Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459490 | XP_024640378.1 | 95.374 | 281 | 4 | 1 | 1 | 272 | 1 | 281 | 0.0 | 547 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459490 | sp|Q9ZVI3|QKIL3_ARATH | 64.041 | 292 | 75 | 10 | 1 | 270 | 1 | 284 | 7.34e-113 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459490 | G7K5T8 | 95.374 | 281 | 4 | 1 | 1 | 272 | 1 | 281 | 0.0 | 547 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1446250 | Msa1459490 | 0.857929 | 1.167105e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459490 | MtrunA17_Chr5g0432901 | 95.374 | 281 | 4 | 1 | 1 | 272 | 1 | 281 | 0.0 | 547 |
| Msa1459490 | MtrunA17_Chr3g0108401 | 76.806 | 263 | 46 | 4 | 24 | 272 | 1 | 262 | 8.88e-143 | 401 |
| Msa1459490 | MtrunA17_Chr7g0245301 | 66.551 | 287 | 69 | 7 | 1 | 269 | 1 | 278 | 2.78e-122 | 350 |
| Msa1459490 | MtrunA17_Chr8g0334451 | 68.231 | 277 | 72 | 6 | 3 | 270 | 5 | 274 | 2.13e-121 | 347 |
| Msa1459490 | MtrunA17_Chr3g0080071 | 52.727 | 275 | 113 | 3 | 10 | 270 | 20 | 291 | 1.06e-88 | 265 |
| Msa1459490 | MtrunA17_Chr2g0276961 | 50.189 | 265 | 109 | 6 | 28 | 270 | 47 | 310 | 9.35e-69 | 215 |
| Msa1459490 | MtrunA17_Chr7g0267531 | 69.412 | 85 | 16 | 2 | 85 | 163 | 1 | 81 | 3.61e-33 | 116 |
| Msa1459490 | MtrunA17_Chr4g0018581 | 44.800 | 125 | 59 | 4 | 126 | 248 | 217 | 333 | 9.01e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1459490 | AT2G38610.2 | 64.041 | 292 | 75 | 10 | 1 | 270 | 1 | 284 | 7.46e-114 | 329 |
| Msa1459490 | AT2G38610.1 | 64.041 | 292 | 75 | 10 | 1 | 270 | 1 | 284 | 7.46e-114 | 329 |
| Msa1459490 | AT3G08620.1 | 61.458 | 288 | 86 | 6 | 1 | 270 | 1 | 281 | 2.39e-113 | 328 |
| Msa1459490 | AT3G08620.2 | 61.667 | 240 | 70 | 4 | 49 | 270 | 1 | 236 | 8.03e-95 | 279 |
| Msa1459490 | AT5G56140.1 | 51.228 | 285 | 120 | 7 | 5 | 272 | 32 | 314 | 9.17e-87 | 261 |
| Msa1459490 | AT4G26480.3 | 51.601 | 281 | 119 | 7 | 5 | 270 | 28 | 306 | 4.59e-85 | 257 |
| Msa1459490 | AT4G26480.1 | 51.601 | 281 | 119 | 7 | 5 | 270 | 28 | 306 | 4.59e-85 | 257 |
| Msa1459490 | AT1G09660.1 | 51.938 | 258 | 101 | 3 | 33 | 271 | 44 | 297 | 5.49e-80 | 243 |
| Msa1459490 | AT1G09660.3 | 51.938 | 258 | 101 | 3 | 33 | 271 | 44 | 297 | 5.49e-80 | 243 |
| Msa1459490 | AT4G26480.2 | 53.778 | 225 | 87 | 5 | 59 | 270 | 1 | 221 | 3.28e-74 | 226 |
| Msa1459490 | AT1G09660.2 | 50.242 | 207 | 90 | 1 | 33 | 226 | 44 | 250 | 1.04e-61 | 196 |
| Msa1459490 | AT5G51300.1 | 44.800 | 125 | 59 | 3 | 126 | 248 | 244 | 360 | 3.76e-24 | 102 |
| Msa1459490 | AT5G51300.2 | 44.800 | 125 | 59 | 3 | 126 | 248 | 244 | 360 | 3.76e-24 | 102 |
| Msa1459490 | AT5G51300.3 | 44.800 | 125 | 59 | 3 | 126 | 248 | 244 | 360 | 3.76e-24 | 102 |
Find 79 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAATGTTGTTGATTTA+AGG | 0.084192 | tig0040276:-3547 | Msa1459490:CDS |
| AACTTTGTTGGGAGGCTTCT+TGG | 0.164659 | tig0040276:-4061 | Msa1459490:CDS |
| TTGCTTCTCATGTTTATATT+TGG | 0.166777 | tig0040276:+5612 | Msa1459490:intergenic |
| ATAGAGAGAGACACACTTTA+AGG | 0.180017 | tig0040276:-5950 | Msa1459490:five_prime_UTR |
| GTGATTCTATGTTTCTTAAC+AGG | 0.262166 | tig0040276:-5806 | Msa1459490:five_prime_UTR |
| TAAAGACTATTGGTCAGTTT+TGG | 0.289059 | tig0040276:+2805 | Msa1459490:intergenic |
| GAATTAGCCCTTGCTGTTCC+TGG | 0.348426 | tig0040276:+5636 | Msa1459490:intergenic |
| TACTAATCTACTTACATATA+AGG | 0.350855 | tig0040276:-5915 | Msa1459490:five_prime_UTR |
| TTGGGAGGCTTCTTGGCCCA+AGG | 0.368655 | tig0040276:-4054 | Msa1459490:CDS |
| TTAATGTAGATAAAGACTAT+TGG | 0.396227 | tig0040276:+2795 | Msa1459490:intergenic |
| ATTTAAGAGTCTAGTGCATA+AGG | 0.401174 | tig0040276:+5222 | Msa1459490:intergenic |
| ATCATTTCATTAGAGGTGAA+TGG | 0.424912 | tig0040276:+2836 | Msa1459490:intergenic |
| CGCTTCAACGAATTACCCCT+TGG | 0.431671 | tig0040276:+4037 | Msa1459490:intergenic |
| TGGGAGGCTTCTTGGCCCAA+GGG | 0.460083 | tig0040276:-4053 | Msa1459490:CDS |
| GACACTACATCAAGTTTCAC+AGG | 0.462265 | tig0040276:-4752 | Msa1459490:CDS |
| TCATTCAAGTGCTCAAATCC+TGG | 0.465607 | tig0040276:+3602 | Msa1459490:intergenic |
| TGCACTAGACTCTTAAATCA+AGG | 0.470726 | tig0040276:-5217 | Msa1459490:intron |
| CTACCAACTCAGTTAAGTAT+TGG | 0.476363 | tig0040276:+5284 | Msa1459490:intergenic |
| CATCATTGTGTTCTCCAACT+TGG | 0.480524 | tig0040276:+2692 | Msa1459490:intergenic |
| TCAAATATCTTACAGTTGGA+TGG | 0.482767 | tig0040276:+4261 | Msa1459490:intergenic |
| TTCAATAAAAGACTTCGATA+AGG | 0.496581 | tig0040276:-3969 | Msa1459490:intron |
| TTCAGTTCAACTTTGTTGGG+AGG | 0.499629 | tig0040276:-4069 | Msa1459490:intron |
| CTTAAATCAACAACATTGAC+AGG | 0.499752 | tig0040276:+3548 | Msa1459490:intergenic |
| TTTAAGAGTCTAGTGCATAA+GGG | 0.500486 | tig0040276:+5223 | Msa1459490:intergenic |
| CGTGTATTTATCAGAGGGAA+AGG | 0.513765 | tig0040276:-3992 | Msa1459490:CDS |
| GAGTTGCTGAGGGGAAGGCC+AGG | 0.515410 | tig0040276:-3620 | Msa1459490:CDS |
| AAGCGAGTGGAGGCTACTAC+AGG | 0.516719 | tig0040276:-4019 | Msa1459490:CDS |
| GAACACAATGATGTGGAGAA+AGG | 0.520536 | tig0040276:-2682 | Msa1459490:three_prime_UTR |
| ATTGATAAAAGAGAAGGTAG+TGG | 0.525553 | tig0040276:+5848 | Msa1459490:intergenic |
| AAGGTAGTGGATGAAAAGAA+AGG | 0.533639 | tig0040276:+5861 | Msa1459490:intergenic |
| CTTGATGTAGTGTCTAAAGA+AGG | 0.537119 | tig0040276:+4761 | Msa1459490:intergenic |
| ATCAGGGGCTAAATGTGGAT+TGG | 0.537326 | tig0040276:-4355 | Msa1459490:intron |
| TAGGCTTGACACTAAACCCT+TGG | 0.537437 | tig0040276:+4792 | Msa1459490:intergenic |
| AGAGTATATAGAAAATTCAA+AGG | 0.538811 | tig0040276:+5730 | Msa1459490:intergenic |
| AGGAAGAGTTGCTGAGGGGA+AGG | 0.539626 | tig0040276:-3625 | Msa1459490:CDS |
| AAGGGTAAGACTTGCATGAA+AGG | 0.543152 | tig0040276:+5241 | Msa1459490:intergenic |
| TTGATGATATAATGCCAAGT+TGG | 0.543259 | tig0040276:-2706 | Msa1459490:three_prime_UTR |
| GTAGCAGAATATCAGAAGCT+TGG | 0.544343 | tig0040276:-5265 | Msa1459490:CDS |
| TTAAGGGCTTCTGGAAAGAG+TGG | 0.550881 | tig0040276:-4827 | Msa1459490:CDS |
| TGTGAAGAAGATGTTGCGCT+TGG | 0.554183 | tig0040276:-4300 | Msa1459490:CDS |
| GAGTATATAGAAAATTCAAA+GGG | 0.563198 | tig0040276:+5731 | Msa1459490:intergenic |
| TAGCCAATACTTAACTGAGT+TGG | 0.564535 | tig0040276:-5287 | Msa1459490:CDS |
| GCTTCAACGAATTACCCCTT+GGG | 0.565692 | tig0040276:+4038 | Msa1459490:intergenic |
| ATCTAAAGGAAGAGTTGCTG+AGG | 0.572490 | tig0040276:-3631 | Msa1459490:intron |
| AGAAAAGATGTCTGATAACA+AGG | 0.574895 | tig0040276:+5767 | Msa1459490:intergenic |
| ATGTGAGAATTTGAGACTGC+TGG | 0.575507 | tig0040276:+4323 | Msa1459490:intergenic |
| CTTACATCAGGGGCTAAATG+TGG | 0.578036 | tig0040276:-4360 | Msa1459490:intron |
| GGGTAATTCGTTGAAGCGAG+TGG | 0.578269 | tig0040276:-4032 | Msa1459490:CDS |
| AGCCCTTGCTGTTCCTGGTG+AGG | 0.578872 | tig0040276:+5641 | Msa1459490:intergenic |
| GGGAGGCTTCTTGGCCCAAG+GGG | 0.580940 | tig0040276:-4052 | Msa1459490:CDS |
| AATGATGTGGAGAAAGGAGA+AGG | 0.583058 | tig0040276:-2676 | Msa1459490:three_prime_UTR |
| AAAATAGAAATATAGATAGA+GGG | 0.586267 | tig0040276:+5889 | Msa1459490:intergenic |
| ATGATGTGGAGAAAGGAGAA+GGG | 0.588856 | tig0040276:-2675 | Msa1459490:three_prime_UTR |
| GTGGATTGATGCAGAACCAA+GGG | 0.591733 | tig0040276:-4808 | Msa1459490:CDS |
| GGTTGCCGTGTATTTATCAG+AGG | 0.595636 | tig0040276:-3998 | Msa1459490:CDS |
| GATGTCTGATAACAAGGGTG+TGG | 0.598881 | tig0040276:+5773 | Msa1459490:intergenic |
| CTAAATGTGGATTGGCAAAG+AGG | 0.599596 | tig0040276:-4347 | Msa1459490:CDS |
| TCTAAAGAAGGCATAAGACT+AGG | 0.599631 | tig0040276:+4773 | Msa1459490:intergenic |
| TGTTTGATTGATAAAAGAGA+AGG | 0.603229 | tig0040276:+5842 | Msa1459490:intergenic |
| TGATGTGGAGAAAGGAGAAG+GGG | 0.609543 | tig0040276:-2674 | Msa1459490:three_prime_UTR |
| TCTAAAGGAAGAGTTGCTGA+GGG | 0.609826 | tig0040276:-3630 | Msa1459490:intron |
| CTTTCCCTCTGATAAATACA+CGG | 0.616803 | tig0040276:+3993 | Msa1459490:intergenic |
| CTACATCAAGTTTCACAGGA+TGG | 0.618603 | tig0040276:-4748 | Msa1459490:CDS |
| ACAGTTGGATGGTTATCATG+AGG | 0.620762 | tig0040276:+4272 | Msa1459490:intergenic |
| TTTCCTCACCAGGAACAGCA+AGG | 0.622680 | tig0040276:-5644 | Msa1459490:CDS |
| TTCCTCACCAGGAACAGCAA+GGG | 0.622720 | tig0040276:-5643 | Msa1459490:CDS |
| AATCACAAGACATTTACAAG+AGG | 0.624320 | tig0040276:-2934 | Msa1459490:CDS |
| GAGACACTACCACTCAGTTG+AGG | 0.628248 | tig0040276:+2860 | Msa1459490:intergenic |
| AGTGGATTGATGCAGAACCA+AGG | 0.632569 | tig0040276:-4809 | Msa1459490:CDS |
| GCCTCAATCAAAATGTGCAG+TGG | 0.633269 | tig0040276:+3578 | Msa1459490:intergenic |
| AACAATCAGATTTCCTCACC+AGG | 0.634098 | tig0040276:-5654 | Msa1459490:CDS |
| GTTGCCGTGTATTTATCAGA+GGG | 0.636330 | tig0040276:-3997 | Msa1459490:CDS |
| GAAAAGATGTCTGATAACAA+GGG | 0.636765 | tig0040276:+5768 | Msa1459490:intergenic |
| AGTTGGAGAACACAATGATG+TGG | 0.636907 | tig0040276:-2689 | Msa1459490:three_prime_UTR |
| TAATCTACTTACATATAAGG+TGG | 0.649861 | tig0040276:-5912 | Msa1459490:five_prime_UTR |
| GAAGAGAGTCCTCAACTGAG+TGG | 0.680778 | tig0040276:-2869 | Msa1459490:CDS |
| TAATTCGTTGAAGCGAGTGG+AGG | 0.684712 | tig0040276:-4029 | Msa1459490:CDS |
| CGAAGAGCTACTCAAACCTG+TGG | 0.704906 | tig0040276:-3501 | Msa1459490:intron |
| CTAAAGGAAGAGTTGCTGAG+GGG | 0.733546 | tig0040276:-3629 | Msa1459490:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATCCATATATTAAATTT+TGG | - | tig0040276:3274-3293 | Msa1459490:intron | 10.0% |
| !!! | ATTTTATAATTTTTTTCCAA+TGG | + | tig0040276:3911-3930 | Msa1459490:intergenic | 10.0% |
| !! | AAAATAGAAATATAGATAGA+GGG | + | tig0040276:2572-2591 | Msa1459490:intergenic | 15.0% |
| !! | AAAAATAGAAATATAGATAG+AGG | + | tig0040276:2573-2592 | Msa1459490:intergenic | 15.0% |
| !!! | CATATACATATAACTATTTT+TGG | + | tig0040276:3099-3118 | Msa1459490:intergenic | 15.0% |
| !! | CAAAACCAAAATTTAATATA+TGG | + | tig0040276:3282-3301 | Msa1459490:intergenic | 15.0% |
| !! | TCTGTCAAATATATATATAT+GGG | + | tig0040276:3474-3493 | Msa1459490:intergenic | 15.0% |
| !! | TTCTGTCAAATATATATATA+TGG | + | tig0040276:3475-3494 | Msa1459490:intergenic | 15.0% |
| !!! | CATATTTAACAATTTTTAGT+TGG | - | tig0040276:3548-3567 | Msa1459490:CDS | 15.0% |
| !! | TAGCAAATTTAATGATTAAA+GGG | + | tig0040276:4062-4081 | Msa1459490:intergenic | 15.0% |
| !! | TTAGCAAATTTAATGATTAA+AGG | + | tig0040276:4063-4082 | Msa1459490:intergenic | 15.0% |
| !! | ATGTATGATCATATTAAAAA+TGG | + | tig0040276:4237-4256 | Msa1459490:intergenic | 15.0% |
| !!! | TACTTTTATTATATTTTGAC+AGG | - | tig0040276:5882-5901 | Msa1459490:five_prime_UTR | 15.0% |
| !! | TACTAATCTACTTACATATA+AGG | - | tig0040276:2543-2562 | Msa1459490:three_prime_UTR | 20.0% |
| !! | GAGTATATAGAAAATTCAAA+GGG | + | tig0040276:2730-2749 | Msa1459490:intergenic | 20.0% |
| !! | AGAGTATATAGAAAATTCAA+AGG | + | tig0040276:2731-2750 | Msa1459490:intergenic | 20.0% |
| !! | TCAACACAAAACAAAAAAAA+AGG | + | tig0040276:2765-2784 | Msa1459490:intergenic | 20.0% |
| !!! | TGATGAGTTTAATTAACTTT+TGG | - | tig0040276:3122-3141 | Msa1459490:intron | 20.0% |
| !! | GATTCAAGTAAAATAAAAAG+TGG | + | tig0040276:3323-3342 | Msa1459490:intergenic | 20.0% |
| !!! | CTTTTTATTTTACTTGAATC+AGG | - | tig0040276:3323-3342 | Msa1459490:intron | 20.0% |
| !!! | TCTCATTTTTTTATGTTATG+AGG | - | tig0040276:3387-3406 | Msa1459490:intron | 20.0% |
| !!! | TTTATTACCAGAGATTTTAA+GGG | - | tig0040276:3615-3634 | Msa1459490:CDS | 20.0% |
| !! | ACACCTTTAATTCAAATTAA+AGG | + | tig0040276:3871-3890 | Msa1459490:intergenic | 20.0% |
| !!! | ACATTTTAATGTTAAACCAT+TGG | - | tig0040276:3892-3911 | Msa1459490:intron | 20.0% |
| !! | CATGATAGAAATAAATGTTA+TGG | + | tig0040276:3983-4002 | Msa1459490:intergenic | 20.0% |
| !! | TGAATGAAAATGAAATAGAA+GGG | + | tig0040276:4017-4036 | Msa1459490:intergenic | 20.0% |
| !! | ATGAATGAAAATGAAATAGA+AGG | + | tig0040276:4018-4037 | Msa1459490:intergenic | 20.0% |
| !! | TTGAAAAATATAAATACCAC+AGG | + | tig0040276:4976-4995 | Msa1459490:intergenic | 20.0% |
| !!! | ATATTTTGATTTTACCAAAC+CGG | - | tig0040276:5213-5232 | Msa1459490:intron | 20.0% |
| !! | ATATAGTCAAGATATCAATA+CGG | - | tig0040276:5408-5427 | Msa1459490:intron | 20.0% |
| !!! | TCTTTTTATCATTTCATTAG+AGG | + | tig0040276:5632-5651 | Msa1459490:intergenic | 20.0% |
| !! | TTAATGTAGATAAAGACTAT+TGG | + | tig0040276:5666-5685 | Msa1459490:intergenic | 20.0% |
| ! | TAATCTACTTACATATAAGG+TGG | - | tig0040276:2546-2565 | Msa1459490:three_prime_UTR | 25.0% |
| ! | TGTTTGATTGATAAAAGAGA+AGG | + | tig0040276:2619-2638 | Msa1459490:intergenic | 25.0% |
| ! | TTGCTTCTCATGTTTATATT+TGG | + | tig0040276:2849-2868 | Msa1459490:intergenic | 25.0% |
| !! | ACTGAGTTTTCTTAATAACT+TGG | - | tig0040276:3357-3376 | Msa1459490:intron | 25.0% |
| !! | CTTTATTACCAGAGATTTTA+AGG | - | tig0040276:3614-3633 | Msa1459490:CDS | 25.0% |
| !!! | ACGCCTTTAATTTGAATTAA+AGG | - | tig0040276:3865-3884 | Msa1459490:intron | 25.0% |
| ! | TAAAATAATATCTGATCCCT+TGG | - | tig0040276:3925-3944 | Msa1459490:intron | 25.0% |
| ! | GAATGAAAATGAAATAGAAG+GGG | + | tig0040276:4016-4035 | Msa1459490:intergenic | 25.0% |
| ! | TGTTTCAAATATCTTACAGT+TGG | + | tig0040276:4204-4223 | Msa1459490:intergenic | 25.0% |
| ! | TTTATTTAGGAATTCACATG+AGG | - | tig0040276:4359-4378 | Msa1459490:intron | 25.0% |
| !! | TATTTTCAGTTCAACTTTGT+TGG | - | tig0040276:4385-4404 | Msa1459490:intron | 25.0% |
| !! | ATTTTCAGTTCAACTTTGTT+GGG | - | tig0040276:4386-4405 | Msa1459490:intron | 25.0% |
| ! | TTCAATAAAAGACTTCGATA+AGG | - | tig0040276:4489-4508 | Msa1459490:intron | 25.0% |
| !!! | CAAATTAGGTTTTTTTCAGT+TGG | + | tig0040276:4543-4562 | Msa1459490:intergenic | 25.0% |
| ! | TGTGTAGATAATATGATGAA+TGG | - | tig0040276:4615-4634 | Msa1459490:intron | 25.0% |
| ! | ATAGGATTAGATTTGAAAAC+AGG | + | tig0040276:4720-4739 | Msa1459490:intergenic | 25.0% |
| ! | TATGAAAAGAAGGTTTGAAT+AGG | + | tig0040276:4738-4757 | Msa1459490:intergenic | 25.0% |
| ! | AACAAACACATATGAAAAGA+AGG | + | tig0040276:4748-4767 | Msa1459490:intergenic | 25.0% |
| ! | CCTTTAGATTATAACAAAGT+AGG | + | tig0040276:4816-4835 | Msa1459490:intergenic | 25.0% |
| !! | CCTACTTTGTTATAATCTAA+AGG | - | tig0040276:4813-4832 | Msa1459490:CDS | 25.0% |
| ! | CATGAAAATGCATGTTATAA+TGG | + | tig0040276:5065-5084 | Msa1459490:intergenic | 25.0% |
| !!! | TTCAAGTTACATTTTAAAGC+CGG | + | tig0040276:5235-5254 | Msa1459490:intergenic | 25.0% |
| ! | CACAAAAGAATAATAAAGGA+TGG | + | tig0040276:5497-5516 | Msa1459490:intergenic | 25.0% |
| !!! | TATTTTGACAGGTTTGTTAA+TGG | - | tig0040276:5893-5912 | Msa1459490:five_prime_UTR | 25.0% |
| ATTGATAAAAGAGAAGGTAG+TGG | + | tig0040276:2613-2632 | Msa1459490:intergenic | 30.0% | |
| GTGATTCTATGTTTCTTAAC+AGG | - | tig0040276:2652-2671 | Msa1459490:three_prime_UTR | 30.0% | |
| ! | GTTTCTTAACAGGATTTTTG+AGG | - | tig0040276:2662-2681 | Msa1459490:three_prime_UTR | 30.0% |
| GAAAAGATGTCTGATAACAA+GGG | + | tig0040276:2693-2712 | Msa1459490:intergenic | 30.0% | |
| AGAAAAGATGTCTGATAACA+AGG | + | tig0040276:2694-2713 | Msa1459490:intergenic | 30.0% | |
| ! | TTTTGTGTTGAATTGATGTC+TGG | - | tig0040276:2774-2793 | Msa1459490:three_prime_UTR | 30.0% |
| !! | GAAGCAATTTTGATGTTGAT+AGG | - | tig0040276:2862-2881 | Msa1459490:CDS | 30.0% |
| ! | ACTATTTGAGTTCAATCGTT+TGG | + | tig0040276:2998-3017 | Msa1459490:intergenic | 30.0% |
| TTTAAGAGTCTAGTGCATAA+GGG | + | tig0040276:3238-3257 | Msa1459490:intergenic | 30.0% | |
| ATTTAAGAGTCTAGTGCATA+AGG | + | tig0040276:3239-3258 | Msa1459490:intergenic | 30.0% | |
| TATACGAACAGACATAAAGT+TGG | + | tig0040276:3581-3600 | Msa1459490:intergenic | 30.0% | |
| TTACAAAAAATGCAGACCAA+GGG | + | tig0040276:3944-3963 | Msa1459490:intergenic | 30.0% | |
| TTTACAAAAAATGCAGACCA+AGG | + | tig0040276:3945-3964 | Msa1459490:intergenic | 30.0% | |
| ATGAAATAGAAGGGGAATAT+TGG | + | tig0040276:4008-4027 | Msa1459490:intergenic | 30.0% | |
| ATTAAGTCCAATCTTACATC+AGG | - | tig0040276:4086-4105 | Msa1459490:intron | 30.0% | |
| TTAAGTCCAATCTTACATCA+GGG | - | tig0040276:4087-4106 | Msa1459490:intron | 30.0% | |
| TCAAATATCTTACAGTTGGA+TGG | + | tig0040276:4200-4219 | Msa1459490:intergenic | 30.0% | |
| !!! | CTCTCACGCTTATTTTATTT+AGG | - | tig0040276:4346-4365 | Msa1459490:CDS | 30.0% |
| TAATAGTGTGACAGCAAATT+AGG | + | tig0040276:4557-4576 | Msa1459490:intergenic | 30.0% | |
| ATCTTAAAACCGAATTCGTA+AGG | - | tig0040276:4673-4692 | Msa1459490:intron | 30.0% | |
| TGAAAACAGGTTATAAAGAG+TGG | + | tig0040276:4707-4726 | Msa1459490:intergenic | 30.0% | |
| CTTAAATCAACAACATTGAC+AGG | + | tig0040276:4913-4932 | Msa1459490:intergenic | 30.0% | |
| !! | CTGTCAATGTTGTTGATTTA+AGG | - | tig0040276:4911-4930 | Msa1459490:intron | 30.0% |
| ! | ATAACATGCATTTTCATGCA+AGG | - | tig0040276:5067-5086 | Msa1459490:intron | 30.0% |
| GGAAAGTAAAAGAACAAACT+TGG | + | tig0040276:5098-5117 | Msa1459490:intergenic | 30.0% | |
| TTACTTTCCGAAGTTAAAAG+AGG | - | tig0040276:5109-5128 | Msa1459490:intron | 30.0% | |
| ! | CGGTTGTAAAATGTTTTACA+CGG | - | tig0040276:5428-5447 | Msa1459490:intron | 30.0% |
| ! | GGTTGTAAAATGTTTTACAC+GGG | - | tig0040276:5429-5448 | Msa1459490:intron | 30.0% |
| CCTGCACAAAAGAATAATAA+AGG | + | tig0040276:5501-5520 | Msa1459490:intergenic | 30.0% | |
| ! | CCTTTATTATTCTTTTGTGC+AGG | - | tig0040276:5498-5517 | Msa1459490:intron | 30.0% |
| AATCACAAGACATTTACAAG+AGG | - | tig0040276:5524-5543 | Msa1459490:intron | 30.0% | |
| ATCATTTCATTAGAGGTGAA+TGG | + | tig0040276:5625-5644 | Msa1459490:intergenic | 30.0% | |
| ! | TAAAGACTATTGGTCAGTTT+TGG | + | tig0040276:5656-5675 | Msa1459490:intergenic | 30.0% |
| ! | TTGATGATATAATGCCAAGT+TGG | - | tig0040276:5752-5771 | Msa1459490:five_prime_UTR | 30.0% |
| ATAGAGAGAGACACACTTTA+AGG | - | tig0040276:2508-2527 | Msa1459490:three_prime_UTR | 35.0% | |
| !! | AAGGTAGTGGATGAAAAGAA+AGG | + | tig0040276:2600-2619 | Msa1459490:intergenic | 35.0% |
| TGAAGATGAACCTAGTATTC+CGG | + | tig0040276:3056-3075 | Msa1459490:intergenic | 35.0% | |
| TAGCCAATACTTAACTGAGT+TGG | - | tig0040276:3171-3190 | Msa1459490:intron | 35.0% | |
| CTACCAACTCAGTTAAGTAT+TGG | + | tig0040276:3177-3196 | Msa1459490:intergenic | 35.0% | |
| TGCACTAGACTCTTAAATCA+AGG | - | tig0040276:3241-3260 | Msa1459490:intron | 35.0% | |
| CTAGACTCTTAAATCAAGGT+TGG | - | tig0040276:3245-3264 | Msa1459490:intron | 35.0% | |
| ! | TCTAAAGAAGGCATAAGACT+AGG | + | tig0040276:3688-3707 | Msa1459490:intergenic | 35.0% |
| CTTGATGTAGTGTCTAAAGA+AGG | + | tig0040276:3700-3719 | Msa1459490:intergenic | 35.0% | |
| GAATGTAATCGTGTTAGTGT+CGG | - | tig0040276:3826-3845 | Msa1459490:intron | 35.0% | |
| ! | ATTCAAATTAAAGGCGTGTC+TGG | + | tig0040276:3862-3881 | Msa1459490:intergenic | 35.0% |
| TAAGTCCAATCTTACATCAG+GGG | - | tig0040276:4088-4107 | Msa1459490:intron | 35.0% | |
| CTTTCCCTCTGATAAATACA+CGG | + | tig0040276:4468-4487 | Msa1459490:intergenic | 35.0% | |
| TGGTCTAAATTGATAGACTC+TGG | - | tig0040276:4635-4654 | Msa1459490:intron | 35.0% | |
| TTAAAACCGAATTCGTAAGG+TGG | - | tig0040276:4676-4695 | Msa1459490:intron | 35.0% | |
| !! | TATAATGGACAGTGTGTCAA+GGG | + | tig0040276:5050-5069 | Msa1459490:intergenic | 35.0% |
| !! | TTATAATGGACAGTGTGTCA+AGG | + | tig0040276:5051-5070 | Msa1459490:intergenic | 35.0% |
| !!! | TCCAAGTCCTCTTTTAACTT+CGG | + | tig0040276:5119-5138 | Msa1459490:intergenic | 35.0% |
| !!! | GTTACATTTTAAAGCCGGTT+TGG | + | tig0040276:5230-5249 | Msa1459490:intergenic | 35.0% |
| AGTCATGTAGTTGTAGATCT+CGG | + | tig0040276:5287-5306 | Msa1459490:intergenic | 35.0% | |
| GAGAATCCATTTCCTCTAAA+TGG | - | tig0040276:5318-5337 | Msa1459490:intron | 35.0% | |
| ! | ACAATGAGTTTTCCTGTAAC+AGG | + | tig0040276:5347-5366 | Msa1459490:intergenic | 35.0% |
| AACAATCAGATTTCCTCACC+AGG | - | tig0040276:2804-2823 | Msa1459490:exon | 40.0% | |
| TCAGACTGATTGACGAATTC+CGG | - | tig0040276:3034-3053 | Msa1459490:intron | 40.0% | |
| TTGACGAATTCCGGAATACT+AGG | - | tig0040276:3043-3062 | Msa1459490:intron | 40.0% | |
| GTAGCAGAATATCAGAAGCT+TGG | - | tig0040276:3193-3212 | Msa1459490:intron | 40.0% | |
| AAGGGTAAGACTTGCATGAA+AGG | + | tig0040276:3220-3239 | Msa1459490:intergenic | 40.0% | |
| GACACTACATCAAGTTTCAC+AGG | - | tig0040276:3706-3725 | Msa1459490:intron | 40.0% | |
| CTACATCAAGTTTCACAGGA+TGG | - | tig0040276:3710-3729 | Msa1459490:intron | 40.0% | |
| TTTAGCCCCTGATGTAAGAT+TGG | + | tig0040276:4096-4115 | Msa1459490:intergenic | 40.0% | |
| !! | CTAAATGTGGATTGGCAAAG+AGG | - | tig0040276:4111-4130 | Msa1459490:intron | 40.0% |
| ! | ATGTGAGAATTTGAGACTGC+TGG | + | tig0040276:4138-4157 | Msa1459490:intergenic | 40.0% |
| ACAGTTGGATGGTTATCATG+AGG | + | tig0040276:4189-4208 | Msa1459490:intergenic | 40.0% | |
| TTCAGTTCAACTTTGTTGGG+AGG | - | tig0040276:4389-4408 | Msa1459490:intron | 40.0% | |
| GTTGCCGTGTATTTATCAGA+GGG | - | tig0040276:4461-4480 | Msa1459490:intron | 40.0% | |
| CGTGTATTTATCAGAGGGAA+AGG | - | tig0040276:4466-4485 | Msa1459490:intron | 40.0% | |
| ! | AGGTATTTTCTCTCCCTTAG+TGG | - | tig0040276:4509-4528 | Msa1459490:intron | 40.0% |
| GTTGGAAAACAGTCCACTAA+GGG | + | tig0040276:4525-4544 | Msa1459490:intergenic | 40.0% | |
| AGTTGGAAAACAGTCCACTA+AGG | + | tig0040276:4526-4545 | Msa1459490:intergenic | 40.0% | |
| CAAGCAATATTGTTTGCGCA+AGG | + | tig0040276:4777-4796 | Msa1459490:intergenic | 40.0% | |
| ATCTAAAGGAAGAGTTGCTG+AGG | - | tig0040276:4827-4846 | Msa1459490:CDS | 40.0% | |
| TCTAAAGGAAGAGTTGCTGA+GGG | - | tig0040276:4828-4847 | Msa1459490:CDS | 40.0% | |
| TCATTCAAGTGCTCAAATCC+TGG | + | tig0040276:4859-4878 | Msa1459490:intergenic | 40.0% | |
| !!! | ACCACTGCACATTTTGATTG+AGG | - | tig0040276:4879-4898 | Msa1459490:intron | 40.0% |
| TCCGAAGTTAAAAGAGGACT+TGG | - | tig0040276:5115-5134 | Msa1459490:intron | 40.0% | |
| ACTTGGATTTCCTGTGGTAA+GGG | - | tig0040276:5132-5151 | Msa1459490:intron | 40.0% | |
| TGTATACTTTCCCTTACCAC+AGG | + | tig0040276:5145-5164 | Msa1459490:intergenic | 40.0% | |
| AGGCTTCCATTTAGAGGAAA+TGG | + | tig0040276:5327-5346 | Msa1459490:intergenic | 40.0% | |
| TGTAACAGGCTTCCATTTAG+AGG | + | tig0040276:5333-5352 | Msa1459490:intergenic | 40.0% | |
| TCTAAATGGAAGCCTGTTAC+AGG | - | tig0040276:5332-5351 | Msa1459490:intron | 40.0% | |
| ACACGGGCAATGTATCAATA+CGG | - | tig0040276:5445-5464 | Msa1459490:intron | 40.0% | |
| CATCATTGTGTTCTCCAACT+TGG | + | tig0040276:5769-5788 | Msa1459490:intergenic | 40.0% | |
| AGTTGGAGAACACAATGATG+TGG | - | tig0040276:5769-5788 | Msa1459490:five_prime_UTR | 40.0% | |
| GAACACAATGATGTGGAGAA+AGG | - | tig0040276:5776-5795 | Msa1459490:five_prime_UTR | 40.0% | |
| AATGATGTGGAGAAAGGAGA+AGG | - | tig0040276:5782-5801 | Msa1459490:five_prime_UTR | 40.0% | |
| ATGATGTGGAGAAAGGAGAA+GGG | - | tig0040276:5783-5802 | Msa1459490:five_prime_UTR | 40.0% | |
| GATGTCTGATAACAAGGGTG+TGG | + | tig0040276:2688-2707 | Msa1459490:intergenic | 45.0% | |
| CCAGAAGCCCTTAAAATCTC+TGG | + | tig0040276:3625-3644 | Msa1459490:intergenic | 45.0% | |
| !! | CCAGAGATTTTAAGGGCTTC+TGG | - | tig0040276:3622-3641 | Msa1459490:CDS | 45.0% |
| ! | TTAAGGGCTTCTGGAAAGAG+TGG | - | tig0040276:3631-3650 | Msa1459490:intron | 45.0% |
| !! | AGTGGATTGATGCAGAACCA+AGG | - | tig0040276:3649-3668 | Msa1459490:intron | 45.0% |
| ! | GTGGATTGATGCAGAACCAA+GGG | - | tig0040276:3650-3669 | Msa1459490:intron | 45.0% |
| TAGGCTTGACACTAAACCCT+TGG | + | tig0040276:3669-3688 | Msa1459490:intergenic | 45.0% | |
| CGACACTAACACGTAGACAT+CGG | - | tig0040276:3794-3813 | Msa1459490:intron | 45.0% | |
| CTTACATCAGGGGCTAAATG+TGG | - | tig0040276:4098-4117 | Msa1459490:intron | 45.0% | |
| ATCAGGGGCTAAATGTGGAT+TGG | - | tig0040276:4103-4122 | Msa1459490:intron | 45.0% | |
| TGTGAAGAAGATGTTGCGCT+TGG | - | tig0040276:4158-4177 | Msa1459490:intron | 45.0% | |
| AACTTTGTTGGGAGGCTTCT+TGG | - | tig0040276:4397-4416 | Msa1459490:intron | 45.0% | |
| GCTTCAACGAATTACCCCTT+GGG | + | tig0040276:4423-4442 | Msa1459490:intergenic | 45.0% | |
| TAATTCGTTGAAGCGAGTGG+AGG | - | tig0040276:4429-4448 | Msa1459490:intron | 45.0% | |
| GGTTGCCGTGTATTTATCAG+AGG | - | tig0040276:4460-4479 | Msa1459490:intron | 45.0% | |
| ! | ACGTTCAACAGCGTTGAACT+TGG | - | tig0040276:4592-4611 | Msa1459490:intron | 45.0% |
| GCACTTCCACCTTACGAATT+CGG | + | tig0040276:4685-4704 | Msa1459490:intergenic | 45.0% | |
| CTAAAGGAAGAGTTGCTGAG+GGG | - | tig0040276:4829-4848 | Msa1459490:CDS | 45.0% | |
| GCCTCAATCAAAATGTGCAG+TGG | + | tig0040276:4883-4902 | Msa1459490:intergenic | 45.0% | |
| AAGAGGACTTGGATTTCCTG+TGG | - | tig0040276:5126-5145 | Msa1459490:intron | 45.0% | |
| GACTTGGATTTCCTGTGGTA+AGG | - | tig0040276:5131-5150 | Msa1459490:intron | 45.0% | |
| ATCACACAGTCAAGTGAGCT+CGG | - | tig0040276:5165-5184 | Msa1459490:intron | 45.0% | |
| GGCTATTGAACGAAGATCAG+AGG | - | tig0040276:5186-5205 | Msa1459490:intron | 45.0% | |
| TGATGTGGAGAAAGGAGAAG+GGG | - | tig0040276:5784-5803 | Msa1459490:five_prime_UTR | 45.0% | |
| TTTCCTCACCAGGAACAGCA+AGG | - | tig0040276:2814-2833 | Msa1459490:CDS | 50.0% | |
| TTCCTCACCAGGAACAGCAA+GGG | - | tig0040276:2815-2834 | Msa1459490:CDS | 50.0% | |
| !! | GAATTAGCCCTTGCTGTTCC+TGG | + | tig0040276:2825-2844 | Msa1459490:intergenic | 50.0% |
| GTGTCGTGTCTGGTGTGTAT+TGG | + | tig0040276:3780-3799 | Msa1459490:intergenic | 50.0% | |
| CTACGTGTTAGTGTCGTGTC+TGG | + | tig0040276:3790-3809 | Msa1459490:intergenic | 50.0% | |
| ! | TTAAAGGCGTGTCTGGTCTC+TGG | + | tig0040276:3855-3874 | Msa1459490:intergenic | 50.0% |
| CGCTTCAACGAATTACCCCT+TGG | + | tig0040276:4424-4443 | Msa1459490:intergenic | 50.0% | |
| GGGTAATTCGTTGAAGCGAG+TGG | - | tig0040276:4426-4445 | Msa1459490:intron | 50.0% | |
| CGAAGAGCTACTCAAACCTG+TGG | - | tig0040276:4957-4976 | Msa1459490:intron | 50.0% | |
| GAAGAGAGTCCTCAACTGAG+TGG | - | tig0040276:5589-5608 | Msa1459490:intron | 50.0% | |
| GAGACACTACCACTCAGTTG+AGG | + | tig0040276:5601-5620 | Msa1459490:intergenic | 50.0% | |
| AAGCGAGTGGAGGCTACTAC+AGG | - | tig0040276:4439-4458 | Msa1459490:intron | 55.0% | |
| AGGAAGAGTTGCTGAGGGGA+AGG | - | tig0040276:4833-4852 | Msa1459490:CDS | 55.0% | |
| !! | AGCCCTTGCTGTTCCTGGTG+AGG | + | tig0040276:2820-2839 | Msa1459490:intergenic | 60.0% |
| TTGGGAGGCTTCTTGGCCCA+AGG | - | tig0040276:4404-4423 | Msa1459490:intron | 60.0% | |
| TGGGAGGCTTCTTGGCCCAA+GGG | - | tig0040276:4405-4424 | Msa1459490:intron | 60.0% | |
| GGGAGGCTTCTTGGCCCAAG+GGG | - | tig0040276:4406-4425 | Msa1459490:intron | 65.0% | |
| GAGTTGCTGAGGGGAAGGCC+AGG | - | tig0040276:4838-4857 | Msa1459490:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0040276 | gene | 2474 | 6006 | 2474 | ID=Msa1459490;Name=Msa1459490 |
| tig0040276 | mRNA | 2474 | 6006 | 2474 | ID=Msa1459490-mRNA-1;Parent=Msa1459490;Name=Msa1459490-mRNA-1;_AED=0.14;_eAED=0.14;_QI=315|1|1|1|1|1|7|337|272 |
| tig0040276 | exon | 2474 | 2960 | 2474 | ID=Msa1459490-mRNA-1:exon:22279;Parent=Msa1459490-mRNA-1 |
| tig0040276 | exon | 3502 | 3645 | 3502 | ID=Msa1459490-mRNA-1:exon:22278;Parent=Msa1459490-mRNA-1 |
| tig0040276 | exon | 3970 | 4086 | 3970 | ID=Msa1459490-mRNA-1:exon:22277;Parent=Msa1459490-mRNA-1 |
| tig0040276 | exon | 4274 | 4372 | 4274 | ID=Msa1459490-mRNA-1:exon:22276;Parent=Msa1459490-mRNA-1 |
| tig0040276 | exon | 4730 | 4854 | 4730 | ID=Msa1459490-mRNA-1:exon:22275;Parent=Msa1459490-mRNA-1 |
| tig0040276 | exon | 5218 | 5306 | 5218 | ID=Msa1459490-mRNA-1:exon:22274;Parent=Msa1459490-mRNA-1 |
| tig0040276 | exon | 5597 | 6006 | 5597 | ID=Msa1459490-mRNA-1:exon:22273;Parent=Msa1459490-mRNA-1 |
| tig0040276 | five_prime_UTR | 5692 | 6006 | 5692 | ID=Msa1459490-mRNA-1:five_prime_utr;Parent=Msa1459490-mRNA-1 |
| tig0040276 | CDS | 5597 | 5691 | 5597 | ID=Msa1459490-mRNA-1:cds;Parent=Msa1459490-mRNA-1 |
| tig0040276 | CDS | 5218 | 5306 | 5218 | ID=Msa1459490-mRNA-1:cds;Parent=Msa1459490-mRNA-1 |
| tig0040276 | CDS | 4730 | 4854 | 4730 | ID=Msa1459490-mRNA-1:cds;Parent=Msa1459490-mRNA-1 |
| tig0040276 | CDS | 4274 | 4372 | 4274 | ID=Msa1459490-mRNA-1:cds;Parent=Msa1459490-mRNA-1 |
| tig0040276 | CDS | 3970 | 4086 | 3970 | ID=Msa1459490-mRNA-1:cds;Parent=Msa1459490-mRNA-1 |
| tig0040276 | CDS | 3502 | 3645 | 3502 | ID=Msa1459490-mRNA-1:cds;Parent=Msa1459490-mRNA-1 |
| tig0040276 | CDS | 2811 | 2960 | 2811 | ID=Msa1459490-mRNA-1:cds;Parent=Msa1459490-mRNA-1 |
| tig0040276 | three_prime_UTR | 2474 | 2810 | 2474 | ID=Msa1459490-mRNA-1:three_prime_utr;Parent=Msa1459490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
