Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539600 | XP_013455259.2 | 94.766 | 363 | 19 | 0 | 1 | 363 | 1 | 363 | 0.0 | 691 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539600 | sp|O24305|M3OM1_PEA | 74.931 | 363 | 88 | 2 | 1 | 363 | 1 | 360 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539600 | Q06YR0 | 94.766 | 363 | 19 | 0 | 1 | 363 | 1 | 363 | 0.0 | 691 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0539600 | Msa0539630 | 0.817071 | 3.988067e-52 | -8.615850e-47 |
| Msa0539600 | Msa1068940 | 0.805976 | 1.029335e-49 | -8.615850e-47 |
| Msa0539600 | Msa1156710 | 0.805404 | 1.357037e-49 | -8.615850e-47 |
| Msa0539600 | Msa1458880 | 0.809441 | 1.889404e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539600 | MtrunA17_Chr4g0014681 | 94.766 | 363 | 19 | 0 | 1 | 363 | 1 | 363 | 0.0 | 691 |
| Msa0539600 | MtrunA17_Chr4g0014561 | 94.490 | 363 | 20 | 0 | 1 | 363 | 1 | 363 | 0.0 | 687 |
| Msa0539600 | MtrunA17_Chr4g0014641 | 90.634 | 363 | 34 | 0 | 1 | 363 | 1 | 363 | 0.0 | 666 |
| Msa0539600 | MtrunA17_Chr4g0046361 | 72.727 | 363 | 97 | 1 | 1 | 363 | 1 | 361 | 0.0 | 558 |
| Msa0539600 | MtrunA17_Chr4g0014661 | 76.309 | 363 | 80 | 1 | 1 | 363 | 1 | 357 | 0.0 | 541 |
| Msa0539600 | MtrunA17_Chr4g0046341 | 74.451 | 364 | 92 | 1 | 1 | 363 | 1 | 364 | 0.0 | 538 |
| Msa0539600 | MtrunA17_Chr4g0014591 | 76.033 | 363 | 81 | 1 | 1 | 363 | 1 | 357 | 0.0 | 518 |
| Msa0539600 | MtrunA17_Chr4g0014601 | 74.436 | 266 | 62 | 1 | 1 | 266 | 1 | 260 | 1.78e-147 | 417 |
| Msa0539600 | MtrunA17_Chr5g0432301 | 51.130 | 354 | 165 | 5 | 11 | 362 | 12 | 359 | 5.08e-124 | 361 |
| Msa0539600 | MtrunA17_Chr5g0432251 | 49.859 | 355 | 170 | 5 | 11 | 363 | 11 | 359 | 1.98e-123 | 360 |
| Msa0539600 | MtrunA17_Chr5g0432241 | 49.859 | 355 | 170 | 5 | 11 | 363 | 12 | 360 | 5.41e-121 | 353 |
| Msa0539600 | MtrunA17_Chr7g0219141 | 47.486 | 358 | 182 | 4 | 6 | 363 | 6 | 357 | 3.62e-119 | 348 |
| Msa0539600 | MtrunA17_Chr7g0219161 | 49.280 | 347 | 168 | 6 | 6 | 351 | 6 | 345 | 1.99e-116 | 342 |
| Msa0539600 | MtrunA17_Chr1g0188391 | 48.753 | 361 | 177 | 6 | 6 | 363 | 6 | 361 | 2.17e-116 | 342 |
| Msa0539600 | MtrunA17_Chr7g0223231 | 46.629 | 356 | 178 | 4 | 6 | 361 | 5 | 348 | 9.97e-115 | 337 |
| Msa0539600 | MtrunA17_Chr4g0046531 | 51.558 | 353 | 162 | 4 | 11 | 362 | 11 | 355 | 1.38e-113 | 346 |
| Msa0539600 | MtrunA17_Chr4g0046531 | 50.282 | 354 | 167 | 4 | 11 | 363 | 373 | 718 | 6.12e-111 | 339 |
| Msa0539600 | MtrunA17_Chr5g0432261 | 47.875 | 353 | 152 | 3 | 11 | 363 | 7 | 327 | 2.10e-113 | 333 |
| Msa0539600 | MtrunA17_Chr7g0223241 | 47.472 | 356 | 175 | 4 | 6 | 361 | 5 | 348 | 8.79e-112 | 330 |
| Msa0539600 | MtrunA17_Chr4g0040621 | 46.328 | 354 | 181 | 3 | 11 | 363 | 24 | 369 | 3.49e-109 | 323 |
| Msa0539600 | MtrunA17_Chr5g0432211 | 46.197 | 355 | 169 | 6 | 11 | 363 | 11 | 345 | 5.64e-109 | 322 |
| Msa0539600 | MtrunA17_Chr1g0188371 | 46.018 | 339 | 172 | 6 | 9 | 343 | 9 | 340 | 5.33e-95 | 288 |
| Msa0539600 | MtrunA17_Chr3g0121301 | 37.318 | 343 | 200 | 9 | 20 | 359 | 27 | 357 | 2.98e-62 | 203 |
| Msa0539600 | MtrunA17_Chr4g0021981 | 35.616 | 365 | 221 | 8 | 3 | 363 | 14 | 368 | 4.91e-60 | 197 |
| Msa0539600 | MtrunA17_Chr4g0022021 | 35.068 | 365 | 223 | 8 | 3 | 363 | 14 | 368 | 7.51e-58 | 192 |
| Msa0539600 | MtrunA17_Chr7g0219171 | 54.930 | 142 | 63 | 1 | 222 | 363 | 108 | 248 | 2.89e-48 | 163 |
| Msa0539600 | MtrunA17_Chr7g0219171 | 47.009 | 117 | 55 | 1 | 6 | 122 | 6 | 115 | 7.98e-29 | 112 |
| Msa0539600 | MtrunA17_Chr7g0218301 | 32.551 | 341 | 209 | 10 | 32 | 361 | 40 | 370 | 1.07e-45 | 160 |
| Msa0539600 | MtrunA17_Chr7g0218181 | 30.904 | 343 | 209 | 10 | 32 | 362 | 40 | 366 | 7.86e-45 | 157 |
| Msa0539600 | MtrunA17_Chr7g0218271 | 31.965 | 341 | 211 | 11 | 32 | 361 | 40 | 370 | 1.06e-44 | 157 |
| Msa0539600 | MtrunA17_Chr8g0367501 | 32.787 | 366 | 227 | 11 | 6 | 361 | 4 | 360 | 5.58e-44 | 157 |
| Msa0539600 | MtrunA17_Chr1g0163611 | 31.124 | 347 | 223 | 8 | 25 | 362 | 30 | 369 | 9.65e-44 | 155 |
| Msa0539600 | MtrunA17_Chr7g0218131 | 31.065 | 338 | 218 | 9 | 32 | 362 | 40 | 369 | 1.31e-43 | 154 |
| Msa0539600 | MtrunA17_Chr1g0163601 | 31.231 | 333 | 215 | 7 | 25 | 350 | 30 | 355 | 2.11e-43 | 154 |
| Msa0539600 | MtrunA17_Chr7g0218261 | 31.437 | 334 | 216 | 8 | 32 | 361 | 39 | 363 | 4.60e-42 | 150 |
| Msa0539600 | MtrunA17_Chr1g0200491 | 31.077 | 325 | 210 | 7 | 32 | 349 | 40 | 357 | 6.78e-42 | 150 |
| Msa0539600 | MtrunA17_Chr5g0448091 | 33.832 | 334 | 200 | 12 | 31 | 355 | 33 | 354 | 1.88e-41 | 149 |
| Msa0539600 | MtrunA17_Chr8g0367441 | 32.923 | 325 | 205 | 8 | 26 | 344 | 41 | 358 | 7.52e-41 | 147 |
| Msa0539600 | MtrunA17_Chr2g0307521 | 30.746 | 335 | 217 | 9 | 32 | 361 | 34 | 358 | 5.67e-40 | 145 |
| Msa0539600 | MtrunA17_Chr8g0367451 | 32.923 | 325 | 205 | 8 | 26 | 344 | 40 | 357 | 1.03e-39 | 144 |
| Msa0539600 | MtrunA17_Chr7g0218211 | 31.343 | 335 | 216 | 8 | 32 | 361 | 39 | 364 | 1.36e-39 | 144 |
| Msa0539600 | MtrunA17_Chr7g0276401 | 31.751 | 337 | 206 | 9 | 26 | 353 | 42 | 363 | 2.27e-39 | 143 |
| Msa0539600 | MtrunA17_Chr8g0367491 | 31.454 | 337 | 217 | 9 | 26 | 355 | 40 | 369 | 6.39e-39 | 142 |
| Msa0539600 | MtrunA17_Chr7g0276411 | 31.915 | 329 | 211 | 8 | 26 | 348 | 26 | 347 | 8.71e-39 | 141 |
| Msa0539600 | MtrunA17_Chr2g0314271 | 32.047 | 337 | 210 | 9 | 31 | 360 | 27 | 351 | 2.54e-38 | 140 |
| Msa0539600 | MtrunA17_Chr1g0163621 | 29.730 | 333 | 220 | 7 | 25 | 350 | 44 | 369 | 1.43e-37 | 139 |
| Msa0539600 | MtrunA17_Chr3g0085211 | 32.110 | 327 | 210 | 8 | 28 | 350 | 38 | 356 | 3.52e-37 | 137 |
| Msa0539600 | MtrunA17_Chr4g0014611 | 80.000 | 100 | 20 | 0 | 264 | 363 | 8 | 107 | 2.72e-36 | 127 |
| Msa0539600 | MtrunA17_Chr3g0128011 | 31.385 | 325 | 208 | 9 | 31 | 349 | 88 | 403 | 7.04e-36 | 135 |
| Msa0539600 | MtrunA17_Chr3g0130011 | 30.747 | 348 | 219 | 11 | 23 | 362 | 24 | 357 | 2.67e-34 | 129 |
| Msa0539600 | MtrunA17_Chr8g0345851 | 33.725 | 255 | 160 | 5 | 98 | 350 | 30 | 277 | 1.17e-33 | 126 |
| Msa0539600 | MtrunA17_Chr8g0367381 | 31.290 | 310 | 183 | 8 | 26 | 330 | 41 | 325 | 1.51e-33 | 127 |
| Msa0539600 | MtrunA17_Chr3g0085201 | 30.031 | 323 | 214 | 8 | 32 | 350 | 29 | 343 | 7.87e-33 | 125 |
| Msa0539600 | MtrunA17_Chr3g0130061 | 28.696 | 345 | 226 | 10 | 23 | 360 | 24 | 355 | 2.31e-30 | 119 |
| Msa0539600 | MtrunA17_Chr4g0014671 | 77.143 | 105 | 24 | 0 | 259 | 363 | 30 | 134 | 1.56e-28 | 108 |
| Msa0539600 | MtrunA17_Chr4g0014621 | 78.788 | 66 | 14 | 0 | 298 | 363 | 197 | 262 | 3.54e-21 | 91.7 |
| Msa0539600 | MtrunA17_Chr8g0367461 | 42.593 | 108 | 57 | 3 | 250 | 355 | 1 | 105 | 3.45e-19 | 82.0 |
| Msa0539600 | MtrunA17_Chr6g0482291 | 30.233 | 172 | 108 | 3 | 178 | 348 | 1 | 161 | 8.88e-18 | 80.1 |
| Msa0539600 | MtrunA17_Chr4g0014551 | 100.000 | 44 | 0 | 0 | 320 | 363 | 1 | 44 | 6.41e-16 | 71.2 |
| Msa0539600 | MtrunA17_Chr8g0367401 | 34.234 | 111 | 71 | 1 | 153 | 263 | 2 | 110 | 5.32e-14 | 68.6 |
| Msa0539600 | MtrunA17_Chr4g0011691 | 35.659 | 129 | 72 | 4 | 6 | 134 | 16 | 133 | 1.11e-13 | 70.1 |
| Msa0539600 | MtrunA17_Chr4g0011691 | 42.708 | 96 | 51 | 3 | 265 | 359 | 140 | 232 | 1.35e-13 | 69.7 |
| Msa0539600 | MtrunA17_Chr8g0367391 | 34.746 | 118 | 70 | 4 | 234 | 348 | 6 | 119 | 7.38e-12 | 62.4 |
| Msa0539600 | MtrunA17_Chr1g0170941 | 43.939 | 66 | 37 | 0 | 196 | 261 | 11 | 76 | 2.91e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0539600 | AT4G35160.1 | 33.151 | 365 | 213 | 12 | 16 | 362 | 29 | 380 | 8.68e-48 | 166 |
| Msa0539600 | AT4G35150.1 | 30.168 | 358 | 190 | 10 | 16 | 362 | 15 | 323 | 3.06e-46 | 160 |
| Msa0539600 | AT5G54160.1 | 32.523 | 329 | 199 | 8 | 31 | 350 | 34 | 348 | 5.79e-41 | 147 |
| Msa0539600 | AT1G77520.1 | 31.977 | 344 | 215 | 9 | 31 | 362 | 44 | 380 | 7.83e-41 | 148 |
| Msa0539600 | AT3G53140.1 | 33.430 | 344 | 201 | 13 | 31 | 360 | 27 | 356 | 4.30e-39 | 142 |
| Msa0539600 | AT1G51990.2 | 31.287 | 342 | 213 | 11 | 33 | 363 | 32 | 362 | 2.41e-38 | 140 |
| Msa0539600 | AT1G51990.1 | 31.594 | 345 | 208 | 12 | 33 | 363 | 32 | 362 | 2.38e-37 | 138 |
| Msa0539600 | AT1G33030.1 | 29.819 | 332 | 214 | 10 | 31 | 353 | 21 | 342 | 5.06e-36 | 134 |
| Msa0539600 | AT5G53810.1 | 30.259 | 347 | 222 | 9 | 29 | 362 | 38 | 377 | 7.88e-35 | 132 |
| Msa0539600 | AT1G77530.1 | 33.140 | 344 | 211 | 9 | 31 | 362 | 44 | 380 | 1.21e-34 | 131 |
| Msa0539600 | AT1G63140.2 | 28.919 | 370 | 239 | 11 | 9 | 362 | 19 | 380 | 1.15e-32 | 126 |
| Msa0539600 | AT1G63140.4 | 28.919 | 370 | 239 | 11 | 9 | 362 | 39 | 400 | 1.68e-32 | 125 |
| Msa0539600 | AT1G76790.1 | 28.571 | 371 | 215 | 16 | 7 | 355 | 9 | 351 | 4.77e-27 | 110 |
| Msa0539600 | AT1G21130.1 | 27.811 | 338 | 209 | 13 | 31 | 350 | 40 | 360 | 8.29e-25 | 104 |
| Msa0539600 | AT1G21100.1 | 27.679 | 336 | 212 | 12 | 31 | 350 | 40 | 360 | 3.20e-24 | 102 |
| Msa0539600 | AT1G21110.1 | 26.888 | 331 | 211 | 12 | 31 | 345 | 40 | 355 | 1.17e-23 | 100 |
| Msa0539600 | AT1G62900.1 | 33.333 | 192 | 123 | 3 | 173 | 362 | 16 | 204 | 1.30e-23 | 97.4 |
| Msa0539600 | AT1G21120.1 | 26.488 | 336 | 216 | 12 | 31 | 350 | 40 | 360 | 1.64e-22 | 97.8 |
| Msa0539600 | AT1G21120.2 | 26.488 | 336 | 216 | 12 | 31 | 350 | 88 | 408 | 2.70e-22 | 97.8 |
| Msa0539600 | AT5G37170.2 | 30.928 | 194 | 128 | 4 | 172 | 362 | 43 | 233 | 1.89e-21 | 92.4 |
| Msa0539600 | AT5G37170.1 | 30.928 | 194 | 128 | 4 | 172 | 362 | 143 | 333 | 3.06e-21 | 93.6 |
| Msa0539600 | AT5G37170.3 | 33.526 | 173 | 106 | 5 | 194 | 360 | 14 | 183 | 4.72e-20 | 87.0 |
| Msa0539600 | AT1G33030.2 | 26.778 | 239 | 162 | 7 | 31 | 263 | 21 | 252 | 4.73e-15 | 74.7 |
| Msa0539600 | AT1G33030.3 | 26.778 | 239 | 162 | 7 | 31 | 263 | 21 | 252 | 8.26e-15 | 74.3 |
| Msa0539600 | AT1G63140.1 | 26.394 | 269 | 179 | 8 | 9 | 263 | 39 | 302 | 1.32e-14 | 73.9 |
Find 66 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCAATTCTCCAATATCTTTA+AGG | 0.080504 | 4_1:-20694214 | None:intergenic |
| GCGCAAGAGGAGAGTCATTT+TGG | 0.126492 | 4_1:+20693469 | Msa0539600:CDS |
| ATGATGATGACTTTGTTAAA+TGG | 0.247172 | 4_1:+20694351 | Msa0539600:CDS |
| TGAATTATCCTTAAAGATAT+TGG | 0.263747 | 4_1:+20694206 | Msa0539600:CDS |
| TAAAACAAATGAGTTGAAAT+TGG | 0.270517 | 4_1:+20694317 | Msa0539600:CDS |
| TGTATATATGTTTGTATAGA+TGG | 0.289789 | 4_1:-20693068 | None:intergenic |
| CTCAGTGAGCCATTTCTTAG+AGG | 0.316815 | 4_1:-20693421 | None:intergenic |
| TACAGTGGATTCTGCATGAT+TGG | 0.329305 | 4_1:+20694178 | Msa0539600:intron |
| TAAAGGACACTAACTTTAGA+AGG | 0.352110 | 4_1:-20693207 | None:intergenic |
| CTTAACAAAGATTCTGAATC+TGG | 0.352374 | 4_1:+20693498 | Msa0539600:CDS |
| TAGCCATGTGTTTGAAGGTT+TGG | 0.381600 | 4_1:+20693590 | Msa0539600:CDS |
| AAGAAAGAGAGAAGAAAGAA+TGG | 0.382447 | 4_1:+20694376 | Msa0539600:CDS |
| GATGAAAATTTGAAATTTGT+TGG | 0.393974 | 4_1:+20693732 | Msa0539600:CDS |
| GTTTGAAGGTTTGGAGTCTC+TGG | 0.426025 | 4_1:+20693599 | Msa0539600:CDS |
| TGAGGTCAGGAAAAGCTTCA+TGG | 0.428682 | 4_1:-20693662 | None:intergenic |
| CAAACACATGGCTACACTCT+TGG | 0.432380 | 4_1:-20693581 | None:intergenic |
| GAGTGTAGCCATGTGTTTGA+AGG | 0.433859 | 4_1:+20693585 | Msa0539600:CDS |
| GCTAATTCAGTAAGAGTCAA+TGG | 0.462336 | 4_1:-20693165 | None:intergenic |
| GTTGATGTTGGAAGTGGGAG+AGG | 0.463450 | 4_1:+20693621 | Msa0539600:CDS |
| AATACTGTGCATTTGAGGTC+AGG | 0.467274 | 4_1:-20693675 | None:intergenic |
| TGTGGCACTCCTCTAAGAAA+TGG | 0.479752 | 4_1:+20693412 | Msa0539600:CDS |
| CTCAAATCAGCCGTGGAACT+AGG | 0.484791 | 4_1:+20693111 | Msa0539600:CDS |
| GGTCAAATACTGTGCATTTG+AGG | 0.486795 | 4_1:-20693680 | None:intergenic |
| CCACTGATAAGAAGCATTGA+AGG | 0.488410 | 4_1:-20693330 | None:intergenic |
| AGAAAGAGAGAAGAAAGAAT+GGG | 0.494469 | 4_1:+20694377 | Msa0539600:CDS |
| CAGGTTGTAAGTAACTTGTC+TGG | 0.502887 | 4_1:+20693708 | Msa0539600:CDS |
| GCAGGCGCAAGAGACGATAA+AGG | 0.510231 | 4_1:-20693224 | None:intergenic |
| AGTCTCTTTGAGAGCGCAAG+AGG | 0.511386 | 4_1:+20693456 | Msa0539600:CDS |
| TGAAGCACTCCGCTAACAAA+TGG | 0.512286 | 4_1:-20693372 | None:intergenic |
| ACACTGATGAATGGCAAAGA+AGG | 0.516027 | 4_1:+20693276 | Msa0539600:CDS |
| TCTCTGGTTGATGTTGGAAG+TGG | 0.517153 | 4_1:+20693615 | Msa0539600:CDS |
| CACGGCTGATTTGAGTGCCA+TGG | 0.517659 | 4_1:-20693103 | None:intergenic |
| AGAAACCATTGTGTGTTAGC+AGG | 0.521211 | 4_1:-20693242 | None:intergenic |
| ATCTGCTATGCCTAGTTCCA+CGG | 0.523313 | 4_1:-20693121 | None:intergenic |
| ATAGACTTGAAGCCACATAT+AGG | 0.526187 | 4_1:-20694444 | None:intergenic |
| GAAAATTTGAAATTTGTTGG+TGG | 0.531638 | 4_1:+20693735 | Msa0539600:CDS |
| TTGGAGTCTCTGGTTGATGT+TGG | 0.534989 | 4_1:+20693609 | Msa0539600:CDS |
| TGTTTGTCACCATTTGTTAG+CGG | 0.537198 | 4_1:+20693363 | Msa0539600:CDS |
| GGCTACACTCTTGGAGTGCA+AGG | 0.538863 | 4_1:-20693572 | None:intergenic |
| GAGTATGTTTCAAGAGGCCA+TGG | 0.546582 | 4_1:+20693527 | Msa0539600:CDS |
| GATGTTGGAAGTGGGAGAGG+AGG | 0.547604 | 4_1:+20693624 | Msa0539600:CDS |
| ATACAGCTTTATAAATTCCA+TGG | 0.553200 | 4_1:+20693086 | Msa0539600:CDS |
| ATCCATGTCGTCTGAACATG+TGG | 0.556197 | 4_1:+20693394 | Msa0539600:CDS |
| TACAAGATTACACCTATATG+TGG | 0.556787 | 4_1:+20694432 | Msa0539600:CDS |
| TTGAGTAAAACAGCATCTGC+AGG | 0.557051 | 4_1:-20693780 | None:intergenic |
| GACAAGTTACTTACAACCTG+TGG | 0.570330 | 4_1:-20693705 | None:intergenic |
| CACAGTATTTGACCAACCAC+AGG | 0.579462 | 4_1:+20693689 | Msa0539600:CDS |
| CCTTCAATGCTTCTTATCAG+TGG | 0.583998 | 4_1:+20693330 | Msa0539600:CDS |
| GATCTGAGAATCAGCAGCCA+TGG | 0.587279 | 4_1:-20693544 | None:intergenic |
| CAAATGGATTTCAAGTGCAA+TGG | 0.588515 | 4_1:+20693012 | None:intergenic |
| TGCCACATGTTCAGACGACA+TGG | 0.594397 | 4_1:-20693396 | None:intergenic |
| CTCTGGTTGATGTTGGAAGT+GGG | 0.597859 | 4_1:+20693616 | Msa0539600:CDS |
| TGAATTGAGTATGTTTCAAG+AGG | 0.600938 | 4_1:+20693521 | Msa0539600:CDS |
| GGACACTAACTTTAGAAGGG+TGG | 0.612811 | 4_1:-20693203 | None:intergenic |
| TTGCGCCTGCTAACACACAA+TGG | 0.617100 | 4_1:+20693237 | Msa0539600:CDS |
| GAAATGGCTCACTGAGGACA+AGG | 0.624424 | 4_1:+20693428 | Msa0539600:CDS |
| AGGGTGGAGTTTCAAAGATG+AGG | 0.627418 | 4_1:-20693187 | None:intergenic |
| AGTTACTTACAACCTGTGGT+TGG | 0.628024 | 4_1:-20693701 | None:intergenic |
| AAAGGACACTAACTTTAGAA+GGG | 0.634971 | 4_1:-20693206 | None:intergenic |
| GAGAAACTCATATTTGACGC+AGG | 0.638948 | 4_1:+20694399 | Msa0539600:CDS |
| CATGGCACTCAAATCAGCCG+TGG | 0.640463 | 4_1:+20693104 | Msa0539600:CDS |
| GCAGATGCAATCCACAACCA+TGG | 0.642290 | 4_1:+20693138 | Msa0539600:CDS |
| AGTAAAACAGCATCTGCAGG+AGG | 0.673163 | 4_1:-20693777 | None:intergenic |
| ACTCCAAACCTTCAAACACA+TGG | 0.677292 | 4_1:-20693593 | None:intergenic |
| CTGATAAGAAGCATTGAAGG+AGG | 0.689900 | 4_1:-20693327 | None:intergenic |
| CTCTAAGAAATGGCTCACTG+AGG | 0.732533 | 4_1:+20693422 | Msa0539600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTAAAAGATATATTTTTTT+TGG | + | chr4_1:20693825-20693844 | Msa0539600:intron | 10.0% |
| !!! | AGTAAAAGATATATTTTTTT+TGG | + | chr4_1:20693825-20693844 | Msa0539600:intron | 10.0% |
| !!! | TAAAATCATTTTTTTTACAG+TGG | + | chr4_1:20694163-20694182 | Msa0539600:intron | 15.0% |
| !!! | TAAAATCATTTTTTTTACAG+TGG | + | chr4_1:20694163-20694182 | Msa0539600:intron | 15.0% |
| !! | TGTATATATGTTTGTATAGA+TGG | - | chr4_1:20693071-20693090 | None:intergenic | 20.0% |
| !!! | GATGAAAATTTGAAATTTGT+TGG | + | chr4_1:20693732-20693751 | Msa0539600:CDS | 20.0% |
| !!! | TATCTTTTACTCATAACATT+TGG | - | chr4_1:20693816-20693835 | None:intergenic | 20.0% |
| !!! | GAGTAATTTTCTTATGTTAT+TGG | + | chr4_1:20694014-20694033 | Msa0539600:intron | 20.0% |
| !! | TAATTAGTCATCAACAAAAT+TGG | - | chr4_1:20694054-20694073 | None:intergenic | 20.0% |
| !! | TGAATTATCCTTAAAGATAT+TGG | + | chr4_1:20694206-20694225 | Msa0539600:CDS | 20.0% |
| !!! | TAAAACAAATGAGTTGAAAT+TGG | + | chr4_1:20694317-20694336 | Msa0539600:CDS | 20.0% |
| !! | TGTATATATGTTTGTATAGA+TGG | - | chr4_1:20693071-20693090 | None:intergenic | 20.0% |
| !!! | GATGAAAATTTGAAATTTGT+TGG | + | chr4_1:20693732-20693751 | Msa0539600:CDS | 20.0% |
| !!! | TATCTTTTACTCATAACATT+TGG | - | chr4_1:20693816-20693835 | None:intergenic | 20.0% |
| !!! | GAGTAATTTTCTTATGTTAT+TGG | + | chr4_1:20694014-20694033 | Msa0539600:intron | 20.0% |
| !! | TAATTAGTCATCAACAAAAT+TGG | - | chr4_1:20694054-20694073 | None:intergenic | 20.0% |
| !! | TGAATTATCCTTAAAGATAT+TGG | + | chr4_1:20694206-20694225 | Msa0539600:CDS | 20.0% |
| !!! | TAAAACAAATGAGTTGAAAT+TGG | + | chr4_1:20694317-20694336 | Msa0539600:CDS | 20.0% |
| !! | ATACAGCTTTATAAATTCCA+TGG | + | chr4_1:20693086-20693105 | Msa0539600:CDS | 25.0% |
| !!! | GAAAATTTGAAATTTGTTGG+TGG | + | chr4_1:20693735-20693754 | Msa0539600:CDS | 25.0% |
| ! | GTCGTTGATATAAAAGAATA+TGG | - | chr4_1:20693875-20693894 | None:intergenic | 25.0% |
| !! | TTCTTTTATATCAACGACAT+CGG | + | chr4_1:20693877-20693896 | Msa0539600:intron | 25.0% |
| !!! | TTAAATGTTAAAAGTGTCAG+CGG | - | chr4_1:20693913-20693932 | None:intergenic | 25.0% |
| !!! | TGTTGATGACTAATTAATCT+TGG | + | chr4_1:20694058-20694077 | Msa0539600:intron | 25.0% |
| !! | AATTGCAAAAAAGCTATTTC+AGG | + | chr4_1:20694231-20694250 | Msa0539600:CDS | 25.0% |
| !! | AAAAAAGCTATTTCAGGAAA+AGG | + | chr4_1:20694237-20694256 | Msa0539600:CDS | 25.0% |
| !! | AAAAAGCTATTTCAGGAAAA+GGG | + | chr4_1:20694238-20694257 | Msa0539600:CDS | 25.0% |
| !! | ATGATGATGACTTTGTTAAA+TGG | + | chr4_1:20694351-20694370 | Msa0539600:CDS | 25.0% |
| !! | ATACAGCTTTATAAATTCCA+TGG | + | chr4_1:20693086-20693105 | Msa0539600:CDS | 25.0% |
| !!! | GAAAATTTGAAATTTGTTGG+TGG | + | chr4_1:20693735-20693754 | Msa0539600:CDS | 25.0% |
| ! | GTCGTTGATATAAAAGAATA+TGG | - | chr4_1:20693875-20693894 | None:intergenic | 25.0% |
| !! | TTCTTTTATATCAACGACAT+CGG | + | chr4_1:20693877-20693896 | Msa0539600:intron | 25.0% |
| !!! | TTAAATGTTAAAAGTGTCAG+CGG | - | chr4_1:20693913-20693932 | None:intergenic | 25.0% |
| !!! | TGTTGATGACTAATTAATCT+TGG | + | chr4_1:20694058-20694077 | Msa0539600:intron | 25.0% |
| !! | AATTGCAAAAAAGCTATTTC+AGG | + | chr4_1:20694231-20694250 | Msa0539600:CDS | 25.0% |
| !! | AAAAAAGCTATTTCAGGAAA+AGG | + | chr4_1:20694237-20694256 | Msa0539600:CDS | 25.0% |
| !! | AAAAAGCTATTTCAGGAAAA+GGG | + | chr4_1:20694238-20694257 | Msa0539600:CDS | 25.0% |
| !! | ATGATGATGACTTTGTTAAA+TGG | + | chr4_1:20694351-20694370 | Msa0539600:CDS | 25.0% |
| ! | AAAGGACACTAACTTTAGAA+GGG | - | chr4_1:20693209-20693228 | None:intergenic | 30.0% |
| TAAAGGACACTAACTTTAGA+AGG | - | chr4_1:20693210-20693229 | None:intergenic | 30.0% | |
| CTTAACAAAGATTCTGAATC+TGG | + | chr4_1:20693498-20693517 | Msa0539600:CDS | 30.0% | |
| TGAATTGAGTATGTTTCAAG+AGG | + | chr4_1:20693521-20693540 | Msa0539600:CDS | 30.0% | |
| TTAGAAATTTCGTAACTGAG+AGG | + | chr4_1:20693992-20694011 | Msa0539600:intron | 30.0% | |
| GCAATTCTCCAATATCTTTA+AGG | - | chr4_1:20694217-20694236 | None:intergenic | 30.0% | |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr4_1:20694246-20694265 | Msa0539600:CDS | 30.0% | |
| AAGAAAGAGAGAAGAAAGAA+TGG | + | chr4_1:20694376-20694395 | Msa0539600:CDS | 30.0% | |
| AGAAAGAGAGAAGAAAGAAT+GGG | + | chr4_1:20694377-20694396 | Msa0539600:CDS | 30.0% | |
| TACAAGATTACACCTATATG+TGG | + | chr4_1:20694432-20694451 | Msa0539600:CDS | 30.0% | |
| ! | AAAGGACACTAACTTTAGAA+GGG | - | chr4_1:20693209-20693228 | None:intergenic | 30.0% |
| TAAAGGACACTAACTTTAGA+AGG | - | chr4_1:20693210-20693229 | None:intergenic | 30.0% | |
| CTTAACAAAGATTCTGAATC+TGG | + | chr4_1:20693498-20693517 | Msa0539600:CDS | 30.0% | |
| TGAATTGAGTATGTTTCAAG+AGG | + | chr4_1:20693521-20693540 | Msa0539600:CDS | 30.0% | |
| TTAGAAATTTCGTAACTGAG+AGG | + | chr4_1:20693992-20694011 | Msa0539600:intron | 30.0% | |
| GCAATTCTCCAATATCTTTA+AGG | - | chr4_1:20694217-20694236 | None:intergenic | 30.0% | |
| ATTTCAGGAAAAGGGAAAAA+AGG | + | chr4_1:20694246-20694265 | Msa0539600:CDS | 30.0% | |
| AAGAAAGAGAGAAGAAAGAA+TGG | + | chr4_1:20694376-20694395 | Msa0539600:CDS | 30.0% | |
| AGAAAGAGAGAAGAAAGAAT+GGG | + | chr4_1:20694377-20694396 | Msa0539600:CDS | 30.0% | |
| TACAAGATTACACCTATATG+TGG | + | chr4_1:20694432-20694451 | Msa0539600:CDS | 30.0% | |
| ! | TAAGAGTCAATGGTTTTCCA+TGG | - | chr4_1:20693158-20693177 | None:intergenic | 35.0% |
| GCTAATTCAGTAAGAGTCAA+TGG | - | chr4_1:20693168-20693187 | None:intergenic | 35.0% | |
| GCAAAAACAACACTGATGAA+TGG | + | chr4_1:20693267-20693286 | Msa0539600:CDS | 35.0% | |
| ! | TGTTTGTCACCATTTGTTAG+CGG | + | chr4_1:20693363-20693382 | Msa0539600:CDS | 35.0% |
| CAGAACTGTCACTAATCTAA+GGG | + | chr4_1:20693967-20693986 | Msa0539600:intron | 35.0% | |
| AGGAAAAGGGAAAAAAGGAA+AGG | + | chr4_1:20694251-20694270 | Msa0539600:CDS | 35.0% | |
| ATAGACTTGAAGCCACATAT+AGG | - | chr4_1:20694447-20694466 | None:intergenic | 35.0% | |
| ! | TAAGAGTCAATGGTTTTCCA+TGG | - | chr4_1:20693158-20693177 | None:intergenic | 35.0% |
| GCTAATTCAGTAAGAGTCAA+TGG | - | chr4_1:20693168-20693187 | None:intergenic | 35.0% | |
| GCAAAAACAACACTGATGAA+TGG | + | chr4_1:20693267-20693286 | Msa0539600:CDS | 35.0% | |
| ! | TGTTTGTCACCATTTGTTAG+CGG | + | chr4_1:20693363-20693382 | Msa0539600:CDS | 35.0% |
| CAGAACTGTCACTAATCTAA+GGG | + | chr4_1:20693967-20693986 | Msa0539600:intron | 35.0% | |
| AGGAAAAGGGAAAAAAGGAA+AGG | + | chr4_1:20694251-20694270 | Msa0539600:CDS | 35.0% | |
| ATAGACTTGAAGCCACATAT+AGG | - | chr4_1:20694447-20694466 | None:intergenic | 35.0% | |
| ! | TCAATGGTTTTCCATGGTTG+TGG | - | chr4_1:20693152-20693171 | None:intergenic | 40.0% |
| AGAAACCATTGTGTGTTAGC+AGG | - | chr4_1:20693245-20693264 | None:intergenic | 40.0% | |
| ACACTGATGAATGGCAAAGA+AGG | + | chr4_1:20693276-20693295 | Msa0539600:CDS | 40.0% | |
| !! | CTGATAAGAAGCATTGAAGG+AGG | - | chr4_1:20693330-20693349 | None:intergenic | 40.0% |
| !! | CCACTGATAAGAAGCATTGA+AGG | - | chr4_1:20693333-20693352 | None:intergenic | 40.0% |
| CCTTCAATGCTTCTTATCAG+TGG | + | chr4_1:20693330-20693349 | Msa0539600:CDS | 40.0% | |
| TAGCCATGTGTTTGAAGGTT+TGG | + | chr4_1:20693590-20693609 | Msa0539600:CDS | 40.0% | |
| ACTCCAAACCTTCAAACACA+TGG | - | chr4_1:20693596-20693615 | None:intergenic | 40.0% | |
| ! | AATACTGTGCATTTGAGGTC+AGG | - | chr4_1:20693678-20693697 | None:intergenic | 40.0% |
| GGTCAAATACTGTGCATTTG+AGG | - | chr4_1:20693683-20693702 | None:intergenic | 40.0% | |
| AGTTACTTACAACCTGTGGT+TGG | - | chr4_1:20693704-20693723 | None:intergenic | 40.0% | |
| GACAAGTTACTTACAACCTG+TGG | - | chr4_1:20693708-20693727 | None:intergenic | 40.0% | |
| ! | CAGGTTGTAAGTAACTTGTC+TGG | + | chr4_1:20693708-20693727 | Msa0539600:CDS | 40.0% |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr4_1:20693783-20693802 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr4_1:20693782-20693801 | Msa0539600:CDS | 40.0% |
| TCAACGACATCGGTAGTTAA+CGG | + | chr4_1:20693887-20693906 | Msa0539600:intron | 40.0% | |
| !! | ACCGATCTTAAAAGTGTCAG+CGG | + | chr4_1:20693944-20693963 | Msa0539600:intron | 40.0% |
| GCAGAACTGTCACTAATCTA+AGG | + | chr4_1:20693966-20693985 | Msa0539600:intron | 40.0% | |
| ! | TACAGTGGATTCTGCATGAT+TGG | + | chr4_1:20694178-20694197 | Msa0539600:intron | 40.0% |
| GAGAAACTCATATTTGACGC+AGG | + | chr4_1:20694399-20694418 | Msa0539600:CDS | 40.0% | |
| ! | TCAATGGTTTTCCATGGTTG+TGG | - | chr4_1:20693152-20693171 | None:intergenic | 40.0% |
| AGAAACCATTGTGTGTTAGC+AGG | - | chr4_1:20693245-20693264 | None:intergenic | 40.0% | |
| ACACTGATGAATGGCAAAGA+AGG | + | chr4_1:20693276-20693295 | Msa0539600:CDS | 40.0% | |
| !! | CTGATAAGAAGCATTGAAGG+AGG | - | chr4_1:20693330-20693349 | None:intergenic | 40.0% |
| !! | CCACTGATAAGAAGCATTGA+AGG | - | chr4_1:20693333-20693352 | None:intergenic | 40.0% |
| CCTTCAATGCTTCTTATCAG+TGG | + | chr4_1:20693330-20693349 | Msa0539600:CDS | 40.0% | |
| TAGCCATGTGTTTGAAGGTT+TGG | + | chr4_1:20693590-20693609 | Msa0539600:CDS | 40.0% | |
| ACTCCAAACCTTCAAACACA+TGG | - | chr4_1:20693596-20693615 | None:intergenic | 40.0% | |
| ! | AATACTGTGCATTTGAGGTC+AGG | - | chr4_1:20693678-20693697 | None:intergenic | 40.0% |
| GGTCAAATACTGTGCATTTG+AGG | - | chr4_1:20693683-20693702 | None:intergenic | 40.0% | |
| AGTTACTTACAACCTGTGGT+TGG | - | chr4_1:20693704-20693723 | None:intergenic | 40.0% | |
| GACAAGTTACTTACAACCTG+TGG | - | chr4_1:20693708-20693727 | None:intergenic | 40.0% | |
| ! | CAGGTTGTAAGTAACTTGTC+TGG | + | chr4_1:20693708-20693727 | Msa0539600:CDS | 40.0% |
| TTGAGTAAAACAGCATCTGC+AGG | - | chr4_1:20693783-20693802 | None:intergenic | 40.0% | |
| !!! | TGCAGATGCTGTTTTACTCA+AGG | + | chr4_1:20693782-20693801 | Msa0539600:CDS | 40.0% |
| TCAACGACATCGGTAGTTAA+CGG | + | chr4_1:20693887-20693906 | Msa0539600:intron | 40.0% | |
| !! | ACCGATCTTAAAAGTGTCAG+CGG | + | chr4_1:20693944-20693963 | Msa0539600:intron | 40.0% |
| GCAGAACTGTCACTAATCTA+AGG | + | chr4_1:20693966-20693985 | Msa0539600:intron | 40.0% | |
| ! | TACAGTGGATTCTGCATGAT+TGG | + | chr4_1:20694178-20694197 | Msa0539600:intron | 40.0% |
| GAGAAACTCATATTTGACGC+AGG | + | chr4_1:20694399-20694418 | Msa0539600:CDS | 40.0% | |
| ATCTGCTATGCCTAGTTCCA+CGG | - | chr4_1:20693124-20693143 | None:intergenic | 45.0% | |
| AGGGTGGAGTTTCAAAGATG+AGG | - | chr4_1:20693190-20693209 | None:intergenic | 45.0% | |
| ! | GGACACTAACTTTAGAAGGG+TGG | - | chr4_1:20693206-20693225 | None:intergenic | 45.0% |
| ! | TGAAGCACTCCGCTAACAAA+TGG | - | chr4_1:20693375-20693394 | None:intergenic | 45.0% |
| ATCCATGTCGTCTGAACATG+TGG | + | chr4_1:20693394-20693413 | Msa0539600:CDS | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr4_1:20693412-20693431 | Msa0539600:CDS | 45.0% |
| CTCAGTGAGCCATTTCTTAG+AGG | - | chr4_1:20693424-20693443 | None:intergenic | 45.0% | |
| ! | CTCTAAGAAATGGCTCACTG+AGG | + | chr4_1:20693422-20693441 | Msa0539600:CDS | 45.0% |
| !! | CGCAAGAGGAGAGTCATTTT+GGG | + | chr4_1:20693470-20693489 | Msa0539600:CDS | 45.0% |
| GAGTATGTTTCAAGAGGCCA+TGG | + | chr4_1:20693527-20693546 | Msa0539600:CDS | 45.0% | |
| CAAACACATGGCTACACTCT+TGG | - | chr4_1:20693584-20693603 | None:intergenic | 45.0% | |
| GAGTGTAGCCATGTGTTTGA+AGG | + | chr4_1:20693585-20693604 | Msa0539600:CDS | 45.0% | |
| ! | GTTTGAAGGTTTGGAGTCTC+TGG | + | chr4_1:20693599-20693618 | Msa0539600:CDS | 45.0% |
| ! | TTGGAGTCTCTGGTTGATGT+TGG | + | chr4_1:20693609-20693628 | Msa0539600:CDS | 45.0% |
| ! | TCTCTGGTTGATGTTGGAAG+TGG | + | chr4_1:20693615-20693634 | Msa0539600:CDS | 45.0% |
| ! | CTCTGGTTGATGTTGGAAGT+GGG | + | chr4_1:20693616-20693635 | Msa0539600:CDS | 45.0% |
| TGAGGTCAGGAAAAGCTTCA+TGG | - | chr4_1:20693665-20693684 | None:intergenic | 45.0% | |
| CACAGTATTTGACCAACCAC+AGG | + | chr4_1:20693689-20693708 | Msa0539600:CDS | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr4_1:20693780-20693799 | None:intergenic | 45.0% | |
| !!! | GCCGCTGACACTTTTAAGAT+CGG | - | chr4_1:20693948-20693967 | None:intergenic | 45.0% |
| ATCTGCTATGCCTAGTTCCA+CGG | - | chr4_1:20693124-20693143 | None:intergenic | 45.0% | |
| AGGGTGGAGTTTCAAAGATG+AGG | - | chr4_1:20693190-20693209 | None:intergenic | 45.0% | |
| ! | GGACACTAACTTTAGAAGGG+TGG | - | chr4_1:20693206-20693225 | None:intergenic | 45.0% |
| ! | TGAAGCACTCCGCTAACAAA+TGG | - | chr4_1:20693375-20693394 | None:intergenic | 45.0% |
| ATCCATGTCGTCTGAACATG+TGG | + | chr4_1:20693394-20693413 | Msa0539600:CDS | 45.0% | |
| ! | TGTGGCACTCCTCTAAGAAA+TGG | + | chr4_1:20693412-20693431 | Msa0539600:CDS | 45.0% |
| CTCAGTGAGCCATTTCTTAG+AGG | - | chr4_1:20693424-20693443 | None:intergenic | 45.0% | |
| ! | CTCTAAGAAATGGCTCACTG+AGG | + | chr4_1:20693422-20693441 | Msa0539600:CDS | 45.0% |
| !! | CGCAAGAGGAGAGTCATTTT+GGG | + | chr4_1:20693470-20693489 | Msa0539600:CDS | 45.0% |
| GAGTATGTTTCAAGAGGCCA+TGG | + | chr4_1:20693527-20693546 | Msa0539600:CDS | 45.0% | |
| CAAACACATGGCTACACTCT+TGG | - | chr4_1:20693584-20693603 | None:intergenic | 45.0% | |
| GAGTGTAGCCATGTGTTTGA+AGG | + | chr4_1:20693585-20693604 | Msa0539600:CDS | 45.0% | |
| ! | GTTTGAAGGTTTGGAGTCTC+TGG | + | chr4_1:20693599-20693618 | Msa0539600:CDS | 45.0% |
| ! | TTGGAGTCTCTGGTTGATGT+TGG | + | chr4_1:20693609-20693628 | Msa0539600:CDS | 45.0% |
| ! | TCTCTGGTTGATGTTGGAAG+TGG | + | chr4_1:20693615-20693634 | Msa0539600:CDS | 45.0% |
| ! | CTCTGGTTGATGTTGGAAGT+GGG | + | chr4_1:20693616-20693635 | Msa0539600:CDS | 45.0% |
| TGAGGTCAGGAAAAGCTTCA+TGG | - | chr4_1:20693665-20693684 | None:intergenic | 45.0% | |
| CACAGTATTTGACCAACCAC+AGG | + | chr4_1:20693689-20693708 | Msa0539600:CDS | 45.0% | |
| AGTAAAACAGCATCTGCAGG+AGG | - | chr4_1:20693780-20693799 | None:intergenic | 45.0% | |
| !!! | GCCGCTGACACTTTTAAGAT+CGG | - | chr4_1:20693948-20693967 | None:intergenic | 45.0% |
| CTCAAATCAGCCGTGGAACT+AGG | + | chr4_1:20693111-20693130 | Msa0539600:CDS | 50.0% | |
| GCAGATGCAATCCACAACCA+TGG | + | chr4_1:20693138-20693157 | Msa0539600:CDS | 50.0% | |
| TTGCGCCTGCTAACACACAA+TGG | + | chr4_1:20693237-20693256 | Msa0539600:CDS | 50.0% | |
| TGCCACATGTTCAGACGACA+TGG | - | chr4_1:20693399-20693418 | None:intergenic | 50.0% | |
| GAAATGGCTCACTGAGGACA+AGG | + | chr4_1:20693428-20693447 | Msa0539600:CDS | 50.0% | |
| ! | AGTCTCTTTGAGAGCGCAAG+AGG | + | chr4_1:20693456-20693475 | Msa0539600:CDS | 50.0% |
| ! | GCGCAAGAGGAGAGTCATTT+TGG | + | chr4_1:20693469-20693488 | Msa0539600:CDS | 50.0% |
| GATCTGAGAATCAGCAGCCA+TGG | - | chr4_1:20693547-20693566 | None:intergenic | 50.0% | |
| GTTGATGTTGGAAGTGGGAG+AGG | + | chr4_1:20693621-20693640 | Msa0539600:CDS | 50.0% | |
| CTCAAATCAGCCGTGGAACT+AGG | + | chr4_1:20693111-20693130 | Msa0539600:CDS | 50.0% | |
| GCAGATGCAATCCACAACCA+TGG | + | chr4_1:20693138-20693157 | Msa0539600:CDS | 50.0% | |
| TTGCGCCTGCTAACACACAA+TGG | + | chr4_1:20693237-20693256 | Msa0539600:CDS | 50.0% | |
| TGCCACATGTTCAGACGACA+TGG | - | chr4_1:20693399-20693418 | None:intergenic | 50.0% | |
| GAAATGGCTCACTGAGGACA+AGG | + | chr4_1:20693428-20693447 | Msa0539600:CDS | 50.0% | |
| ! | AGTCTCTTTGAGAGCGCAAG+AGG | + | chr4_1:20693456-20693475 | Msa0539600:CDS | 50.0% |
| ! | GCGCAAGAGGAGAGTCATTT+TGG | + | chr4_1:20693469-20693488 | Msa0539600:CDS | 50.0% |
| GATCTGAGAATCAGCAGCCA+TGG | - | chr4_1:20693547-20693566 | None:intergenic | 50.0% | |
| GTTGATGTTGGAAGTGGGAG+AGG | + | chr4_1:20693621-20693640 | Msa0539600:CDS | 50.0% | |
| !! | CACGGCTGATTTGAGTGCCA+TGG | - | chr4_1:20693106-20693125 | None:intergenic | 55.0% |
| CATGGCACTCAAATCAGCCG+TGG | + | chr4_1:20693104-20693123 | Msa0539600:CDS | 55.0% | |
| GCAGGCGCAAGAGACGATAA+AGG | - | chr4_1:20693227-20693246 | None:intergenic | 55.0% | |
| GGCTACACTCTTGGAGTGCA+AGG | - | chr4_1:20693575-20693594 | None:intergenic | 55.0% | |
| GATGTTGGAAGTGGGAGAGG+AGG | + | chr4_1:20693624-20693643 | Msa0539600:CDS | 55.0% | |
| !! | CACGGCTGATTTGAGTGCCA+TGG | - | chr4_1:20693106-20693125 | None:intergenic | 55.0% |
| CATGGCACTCAAATCAGCCG+TGG | + | chr4_1:20693104-20693123 | Msa0539600:CDS | 55.0% | |
| GCAGGCGCAAGAGACGATAA+AGG | - | chr4_1:20693227-20693246 | None:intergenic | 55.0% | |
| GGCTACACTCTTGGAGTGCA+AGG | - | chr4_1:20693575-20693594 | None:intergenic | 55.0% | |
| GATGTTGGAAGTGGGAGAGG+AGG | + | chr4_1:20693624-20693643 | Msa0539600:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 20693015 | 20694485 | 20693015 | ID=Msa0539600;Name=Msa0539600 |
| chr4_1 | mRNA | 20693015 | 20694485 | 20693015 | ID=Msa0539600-mRNA-1;Parent=Msa0539600;Name=Msa0539600-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|363 |
| chr4_1 | exon | 20693015 | 20693803 | 20693015 | ID=Msa0539600-mRNA-1:exon:5917;Parent=Msa0539600-mRNA-1 |
| chr4_1 | exon | 20694183 | 20694485 | 20694183 | ID=Msa0539600-mRNA-1:exon:5918;Parent=Msa0539600-mRNA-1 |
| chr4_1 | CDS | 20693015 | 20693803 | 20693015 | ID=Msa0539600-mRNA-1:cds;Parent=Msa0539600-mRNA-1 |
| chr4_1 | CDS | 20694183 | 20694485 | 20694183 | ID=Msa0539600-mRNA-1:cds;Parent=Msa0539600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
