TGG | 0.164647 | tig0039813:-11766 | None:intergenic |
| ATTACTAGGGTTTGAGATTT+GGG | 0.234267 | tig0039813:-6525 | None:intergenic |
| TCATAATGAAATATGTAAAA+TGG | 0.237571 | tig0039813:-12512 | None:intergenic |
| CATTGTTGCTGCAGATTACT+AGG | 0.255446 | tig0039813:-6539 | None:intergenic |
| TTGGCAGTCTGCAGCCATTA+TGG | 0.258176 | tig0039813:-12223 | None:intergenic |
| GATTACTAGGGTTTGAGATT+TGG | 0.262449 | tig0039813:-6526 | None:intergenic |
| AATCAGGGCAAAAGCTTTCT+AGG | 0.277751 | tig0039813:+12003 | Msa1458800:CDS |
| GTGAGATTGAAGTGTGGTTT+TGG | 0.288990 | tig0039813:-6617 | None:intergenic |
| CCCTGATTTCATGTCTTTCA+AGG | 0.289130 | tig0039813:-11988 | None:intergenic |
| AATTGAAATCATTCGAAATT+CGG | 0.300009 | tig0039813:-12450 | None:intergenic |
| GGACGGAGATCTAGAGGTTT+AGG | 0.305182 | tig0039813:+12056 | Msa1458800:CDS |
| TGGTGGAAATTCCAGGAAAA+TGG | 0.320222 | tig0039813:+11791 | Msa1458800:CDS |
| GAAGATGAAAAGAGTGTTAT+GGG | 0.321530 | tig0039813:+11834 | Msa1458800:CDS |
| TGGCAGTCTGCAGCCATTAT+GGG | 0.322578 | tig0039813:-12222 | None:intergenic |
| AGAAGATGAAAAGAGTGTTA+TGG | 0.333476 | tig0039813:+11833 | Msa1458800:CDS |
| TCCTTGAAAGACATGAAATC+AGG | 0.342062 | tig0039813:+11987 | Msa1458800:CDS |
| AACTAGATACGTCGACTCTT+TGG | 0.342449 | tig0039813:-12242 | None:intergenic |
| GAAACTGCAGGATATGTTAG+AGG | 0.388568 | tig0039813:+11642 | Msa1458800:intron |
| CTGAGATTGGTGGAAATTCC+AGG | 0.399094 | tig0039813:+11784 | Msa1458800:CDS |
| GTATCTTCAATGTATACAAT+TGG | 0.413544 | tig0039813:-12188 | None:intergenic |
| GTAAAACTTAGTGGCTCTGC+TGG | 0.418753 | tig0039813:+11963 | Msa1458800:CDS |
| TCCCGACCCCGCAGAAAATC+CGG | 0.427991 | tig0039813:-11732 | None:intergenic |
| ACAACTCGTCGTCCCCATAA+TGG | 0.428444 | tig0039813:+12209 | Msa1458800:CDS |
| AAAGGAAATGTAAAACTTAG+TGG | 0.428546 | tig0039813:+11954 | Msa1458800:CDS |
| TGTGAATGCAAGTGCTCGTC+CGG | 0.438860 | tig0039813:+11713 | Msa1458800:CDS |
| GCTATCTATCTCAGTTAGAA+AGG | 0.468861 | tig0039813:+12380 | Msa1458800:three_prime_UTR |
| ATTGTAATTTGAGTGGAAGA+AGG | 0.472266 | tig0039813:-12427 | None:intergenic |
| GTTACAGTGACCGATTCTAA+AGG | 0.474490 | tig0039813:+11936 | Msa1458800:CDS |
| GTGCAAGTTGGGGTTTGAGC+GGG | 0.480718 | tig0039813:+11673 | Msa1458800:CDS |
| GAAGAAGGAATTGAAATTTG+AGG | 0.481411 | tig0039813:-12412 | None:intergenic |
| AATGAAGAGATTGACGGCTA+TGG | 0.482399 | tig0039813:-6588 | None:intergenic |
| AATTGTGTTGTGTTGTGACT+AGG | 0.493198 | tig0039813:+12469 | Msa1458800:three_prime_UTR |
| CATCATGCTGGAAATGATAC+AGG | 0.497731 | tig0039813:-11872 | None:intergenic |
| TGCTGAAGCAACTGCGGAAG+TGG | 0.498444 | tig0039813:+12031 | Msa1458800:CDS |
| AGAATCGGTCACTGTAACAA+AGG | 0.511601 | tig0039813:-11931 | None:intergenic |
| GAACAAAATCAGCATCATGC+TGG | 0.519192 | tig0039813:-11884 | None:intergenic |
| GAGAATAATGCTGAGATTGG+TGG | 0.526522 | tig0039813:+11774 | Msa1458800:CDS |
| TTGTAGCAACATCTATTGAA+AGG | 0.526722 | tig0039813:+12358 | Msa1458800:three_prime_UTR |
| AGATTGACGGCTATGGATGA+AGG | 0.535592 | tig0039813:-6581 | None:intergenic |
| AGTGAGAATAATGCTGAGAT+TGG | 0.539267 | tig0039813:+11771 | Msa1458800:CDS |
| GTTGTGACTAGGCTATGTTA+TGG | 0.539397 | tig0039813:+12480 | Msa1458800:three_prime_UTR |
| AATTCGGATTGTAATTTGAG+TGG | 0.553403 | tig0039813:-12434 | None:intergenic |
| CAAGTTGGGGTTTGAGCGGG+AGG | 0.553465 | tig0039813:+11676 | Msa1458800:CDS |
| GGCAGTCTGCAGCCATTATG+GGG | 0.556364 | tig0039813:-12221 | None:intergenic |
| TAGAAAATACGTTCAACAGT+AGG | 0.556732 | tig0039813:-12276 | None:intergenic |
| TGAAGGAAGAACACAATTTG+CGG | 0.562090 | tig0039813:-6564 | None:intergenic |
| GAAGCAACTGCGGAAGTGGT+TGG | 0.563081 | tig0039813:+12035 | Msa1458800:CDS |
| ATGGAGAATGAAGAGATTGA+CGG | 0.563106 | tig0039813:-6594 | None:intergenic |
| ATTGTTGCTGCAGATTACTA+GGG | 0.563552 | tig0039813:-6538 | None:intergenic |
| AGCAATATTGAGCTGGAGGG+AGG | 0.568183 | tig0039813:+12136 | Msa1458800:CDS |
| TCTCACACCACCTTCTTCCA+AGG | 0.578505 | tig0039813:+6634 | Msa1458800:CDS |
| AAAGGCAAGCAATATTGAGC+TGG | 0.578900 | tig0039813:+12129 | Msa1458800:CDS |
| GTGGTTGGACGGAGATCTAG+AGG | 0.582119 | tig0039813:+12050 | Msa1458800:CDS |
| CCTTGAAAGACATGAAATCA+GGG | 0.583578 | tig0039813:+11988 | Msa1458800:CDS |
| AGTGCAAGTTGGGGTTTGAG+CGG | 0.585051 | tig0039813:+11672 | Msa1458800:CDS |
| GCAATATTGAGCTGGAGGGA+GGG | 0.589094 | tig0039813:+12137 | Msa1458800:CDS |
| CAACTGCGGAAGTGGTTGGA+CGG | 0.593288 | tig0039813:+12039 | Msa1458800:CDS |
| TCTGTTGTCATGAAAGTGAA+CGG | 0.595836 | tig0039813:+12086 | Msa1458800:CDS |
| AGGAAAATGGACTTTGTGAG+AGG | 0.596525 | tig0039813:+11804 | Msa1458800:CDS |
| GGCAAGCAATATTGAGCTGG+AGG | 0.597786 | tig0039813:+12132 | Msa1458800:CDS |
| TTACTAGGGTTTGAGATTTG+GGG | 0.606708 | tig0039813:-6524 | None:intergenic |
| GAGGGATTTACTGATTCTCG+AGG | 0.625322 | tig0039813:+12155 | Msa1458800:CDS |
| GAAAGTGTTACCTTGGAAGA+AGG | 0.628450 | tig0039813:-6644 | None:intergenic |
| AATGAAATATGTAAAATGGA+TGG | 0.629058 | tig0039813:-12508 | None:intergenic |
| GCAAGCAATATTGAGCTGGA+GGG | 0.647783 | tig0039813:+12133 | Msa1458800:CDS |
| GTATGCTGCTGAAGCAACTG+CGG | 0.658519 | tig0039813:+12025 | Msa1458800:CDS |
| AATATGTAAAATGGATGGTG+AGG | 0.664727 | tig0039813:-12503 | None:intergenic |
| GATGAAAAGAGTGTTATGGG+AGG | 0.673626 | tig0039813:+11837 | Msa1458800:CDS |
| GGTGGTGTGAGATTGAAGTG+TGG | 0.696440 | tig0039813:-6623 | None:intergenic |
| AGTGTTACCTTGGAAGAAGG+TGG | 0.718531 | tig0039813:-6641 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAACAATAATGAAATAT+TGG | + | tig0039813:9932-9951 | Msa1458800:intron | 10.0% |
| !!! | CTTTTTTCTTTAATTGTTAT+TGG | + | tig0039813:6799-6818 | Msa1458800:intron | 15.0% |
| !!! | ATATATTTTACCATCAAATT+AGG | + | tig0039813:7299-7318 | Msa1458800:intron | 15.0% |
| !! | TTTCTTGATTTCATAAATTT+AGG | - | tig0039813:7327-7346 | None:intergenic | 15.0% |
| !! | TACAAAATATTGTTAAATAG+AGG | + | tig0039813:7665-7684 | Msa1458800:intron | 15.0% |
| !! | ACAAAATATTGTTAAATAGA+GGG | + | tig0039813:7666-7685 | Msa1458800:intron | 15.0% |
| !! | ACAAAAAGAAAATAAAAATC+AGG | - | tig0039813:7804-7823 | None:intergenic | 15.0% |
| !!! | TATAAGTTTTGTAAGATTTT+TGG | + | tig0039813:8790-8809 | Msa1458800:intron | 15.0% |
| !!! | ATAAGTTTTGTAAGATTTTT+GGG | + | tig0039813:8791-8810 | Msa1458800:intron | 15.0% |
| !!! | ATATATTTTACCATCAAATT+AGG | + | tig0039813:7299-7318 | Msa1458800:intron | 15.0% |
| !! | AAATCAATAAACTAGAAAAA+AGG | + | tig0039813:9136-9155 | Msa1458800:intron | 15.0% |
| !! | ATATATGTTATCATCAAATT+AGG | + | tig0039813:9354-9373 | Msa1458800:intron | 15.0% |
| !! | TACAAAATATTGTTAAATAG+CGG | + | tig0039813:7665-7684 | Msa1458800:intron | 15.0% |
| !!! | TATAGTTTTCATCTAAAATT+GGG | - | tig0039813:10107-10126 | None:intergenic | 15.0% |
| !!! | ATATAGTTTTCATCTAAAAT+TGG | - | tig0039813:10108-10127 | None:intergenic | 15.0% |
| !! | TTGTGTTAATTATATTAAGT+TGG | + | tig0039813:11038-11057 | Msa1458800:intron | 15.0% |
| !! | TGTGTTAATTATATTAAGTT+GGG | + | tig0039813:11039-11058 | Msa1458800:intron | 15.0% |
| !! | TCATAATGAAATATGTAAAA+TGG | - | tig0039813:12515-12534 | None:intergenic | 15.0% |
| !!! | ATAAGTTTTGTAAGATTGTT+TGG | + | tig0039813:6981-7000 | Msa1458800:intron | 20.0% |
| !!! | TAAGTTTTGTAAGATTGTTT+GGG | + | tig0039813:6982-7001 | Msa1458800:intron | 20.0% |
| !! | ATACATGATATCATCAAATT+AGG | + | tig0039813:7554-7573 | Msa1458800:intron | 20.0% |
| !!! | TTTTCTTTTTGTAGAAAGAT+TGG | + | tig0039813:7812-7831 | Msa1458800:intron | 20.0% |
| !! | TAAAGAAATTGGATTCTAAA+TGG | + | tig0039813:7965-7984 | Msa1458800:intron | 20.0% |
| !! | ATATATGGTATCATCAAATT+AGG | + | tig0039813:8158-8177 | Msa1458800:intron | 20.0% |
| !! | TACAAAATATTGTCAAATAG+CGG | + | tig0039813:8507-8526 | Msa1458800:intron | 20.0% |
| !!! | TTTATTGATTTCATCCATTT+AGG | - | tig0039813:9127-9146 | None:intergenic | 20.0% |
| !!! | TATTCTTTTTGTAGAAAGAT+TGG | + | tig0039813:9631-9650 | Msa1458800:intron | 20.0% |
| !!! | ATCTAATTTCATTCCTTTTT+GGG | + | tig0039813:10183-10202 | Msa1458800:intron | 20.0% |
| !!! | TTATTAGAGTTGATAAAAGA+AGG | + | tig0039813:10228-10247 | Msa1458800:intron | 20.0% |
| !!! | AAAAGGTTTAAAATCCATAT+GGG | - | tig0039813:10363-10382 | None:intergenic | 20.0% |
| !!! | TAAAAGGTTTAAAATCCATA+TGG | - | tig0039813:10364-10383 | None:intergenic | 20.0% |
| !! | TAAAGAATCAAAGTCATAAA+AGG | - | tig0039813:10380-10399 | None:intergenic | 20.0% |
| !! | TATCCTAATCAAATTAATCT+TGG | - | tig0039813:10488-10507 | None:intergenic | 20.0% |
| !!! | AGATTAATTTGATTAGGATA+TGG | + | tig0039813:10488-10507 | Msa1458800:intron | 20.0% |
| !! | AAGATGTGTTAAACAAAATA+GGG | + | tig0039813:10856-10875 | Msa1458800:intron | 20.0% |
| !!! | TTATTTTGTGAGACTAAATT+GGG | - | tig0039813:10990-11009 | None:intergenic | 20.0% |
| !!! | ATTATTTTGTGAGACTAAAT+TGG | - | tig0039813:10991-11010 | None:intergenic | 20.0% |
| !!! | TGGTTATTATTTTGAGTAAA+AGG | + | tig0039813:11296-11315 | Msa1458800:intron | 20.0% |
| !!! | ATTTTGTTCATATAAAGATG+CGG | + | tig0039813:11898-11917 | Msa1458800:CDS | 20.0% |
| !!! | TTTTACATTTCCTTTAGAAT+CGG | - | tig0039813:11949-11968 | None:intergenic | 20.0% |
| !! | AATTGAAATCATTCGAAATT+CGG | - | tig0039813:12453-12472 | None:intergenic | 20.0% |
| !! | AATGAAATATGTAAAATGGA+TGG | - | tig0039813:12511-12530 | None:intergenic | 20.0% |
| !! | GAGAGTGATAATCATTTTAA+AGG | - | tig0039813:6479-6498 | None:intergenic | 25.0% |
| !! | TTTTTAGATGTTTGCACTTT+TGG | + | tig0039813:6754-6773 | Msa1458800:intron | 25.0% |
| !! | TTTTAGATGTTTGCACTTTT+GGG | + | tig0039813:6755-6774 | Msa1458800:intron | 25.0% |
| ! | TATCAAATTACTATCAGTGT+CGG | - | tig0039813:6918-6937 | None:intergenic | 25.0% |
| !! | AATTTAGGATCCTAATTTGA+TGG | - | tig0039813:7312-7331 | None:intergenic | 25.0% |
| ! | GAAATCAAGAAACTAGAAAA+AGG | + | tig0039813:7335-7354 | Msa1458800:intron | 25.0% |
| ! | TTACTAGTTAGTGATAGATT+CGG | + | tig0039813:7366-7385 | Msa1458800:intron | 25.0% |
| ! | TTACAACTTTAGATCCTAAA+TGG | + | tig0039813:7748-7767 | Msa1458800:intron | 25.0% |
| !!! | TATTTCATTTTAGTGTACCT+AGG | + | tig0039813:7866-7885 | Msa1458800:intron | 25.0% |
| !!! | TGTCAATGTTCTAAAGAAAT+TGG | + | tig0039813:7954-7973 | Msa1458800:intron | 25.0% |
| ! | TAAAATCAAGAAAACTGGAA+AGG | + | tig0039813:7989-8008 | Msa1458800:intron | 25.0% |
| ! | TAAATCAAGAAACTGCAAAA+AGG | + | tig0039813:8045-8064 | Msa1458800:intron | 25.0% |
| ! | TACACAACTCATATCATATA+TGG | + | tig0039813:7284-7303 | Msa1458800:intron | 25.0% |
| ! | TACACAACTCATATCATATA+TGG | + | tig0039813:7284-7303 | Msa1458800:intron | 25.0% |
| ! | CTAAATAGCTGAATTCATTT+GGG | + | tig0039813:8615-8634 | Msa1458800:intron | 25.0% |
| ! | AAATAGAAGTGATCGTATAT+AGG | + | tig0039813:8753-8772 | Msa1458800:intron | 25.0% |
| ! | AATAGAAGTGATCGTATATA+GGG | + | tig0039813:8754-8773 | Msa1458800:intron | 25.0% |
| ! | AATAAGTTGTTTATCCAAAC+AGG | + | tig0039813:7201-7220 | Msa1458800:intron | 25.0% |
| !!! | TATTTGATTTTAATGCACGT+GGG | + | tig0039813:9684-9703 | Msa1458800:intron | 25.0% |
| !!! | CATAATATTTAGCTTGCATT+TGG | + | tig0039813:9741-9760 | Msa1458800:intron | 25.0% |
| ! | TCAACAAATTAGATCCTAAA+TGG | + | tig0039813:9783-9802 | Msa1458800:intron | 25.0% |
| ! | TCATTATTGTTAAATGAGCT+TGG | - | tig0039813:9927-9946 | None:intergenic | 25.0% |
| ! | AATATGATGCTATCAATTAG+TGG | + | tig0039813:10028-10047 | Msa1458800:intron | 25.0% |
| !! | CATCTAATTTCATTCCTTTT+TGG | + | tig0039813:10182-10201 | Msa1458800:intron | 25.0% |
| !! | TCTAATTTCATTCCTTTTTG+GGG | + | tig0039813:10184-10203 | Msa1458800:intron | 25.0% |
| ! | TTGCTAGTAAAAAATTAACC+TGG | + | tig0039813:10324-10343 | Msa1458800:intron | 25.0% |
| !! | TAGCCAAGATTAATTTGATT+AGG | + | tig0039813:10482-10501 | Msa1458800:intron | 25.0% |
| ! | CAAGATGTGTTAAACAAAAT+AGG | + | tig0039813:10855-10874 | Msa1458800:intron | 25.0% |
| ! | CTTATCAGTGTACTAATATT+CGG | + | tig0039813:10927-10946 | Msa1458800:intron | 25.0% |
| ! | GAAAATTGTAAGACCAAATT+GGG | - | tig0039813:10961-10980 | None:intergenic | 25.0% |
| ! | AGAAAATTGTAAGACCAAAT+TGG | - | tig0039813:10962-10981 | None:intergenic | 25.0% |
| ! | ACACAATTTGAAAATGTCAA+GGG | - | tig0039813:11024-11043 | None:intergenic | 25.0% |
| ! | AACACAATTTGAAAATGTCA+AGG | - | tig0039813:11025-11044 | None:intergenic | 25.0% |
| !!! | TAATCTTCTATTTCTATACC+TGG | - | tig0039813:11135-11154 | None:intergenic | 25.0% |
| ! | ATAATCACACAACCTTATTA+GGG | - | tig0039813:11495-11514 | None:intergenic | 25.0% |
| ! | TATAATCACACAACCTTATT+AGG | - | tig0039813:11496-11515 | None:intergenic | 25.0% |
| ! | TTATGCAATGACATGAAATA+TGG | - | tig0039813:10674-10693 | None:intergenic | 25.0% |
| ! | AAAGGAAATGTAAAACTTAG+TGG | + | tig0039813:11954-11973 | Msa1458800:CDS | 25.0% |
| ! | GTATCTTCAATGTATACAAT+TGG | - | tig0039813:12191-12210 | None:intergenic | 25.0% |
| ! | ATTACTAGGGTTTGAGATTT+GGG | - | tig0039813:6528-6547 | None:intergenic | 30.0% |
| CAACACACACTTATGATTAT+GGG | - | tig0039813:7227-7246 | None:intergenic | 30.0% | |
| TCAACACACACTTATGATTA+TGG | - | tig0039813:7228-7247 | None:intergenic | 30.0% | |
| TATTACTAGTGTCTATGTGT+CGG | - | tig0039813:7435-7454 | None:intergenic | 30.0% | |
| CACTCTTTAACAACATTGTT+AGG | - | tig0039813:7582-7601 | None:intergenic | 30.0% | |
| ! | TATTTTGTACTAGTGTATCG+TGG | - | tig0039813:7654-7673 | None:intergenic | 30.0% |
| ATGGCTAAAATCAAGAAAAC+TGG | + | tig0039813:7984-8003 | Msa1458800:intron | 30.0% | |
| ATGCCTTCAATATGAAGTTT+AGG | + | tig0039813:8117-8136 | Msa1458800:intron | 30.0% | |
| TCTCTATTCACAACATTGTT+AGG | - | tig0039813:8186-8205 | None:intergenic | 30.0% | |
| ATGCCTTCAATATGAAGTTT+AGG | + | tig0039813:8117-8136 | Msa1458800:intron | 30.0% | |
| ACACCTAAACTTCATATTGA+AGG | - | tig0039813:8359-8378 | None:intergenic | 30.0% | |
| ! | GATTTGTTCAAATTTCGCTA+CGG | - | tig0039813:8460-8479 | None:intergenic | 30.0% |
| CCAAATGAATTCAGCTATTT+AGG | - | tig0039813:8617-8636 | None:intergenic | 30.0% | |
| CCTAAATAGCTGAATTCATT+TGG | + | tig0039813:8614-8633 | Msa1458800:intron | 30.0% | |
| !! | GTATATAGGGTCTTATTTAC+TGG | + | tig0039813:8767-8786 | Msa1458800:intron | 30.0% |
| ! | AGATCTTTTTATAAGCTACC+TGG | - | tig0039813:8883-8902 | None:intergenic | 30.0% |
| ! | CATTTAGGATCCTAATTTGA+TGG | - | tig0039813:9112-9131 | None:intergenic | 30.0% |
| CATCAAATTAGGATCCTAAA+TGG | + | tig0039813:7310-7329 | Msa1458800:intron | 30.0% | |
| ATGCCTTCAATATGAAGTTT+CGG | + | tig0039813:8117-8136 | Msa1458800:intron | 30.0% | |
| TCTCTATTCACAACATTGTT+AGG | - | tig0039813:8186-8205 | None:intergenic | 30.0% | |
| !! | GTTTTGTTCAAATTTCGCTA+CGG | - | tig0039813:9429-9448 | None:intergenic | 30.0% |
| TGACAACATTAGATCCTAAA+TGG | + | tig0039813:9569-9588 | Msa1458800:intron | 30.0% | |
| !! | GTATTTGATTTTAATGCACG+TGG | + | tig0039813:9683-9702 | Msa1458800:intron | 30.0% |
| TAAAGTCGAGAAAACAGAAA+AGG | + | tig0039813:9807-9826 | Msa1458800:intron | 30.0% | |
| AGTGATAGATAGTAATCAAC+AGG | + | tig0039813:9839-9858 | Msa1458800:intron | 30.0% | |
| ! | GTGAAATACACAGTGTTTTA+AGG | - | tig0039813:9868-9887 | None:intergenic | 30.0% |
| !!! | CGGTTTTTTTTTGGAAGTAA+AGG | + | tig0039813:10516-10535 | Msa1458800:intron | 30.0% |
| GTTTCTGTCAAAACAAGTAA+AGG | + | tig0039813:10543-10562 | Msa1458800:intron | 30.0% | |
| TGGAAAGACTAACTTAGAAT+TGG | + | tig0039813:10738-10757 | Msa1458800:intron | 30.0% | |
| TGAAGCTCATCAACATAAAT+GGG | - | tig0039813:10798-10817 | None:intergenic | 30.0% | |
| ATGAAGCTCATCAACATAAA+TGG | - | tig0039813:10799-10818 | None:intergenic | 30.0% | |
| TTTGTTTAACACATCTTGCT+TGG | - | tig0039813:10853-10872 | None:intergenic | 30.0% | |
| TCGACAAAAATTGTTAGATG+TGG | + | tig0039813:11166-11185 | Msa1458800:intron | 30.0% | |
| ATACCATTCTCACTAATTGT+TGG | + | tig0039813:11217-11236 | Msa1458800:intron | 30.0% | |
| AAACCAACAATTAGTGAGAA+TGG | - | tig0039813:11223-11242 | None:intergenic | 30.0% | |
| TCAATATTTGTGTTTGTGTG+TGG | + | tig0039813:11368-11387 | Msa1458800:intron | 30.0% | |
| TAATCACACAACCTTATTAG+GGG | - | tig0039813:11494-11513 | None:intergenic | 30.0% | |
| !! | AGAAGATGAAAAGAGTGTTA+TGG | + | tig0039813:11833-11852 | Msa1458800:CDS | 30.0% |
| !! | GAAGATGAAAAGAGTGTTAT+GGG | + | tig0039813:11834-11853 | Msa1458800:CDS | 30.0% |
| ! | TTACTCATTTTCGAAGGAAA+AGG | + | tig0039813:12111-12130 | Msa1458800:CDS | 30.0% |
| TAGAAAATACGTTCAACAGT+AGG | - | tig0039813:12279-12298 | None:intergenic | 30.0% | |
| AGATGTTGCTACAAAAATTC+TGG | - | tig0039813:12352-12371 | None:intergenic | 30.0% | |
| TTGTAGCAACATCTATTGAA+AGG | + | tig0039813:12358-12377 | Msa1458800:three_prime_UTR | 30.0% | |
| GAAGAAGGAATTGAAATTTG+AGG | - | tig0039813:12415-12434 | None:intergenic | 30.0% | |
| ATTGTAATTTGAGTGGAAGA+AGG | - | tig0039813:12430-12449 | None:intergenic | 30.0% | |
| AATTCGGATTGTAATTTGAG+TGG | - | tig0039813:12437-12456 | None:intergenic | 30.0% | |
| AATATGTAAAATGGATGGTG+AGG | - | tig0039813:12506-12525 | None:intergenic | 30.0% | |
| ! | TTACTAGGGTTTGAGATTTG+GGG | - | tig0039813:6527-6546 | None:intergenic | 35.0% |
| ! | GATTACTAGGGTTTGAGATT+TGG | - | tig0039813:6529-6548 | None:intergenic | 35.0% |
| ATTGTTGCTGCAGATTACTA+GGG | - | tig0039813:6541-6560 | None:intergenic | 35.0% | |
| TGAAGGAAGAACACAATTTG+CGG | - | tig0039813:6567-6586 | None:intergenic | 35.0% | |
| ATGGAGAATGAAGAGATTGA+CGG | - | tig0039813:6597-6616 | None:intergenic | 35.0% | |
| !! | AAAGTGTGAAAGTGTTACCT+TGG | - | tig0039813:6654-6673 | None:intergenic | 35.0% |
| AAGTGATCCTATTCGTATGT+AGG | + | tig0039813:6943-6962 | Msa1458800:intron | 35.0% | |
| AGTGATCCTATTCGTATGTA+GGG | + | tig0039813:6944-6963 | Msa1458800:intron | 35.0% | |
| ATAAGACCCTACATACGAAT+AGG | - | tig0039813:6953-6972 | None:intergenic | 35.0% | |
| !! | GTATGTAGGGTCTTATTTAC+TGG | + | tig0039813:6957-6976 | Msa1458800:intron | 35.0% |
| ! | TTATTTTCGTAAGTTCTGCC+AGG | + | tig0039813:7053-7072 | Msa1458800:intron | 35.0% |
| AGAACTTTCTATAAGCTACC+TGG | - | tig0039813:7074-7093 | None:intergenic | 35.0% | |
| CTTATGATTATGGGTCTGTT+TGG | - | tig0039813:7218-7237 | None:intergenic | 35.0% | |
| ! | ATGCCTTTAATCTGAAGTGT+CGG | + | tig0039813:7258-7277 | Msa1458800:intron | 35.0% |
| CAAGAAACTAGAAAAAGGTG+TGG | + | tig0039813:7340-7359 | Msa1458800:intron | 35.0% | |
| ATAGTTGTGTTATACCGTAG+CGG | + | tig0039813:7605-7624 | Msa1458800:intron | 35.0% | |
| ! | GATTTGTTCAAATTCCGCTA+CGG | - | tig0039813:7622-7641 | None:intergenic | 35.0% |
| CCAAATGATTTCAGCCATTT+AGG | - | tig0039813:7765-7784 | None:intergenic | 35.0% | |
| CCTAAATGGCTGAAATCATT+TGG | + | tig0039813:7762-7781 | Msa1458800:intron | 35.0% | |
| TAGAAAGATTGGTGCAATAG+TGG | + | tig0039813:7823-7842 | Msa1458800:intron | 35.0% | |
| GTGAGTAGTGATAAATCCTT+TGG | + | tig0039813:8022-8041 | Msa1458800:intron | 35.0% | |
| GCAGTTTCTTGATTTACCAA+AGG | - | tig0039813:8041-8060 | None:intergenic | 35.0% | |
| GCACCTAAACTTCATATTGA+AGG | - | tig0039813:8123-8142 | None:intergenic | 35.0% | |
| ! | GCTTTGTTCAAATTTCGCTA+CGG | - | tig0039813:8233-8252 | None:intergenic | 35.0% |
| TTGTACTAAGTAGTGTATCG+CGG | - | tig0039813:8492-8511 | None:intergenic | 35.0% | |
| CAGCCTATGATATTGTTCAT+CGG | + | tig0039813:8828-8847 | Msa1458800:intron | 35.0% | |
| CAACCGATGAACAATATCAT+AGG | - | tig0039813:8834-8853 | None:intergenic | 35.0% | |
| ! | TTATTTTCGTATGTTCTGCC+AGG | + | tig0039813:8862-8881 | Msa1458800:intron | 35.0% |
| ACGCCTTTAATATGAAGTGT+CGG | + | tig0039813:9063-9082 | Msa1458800:intron | 35.0% | |
| AAGGTGTAGTAGTTACTAGT+TGG | + | tig0039813:9155-9174 | Msa1458800:intron | 35.0% | |
| TATTGCTGATGTATATGCGT+CGG | - | tig0039813:9236-9255 | None:intergenic | 35.0% | |
| GTTGTGAATAGAGATTGTAG+TGG | + | tig0039813:9388-9407 | Msa1458800:intron | 35.0% | |
| CTAAATGGCTGAAGTCATTT+GGG | + | tig0039813:9584-9603 | Msa1458800:intron | 35.0% | |
| TTTCTCGACTTTAGCCATTT+AGG | - | tig0039813:9800-9819 | None:intergenic | 35.0% | |
| TCGAGAAAACAGAAAAGGAT+CGG | + | tig0039813:9812-9831 | Msa1458800:intron | 35.0% | |
| !!! | AATCCTTTGAGCTAGCTTTT+GGG | + | tig0039813:9893-9912 | Msa1458800:intron | 35.0% |
| ATATCTGTGATTCACATCAG+TGG | + | tig0039813:9974-9993 | Msa1458800:intron | 35.0% | |
| TATCACTGAATGAATGCTCT+TGG | + | tig0039813:10070-10089 | Msa1458800:intron | 35.0% | |
| AAAATTCCTGTCAGACAGTT+TGG | + | tig0039813:10137-10156 | Msa1458800:intron | 35.0% | |
| AAATTCCTGTCAGACAGTTT+GGG | + | tig0039813:10138-10157 | Msa1458800:intron | 35.0% | |
| TGAGAACTTAATCCCCAAAA+AGG | - | tig0039813:10199-10218 | None:intergenic | 35.0% | |
| TTGATTAGGATATGGCTTGA+CGG | + | tig0039813:10496-10515 | Msa1458800:intron | 35.0% | |
| !!! | ATGGCTTGACGGTTTTTTTT+TGG | + | tig0039813:10507-10526 | Msa1458800:intron | 35.0% |
| ATAATGATACACGCAAAGAG+TGG | + | tig0039813:10718-10737 | Msa1458800:intron | 35.0% | |
| ! | TTGATGAGCTTCATAGCTTT+TGG | + | tig0039813:10805-10824 | Msa1458800:intron | 35.0% |
| GAGAAAGCAACTTAGGAATT+TGG | + | tig0039813:10880-10899 | Msa1458800:intron | 35.0% | |
| ATTAGTACACTGATAAGCTG+AGG | - | tig0039813:10924-10943 | None:intergenic | 35.0% | |
| AGCAAGCTCAGCATATAATT+TGG | + | tig0039813:11276-11295 | Msa1458800:intron | 35.0% | |
| TGTGAAAAGAAGAGTGAAGA+TGG | + | tig0039813:11464-11483 | Msa1458800:intron | 35.0% | |
| TTTCATACTCTTGAAACTGC+AGG | + | tig0039813:11630-11649 | Msa1458800:intron | 35.0% | |
| ! | CTCAGCATTATTCTCACTTT+TGG | - | tig0039813:11769-11788 | None:intergenic | 35.0% |
| AGTGAGAATAATGCTGAGAT+TGG | + | tig0039813:11771-11790 | Msa1458800:CDS | 35.0% | |
| TCCTTGAAAGACATGAAATC+AGG | + | tig0039813:11987-12006 | Msa1458800:CDS | 35.0% | |
| CCTTGAAAGACATGAAATCA+GGG | + | tig0039813:11988-12007 | Msa1458800:CDS | 35.0% | |
| TCTGTTGTCATGAAAGTGAA+CGG | + | tig0039813:12086-12105 | Msa1458800:CDS | 35.0% | |
| ! | ACGGATTTACTCATTTTCGA+AGG | + | tig0039813:12105-12124 | Msa1458800:CDS | 35.0% |
| GCTATCTATCTCAGTTAGAA+AGG | + | tig0039813:12380-12399 | Msa1458800:three_prime_UTR | 35.0% | |
| AATTGTGTTGTGTTGTGACT+AGG | + | tig0039813:12469-12488 | Msa1458800:three_prime_UTR | 35.0% | |
| CATTGTTGCTGCAGATTACT+AGG | - | tig0039813:6542-6561 | None:intergenic | 40.0% | |
| AATGAAGAGATTGACGGCTA+TGG | - | tig0039813:6591-6610 | None:intergenic | 40.0% | |
| !!! | GATTGAAGTGTGGTTTTGGA+TGG | - | tig0039813:6616-6635 | None:intergenic | 40.0% |
| ! | GTGAGATTGAAGTGTGGTTT+TGG | - | tig0039813:6620-6639 | None:intergenic | 40.0% |
| !! | GAAAGTGTTACCTTGGAAGA+AGG | - | tig0039813:6647-6666 | None:intergenic | 40.0% |
| ! | GAAACTAGAAAAAGGTGTGG+TGG | + | tig0039813:7343-7362 | Msa1458800:intron | 40.0% |
| ATGTCTTCAATCTGCAGTGT+TGG | + | tig0039813:7513-7532 | Msa1458800:intron | 40.0% | |
| !! | AGATTGGTGCAATAGTGGAT+CGG | + | tig0039813:7828-7847 | Msa1458800:intron | 40.0% |
| CAAGAAACTGCAAAAAGGTG+TGG | + | tig0039813:8050-8069 | Msa1458800:intron | 40.0% | |
| GTTGTGAATAGAGACTGTAG+TGG | + | tig0039813:8192-8211 | Msa1458800:intron | 40.0% | |
| GTTGTGAATAGAGACTGTAG+TGG | + | tig0039813:8192-8211 | Msa1458800:intron | 40.0% | |
| ! | GCACCGACACTTCATATTAA+AGG | - | tig0039813:9069-9088 | None:intergenic | 40.0% |
| GCACCGAAACTTCATATTGA+AGG | - | tig0039813:9319-9338 | None:intergenic | 40.0% | |
| TTGTTCCACGATACACTACT+TGG | + | tig0039813:9453-9472 | Msa1458800:intron | 40.0% | |
| TTGTACCAAGTAGTGTATCG+TGG | - | tig0039813:9461-9480 | None:intergenic | 40.0% | |
| CCAAATGACTTCAGCCATTT+AGG | - | tig0039813:9586-9605 | None:intergenic | 40.0% | |
| CCTAAATGGCTGAAGTCATT+TGG | + | tig0039813:9583-9602 | Msa1458800:intron | 40.0% | |
| TAGAAAGATTGGCGCAATAG+TGG | + | tig0039813:9642-9661 | Msa1458800:intron | 40.0% | |
| !!! | CAATCCTTTGAGCTAGCTTT+TGG | + | tig0039813:9892-9911 | Msa1458800:intron | 40.0% |
| ! | TTGGCTCTTATCAAGTTTGC+TGG | + | tig0039813:9951-9970 | Msa1458800:intron | 40.0% |
| ! | CATCAGTGGTCAACCAATTT+TGG | + | tig0039813:9988-10007 | Msa1458800:intron | 40.0% |
| GACTACTGATCCACCAAAAT+TGG | - | tig0039813:10004-10023 | None:intergenic | 40.0% | |
| ! | GAATGCTCTTGGTTAGTTGT+AGG | + | tig0039813:10081-10100 | Msa1458800:intron | 40.0% |
| ! | GTGCTTTGTGCTTTGTTACT+TGG | - | tig0039813:10263-10282 | None:intergenic | 40.0% |
| ! | AAATTAACCTGGCTTTCCAC+AGG | + | tig0039813:10335-10354 | Msa1458800:intron | 40.0% |
| AAAATCCATATGGGAACCTG+TGG | - | tig0039813:10354-10373 | None:intergenic | 40.0% | |
| CACGCAACAACTATCAATAG+AGG | + | tig0039813:10403-10422 | Msa1458800:intron | 40.0% | |
| TGTCAAAACAAGTAAAGGCG+TGG | + | tig0039813:10548-10567 | Msa1458800:intron | 40.0% | |
| ATAGGGAGAGAAAGCAACTT+AGG | + | tig0039813:10873-10892 | Msa1458800:intron | 40.0% | |
| AGTGAGAATGGTATCGTCTA+AGG | - | tig0039813:11211-11230 | None:intergenic | 40.0% | |
| GAACTGCGAGAAAATTGTGA+AGG | + | tig0039813:11326-11345 | Msa1458800:intron | 40.0% | |
| ! | TTCTTTTCACATAACGCAGC+AGG | - | tig0039813:11455-11474 | None:intergenic | 40.0% |
| AAGATGGTTGACCCCTAATA+AGG | + | tig0039813:11480-11499 | Msa1458800:intron | 40.0% | |
| GAAACTGCAGGATATGTTAG+AGG | + | tig0039813:11642-11661 | Msa1458800:intron | 40.0% | |
| !!! | AGGATTTTCGAGTGCAAGTT+GGG | + | tig0039813:11662-11681 | Msa1458800:CDS | 40.0% |
| GAGAATAATGCTGAGATTGG+TGG | + | tig0039813:11774-11793 | Msa1458800:CDS | 40.0% | |
| TGGTGGAAATTCCAGGAAAA+TGG | + | tig0039813:11791-11810 | Msa1458800:CDS | 40.0% | |
| ! | TCTCACAAAGTCCATTTTCC+TGG | - | tig0039813:11805-11824 | None:intergenic | 40.0% |
| ! | AGGAAAATGGACTTTGTGAG+AGG | + | tig0039813:11804-11823 | Msa1458800:CDS | 40.0% |
| !! | GATGAAAAGAGTGTTATGGG+AGG | + | tig0039813:11837-11856 | Msa1458800:CDS | 40.0% |
| CATCATGCTGGAAATGATAC+AGG | - | tig0039813:11875-11894 | None:intergenic | 40.0% | |
| GAACAAAATCAGCATCATGC+TGG | - | tig0039813:11887-11906 | None:intergenic | 40.0% | |
| AGAATCGGTCACTGTAACAA+AGG | - | tig0039813:11934-11953 | None:intergenic | 40.0% | |
| ! | GTTACAGTGACCGATTCTAA+AGG | + | tig0039813:11936-11955 | Msa1458800:CDS | 40.0% |
| CCCTGATTTCATGTCTTTCA+AGG | - | tig0039813:11991-12010 | None:intergenic | 40.0% | |
| AATCAGGGCAAAAGCTTTCT+AGG | + | tig0039813:12003-12022 | Msa1458800:CDS | 40.0% | |
| AAAGGCAAGCAATATTGAGC+TGG | + | tig0039813:12129-12148 | Msa1458800:CDS | 40.0% | |
| !! | AACTAGATACGTCGACTCTT+TGG | - | tig0039813:12245-12264 | None:intergenic | 40.0% |
| GTTGTGACTAGGCTATGTTA+TGG | + | tig0039813:12480-12499 | Msa1458800:three_prime_UTR | 40.0% | |
| AGATTGACGGCTATGGATGA+AGG | - | tig0039813:6584-6603 | None:intergenic | 45.0% | |
| AGTGTTACCTTGGAAGAAGG+TGG | - | tig0039813:6644-6663 | None:intergenic | 45.0% | |
| !! | ATCAGTGTCGGTGTTTGTGT+TGG | - | tig0039813:6906-6925 | None:intergenic | 45.0% |
| ! | GCACCGACACTTCAGATTAA+AGG | - | tig0039813:7264-7283 | None:intergenic | 45.0% |
| AGTTGTAAAGCGCAGATTGC+AGG | - | tig0039813:7736-7755 | None:intergenic | 45.0% | |
| !! | GTGCAATAGTGGATCGGATT+AGG | + | tig0039813:7834-7853 | Msa1458800:intron | 45.0% |
| ! | GAAACTGCAAAAAGGTGTGG+TGG | + | tig0039813:8053-8072 | Msa1458800:intron | 45.0% |
| !! | GCGCAATAGTGGATACGATT+AGG | + | tig0039813:9653-9672 | Msa1458800:intron | 45.0% |
| ACTCCCAAAAGCTAGCTCAA+AGG | - | tig0039813:9899-9918 | None:intergenic | 45.0% | |
| ! | CAGTGGTCAACCAATTTTGG+TGG | + | tig0039813:9991-10010 | Msa1458800:intron | 45.0% |
| GTAGAGTGCAGGATATAGAG+TGG | + | tig0039813:10771-10790 | Msa1458800:intron | 45.0% | |
| TTTGGCATGTCCTAGTGTCA+CGG | + | tig0039813:10898-10917 | Msa1458800:intron | 45.0% | |
| TTCGGAGTGAAGACCCAATT+TGG | + | tig0039813:10945-10964 | Msa1458800:intron | 45.0% | |
| CACAGTTCATGACTCATGAG+AGG | - | tig0039813:11075-11094 | None:intergenic | 45.0% | |
| CGTCACATTGCTTTGCTAGT+TGG | - | tig0039813:11102-11121 | None:intergenic | 45.0% | |
| ATGTGACGTGTGTTGTATCC+AGG | + | tig0039813:11114-11133 | Msa1458800:intron | 45.0% | |
| !! | TATGCTGAGCTTGCTGTTGA+AGG | - | tig0039813:11271-11290 | None:intergenic | 45.0% |
| !!! | GAGGATTTTCGAGTGCAAGT+TGG | + | tig0039813:11661-11680 | Msa1458800:CDS | 45.0% |
| !!! | GGATTTTCGAGTGCAAGTTG+GGG | + | tig0039813:11663-11682 | Msa1458800:CDS | 45.0% |
| CTGAGATTGGTGGAAATTCC+AGG | + | tig0039813:11784-11803 | Msa1458800:CDS | 45.0% | |
| ! | GTAAAACTTAGTGGCTCTGC+TGG | + | tig0039813:11963-11982 | Msa1458800:CDS | 45.0% |
| GCAAGCAATATTGAGCTGGA+GGG | + | tig0039813:12133-12152 | Msa1458800:CDS | 45.0% | |
| !! | GAGGGATTTACTGATTCTCG+AGG | + | tig0039813:12155-12174 | Msa1458800:CDS | 45.0% |
| !!! | TTTTATCATTATTTTTTTAT+TGG | + | tig0039813:6703-6722 | Msa1458800:intron | 5.0% |
| !!! | TTTATCATTATTTTTTTATT+GGG | + | tig0039813:6704-6723 | Msa1458800:intron | 5.0% |
| !!! | ATTTTTAATCTAAAATTTTA+AGG | - | tig0039813:10602-10621 | None:intergenic | 5.0% |
| GGTGGTGTGAGATTGAAGTG+TGG | - | tig0039813:6626-6645 | None:intergenic | 50.0% | |
| TCTCACACCACCTTCTTCCA+AGG | + | tig0039813:6634-6653 | Msa1458800:CDS | 50.0% | |
| GTACCTAGGTTGTGTGTGCT+TGG | + | tig0039813:7880-7899 | Msa1458800:intron | 50.0% | |
| GTCAGTGTCAGTGTCAGCAT+CGG | - | tig0039813:8257-8276 | None:intergenic | 50.0% | |
| AGCAGTGTCCACGTTTGTGT+CGG | - | tig0039813:8721-8740 | None:intergenic | 50.0% | |
| AAACAGGCCCATACTCACCA+GGG | + | tig0039813:9022-9041 | Msa1458800:intron | 50.0% | |
| CAACACACCCTGGTGAGTAT+GGG | - | tig0039813:9032-9051 | None:intergenic | 50.0% | |
| TCAACACACCCTGGTGAGTA+TGG | - | tig0039813:9033-9052 | None:intergenic | 50.0% | |
| TGTTGTCAAGCGCAGATTGC+AGG | - | tig0039813:9557-9576 | None:intergenic | 50.0% | |
| GCTTTCCACAGGTTCCCATA+TGG | + | tig0039813:10346-10365 | Msa1458800:intron | 50.0% | |
| GTGACATCAGTGTAGAGTGC+AGG | + | tig0039813:10760-10779 | Msa1458800:intron | 50.0% | |
| TCACATAACGCAGCAGGCAA+AGG | - | tig0039813:11449-11468 | None:intergenic | 50.0% | |
| ! | AGTGCAAGTTGGGGTTTGAG+CGG | + | tig0039813:11672-11691 | Msa1458800:CDS | 50.0% |
| TGTGAATGCAAGTGCTCGTC+CGG | + | tig0039813:11713-11732 | Msa1458800:CDS | 50.0% | |
| GTATGCTGCTGAAGCAACTG+CGG | + | tig0039813:12025-12044 | Msa1458800:CDS | 50.0% | |
| GGACGGAGATCTAGAGGTTT+AGG | + | tig0039813:12056-12075 | Msa1458800:CDS | 50.0% | |
| GGCAAGCAATATTGAGCTGG+AGG | + | tig0039813:12132-12151 | Msa1458800:CDS | 50.0% | |
| AGCAATATTGAGCTGGAGGG+AGG | + | tig0039813:12136-12155 | Msa1458800:CDS | 50.0% | |
| GCAATATTGAGCTGGAGGGA+GGG | + | tig0039813:12137-12156 | Msa1458800:CDS | 50.0% | |
| ACAACTCGTCGTCCCCATAA+TGG | + | tig0039813:12209-12228 | Msa1458800:CDS | 50.0% | |
| TGGCAGTCTGCAGCCATTAT+GGG | - | tig0039813:12225-12244 | None:intergenic | 50.0% | |
| TTGGCAGTCTGCAGCCATTA+TGG | - | tig0039813:12226-12245 | None:intergenic | 50.0% | |
| GAGCCAAGCACACACAACCT+AGG | - | tig0039813:7886-7905 | None:intergenic | 55.0% | |
| TGTTGTCAAGCGCAGATCGC+AGG | - | tig0039813:8588-8607 | None:intergenic | 55.0% | |
| !! | GTGAAGCACCGACACAAACG+TGG | + | tig0039813:8710-8729 | Msa1458800:intron | 55.0% |
| CTGGTGAGTATGGGCCTGTT+TGG | - | tig0039813:9023-9042 | None:intergenic | 55.0% | |
| CAAACAGGCCCATACTCACC+AGG | + | tig0039813:9021-9040 | Msa1458800:intron | 55.0% | |
| ! | TCGAAGTGCTCAACACACCC+TGG | - | tig0039813:9042-9061 | None:intergenic | 55.0% |
| CACTGCCCAAACTGTCTGAC+AGG | - | tig0039813:10146-10165 | None:intergenic | 55.0% | |
| ATGGGAACCTGTGGAAAGCC+AGG | - | tig0039813:10345-10364 | None:intergenic | 55.0% | |
| TAAGCTGAGGCCGTGACACT+AGG | - | tig0039813:10911-10930 | None:intergenic | 55.0% | |
| ! | GTGCAAGTTGGGGTTTGAGC+GGG | + | tig0039813:11673-11692 | Msa1458800:CDS | 55.0% |
| ! | GTGCTCGTCCGGATTTTCTG+CGG | + | tig0039813:11724-11743 | Msa1458800:CDS | 55.0% |
| ! | TGCTCGTCCGGATTTTCTGC+GGG | + | tig0039813:11725-11744 | Msa1458800:CDS | 55.0% |
| TGCTGAAGCAACTGCGGAAG+TGG | + | tig0039813:12031-12050 | Msa1458800:CDS | 55.0% | |
| GAAGCAACTGCGGAAGTGGT+TGG | + | tig0039813:12035-12054 | Msa1458800:CDS | 55.0% | |
| CAACTGCGGAAGTGGTTGGA+CGG | + | tig0039813:12039-12058 | Msa1458800:CDS | 55.0% | |
| GTGGTTGGACGGAGATCTAG+AGG | + | tig0039813:12050-12069 | Msa1458800:CDS | 55.0% | |
| GGCAGTCTGCAGCCATTATG+GGG | - | tig0039813:12224-12243 | None:intergenic | 55.0% | |
| ! | GCACGTGGGTTGTGTGTGCT+TGG | + | tig0039813:9698-9717 | Msa1458800:intron | 60.0% |
| ! | CAAGTTGGGGTTTGAGCGGG+AGG | + | tig0039813:11676-11695 | Msa1458800:CDS | 60.0% |
| ! | GCTCGTCCGGATTTTCTGCG+GGG | + | tig0039813:11726-11745 | Msa1458800:CDS | 60.0% |
| ! | GTCCGGATTTTCTGCGGGGT+CGG | + | tig0039813:11730-11749 | Msa1458800:CDS | 60.0% |
| ! | TCCGGATTTTCTGCGGGGTC+GGG | + | tig0039813:11731-11750 | Msa1458800:CDS | 60.0% |
| TCCCGACCCCGCAGAAAATC+CGG | - | tig0039813:11735-11754 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0039813 | gene | 6424 | 12545 | 6424 | ID=Msa1458800;Name=Msa1458800 |
| tig0039813 | mRNA | 6424 | 12545 | 6424 | ID=Msa1458800-mRNA-1;Parent=Msa1458800;Name=Msa1458800-mRNA-1;_AED=0.01;_eAED=0.01;_QI=135|1|1|1|1|1|2|283|235 |
| tig0039813 | exon | 6424 | 6655 | 6424 | ID=Msa1458800-mRNA-1:exon:21931;Parent=Msa1458800-mRNA-1 |
| tig0039813 | exon | 11652 | 12545 | 11652 | ID=Msa1458800-mRNA-1:exon:21932;Parent=Msa1458800-mRNA-1 |
| tig0039813 | five_prime_UTR | 6424 | 6558 | 6424 | ID=Msa1458800-mRNA-1:five_prime_utr;Parent=Msa1458800-mRNA-1 |
| tig0039813 | CDS | 6559 | 6655 | 6559 | ID=Msa1458800-mRNA-1:cds;Parent=Msa1458800-mRNA-1 |
| tig0039813 | CDS | 11652 | 12262 | 11652 | ID=Msa1458800-mRNA-1:cds;Parent=Msa1458800-mRNA-1 |
| tig0039813 | three_prime_UTR | 12263 | 12545 | 12263 | ID=Msa1458800-mRNA-1:three_prime_utr;Parent=Msa1458800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
