Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458880 | XP_013455259.2 | 95.317 | 363 | 17 | 0 | 1 | 363 | 1 | 363 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458880 | sp|O24305|M3OM1_PEA | 75.482 | 363 | 86 | 2 | 1 | 363 | 1 | 360 | 0.0 | 566 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458880 | Q06YR0 | 95.317 | 363 | 17 | 0 | 1 | 363 | 1 | 363 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0539600 | Msa1458880 | 0.809441 | 1.889404e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458880 | MtrunA17_Chr4g0014681 | 95.317 | 363 | 17 | 0 | 1 | 363 | 1 | 363 | 0.0 | 694 |
| Msa1458880 | MtrunA17_Chr4g0014561 | 95.041 | 363 | 18 | 0 | 1 | 363 | 1 | 363 | 0.0 | 691 |
| Msa1458880 | MtrunA17_Chr4g0014641 | 91.185 | 363 | 32 | 0 | 1 | 363 | 1 | 363 | 0.0 | 669 |
| Msa1458880 | MtrunA17_Chr4g0046361 | 73.278 | 363 | 95 | 1 | 1 | 363 | 1 | 361 | 0.0 | 562 |
| Msa1458880 | MtrunA17_Chr4g0014661 | 76.860 | 363 | 78 | 1 | 1 | 363 | 1 | 357 | 0.0 | 545 |
| Msa1458880 | MtrunA17_Chr4g0046341 | 75.000 | 364 | 90 | 1 | 1 | 363 | 1 | 364 | 0.0 | 539 |
| Msa1458880 | MtrunA17_Chr4g0014591 | 76.584 | 363 | 79 | 1 | 1 | 363 | 1 | 357 | 0.0 | 523 |
| Msa1458880 | MtrunA17_Chr4g0014601 | 75.188 | 266 | 60 | 1 | 1 | 266 | 1 | 260 | 5.38e-149 | 421 |
| Msa1458880 | MtrunA17_Chr5g0432301 | 51.695 | 354 | 163 | 5 | 11 | 362 | 12 | 359 | 1.66e-125 | 365 |
| Msa1458880 | MtrunA17_Chr5g0432251 | 50.141 | 355 | 169 | 5 | 11 | 363 | 11 | 359 | 2.63e-124 | 362 |
| Msa1458880 | MtrunA17_Chr5g0432241 | 50.141 | 355 | 169 | 5 | 11 | 363 | 12 | 360 | 4.82e-122 | 356 |
| Msa1458880 | MtrunA17_Chr7g0219141 | 47.765 | 358 | 181 | 4 | 6 | 363 | 6 | 357 | 4.42e-120 | 351 |
| Msa1458880 | MtrunA17_Chr7g0219161 | 49.568 | 347 | 167 | 6 | 6 | 351 | 6 | 345 | 2.30e-117 | 344 |
| Msa1458880 | MtrunA17_Chr1g0188391 | 49.030 | 361 | 176 | 6 | 6 | 363 | 6 | 361 | 3.37e-117 | 344 |
| Msa1458880 | MtrunA17_Chr7g0223231 | 46.910 | 356 | 177 | 4 | 6 | 361 | 5 | 348 | 9.38e-116 | 340 |
| Msa1458880 | MtrunA17_Chr4g0046531 | 52.125 | 353 | 160 | 4 | 11 | 362 | 11 | 355 | 6.75e-115 | 350 |
| Msa1458880 | MtrunA17_Chr4g0046531 | 50.565 | 354 | 166 | 4 | 11 | 363 | 373 | 718 | 1.19e-111 | 341 |
| Msa1458880 | MtrunA17_Chr5g0432261 | 48.442 | 353 | 150 | 3 | 11 | 363 | 7 | 327 | 7.39e-115 | 337 |
| Msa1458880 | MtrunA17_Chr7g0223241 | 47.753 | 356 | 174 | 4 | 6 | 361 | 5 | 348 | 1.15e-112 | 332 |
| Msa1458880 | MtrunA17_Chr5g0432211 | 46.761 | 355 | 167 | 6 | 11 | 363 | 11 | 345 | 2.38e-110 | 326 |
| Msa1458880 | MtrunA17_Chr4g0040621 | 46.610 | 354 | 180 | 3 | 11 | 363 | 24 | 369 | 3.80e-110 | 326 |
| Msa1458880 | MtrunA17_Chr1g0188371 | 46.313 | 339 | 171 | 6 | 9 | 343 | 9 | 340 | 8.26e-96 | 290 |
| Msa1458880 | MtrunA17_Chr3g0121301 | 37.901 | 343 | 198 | 9 | 20 | 359 | 27 | 357 | 1.21e-63 | 206 |
| Msa1458880 | MtrunA17_Chr4g0021981 | 35.616 | 365 | 221 | 8 | 3 | 363 | 14 | 368 | 1.65e-60 | 199 |
| Msa1458880 | MtrunA17_Chr4g0022021 | 35.068 | 365 | 223 | 8 | 3 | 363 | 14 | 368 | 1.86e-58 | 193 |
| Msa1458880 | MtrunA17_Chr7g0219171 | 54.930 | 142 | 63 | 1 | 222 | 363 | 108 | 248 | 3.11e-48 | 163 |
| Msa1458880 | MtrunA17_Chr7g0219171 | 47.009 | 117 | 55 | 1 | 6 | 122 | 6 | 115 | 9.50e-29 | 112 |
| Msa1458880 | MtrunA17_Chr7g0218301 | 32.845 | 341 | 208 | 10 | 32 | 361 | 40 | 370 | 1.14e-46 | 162 |
| Msa1458880 | MtrunA17_Chr7g0218181 | 31.195 | 343 | 208 | 10 | 32 | 362 | 40 | 366 | 9.94e-46 | 160 |
| Msa1458880 | MtrunA17_Chr7g0218271 | 32.258 | 341 | 210 | 11 | 32 | 361 | 40 | 370 | 1.35e-45 | 160 |
| Msa1458880 | MtrunA17_Chr7g0218131 | 31.657 | 338 | 216 | 9 | 32 | 362 | 40 | 369 | 4.08e-45 | 158 |
| Msa1458880 | MtrunA17_Chr8g0367501 | 33.060 | 366 | 226 | 11 | 6 | 361 | 4 | 360 | 5.95e-45 | 159 |
| Msa1458880 | MtrunA17_Chr1g0163611 | 31.412 | 347 | 222 | 8 | 25 | 362 | 30 | 369 | 1.63e-44 | 157 |
| Msa1458880 | MtrunA17_Chr1g0163601 | 31.532 | 333 | 214 | 7 | 25 | 350 | 30 | 355 | 2.72e-44 | 156 |
| Msa1458880 | MtrunA17_Chr7g0218261 | 32.036 | 334 | 214 | 8 | 32 | 361 | 39 | 363 | 1.75e-43 | 154 |
| Msa1458880 | MtrunA17_Chr1g0200491 | 31.692 | 325 | 208 | 7 | 32 | 349 | 40 | 357 | 2.01e-43 | 154 |
| Msa1458880 | MtrunA17_Chr5g0448091 | 34.132 | 334 | 199 | 12 | 31 | 355 | 33 | 354 | 3.29e-42 | 150 |
| Msa1458880 | MtrunA17_Chr8g0367441 | 33.231 | 325 | 204 | 8 | 26 | 344 | 41 | 358 | 9.88e-42 | 150 |
| Msa1458880 | MtrunA17_Chr2g0307521 | 31.343 | 335 | 215 | 9 | 32 | 361 | 34 | 358 | 2.57e-41 | 148 |
| Msa1458880 | MtrunA17_Chr7g0218211 | 31.940 | 335 | 214 | 8 | 32 | 361 | 39 | 364 | 5.07e-41 | 147 |
| Msa1458880 | MtrunA17_Chr8g0367451 | 33.231 | 325 | 204 | 8 | 26 | 344 | 40 | 357 | 1.33e-40 | 147 |
| Msa1458880 | MtrunA17_Chr7g0276401 | 32.047 | 337 | 205 | 9 | 26 | 353 | 42 | 363 | 2.97e-40 | 145 |
| Msa1458880 | MtrunA17_Chr8g0367491 | 31.751 | 337 | 216 | 9 | 26 | 355 | 40 | 369 | 7.47e-40 | 145 |
| Msa1458880 | MtrunA17_Chr7g0276411 | 31.915 | 329 | 211 | 8 | 26 | 348 | 26 | 347 | 2.33e-39 | 143 |
| Msa1458880 | MtrunA17_Chr2g0314271 | 31.751 | 337 | 211 | 8 | 31 | 360 | 27 | 351 | 6.25e-39 | 142 |
| Msa1458880 | MtrunA17_Chr1g0163621 | 30.030 | 333 | 219 | 7 | 25 | 350 | 44 | 369 | 1.64e-38 | 141 |
| Msa1458880 | MtrunA17_Chr3g0085211 | 32.416 | 327 | 209 | 8 | 28 | 350 | 38 | 356 | 4.50e-38 | 140 |
| Msa1458880 | MtrunA17_Chr3g0128011 | 31.692 | 325 | 207 | 9 | 31 | 349 | 88 | 403 | 1.04e-36 | 137 |
| Msa1458880 | MtrunA17_Chr4g0014611 | 80.000 | 100 | 20 | 0 | 264 | 363 | 8 | 107 | 2.45e-36 | 127 |
| Msa1458880 | MtrunA17_Chr3g0130011 | 30.747 | 348 | 219 | 11 | 23 | 362 | 24 | 357 | 7.01e-35 | 131 |
| Msa1458880 | MtrunA17_Chr8g0345851 | 34.118 | 255 | 159 | 5 | 98 | 350 | 30 | 277 | 1.78e-34 | 128 |
| Msa1458880 | MtrunA17_Chr8g0367381 | 31.613 | 310 | 182 | 8 | 26 | 330 | 41 | 325 | 1.86e-34 | 129 |
| Msa1458880 | MtrunA17_Chr3g0085201 | 30.341 | 323 | 213 | 8 | 32 | 350 | 29 | 343 | 7.77e-34 | 128 |
| Msa1458880 | MtrunA17_Chr3g0130061 | 28.986 | 345 | 225 | 10 | 23 | 360 | 24 | 355 | 9.44e-31 | 120 |
| Msa1458880 | MtrunA17_Chr4g0014671 | 77.143 | 105 | 24 | 0 | 259 | 363 | 30 | 134 | 1.69e-28 | 107 |
| Msa1458880 | MtrunA17_Chr4g0014621 | 78.788 | 66 | 14 | 0 | 298 | 363 | 197 | 262 | 3.34e-21 | 91.7 |
| Msa1458880 | MtrunA17_Chr8g0367461 | 42.593 | 108 | 57 | 3 | 250 | 355 | 1 | 105 | 3.49e-19 | 82.0 |
| Msa1458880 | MtrunA17_Chr6g0482291 | 30.814 | 172 | 107 | 3 | 178 | 348 | 1 | 161 | 1.32e-18 | 82.4 |
| Msa1458880 | MtrunA17_Chr4g0014551 | 100.000 | 44 | 0 | 0 | 320 | 363 | 1 | 44 | 7.52e-16 | 70.9 |
| Msa1458880 | MtrunA17_Chr8g0367401 | 35.135 | 111 | 70 | 1 | 153 | 263 | 2 | 110 | 7.95e-15 | 70.9 |
| Msa1458880 | MtrunA17_Chr4g0011691 | 36.434 | 129 | 71 | 4 | 6 | 134 | 16 | 133 | 3.80e-14 | 71.2 |
| Msa1458880 | MtrunA17_Chr4g0011691 | 42.708 | 96 | 51 | 3 | 265 | 359 | 140 | 232 | 1.50e-13 | 69.7 |
| Msa1458880 | MtrunA17_Chr1g0170941 | 45.455 | 66 | 36 | 0 | 196 | 261 | 11 | 76 | 4.37e-12 | 61.2 |
| Msa1458880 | MtrunA17_Chr8g0367391 | 34.746 | 118 | 70 | 4 | 234 | 348 | 6 | 119 | 7.67e-12 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1458880 | AT4G35160.1 | 33.425 | 365 | 212 | 12 | 16 | 362 | 29 | 380 | 1.48e-47 | 166 |
| Msa1458880 | AT4G35150.1 | 30.447 | 358 | 189 | 10 | 16 | 362 | 15 | 323 | 4.24e-47 | 163 |
| Msa1458880 | AT5G54160.1 | 33.131 | 329 | 197 | 8 | 31 | 350 | 34 | 348 | 2.69e-42 | 151 |
| Msa1458880 | AT1G77520.1 | 31.977 | 344 | 215 | 9 | 31 | 362 | 44 | 380 | 1.24e-41 | 150 |
| Msa1458880 | AT3G53140.1 | 33.430 | 344 | 201 | 13 | 31 | 360 | 27 | 356 | 1.26e-39 | 144 |
| Msa1458880 | AT1G51990.2 | 31.579 | 342 | 212 | 11 | 33 | 363 | 32 | 362 | 4.00e-39 | 143 |
| Msa1458880 | AT1G51990.1 | 31.884 | 345 | 207 | 12 | 33 | 363 | 32 | 362 | 3.39e-38 | 140 |
| Msa1458880 | AT1G33030.1 | 30.120 | 332 | 213 | 10 | 31 | 353 | 21 | 342 | 5.09e-37 | 137 |
| Msa1458880 | AT5G53810.1 | 30.259 | 347 | 222 | 9 | 29 | 362 | 38 | 377 | 2.04e-34 | 130 |
| Msa1458880 | AT1G77530.1 | 33.140 | 344 | 211 | 9 | 31 | 362 | 44 | 380 | 3.35e-34 | 130 |
| Msa1458880 | AT1G63140.2 | 28.919 | 370 | 239 | 11 | 9 | 362 | 19 | 380 | 3.46e-32 | 124 |
| Msa1458880 | AT1G63140.4 | 28.919 | 370 | 239 | 11 | 9 | 362 | 39 | 400 | 4.52e-32 | 124 |
| Msa1458880 | AT1G76790.1 | 28.302 | 371 | 216 | 16 | 7 | 355 | 9 | 351 | 1.29e-26 | 109 |
| Msa1458880 | AT1G21130.1 | 27.515 | 338 | 210 | 13 | 31 | 350 | 40 | 360 | 2.14e-24 | 103 |
| Msa1458880 | AT1G21100.1 | 27.083 | 336 | 214 | 12 | 31 | 350 | 40 | 360 | 8.98e-24 | 101 |
| Msa1458880 | AT1G62900.1 | 33.854 | 192 | 122 | 3 | 173 | 362 | 16 | 204 | 1.58e-23 | 97.1 |
| Msa1458880 | AT1G21110.1 | 26.586 | 331 | 212 | 12 | 31 | 345 | 40 | 355 | 2.94e-23 | 100 |
| Msa1458880 | AT5G37170.2 | 31.443 | 194 | 127 | 4 | 172 | 362 | 43 | 233 | 2.31e-22 | 94.7 |
| Msa1458880 | AT5G37170.1 | 31.443 | 194 | 127 | 4 | 172 | 362 | 143 | 333 | 3.86e-22 | 96.3 |
| Msa1458880 | AT1G21120.1 | 26.190 | 336 | 217 | 12 | 31 | 350 | 40 | 360 | 4.35e-22 | 96.7 |
| Msa1458880 | AT1G21120.2 | 26.190 | 336 | 217 | 12 | 31 | 350 | 88 | 408 | 7.69e-22 | 96.3 |
| Msa1458880 | AT5G37170.3 | 34.104 | 173 | 105 | 5 | 194 | 360 | 14 | 183 | 6.16e-21 | 89.7 |
| Msa1458880 | AT1G33030.2 | 27.197 | 239 | 161 | 7 | 31 | 263 | 21 | 252 | 4.47e-16 | 77.8 |
| Msa1458880 | AT1G33030.3 | 27.197 | 239 | 161 | 7 | 31 | 263 | 21 | 252 | 8.86e-16 | 77.0 |
| Msa1458880 | AT1G63140.1 | 26.394 | 269 | 179 | 8 | 9 | 263 | 39 | 302 | 3.86e-14 | 72.8 |
Find 66 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATTCTCCAATATCTTTA+AGG | 0.080504 | tig0039898:-1314 | Msa1458880:intergenic |
| GCGCAAGAGGAGAGTCATTT+TGG | 0.126492 | tig0039898:+569 | Msa1458880:CDS |
| ATGATGATGACTTTGTTAAA+TGG | 0.247172 | tig0039898:+1451 | Msa1458880:CDS |
| TGAATTATCCTTAAAGATAT+TGG | 0.263747 | tig0039898:+1306 | Msa1458880:CDS |
| TAAAACAAATGAGTTGAAAT+TGG | 0.270517 | tig0039898:+1417 | Msa1458880:CDS |
| TGTATATATGTTTGTATAGA+TGG | 0.289789 | tig0039898:-168 | Msa1458880:intergenic |
| TTCAGTGAGCCATTTCTTAG+AGG | 0.326776 | tig0039898:-521 | Msa1458880:intergenic |
| TACAGTGGATTCTGCATGAT+TGG | 0.329305 | tig0039898:+1278 | Msa1458880:intron |
| CTTAACAAAGATTCTGAATC+TGG | 0.352374 | tig0039898:+598 | Msa1458880:CDS |
| GCTAATTCAGTAAGAGTCAT+TGG | 0.368956 | tig0039898:-265 | Msa1458880:intergenic |
| TAGCCATGTGTTTGAAGGTT+TGG | 0.381600 | tig0039898:+690 | Msa1458880:CDS |
| AAGAAAGAGAGAAGAAAGAA+TGG | 0.382447 | tig0039898:+1476 | Msa1458880:CDS |
| GTTGATGTTGGAGGTGGGAG+AGG | 0.383792 | tig0039898:+721 | Msa1458880:CDS |
| GATGAAAATTTGAAATTTGT+TGG | 0.393974 | tig0039898:+832 | Msa1458880:CDS |
| GTTTGAAGGTTTGGAGTCTC+TGG | 0.426025 | tig0039898:+699 | Msa1458880:CDS |
| TGAGGTCAGGAAAAGCTTCA+TGG | 0.428682 | tig0039898:-762 | Msa1458880:intergenic |
| CAAACACATGGCTACACTCT+TGG | 0.432380 | tig0039898:-681 | Msa1458880:intergenic |
| GAGTGTAGCCATGTGTTTGA+AGG | 0.433859 | tig0039898:+685 | Msa1458880:CDS |
| GATGTTGGAGGTGGGAGAGG+AGG | 0.449491 | tig0039898:+724 | Msa1458880:CDS |
| TCTCTGGTTGATGTTGGAGG+TGG | 0.463565 | tig0039898:+715 | Msa1458880:CDS |
| AATACTGTGCATTTGAGGTC+AGG | 0.467274 | tig0039898:-775 | Msa1458880:intergenic |
| TGTGGCACTCCTCTAAGAAA+TGG | 0.479752 | tig0039898:+512 | Msa1458880:CDS |
| CTCAAATCAGCCGTGGAACT+AGG | 0.484791 | tig0039898:+211 | Msa1458880:CDS |
| GGTCAAATACTGTGCATTTG+AGG | 0.486795 | tig0039898:-780 | Msa1458880:intergenic |
| CCACTGATAAGAAGCATTGA+AGG | 0.488410 | tig0039898:-430 | Msa1458880:intergenic |
| AGAAAGAGAGAAGAAAGAAT+GGG | 0.494469 | tig0039898:+1477 | Msa1458880:CDS |
| TTGGAGTCTCTGGTTGATGT+TGG | 0.495110 | tig0039898:+709 | Msa1458880:CDS |
| CAGGTTGTAAGTAACTTGTC+TGG | 0.502887 | tig0039898:+808 | Msa1458880:CDS |
| GAGTCTCTGGTTGATGTTGG+AGG | 0.503583 | tig0039898:+712 | Msa1458880:CDS |
| GCAAACGCAAGAGACGATAA+AGG | 0.507273 | tig0039898:-324 | Msa1458880:intergenic |
| TGAAGCACTCCGCTAACAAA+TGG | 0.512286 | tig0039898:-472 | Msa1458880:intergenic |
| ACACTGATGAATGGCAAAGA+AGG | 0.516027 | tig0039898:+376 | Msa1458880:CDS |
| CACGGCTGATTTGAGTGCCA+TGG | 0.517659 | tig0039898:-203 | Msa1458880:intergenic |
| AGCCTCTTTGAGAGCGCAAG+AGG | 0.519554 | tig0039898:+556 | Msa1458880:CDS |
| ATCTGCTATGCCTAGTTCCA+CGG | 0.523313 | tig0039898:-221 | Msa1458880:intergenic |
| ATAGACTTGAAGCCACATAT+AGG | 0.526187 | tig0039898:-1544 | Msa1458880:intergenic |
| CTCTGGTTGATGTTGGAGGT+GGG | 0.527669 | tig0039898:+716 | Msa1458880:CDS |
| GAAAATTTGAAATTTGTTGG+TGG | 0.531638 | tig0039898:+835 | Msa1458880:CDS |
| TGTTTGTCACCATTTGTTAG+CGG | 0.537198 | tig0039898:+463 | Msa1458880:CDS |
| GGCTACACTCTTGGAGTGCA+AGG | 0.538863 | tig0039898:-672 | Msa1458880:intergenic |
| GCGAAAACAACACTGATGAA+TGG | 0.541866 | tig0039898:+367 | Msa1458880:CDS |
| GAGTATGTTTCAAGAGGCCA+TGG | 0.546582 | tig0039898:+627 | Msa1458880:CDS |
| ATACAGCTTTATAAATTCCA+TGG | 0.553200 | tig0039898:+186 | Msa1458880:CDS |
| ATCCATGTCGTCTGAACATG+TGG | 0.556197 | tig0039898:+494 | Msa1458880:CDS |
| TACAAGATTACACCTATATG+TGG | 0.556787 | tig0039898:+1532 | Msa1458880:CDS |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | tig0039898:-880 | Msa1458880:intergenic |
| GACAAGTTACTTACAACCTG+TGG | 0.570330 | tig0039898:-805 | Msa1458880:intergenic |
| CACAGTATTTGACCAACCAC+AGG | 0.579462 | tig0039898:+789 | Msa1458880:CDS |
| CCTTCAATGCTTCTTATCAG+TGG | 0.583998 | tig0039898:+430 | Msa1458880:CDS |
| GATCTGAGAATCAGCAGCCA+TGG | 0.587279 | tig0039898:-644 | None:intergenic |
| CAAATGGATTTCAAGTGCAA+TGG | 0.588515 | tig0039898:+112 | None:intergenic |
| CTCCTCTTGCGCTCTCAAAG+AGG | 0.594171 | tig0039898:-558 | Msa1458880:intergenic |
| TGCCACATGTTCAGACGACA+TGG | 0.594397 | tig0039898:-496 | Msa1458880:intergenic |
| TGAATTGAGTATGTTTCAAG+AGG | 0.600938 | tig0039898:+621 | Msa1458880:CDS |
| TAAAGGACACTAACTTTCGA+AGG | 0.602158 | tig0039898:-307 | Msa1458880:intergenic |
| TTGCGTTTGCTAACACACAA+TGG | 0.605432 | tig0039898:+337 | Msa1458880:CDS |
| GGACACTAACTTTCGAAGGG+TGG | 0.614681 | tig0039898:-303 | Msa1458880:intergenic |
| AGTTACTTACAACCTGTGGT+TGG | 0.628024 | tig0039898:-801 | Msa1458880:intergenic |
| GAGAAACTCATATTTGACGC+AGG | 0.638948 | tig0039898:+1499 | Msa1458880:CDS |
| CATGGCACTCAAATCAGCCG+TGG | 0.640463 | tig0039898:+204 | Msa1458880:CDS |
| GAAATGGCTCACTGAAGACA+AGG | 0.641674 | tig0039898:+528 | Msa1458880:CDS |
| GCAGATGCAATCCACAACCA+TGG | 0.642290 | tig0039898:+238 | Msa1458880:CDS |
| AAAGGACACTAACTTTCGAA+GGG | 0.667819 | tig0039898:-306 | Msa1458870:intergenic |
| AGTAAAACAGCATCTGCAGG+AGG | 0.673163 | tig0039898:-877 | Msa1458870:intergenic |
| ACTCCAAACCTTCAAACACA+TGG | 0.677292 | tig0039898:-693 | Msa1458870:intergenic |
| CTGATAAGAAGCATTGAAGG+AGG | 0.689900 | tig0039898:-427 | Msa1458870:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTAAAAGATATATTTTTTT+TGG | + | tig0039898:925-944 | Msa1458880:intron | 10.0% |
| !!! | AGTAAAAGATATATTTTTTT+TGG | + | tig0039898:925-944 | Msa1458880:intron | 10.0% |
| !!! | TAAAATCATTTTTTTTACAG+TGG | + | tig0039898:1263-1282 | Msa1458880:intron | 15.0% |
| !!! | TAAAATCATTTTTTTTACAG+TGG | + | tig0039898:1263-1282 | Msa1458880:intron | 15.0% |
| !! | TGTATATATGTTTGTATAGA+TGG | - | tig0039898:171-190 | Msa1390100:intergenic | 20.0% |
| !!! | GATGAAAATTTGAAATTTGT+TGG | + | tig0039898:832-851 | Msa1458880:CDS | 20.0% |
| !!! | TATCTTTTACTCATAACATT+TGG | - | tig0039898:916-935 | Msa1458880:intergenic | 20.0% |
| !!! | GAGTAATTTTCTTATGTTAT+TGG | + | tig0039898:1114-1133 | Msa1458880:intron | 20.0% |
| !! | TAATTAGTCATCAACAAAAT+TGG | - | tig0039898:1154-1173 | Msa1458880:intergenic | 20.0% |
| !! | TGAATTATCCTTAAAGATAT+TGG | + | tig0039898:1306-1325 | Msa1458880:CDS | 20.0% |
| !!! | TAAAACAAATGAGTTGAAAT+TGG | + | tig0039898:1417-1436 | Msa1458880:CDS | 20.0% |
| !! | TGTATATATGTTTGTATAGA+TGG | - | tig0039898:171-190 | Msa1458880:intergenic | 20.0% |
| !!! | GATGAAAATTTGAAATTTGT+TGG | + | tig0039898:832-851 | Msa1458880:CDS | 20.0% |
| !!! | TATCTTTTACTCATAACATT+TGG | - | tig0039898:916-935 | Msa1458880:intergenic | 20.0% |
| !!! | GAGTAATTTTCTTATGTTAT+TGG | + | tig0039898:1114-1133 | Msa1458880:intron | 20.0% |
| !! | TAATTAGTCATCAACAAAAT+TGG | - | tig0039898:1154-1173 | Msa1458880:intergenic | 20.0% |
| !! | TGAATTATCCTTAAAGATAT+TGG | + | tig0039898:1306-1325 | Msa1458880:CDS | 20.0% |
| !!! | TAAAACAAATGAGTTGAAAT+TGG | + | tig0039898:1417-1436 | Msa1458880:CDS | 20.0% |
| !! | ATACAGCTTTATAAATTCCA+TGG | + | tig0039898:186-205 | Msa1458880:CDS | 25.0% |
| !!! | GAAAATTTGAAATTTGTTGG+TGG | + | tig0039898:835-854 | Msa1458880:CDS | 25.0% |
| ! | GTCGTTGATATAAAAGAATA+TGG | - | tig0039898:975-994 | Msa1458880:intergenic | 25.0% |
| !! | TTCTTTTATATCAACGACAT+CGG | + | tig0039898:977-996 | Msa1458880:intron | 25.0% |
| !!! | TTAAATGTTAAAAGTGTCAG+CGG | - | tig0039898:1013-1032 | Msa1458880:intergenic | 25.0% |
| !!! | TGTTGATGACTAATTAATCT+TGG | + | tig0039898:1158-1177 | Msa1458880:intron | 25.0% |
| !! | AATTGCAAAAAAGCTATTTC+AGG | + | tig0039898:1331-1350 | Msa1458880:CDS | 25.0% |
| !! | AAAAAAGCTATTTCAGGAAA+AGG | + | tig0039898:1337-1356 | Msa1458880:CDS | 25.0% |
| !! | AAAAAGCTATTTCAGGAAAA+GGG | + | tig0039898:1338-1357 | Msa1458880:CDS | 25.0% |
| !! | ATGATGATGACTTTGTTAAA+TGG | + | tig0039898:1451-1470 | Msa1458880:CDS | 25.0% |
| !! | ATACAGCTTTATAAATTCCA+TGG | + | tig0039898:186-205 | Msa1458880:CDS | 25.0% |
| !!! | GAAAATTTGAAATTTGTTGG+TGG | + | tig0039898:835-854 | Msa1458880:CDS | 25.0% |
| ! | GTCGTTGATATAAAAGAATA+TGG | - | tig0039898:975-994 | Msa1458880:intergenic | 25.0% |
| !! | TTCTTTTATATCAACGACAT+CGG | + | tig0039898:977-996 | Msa1458880:intron | 25.0% |
| !!! | TTAAATGTTAAAAGTGTCAG+CGG | - | tig0039898:1013-1032 | Msa1458880:intergenic | 25.0% |
| !!! | TGTTGATGACTAATTAATCT+TGG | + | tig0039898:1158-1177 | Msa1458880:intron | 25.0% |
| !! | AATTGCAAAAAAGCTATTTC+AGG | + | tig0039898:1331-1350 | Msa1458880:CDS | 25.0% |
| !! | AAAAAAGCTATTTCAGGAAA+AGG | + | tig0039898:1337-1356 | Msa1458880:CDS | 25.0% |
| !! | AAAAAGCTATTTCAGGAAAA+GGG | + | tig0039898:1338-1357 | Msa1458880:CDS | 25.0% |
| !! | ATGATGATGACTTTGTTAAA+TGG | + | tig0039898:1451-1470 | Msa1458880:CDS | 25.0% |
| CTTAACAAAGATTCTGAATC+TGG | + | tig0039898:598-617 | Msa1458880:CDS | 30.0% | |
| TGAATTGAGTATGTTTCAAG+AGG | + | tig0039898:621-640 | Msa1458880:CDS | 30.0% | |
| TTAGAAATTTCGTAACTGAG+AGG | + | tig0039898:1092-1111 | Msa1458880:intron | 30.0% | |
| GCAATTCTCCAATATCTTTA+AGG | - | tig0039898:1317-1336 | Msa1458880:intergenic | 30.0% | |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | tig0039898:1346-1365 | Msa1458880:CDS | 30.0% | |
| AAGAAAGAGAGAAGAAAGAA+TGG | + | tig0039898:1476-1495 | Msa1458880:CDS | 30.0% | |
| AGAAAGAGAGAAGAAAGAAT+GGG | + | tig0039898:1477-1496 | Msa1458880:CDS | 30.0% | |
| TACAAGATTACACCTATATG+TGG | + | tig0039898:1532-1551 | Msa1458880:CDS | 30.0% | |
| CTTAACAAAGATTCTGAATC+TGG | + | tig0039898:598-617 | Msa1458880:CDS | 30.0% | |
| TGAATTGAGTATGTTTCAAG+AGG | + | tig0039898:621-640 | Msa1458880:CDS | 30.0% | |
| TTAGAAATTTCGTAACTGAG+AGG | + | tig0039898:1092-1111 | Msa1458880:intron | 30.0% | |
| GCAATTCTCCAATATCTTTA+AGG | - | tig0039898:1317-1336 | Msa1458880:intergenic | 30.0% | |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | tig0039898:1346-1365 | Msa1458880:CDS | 30.0% | |
| AAGAAAGAGAGAAGAAAGAA+TGG | + | tig0039898:1476-1495 | Msa1458880:CDS | 30.0% | |
| AGAAAGAGAGAAGAAAGAAT+GGG | + | tig0039898:1477-1496 | Msa1458880:CDS | 30.0% | |
| TACAAGATTACACCTATATG+TGG | + | tig0039898:1532-1551 | Msa1458880:CDS | 30.0% | |
| !!! | TAAGAGTCATTGGTTTTCCA+TGG | - | tig0039898:258-277 | Msa1458880:intergenic | 35.0% |
| GCTAATTCAGTAAGAGTCAT+TGG | - | tig0039898:268-287 | Msa1458880:intergenic | 35.0% | |
| AAAGGACACTAACTTTCGAA+GGG | - | tig0039898:309-328 | Msa1458880:intergenic | 35.0% | |
| TAAAGGACACTAACTTTCGA+AGG | - | tig0039898:310-329 | Msa1458880:intergenic | 35.0% | |
| ! | TGTTTGTCACCATTTGTTAG+CGG | + | tig0039898:463-482 | Msa1458880:CDS | 35.0% |
| CAGAACTGTCACTAATCTAA+GGG | + | tig0039898:1067-1086 | Msa1458880:intron | 35.0% | |
| AGGAAAAGGGAAAAAAGGAA+AGG | + | tig0039898:1351-1370 | Msa1458880:CDS | 35.0% | |
| ATAGACTTGAAGCCACATAT+AGG | - | tig0039898:1547-1566 | Msa1458880:intergenic | 35.0% | |
| !!! | TAAGAGTCATTGGTTTTCCA+TGG | - | tig0039898:258-277 | Msa1458880:intergenic | 35.0% |
| GCTAATTCAGTAAGAGTCAT+TGG | - | tig0039898:268-287 | Msa1458880:intergenic | 35.0% | |
| AAAGGACACTAACTTTCGAA+GGG | - | tig0039898:309-328 | Msa1458880:intergenic | 35.0% | |
| TAAAGGACACTAACTTTCGA+AGG | - | tig0039898:310-329 | Msa1458880:intergenic | 35.0% | |
| ! | TGTTTGTCACCATTTGTTAG+CGG | + | tig0039898:463-482 | Msa1458880:CDS | 35.0% |
| CAGAACTGTCACTAATCTAA+GGG | + | tig0039898:1067-1086 | Msa1458880:intron | 35.0% | |
| AGGAAAAGGGAAAAAAGGAA+AGG | + | tig0039898:1351-1370 | Msa1458880:CDS | 35.0% | |
| ATAGACTTGAAGCCACATAT+AGG | - | tig0039898:1547-1566 | Msa1458880:intergenic | 35.0% | |
| !!! | TCATTGGTTTTCCATGGTTG+TGG | - | tig0039898:252-271 | Msa1458880:intergenic | 40.0% |
| ! | TTGCGTTTGCTAACACACAA+TGG | + | tig0039898:337-356 | Msa1458880:CDS | 40.0% |
| GCGAAAACAACACTGATGAA+TGG | + | tig0039898:367-386 | Msa1458880:CDS | 40.0% | |
| ACACTGATGAATGGCAAAGA+AGG | + | tig0039898:376-395 | Msa1458880:CDS | 40.0% | |
| !! | CTGATAAGAAGCATTGAAGG+AGG | - | tig0039898:430-449 | Msa1458880:intergenic | 40.0% |
| !! | CCACTGATAAGAAGCATTGA+AGG | - | tig0039898:433-452 | Msa1458880:intergenic | 40.0% |
| CCTTCAATGCTTCTTATCAG+TGG | + | tig0039898:430-449 | Msa1458880:CDS | 40.0% | |
| TTCAGTGAGCCATTTCTTAG+AGG | - | tig0039898:524-543 | Msa1458880:intergenic | 40.0% | |
| TAGCCATGTGTTTGAAGGTT+TGG | + | tig0039898:690-709 | Msa1458880:CDS | 40.0% | |
| ACTCCAAACCTTCAAACACA+TGG | - | tig0039898:696-715 | Msa1458880:intergenic | 40.0% | |
| ! | AATACTGTGCATTTGAGGTC+AGG | - | tig0039898:778-797 | Msa1458880:intergenic | 40.0% |
| GGTCAAATACTGTGCATTTG+AGG | - | tig0039898:783-802 | Msa1458880:intergenic | 40.0% | |
| AGTTACTTACAACCTGTGGT+TGG | - | tig0039898:804-823 | Msa1458880:intergenic | 40.0% | |
| GACAAGTTACTTACAACCTG+TGG | - | tig0039898:808-827 | Msa1458880:intergenic | 40.0% | |
| ! | CAGGTTGTAAGTAACTTGTC+TGG | + | tig0039898:808-827 | Msa1458880:CDS | 40.0% |
| TTGAGTAAAACAGCATCTGC+AGG | - | tig0039898:883-902 | Msa1458880:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | tig0039898:882-901 | Msa1458880:CDS | 40.0% |
| TCAACGACATCGGTAGTTAA+CGG | + | tig0039898:987-1006 | Msa1458880:intron | 40.0% | |
| !! | ACCGATCTTAAAAGTGTCAG+CGG | + | tig0039898:1044-1063 | Msa1458880:intron | 40.0% |
| GCAGAACTGTCACTAATCTA+AGG | + | tig0039898:1066-1085 | Msa1458880:intron | 40.0% | |
| ! | TACAGTGGATTCTGCATGAT+TGG | + | tig0039898:1278-1297 | Msa1458880:intron | 40.0% |
| GAGAAACTCATATTTGACGC+AGG | + | tig0039898:1499-1518 | Msa1458880:CDS | 40.0% | |
| !!! | TCATTGGTTTTCCATGGTTG+TGG | - | tig0039898:252-271 | Msa1458880:intergenic | 40.0% |
| ! | TTGCGTTTGCTAACACACAA+TGG | + | tig0039898:337-356 | Msa1458880:CDS | 40.0% |
| GCGAAAACAACACTGATGAA+TGG | + | tig0039898:367-386 | Msa1458880:CDS | 40.0% | |
| ACACTGATGAATGGCAAAGA+AGG | + | tig0039898:376-395 | Msa1458880:CDS | 40.0% | |
| !! | CTGATAAGAAGCATTGAAGG+AGG | - | tig0039898:430-449 | Msa1458880:intergenic | 40.0% |
| !! | CCACTGATAAGAAGCATTGA+AGG | - | tig0039898:433-452 | Msa1458880:intergenic | 40.0% |
| CCTTCAATGCTTCTTATCAG+TGG | + | tig0039898:430-449 | Msa1458880:CDS | 40.0% | |
| TTCAGTGAGCCATTTCTTAG+AGG | - | tig0039898:524-543 | Msa1458880:intergenic | 40.0% | |
| TAGCCATGTGTTTGAAGGTT+TGG | + | tig0039898:690-709 | Msa1458880:CDS | 40.0% | |
| ACTCCAAACCTTCAAACACA+TGG | - | tig0039898:696-715 | Msa1458880:intergenic | 40.0% | |
| ! | AATACTGTGCATTTGAGGTC+AGG | - | tig0039898:778-797 | Msa1458880:intergenic | 40.0% |
| GGTCAAATACTGTGCATTTG+AGG | - | tig0039898:783-802 | Msa1458880:intergenic | 40.0% | |
| AGTTACTTACAACCTGTGGT+TGG | - | tig0039898:804-823 | Msa1458880:intergenic | 40.0% | |
| GACAAGTTACTTACAACCTG+TGG | - | tig0039898:808-827 | Msa1458880:intergenic | 40.0% | |
| ! | CAGGTTGTAAGTAACTTGTC+TGG | + | tig0039898:808-827 | Msa1458880:CDS | 40.0% |
| TTGAGTAAAACAGCATCTGC+AGG | - | tig0039898:883-902 | Msa1458880:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | tig0039898:882-901 | Msa1458880:CDS | 40.0% |
| TCAACGACATCGGTAGTTAA+CGG | + | tig0039898:987-1006 | Msa1458880:intron | 40.0% | |
| !! | ACCGATCTTAAAAGTGTCAG+CGG | + | tig0039898:1044-1063 | Msa1458880:intron | 40.0% |
| GCAGAACTGTCACTAATCTA+AGG | + | tig0039898:1066-1085 | Msa1458880:intron | 40.0% | |
| ! | TACAGTGGATTCTGCATGAT+TGG | + | tig0039898:1278-1297 | Msa1458880:intron | 40.0% |
| GAGAAACTCATATTTGACGC+AGG | + | tig0039898:1499-1518 | Msa1458880:CDS | 40.0% | |
| ATCTGCTATGCCTAGTTCCA+CGG | - | tig0039898:224-243 | Msa1458880:intergenic | 45.0% | |
| GCAAACGCAAGAGACGATAA+AGG | - | tig0039898:327-346 | Msa1458880:intergenic | 45.0% | |
| ! | TGAAGCACTCCGCTAACAAA+TGG | - | tig0039898:475-494 | Msa1458880:intergenic | 45.0% |
| ATCCATGTCGTCTGAACATG+TGG | + | tig0039898:494-513 | Msa1458880:CDS | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | tig0039898:512-531 | Msa1458880:CDS | 45.0% |
| GAAATGGCTCACTGAAGACA+AGG | + | tig0039898:528-547 | Msa1458880:CDS | 45.0% | |
| !! | CGCAAGAGGAGAGTCATTTT+GGG | + | tig0039898:570-589 | Msa1458880:CDS | 45.0% |
| GAGTATGTTTCAAGAGGCCA+TGG | + | tig0039898:627-646 | Msa1458880:CDS | 45.0% | |
| CAAACACATGGCTACACTCT+TGG | - | tig0039898:684-703 | Msa1458880:intergenic | 45.0% | |
| GAGTGTAGCCATGTGTTTGA+AGG | + | tig0039898:685-704 | Msa1458880:CDS | 45.0% | |
| ! | GTTTGAAGGTTTGGAGTCTC+TGG | + | tig0039898:699-718 | Msa1458880:CDS | 45.0% |
| ! | TTGGAGTCTCTGGTTGATGT+TGG | + | tig0039898:709-728 | Msa1458880:CDS | 45.0% |
| TGAGGTCAGGAAAAGCTTCA+TGG | - | tig0039898:765-784 | Msa1458880:intergenic | 45.0% | |
| CACAGTATTTGACCAACCAC+AGG | + | tig0039898:789-808 | Msa1458880:CDS | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | tig0039898:880-899 | Msa1458880:intergenic | 45.0% | |
| !!! | GCCGCTGACACTTTTAAGAT+CGG | - | tig0039898:1048-1067 | Msa1458880:intergenic | 45.0% |
| ATCTGCTATGCCTAGTTCCA+CGG | - | tig0039898:224-243 | Msa1458880:intergenic | 45.0% | |
| GCAAACGCAAGAGACGATAA+AGG | - | tig0039898:327-346 | Msa1458880:intergenic | 45.0% | |
| ! | TGAAGCACTCCGCTAACAAA+TGG | - | tig0039898:475-494 | Msa1458880:intergenic | 45.0% |
| ATCCATGTCGTCTGAACATG+TGG | + | tig0039898:494-513 | Msa1458880:CDS | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | tig0039898:512-531 | Msa1458880:CDS | 45.0% |
| GAAATGGCTCACTGAAGACA+AGG | + | tig0039898:528-547 | Msa1458880:CDS | 45.0% | |
| !! | CGCAAGAGGAGAGTCATTTT+GGG | + | tig0039898:570-589 | Msa1458880:CDS | 45.0% |
| GAGTATGTTTCAAGAGGCCA+TGG | + | tig0039898:627-646 | Msa1458880:CDS | 45.0% | |
| CAAACACATGGCTACACTCT+TGG | - | tig0039898:684-703 | Msa1458880:intergenic | 45.0% | |
| GAGTGTAGCCATGTGTTTGA+AGG | + | tig0039898:685-704 | Msa1458880:CDS | 45.0% | |
| ! | GTTTGAAGGTTTGGAGTCTC+TGG | + | tig0039898:699-718 | Msa1458880:CDS | 45.0% |
| ! | TTGGAGTCTCTGGTTGATGT+TGG | + | tig0039898:709-728 | Msa1458880:CDS | 45.0% |
| TGAGGTCAGGAAAAGCTTCA+TGG | - | tig0039898:765-784 | Msa1458880:intergenic | 45.0% | |
| CACAGTATTTGACCAACCAC+AGG | + | tig0039898:789-808 | Msa1458880:CDS | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | tig0039898:880-899 | Msa1458880:intergenic | 45.0% | |
| !!! | GCCGCTGACACTTTTAAGAT+CGG | - | tig0039898:1048-1067 | Msa1458880:intergenic | 45.0% |
| CTCAAATCAGCCGTGGAACT+AGG | + | tig0039898:211-230 | Msa1458880:CDS | 50.0% | |
| GCAGATGCAATCCACAACCA+TGG | + | tig0039898:238-257 | Msa1458880:CDS | 50.0% | |
| GGACACTAACTTTCGAAGGG+TGG | - | tig0039898:306-325 | Msa1458880:intergenic | 50.0% | |
| TGCCACATGTTCAGACGACA+TGG | - | tig0039898:499-518 | Msa1458880:intergenic | 50.0% | |
| ! | GCGCAAGAGGAGAGTCATTT+TGG | + | tig0039898:569-588 | Msa1458880:CDS | 50.0% |
| GATCTGAGAATCAGCAGCCA+TGG | - | tig0039898:647-666 | Msa1458880:intergenic | 50.0% | |
| ! | GAGTCTCTGGTTGATGTTGG+AGG | + | tig0039898:712-731 | Msa1458880:CDS | 50.0% |
| ! | TCTCTGGTTGATGTTGGAGG+TGG | + | tig0039898:715-734 | Msa1458880:CDS | 50.0% |
| ! | CTCTGGTTGATGTTGGAGGT+GGG | + | tig0039898:716-735 | Msa1458880:CDS | 50.0% |
| CTCAAATCAGCCGTGGAACT+AGG | + | tig0039898:211-230 | Msa1458880:CDS | 50.0% | |
| GCAGATGCAATCCACAACCA+TGG | + | tig0039898:238-257 | Msa1458880:CDS | 50.0% | |
| GGACACTAACTTTCGAAGGG+TGG | - | tig0039898:306-325 | Msa1458880:intergenic | 50.0% | |
| TGCCACATGTTCAGACGACA+TGG | - | tig0039898:499-518 | Msa1458880:intergenic | 50.0% | |
| ! | GCGCAAGAGGAGAGTCATTT+TGG | + | tig0039898:569-588 | Msa1458880:CDS | 50.0% |
| GATCTGAGAATCAGCAGCCA+TGG | - | tig0039898:647-666 | Msa1458880:intergenic | 50.0% | |
| ! | GAGTCTCTGGTTGATGTTGG+AGG | + | tig0039898:712-731 | Msa1458880:CDS | 50.0% |
| ! | TCTCTGGTTGATGTTGGAGG+TGG | + | tig0039898:715-734 | Msa1458880:CDS | 50.0% |
| ! | CTCTGGTTGATGTTGGAGGT+GGG | + | tig0039898:716-735 | Msa1458880:CDS | 50.0% |
| !! | CACGGCTGATTTGAGTGCCA+TGG | - | tig0039898:206-225 | Msa1458880:intergenic | 55.0% |
| CATGGCACTCAAATCAGCCG+TGG | + | tig0039898:204-223 | Msa1458880:CDS | 55.0% | |
| ! | AGCCTCTTTGAGAGCGCAAG+AGG | + | tig0039898:556-575 | Msa1458880:CDS | 55.0% |
| CTCCTCTTGCGCTCTCAAAG+AGG | - | tig0039898:561-580 | Msa1458880:intergenic | 55.0% | |
| GGCTACACTCTTGGAGTGCA+AGG | - | tig0039898:675-694 | Msa1458880:intergenic | 55.0% | |
| GTTGATGTTGGAGGTGGGAG+AGG | + | tig0039898:721-740 | Msa1458880:CDS | 55.0% | |
| !! | CACGGCTGATTTGAGTGCCA+TGG | - | tig0039898:206-225 | Msa1458880:intergenic | 55.0% |
| CATGGCACTCAAATCAGCCG+TGG | + | tig0039898:204-223 | Msa1458880:CDS | 55.0% | |
| ! | AGCCTCTTTGAGAGCGCAAG+AGG | + | tig0039898:556-575 | Msa1458880:CDS | 55.0% |
| CTCCTCTTGCGCTCTCAAAG+AGG | - | tig0039898:561-580 | Msa1458880:intergenic | 55.0% | |
| GGCTACACTCTTGGAGTGCA+AGG | - | tig0039898:675-694 | Msa1458880:intergenic | 55.0% | |
| GTTGATGTTGGAGGTGGGAG+AGG | + | tig0039898:721-740 | Msa1458880:CDS | 55.0% | |
| GATGTTGGAGGTGGGAGAGG+AGG | + | tig0039898:724-743 | Msa1458880:CDS | 60.0% | |
| GATGTTGGAGGTGGGAGAGG+AGG | + | tig0039898:724-743 | Msa1458880:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0039898 | gene | 115 | 1585 | 115 | ID=Msa1458880;Name=Msa1458880 |
| tig0039898 | mRNA | 115 | 1585 | 115 | ID=Msa1458880-mRNA-1;Parent=Msa1458880;Name=Msa1458880-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|363 |
| tig0039898 | exon | 115 | 903 | 115 | ID=Msa1458880-mRNA-1:exon:21992;Parent=Msa1458880-mRNA-1 |
| tig0039898 | exon | 1283 | 1585 | 1283 | ID=Msa1458880-mRNA-1:exon:21993;Parent=Msa1458880-mRNA-1 |
| tig0039898 | CDS | 115 | 903 | 115 | ID=Msa1458880-mRNA-1:cds;Parent=Msa1458880-mRNA-1 |
| tig0039898 | CDS | 1283 | 1585 | 1283 | ID=Msa1458880-mRNA-1:cds;Parent=Msa1458880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
