Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446250 | sp|Q9ZVI3|QKIL3_ARATH | 63.574 | 291 | 78 | 9 | 1 | 270 | 1 | 284 | 1.59e-112 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446250 | G7K5T8 | 95.018 | 281 | 5 | 1 | 1 | 272 | 1 | 281 | 0.0 | 546 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1446250 | Msa1459490 | 0.857929 | 1.167105e-62 | -8.615850e-47 |
| Msa0650190 | Msa1446250 | 0.801532 | 8.612261e-49 | -8.615850e-47 |
| Msa0735660 | Msa1446250 | 0.806095 | 9.713541e-50 | -8.615850e-47 |
| Msa0767750 | Msa1446250 | 0.804917 | 1.715752e-49 | -8.615850e-47 |
| Msa0767810 | Msa1446250 | 0.803157 | 3.984911e-49 | -8.615850e-47 |
| Msa0769980 | Msa1446250 | 0.801439 | 8.998896e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446250 | MtrunA17_Chr5g0432901 | 95.018 | 281 | 5 | 1 | 1 | 272 | 1 | 281 | 0.0 | 546 |
| Msa1446250 | MtrunA17_Chr3g0108401 | 77.186 | 263 | 45 | 4 | 24 | 272 | 1 | 262 | 1.35e-143 | 403 |
| Msa1446250 | MtrunA17_Chr7g0245301 | 66.202 | 287 | 70 | 7 | 1 | 269 | 1 | 278 | 1.31e-121 | 348 |
| Msa1446250 | MtrunA17_Chr8g0334451 | 68.231 | 277 | 72 | 6 | 3 | 270 | 5 | 274 | 7.65e-121 | 346 |
| Msa1446250 | MtrunA17_Chr3g0080071 | 52.727 | 275 | 113 | 3 | 10 | 270 | 20 | 291 | 8.97e-89 | 265 |
| Msa1446250 | MtrunA17_Chr2g0276961 | 50.189 | 265 | 109 | 6 | 28 | 270 | 47 | 310 | 5.38e-69 | 216 |
| Msa1446250 | MtrunA17_Chr7g0267531 | 69.412 | 85 | 16 | 2 | 85 | 163 | 1 | 81 | 3.45e-33 | 116 |
| Msa1446250 | MtrunA17_Chr4g0018581 | 44.800 | 125 | 59 | 4 | 126 | 248 | 217 | 333 | 8.59e-25 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1446250 | AT2G38610.2 | 63.574 | 291 | 78 | 9 | 1 | 270 | 1 | 284 | 1.62e-113 | 328 |
| Msa1446250 | AT2G38610.1 | 63.574 | 291 | 78 | 9 | 1 | 270 | 1 | 284 | 1.62e-113 | 328 |
| Msa1446250 | AT3G08620.1 | 61.111 | 288 | 87 | 6 | 1 | 270 | 1 | 281 | 1.21e-112 | 326 |
| Msa1446250 | AT3G08620.2 | 61.667 | 240 | 70 | 4 | 49 | 270 | 1 | 236 | 6.60e-95 | 279 |
| Msa1446250 | AT5G56140.1 | 51.228 | 285 | 120 | 7 | 5 | 272 | 32 | 314 | 6.40e-87 | 262 |
| Msa1446250 | AT4G26480.3 | 50.890 | 281 | 121 | 6 | 5 | 270 | 28 | 306 | 1.41e-84 | 256 |
| Msa1446250 | AT4G26480.1 | 50.890 | 281 | 121 | 6 | 5 | 270 | 28 | 306 | 1.41e-84 | 256 |
| Msa1446250 | AT1G09660.1 | 51.938 | 258 | 101 | 3 | 33 | 271 | 44 | 297 | 5.14e-80 | 243 |
| Msa1446250 | AT1G09660.3 | 51.938 | 258 | 101 | 3 | 33 | 271 | 44 | 297 | 5.14e-80 | 243 |
| Msa1446250 | AT4G26480.2 | 53.778 | 225 | 87 | 5 | 59 | 270 | 1 | 221 | 3.86e-74 | 226 |
| Msa1446250 | AT1G09660.2 | 50.242 | 207 | 90 | 1 | 33 | 226 | 44 | 250 | 7.82e-62 | 196 |
| Msa1446250 | AT5G51300.1 | 44.800 | 125 | 59 | 3 | 126 | 248 | 244 | 360 | 3.49e-24 | 102 |
| Msa1446250 | AT5G51300.2 | 44.800 | 125 | 59 | 3 | 126 | 248 | 244 | 360 | 3.49e-24 | 102 |
| Msa1446250 | AT5G51300.3 | 44.800 | 125 | 59 | 3 | 126 | 248 | 244 | 360 | 3.49e-24 | 102 |
Find 79 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTCAATGTTGTTGATTTA+AGG | 0.084192 | tig0031297:+9120 | Msa1446250:CDS |
| AACTTTGTTGGGAGGCTTCT+TGG | 0.164659 | tig0031297:+8606 | Msa1446250:CDS |
| TTGCTTCTCATGTTTATATT+TGG | 0.166777 | tig0031297:-7057 | Msa1446250:intergenic |
| ATAGAGAGAGACACACTTTA+AGG | 0.180017 | tig0031297:+6719 | Msa1446250:five_prime_UTR |
| GTGATTCTATGTTTCTTAAC+AGG | 0.262166 | tig0031297:+6863 | Msa1446250:five_prime_UTR |
| GAAAGACTATTGGTCAGTTT+TGG | 0.283012 | tig0031297:-9862 | Msa1446250:intergenic |
| GAATTAGCCCTTGCTGTTCC+TGG | 0.348426 | tig0031297:-7033 | Msa1446250:intergenic |
| TACTAATCTACTTACATATA+AGG | 0.350855 | tig0031297:+6754 | Msa1446250:five_prime_UTR |
| TTGGGAGGCTTCTTGGCCCA+AGG | 0.368655 | tig0031297:+8613 | Msa1446250:CDS |
| ATTTAAGAGTCTAGTGCATA+AGG | 0.401174 | tig0031297:-7445 | Msa1446250:intergenic |
| ATCATTTCATTAGAGGTGAA+TGG | 0.424912 | tig0031297:-9831 | Msa1446250:intergenic |
| CGCTTCAACGAATTACCCCT+TGG | 0.431671 | tig0031297:-8630 | Msa1446250:intergenic |
| TTAATGTAGAGAAAGACTAT+TGG | 0.433629 | tig0031297:-9872 | Msa1446250:intergenic |
| TGGGAGGCTTCTTGGCCCAA+GGG | 0.460083 | tig0031297:+8614 | Msa1446250:CDS |
| GACACTACATCAAGTTTCAC+AGG | 0.462265 | tig0031297:+7915 | Msa1446250:CDS |
| TCATTCAAGTGCTCAAATCC+TGG | 0.465607 | tig0031297:-9065 | Msa1446250:intergenic |
| TGCACTAGACTCTTAAATCA+AGG | 0.470726 | tig0031297:+7450 | Msa1446250:CDS |
| CTACCAACTCAGTTAAGTAT+TGG | 0.476363 | tig0031297:-7383 | Msa1446250:intergenic |
| CATCATTGTGTTCTCCAACT+TGG | 0.480524 | tig0031297:-9975 | Msa1446250:intergenic |
| TCAAATATCTTACAGTTGGA+TGG | 0.482767 | tig0031297:-8406 | Msa1446250:intergenic |
| TTCAATAAAAGACTTCGATA+AGG | 0.496581 | tig0031297:+8698 | Msa1446250:CDS |
| AAAAGAGATGTCTGAGAACA+AGG | 0.499405 | tig0031297:-6902 | Msa1446250:intergenic |
| TTCAGTTCAACTTTGTTGGG+AGG | 0.499629 | tig0031297:+8598 | Msa1446250:intron |
| CTTAAATCAACAACATTGAC+AGG | 0.499752 | tig0031297:-9119 | Msa1446250:intergenic |
| TTTAAGAGTCTAGTGCATAA+GGG | 0.500486 | tig0031297:-7444 | Msa1446250:intergenic |
| CGTGTATTTATCAGAGGGAA+AGG | 0.513765 | tig0031297:+8675 | Msa1446250:CDS |
| GAGTTGCTGAGGGGAAGGCC+AGG | 0.515410 | tig0031297:+9047 | Msa1446250:CDS |
| AAGCGAGTGGAGGCTACTAC+AGG | 0.516719 | tig0031297:+8648 | Msa1446250:CDS |
| GAACACAATGATGTGGAGAA+AGG | 0.520536 | tig0031297:+9985 | Msa1446250:three_prime_UTR |
| ATTGATAAAAGAGAAGGTAG+TGG | 0.525553 | tig0031297:-6821 | Msa1446250:intergenic |
| AAGGTAGTGGATGAAAAGAA+AGG | 0.533639 | tig0031297:-6808 | Msa1446250:intergenic |
| CTTGATGTAGTGTCTAAAGA+AGG | 0.537119 | tig0031297:-7906 | Msa1446250:intergenic |
| ATCAGGGGCTAAATGTGGAT+TGG | 0.537326 | tig0031297:+8312 | Msa1446250:intron |
| TAGGCTTGACACTAAACCCT+TGG | 0.537437 | tig0031297:-7875 | Msa1446250:intergenic |
| AGAGTATATAGAAAATTCAA+AGG | 0.538811 | tig0031297:-6939 | Msa1446250:intergenic |
| AGGAAGAGTTGCTGAGGGGA+AGG | 0.539626 | tig0031297:+9042 | Msa1446250:intron |
| AAGGGTAAGACTTGCATGAA+AGG | 0.543152 | tig0031297:-7426 | Msa1446250:intergenic |
| TTGATGATATAATGCCAAGT+TGG | 0.543259 | tig0031297:+9961 | Msa1446250:three_prime_UTR |
| GTAGCAGAATATCAGAAGCT+TGG | 0.544343 | tig0031297:+7402 | Msa1446250:CDS |
| TTAAGGGCTTCTGGAAAGAG+TGG | 0.550881 | tig0031297:+7840 | Msa1446250:CDS |
| TGTGAAGAAGATGTTGCGCT+TGG | 0.554183 | tig0031297:+8367 | Msa1446250:CDS |
| GAGTATATAGAAAATTCAAA+GGG | 0.563198 | tig0031297:-6938 | Msa1446250:intergenic |
| TAGCCAATACTTAACTGAGT+TGG | 0.564535 | tig0031297:+7380 | Msa1446250:intron |
| GCTTCAACGAATTACCCCTT+GGG | 0.565692 | tig0031297:-8629 | Msa1446250:intergenic |
| ATCTAAAGGAAGAGTTGCTG+AGG | 0.572490 | tig0031297:+9036 | Msa1446250:intron |
| ATGTGAGAATTTGAGACTGC+TGG | 0.575507 | tig0031297:-8344 | Msa1446250:intergenic |
| CTTACATCAGGGGCTAAATG+TGG | 0.578036 | tig0031297:+8307 | Msa1446250:intron |
| GGGTAATTCGTTGAAGCGAG+TGG | 0.578269 | tig0031297:+8635 | Msa1446250:CDS |
| AGCCCTTGCTGTTCCTGGTG+AGG | 0.578872 | tig0031297:-7028 | Msa1446250:intergenic |
| GGGAGGCTTCTTGGCCCAAG+GGG | 0.580940 | tig0031297:+8615 | Msa1446250:CDS |
| AATGATGTGGAGAAAGGAGA+AGG | 0.583058 | tig0031297:+9991 | Msa1446250:three_prime_UTR |
| AAAATAGAAATATAGATAGA+GGG | 0.586267 | tig0031297:-6780 | Msa1446250:intergenic |
| ATGATGTGGAGAAAGGAGAA+GGG | 0.588856 | tig0031297:+9992 | Msa1446250:three_prime_UTR |
| GTGGATTGATGCAGAACCAA+GGG | 0.591733 | tig0031297:+7859 | Msa1446250:CDS |
| GGTTGCCGTGTATTTATCAG+AGG | 0.595636 | tig0031297:+8669 | Msa1446250:CDS |
| CTAAATGTGGATTGGCAAAG+AGG | 0.599596 | tig0031297:+8320 | Msa1446250:CDS |
| TCTAAAGAAGGCATAAGACT+AGG | 0.599631 | tig0031297:-7894 | Msa1446250:intergenic |
| TGTTTGATTGATAAAAGAGA+AGG | 0.603229 | tig0031297:-6827 | Msa1446250:intergenic |
| GATGTCTGAGAACAAGGGTG+TGG | 0.604434 | tig0031297:-6896 | Msa1446250:intergenic |
| TGATGTGGAGAAAGGAGAAG+GGG | 0.609543 | tig0031297:+9993 | Msa1446250:three_prime_UTR |
| TCTAAAGGAAGAGTTGCTGA+GGG | 0.609826 | tig0031297:+9037 | Msa1446250:intron |
| CTTTCCCTCTGATAAATACA+CGG | 0.616803 | tig0031297:-8674 | Msa1446250:intergenic |
| CTACATCAAGTTTCACAGGA+TGG | 0.618603 | tig0031297:+7919 | Msa1446250:CDS |
| ACAGTTGGATGGTTATCATG+AGG | 0.620762 | tig0031297:-8395 | Msa1446250:intergenic |
| TTTCCTCACCAGGAACAGCA+AGG | 0.622680 | tig0031297:+7025 | Msa1446250:CDS |
| TTCCTCACCAGGAACAGCAA+GGG | 0.622720 | tig0031297:+7026 | Msa1446250:CDS |
| AATCACAAGACATTTACAAG+AGG | 0.624320 | tig0031297:+9733 | Msa1446250:CDS |
| GAGACACTACCACTCAGTTG+AGG | 0.628248 | tig0031297:-9807 | Msa1446250:intergenic |
| AGTGGATTGATGCAGAACCA+AGG | 0.632569 | tig0031297:+7858 | Msa1446250:CDS |
| GCCTCAATCAAAATGTGCAG+TGG | 0.633269 | tig0031297:-9089 | Msa1446250:intergenic |
| AACAATCAGATTTCCTCACC+AGG | 0.634098 | tig0031297:+7015 | Msa1446250:CDS |
| GTTGCCGTGTATTTATCAGA+GGG | 0.636330 | tig0031297:+8670 | Msa1446250:CDS |
| AGTTGGAGAACACAATGATG+TGG | 0.636907 | tig0031297:+9978 | Msa1446250:three_prime_UTR |
| TAATCTACTTACATATAAGG+TGG | 0.649861 | tig0031297:+6757 | Msa1446250:five_prime_UTR |
| AAAGAGATGTCTGAGAACAA+GGG | 0.652516 | tig0031297:-6901 | Msa1446250:intergenic |
| GAAGAGAGTCCTCAACTGAG+TGG | 0.680778 | tig0031297:+9798 | Msa1446250:CDS |
| TAATTCGTTGAAGCGAGTGG+AGG | 0.684712 | tig0031297:+8638 | Msa1446250:CDS |
| TGAAGAGCTACTCAAACCTG+TGG | 0.709368 | tig0031297:+9166 | Msa1446250:CDS |
| CTAAAGGAAGAGTTGCTGAG+GGG | 0.733546 | tig0031297:+9038 | Msa1446250:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATCCATATATTAAATTT+TGG | + | tig0031297:7483-7502 | Msa1446250:intron | 10.0% |
| !!! | ATTTTATAATTTTTTTCCAA+TGG | - | tig0031297:8120-8139 | Msa1446250:intergenic | 10.0% |
| !! | AAAATAGAAATATAGATAGA+GGG | - | tig0031297:6783-6802 | Msa1446250:intergenic | 15.0% |
| !! | AAAAATAGAAATATAGATAG+AGG | - | tig0031297:6784-6803 | Msa1446250:intergenic | 15.0% |
| !!! | CATATACATATAACTATTTT+TGG | - | tig0031297:7308-7327 | Msa1446250:intergenic | 15.0% |
| !! | CAAAACCAAAATTTAATATA+TGG | - | tig0031297:7491-7510 | Msa1446250:intergenic | 15.0% |
| !! | TCTGTCAAATATATATATAT+GGG | - | tig0031297:7683-7702 | Msa1446250:intergenic | 15.0% |
| !! | TTCTGTCAAATATATATATA+TGG | - | tig0031297:7684-7703 | Msa1446250:intergenic | 15.0% |
| !!! | CATATTTAACAATTTTTAGT+TGG | + | tig0031297:7757-7776 | Msa1446250:intron | 15.0% |
| !! | TAGCAAATTTAATGATTAAA+GGG | - | tig0031297:8271-8290 | Msa1446250:intergenic | 15.0% |
| !! | TTAGCAAATTTAATGATTAA+AGG | - | tig0031297:8272-8291 | Msa1446250:intergenic | 15.0% |
| !! | ATGTATGATCATATTAAAAA+TGG | - | tig0031297:8446-8465 | Msa1446250:intergenic | 15.0% |
| !!! | TACTTTTATTATATTTTGAC+AGG | + | tig0031297:10094-10113 | Msa1446250:three_prime_UTR | 15.0% |
| !! | TACTAATCTACTTACATATA+AGG | + | tig0031297:6754-6773 | Msa1446250:five_prime_UTR | 20.0% |
| !! | GAGTATATAGAAAATTCAAA+GGG | - | tig0031297:6941-6960 | Msa1446250:intergenic | 20.0% |
| !! | AGAGTATATAGAAAATTCAA+AGG | - | tig0031297:6942-6961 | Msa1446250:intergenic | 20.0% |
| !! | TCAACACAAAACAAAAAAAA+AGG | - | tig0031297:6976-6995 | Msa1446250:intergenic | 20.0% |
| !!! | TGATGAGTTTAATTAACTTT+TGG | + | tig0031297:7331-7350 | Msa1446250:intron | 20.0% |
| !! | GATTCAAGTAAAATAAAAAG+TGG | - | tig0031297:7532-7551 | Msa1446250:intergenic | 20.0% |
| !!! | CTTTTTATTTTACTTGAATC+AGG | + | tig0031297:7532-7551 | Msa1446250:intron | 20.0% |
| !!! | TCTCATTTTTTTATGTTATG+AGG | + | tig0031297:7596-7615 | Msa1446250:intron | 20.0% |
| !!! | TTTATTACCAGAGATTTTAA+GGG | + | tig0031297:7824-7843 | Msa1446250:intron | 20.0% |
| !!! | ACACCTTTAATTTGAATTAA+AGG | + | tig0031297:8074-8093 | Msa1446250:intron | 20.0% |
| !! | ACACCTTTAATTCAAATTAA+AGG | - | tig0031297:8080-8099 | Msa1446250:intergenic | 20.0% |
| !!! | ACATTTTAATGTTAAACCAT+TGG | + | tig0031297:8101-8120 | Msa1446250:intron | 20.0% |
| !! | CATGATAGAAATAAATGTTA+TGG | - | tig0031297:8192-8211 | Msa1446250:intergenic | 20.0% |
| !! | TGAATGAAAATGAAATAGAA+GGG | - | tig0031297:8226-8245 | Msa1446250:intergenic | 20.0% |
| !! | ATGAATGAAAATGAAATAGA+AGG | - | tig0031297:8227-8246 | Msa1446250:intergenic | 20.0% |
| !!! | ATATTTTGATTTTACCAAAC+CGG | + | tig0031297:9422-9441 | Msa1446250:intron | 20.0% |
| !! | ATATAGTCAAGATATCAATA+CGG | + | tig0031297:9617-9636 | Msa1446250:intron | 20.0% |
| !!! | TCTTTTTATCATTTCATTAG+AGG | - | tig0031297:9841-9860 | Msa1446250:intergenic | 20.0% |
| ! | TAATCTACTTACATATAAGG+TGG | + | tig0031297:6757-6776 | Msa1446250:five_prime_UTR | 25.0% |
| ! | TGTTTGATTGATAAAAGAGA+AGG | - | tig0031297:6830-6849 | Msa1446250:intergenic | 25.0% |
| ! | TTGCTTCTCATGTTTATATT+TGG | - | tig0031297:7060-7079 | Msa1446250:intergenic | 25.0% |
| !! | ACTGAGTTTTCTTAATAACT+TGG | + | tig0031297:7566-7585 | Msa1446250:intron | 25.0% |
| !! | CTTTATTACCAGAGATTTTA+AGG | + | tig0031297:7823-7842 | Msa1446250:intron | 25.0% |
| ! | TAAAATAATATCTGATCCCT+TGG | + | tig0031297:8134-8153 | Msa1446250:intron | 25.0% |
| ! | GAATGAAAATGAAATAGAAG+GGG | - | tig0031297:8225-8244 | Msa1446250:intergenic | 25.0% |
| ! | TGTTTCAAATATCTTACAGT+TGG | - | tig0031297:8413-8432 | Msa1446250:intergenic | 25.0% |
| ! | TTTATTTAGGAATTCACATG+AGG | + | tig0031297:8568-8587 | Msa1446250:intron | 25.0% |
| !! | TATTTTCAGTTCAACTTTGT+TGG | + | tig0031297:8594-8613 | Msa1446250:intron | 25.0% |
| !! | ATTTTCAGTTCAACTTTGTT+GGG | + | tig0031297:8595-8614 | Msa1446250:intron | 25.0% |
| ! | TTCAATAAAAGACTTCGATA+AGG | + | tig0031297:8698-8717 | Msa1446250:CDS | 25.0% |
| !!! | CAAATTAGGTTTTTTTCAGT+TGG | - | tig0031297:8752-8771 | Msa1446250:intergenic | 25.0% |
| ! | TGTGTAGATAATATGATGAA+TGG | + | tig0031297:8824-8843 | Msa1446250:intron | 25.0% |
| ! | ATAGGATTAGATTTGAAAAC+AGG | - | tig0031297:8929-8948 | Msa1446250:intergenic | 25.0% |
| ! | TATGAAAAGAAGGTTTGAAT+AGG | - | tig0031297:8947-8966 | Msa1446250:intergenic | 25.0% |
| ! | AACAAACACATATGAAAAGA+AGG | - | tig0031297:8957-8976 | Msa1446250:intergenic | 25.0% |
| ! | CCTTTAGATTATAACAAAGT+AGG | - | tig0031297:9025-9044 | Msa1446250:intergenic | 25.0% |
| !! | CCTACTTTGTTATAATCTAA+AGG | + | tig0031297:9022-9041 | Msa1446250:intron | 25.0% |
| ! | TTGAAAAACATAAATACCAC+AGG | - | tig0031297:9185-9204 | Msa1446250:intergenic | 25.0% |
| ! | CATGAAAATGCATGTTATAA+TGG | - | tig0031297:9274-9293 | Msa1446250:intergenic | 25.0% |
| !!! | TTCAAGTTACATTTTAAAGC+CGG | - | tig0031297:9444-9463 | Msa1446250:intergenic | 25.0% |
| ! | CACAAAAGAATAATAAAGGA+TGG | - | tig0031297:9706-9725 | Msa1446250:intergenic | 25.0% |
| ! | TTAATGTAGAGAAAGACTAT+TGG | - | tig0031297:9875-9894 | Msa1446250:intergenic | 25.0% |
| !!! | TATTTTGACAGGTTTGTTAA+TGG | + | tig0031297:10105-10124 | Msa1446250:three_prime_UTR | 25.0% |
| ATTGATAAAAGAGAAGGTAG+TGG | - | tig0031297:6824-6843 | Msa1446250:intergenic | 30.0% | |
| GTGATTCTATGTTTCTTAAC+AGG | + | tig0031297:6863-6882 | Msa1446250:five_prime_UTR | 30.0% | |
| ! | GTTTCTTAACAGGATTTTTG+AGG | + | tig0031297:6873-6892 | Msa1446250:five_prime_UTR | 30.0% |
| ! | TTTTGTGTTGAATTGATGTC+TGG | + | tig0031297:6985-7004 | Msa1446250:exon | 30.0% |
| GGTTAAGTCGAATTTATTGT+CGG | + | tig0031297:7224-7243 | Msa1446250:intron | 30.0% | |
| TTTAAGAGTCTAGTGCATAA+GGG | - | tig0031297:7447-7466 | Msa1446250:intergenic | 30.0% | |
| ATTTAAGAGTCTAGTGCATA+AGG | - | tig0031297:7448-7467 | Msa1446250:intergenic | 30.0% | |
| TATACGAACAGACATAAAGT+TGG | - | tig0031297:7790-7809 | Msa1446250:intergenic | 30.0% | |
| ! | ATTCAAATTAAAGGTGTGTC+TGG | - | tig0031297:8071-8090 | Msa1446250:intergenic | 30.0% |
| TTACAAAAAATGCAGACCAA+GGG | - | tig0031297:8153-8172 | Msa1446250:intergenic | 30.0% | |
| TTTACAAAAAATGCAGACCA+AGG | - | tig0031297:8154-8173 | Msa1446250:intergenic | 30.0% | |
| ATGAAATAGAAGGGGAATAT+TGG | - | tig0031297:8217-8236 | Msa1446250:intergenic | 30.0% | |
| ATTAAGTCCAATCTTACATC+AGG | + | tig0031297:8295-8314 | Msa1446250:intron | 30.0% | |
| TTAAGTCCAATCTTACATCA+GGG | + | tig0031297:8296-8315 | Msa1446250:intron | 30.0% | |
| TCAAATATCTTACAGTTGGA+TGG | - | tig0031297:8409-8428 | Msa1446250:intergenic | 30.0% | |
| !!! | CTCTCACGCTTATTTTATTT+AGG | + | tig0031297:8555-8574 | Msa1446250:intron | 30.0% |
| TAATAGTGTGACAGCAAATT+AGG | - | tig0031297:8766-8785 | Msa1446250:intergenic | 30.0% | |
| ATCTTAAAACCGAATTCGTA+AGG | + | tig0031297:8882-8901 | Msa1446250:intron | 30.0% | |
| TGAAAACAGGTTATAAAGAG+TGG | - | tig0031297:8916-8935 | Msa1446250:intergenic | 30.0% | |
| CTTAAATCAACAACATTGAC+AGG | - | tig0031297:9122-9141 | Msa1446250:intergenic | 30.0% | |
| !! | CTGTCAATGTTGTTGATTTA+AGG | + | tig0031297:9120-9139 | Msa1446250:CDS | 30.0% |
| ! | ATAACATGCATTTTCATGCA+AGG | + | tig0031297:9276-9295 | Msa1446250:intron | 30.0% |
| GGAAAGTAAAAGAACAAACT+TGG | - | tig0031297:9307-9326 | Msa1446250:intergenic | 30.0% | |
| !!! | TCCAAGTCATCTTTTAACTT+CGG | - | tig0031297:9328-9347 | Msa1446250:intergenic | 30.0% |
| ! | CGGTTGTAAAATGTTTTACA+CGG | + | tig0031297:9637-9656 | Msa1446250:intron | 30.0% |
| ! | GGTTGTAAAATGTTTTACAC+GGG | + | tig0031297:9638-9657 | Msa1446250:intron | 30.0% |
| CCTGCACAAAAGAATAATAA+AGG | - | tig0031297:9710-9729 | Msa1446250:intergenic | 30.0% | |
| ! | CCTTTATTATTCTTTTGTGC+AGG | + | tig0031297:9707-9726 | Msa1446250:intron | 30.0% |
| AATCACAAGACATTTACAAG+AGG | + | tig0031297:9733-9752 | Msa1446250:CDS | 30.0% | |
| ATCATTTCATTAGAGGTGAA+TGG | - | tig0031297:9834-9853 | Msa1446250:intergenic | 30.0% | |
| ! | TTGATGATATAATGCCAAGT+TGG | + | tig0031297:9961-9980 | Msa1446250:three_prime_UTR | 30.0% |
| ATAGAGAGAGACACACTTTA+AGG | + | tig0031297:6719-6738 | Msa1446250:five_prime_UTR | 35.0% | |
| !! | AAGGTAGTGGATGAAAAGAA+AGG | - | tig0031297:6811-6830 | Msa1446250:intergenic | 35.0% |
| AAAGAGATGTCTGAGAACAA+GGG | - | tig0031297:6904-6923 | Msa1446250:intergenic | 35.0% | |
| AAAAGAGATGTCTGAGAACA+AGG | - | tig0031297:6905-6924 | Msa1446250:intergenic | 35.0% | |
| !! | GAAGCAATTTTGATGCTGAT+AGG | + | tig0031297:7073-7092 | Msa1446250:CDS | 35.0% |
| ACCAAGCAATTGAACTCAAA+TGG | + | tig0031297:7203-7222 | Msa1446250:intron | 35.0% | |
| ! | ACCATTTGAGTTCAATTGCT+TGG | - | tig0031297:7207-7226 | Msa1446250:intergenic | 35.0% |
| AGAAGATGACTCTAGTATTC+CGG | - | tig0031297:7265-7284 | Msa1446250:intergenic | 35.0% | |
| TAGCCAATACTTAACTGAGT+TGG | + | tig0031297:7380-7399 | Msa1446250:intron | 35.0% | |
| CTACCAACTCAGTTAAGTAT+TGG | - | tig0031297:7386-7405 | Msa1446250:intergenic | 35.0% | |
| TGCACTAGACTCTTAAATCA+AGG | + | tig0031297:7450-7469 | Msa1446250:CDS | 35.0% | |
| CTAGACTCTTAAATCAAGGT+TGG | + | tig0031297:7454-7473 | Msa1446250:intron | 35.0% | |
| ! | TCTAAAGAAGGCATAAGACT+AGG | - | tig0031297:7897-7916 | Msa1446250:intergenic | 35.0% |
| CTTGATGTAGTGTCTAAAGA+AGG | - | tig0031297:7909-7928 | Msa1446250:intergenic | 35.0% | |
| GAATGTAATCGTGTTAGTGT+CGG | + | tig0031297:8035-8054 | Msa1446250:intron | 35.0% | |
| TAAGTCCAATCTTACATCAG+GGG | + | tig0031297:8297-8316 | Msa1446250:intron | 35.0% | |
| CTTTCCCTCTGATAAATACA+CGG | - | tig0031297:8677-8696 | Msa1446250:intergenic | 35.0% | |
| TGGTCTAAATTGATAGACTC+TGG | + | tig0031297:8844-8863 | Msa1446250:intron | 35.0% | |
| TTAAAACCGAATTCGTAAGG+TGG | + | tig0031297:8885-8904 | Msa1446250:intron | 35.0% | |
| !! | TATAATGGACAGTGTGTCAA+GGG | - | tig0031297:9259-9278 | Msa1446250:intergenic | 35.0% |
| !! | TTATAATGGACAGTGTGTCA+AGG | - | tig0031297:9260-9279 | Msa1446250:intergenic | 35.0% |
| TCCGAAGTTAAAAGATGACT+TGG | + | tig0031297:9324-9343 | Msa1446250:intron | 35.0% | |
| !!! | GTTACATTTTAAAGCCGGTT+TGG | - | tig0031297:9439-9458 | Msa1446250:intergenic | 35.0% |
| AGTCATGTAGTTGTAGATCT+CGG | - | tig0031297:9496-9515 | Msa1446250:intergenic | 35.0% | |
| GAGAATCCATTTCCTCTAAA+TGG | + | tig0031297:9527-9546 | Msa1446250:intron | 35.0% | |
| ! | ACAATGAGTTTTCCTGTAAC+AGG | - | tig0031297:9556-9575 | Msa1446250:intergenic | 35.0% |
| ! | GAAAGACTATTGGTCAGTTT+TGG | - | tig0031297:9865-9884 | Msa1446250:intergenic | 35.0% |
| AACAATCAGATTTCCTCACC+AGG | + | tig0031297:7015-7034 | Msa1446250:CDS | 40.0% | |
| GTAGCAGAATATCAGAAGCT+TGG | + | tig0031297:7402-7421 | Msa1446250:CDS | 40.0% | |
| AAGGGTAAGACTTGCATGAA+AGG | - | tig0031297:7429-7448 | Msa1446250:intergenic | 40.0% | |
| GACACTACATCAAGTTTCAC+AGG | + | tig0031297:7915-7934 | Msa1446250:CDS | 40.0% | |
| CTACATCAAGTTTCACAGGA+TGG | + | tig0031297:7919-7938 | Msa1446250:CDS | 40.0% | |
| TTTAGCCCCTGATGTAAGAT+TGG | - | tig0031297:8305-8324 | Msa1446250:intergenic | 40.0% | |
| !! | CTAAATGTGGATTGGCAAAG+AGG | + | tig0031297:8320-8339 | Msa1446250:CDS | 40.0% |
| ! | ATGTGAGAATTTGAGACTGC+TGG | - | tig0031297:8347-8366 | Msa1446250:intergenic | 40.0% |
| ACAGTTGGATGGTTATCATG+AGG | - | tig0031297:8398-8417 | Msa1446250:intergenic | 40.0% | |
| TTCAGTTCAACTTTGTTGGG+AGG | + | tig0031297:8598-8617 | Msa1446250:intron | 40.0% | |
| GTTGCCGTGTATTTATCAGA+GGG | + | tig0031297:8670-8689 | Msa1446250:CDS | 40.0% | |
| CGTGTATTTATCAGAGGGAA+AGG | + | tig0031297:8675-8694 | Msa1446250:CDS | 40.0% | |
| ! | AGGTATTTTCTCTCCCTTAG+TGG | + | tig0031297:8718-8737 | Msa1446250:intron | 40.0% |
| GTTGGAAAACAGTCCACTAA+GGG | - | tig0031297:8734-8753 | Msa1446250:intergenic | 40.0% | |
| AGTTGGAAAACAGTCCACTA+AGG | - | tig0031297:8735-8754 | Msa1446250:intergenic | 40.0% | |
| CAAGCAATATTGTTTGCGCA+AGG | - | tig0031297:8986-9005 | Msa1446250:intergenic | 40.0% | |
| ATCTAAAGGAAGAGTTGCTG+AGG | + | tig0031297:9036-9055 | Msa1446250:intron | 40.0% | |
| TCTAAAGGAAGAGTTGCTGA+GGG | + | tig0031297:9037-9056 | Msa1446250:intron | 40.0% | |
| TCATTCAAGTGCTCAAATCC+TGG | - | tig0031297:9068-9087 | Msa1446250:intergenic | 40.0% | |
| !!! | ACCACTGCACATTTTGATTG+AGG | + | tig0031297:9088-9107 | Msa1446250:CDS | 40.0% |
| ! | AAGATGACTTGGATTTCCTG+TGG | + | tig0031297:9335-9354 | Msa1446250:intron | 40.0% |
| ACTTGGATTTCCTGTGGTAA+GGG | + | tig0031297:9341-9360 | Msa1446250:intron | 40.0% | |
| TGTATACTTTCCCTTACCAC+AGG | - | tig0031297:9354-9373 | Msa1446250:intergenic | 40.0% | |
| AGGCTTCCATTTAGAGGAAA+TGG | - | tig0031297:9536-9555 | Msa1446250:intergenic | 40.0% | |
| TGTAACAGGCTTCCATTTAG+AGG | - | tig0031297:9542-9561 | Msa1446250:intergenic | 40.0% | |
| TCTAAATGGAAGCCTGTTAC+AGG | + | tig0031297:9541-9560 | Msa1446250:intron | 40.0% | |
| ACACGGGCAATGTATCAATA+CGG | + | tig0031297:9654-9673 | Msa1446250:intron | 40.0% | |
| CATCATTGTGTTCTCCAACT+TGG | - | tig0031297:9978-9997 | Msa1446250:intergenic | 40.0% | |
| AGTTGGAGAACACAATGATG+TGG | + | tig0031297:9978-9997 | Msa1446250:three_prime_UTR | 40.0% | |
| GAACACAATGATGTGGAGAA+AGG | + | tig0031297:9985-10004 | Msa1446250:three_prime_UTR | 40.0% | |
| AATGATGTGGAGAAAGGAGA+AGG | + | tig0031297:9991-10010 | Msa1446250:three_prime_UTR | 40.0% | |
| ATGATGTGGAGAAAGGAGAA+GGG | + | tig0031297:9992-10011 | Msa1446250:three_prime_UTR | 40.0% | |
| GTATTCCGGAATTCGTCAGA+AGG | - | tig0031297:7251-7270 | Msa1446250:intergenic | 45.0% | |
| CCAGAAGCCCTTAAAATCTC+TGG | - | tig0031297:7834-7853 | Msa1446250:intergenic | 45.0% | |
| !! | CCAGAGATTTTAAGGGCTTC+TGG | + | tig0031297:7831-7850 | Msa1446250:intron | 45.0% |
| ! | TTAAGGGCTTCTGGAAAGAG+TGG | + | tig0031297:7840-7859 | Msa1446250:CDS | 45.0% |
| !! | AGTGGATTGATGCAGAACCA+AGG | + | tig0031297:7858-7877 | Msa1446250:CDS | 45.0% |
| ! | GTGGATTGATGCAGAACCAA+GGG | + | tig0031297:7859-7878 | Msa1446250:CDS | 45.0% |
| TAGGCTTGACACTAAACCCT+TGG | - | tig0031297:7878-7897 | Msa1446250:intergenic | 45.0% | |
| CGACACTAACACGTAGACAT+CGG | + | tig0031297:8003-8022 | Msa1446250:intron | 45.0% | |
| ! | TTAAAGGTGTGTCTGGTCTC+TGG | - | tig0031297:8064-8083 | Msa1446250:intergenic | 45.0% |
| CTTACATCAGGGGCTAAATG+TGG | + | tig0031297:8307-8326 | Msa1446250:intron | 45.0% | |
| ATCAGGGGCTAAATGTGGAT+TGG | + | tig0031297:8312-8331 | Msa1446250:intron | 45.0% | |
| TGTGAAGAAGATGTTGCGCT+TGG | + | tig0031297:8367-8386 | Msa1446250:CDS | 45.0% | |
| AACTTTGTTGGGAGGCTTCT+TGG | + | tig0031297:8606-8625 | Msa1446250:CDS | 45.0% | |
| GCTTCAACGAATTACCCCTT+GGG | - | tig0031297:8632-8651 | Msa1446250:intergenic | 45.0% | |
| TAATTCGTTGAAGCGAGTGG+AGG | + | tig0031297:8638-8657 | Msa1446250:CDS | 45.0% | |
| GGTTGCCGTGTATTTATCAG+AGG | + | tig0031297:8669-8688 | Msa1446250:CDS | 45.0% | |
| ! | ACGTTCAACAGCGTTGAACT+TGG | + | tig0031297:8801-8820 | Msa1446250:intron | 45.0% |
| GCACTTCCACCTTACGAATT+CGG | - | tig0031297:8894-8913 | Msa1446250:intergenic | 45.0% | |
| CTAAAGGAAGAGTTGCTGAG+GGG | + | tig0031297:9038-9057 | Msa1446250:intron | 45.0% | |
| GCCTCAATCAAAATGTGCAG+TGG | - | tig0031297:9092-9111 | Msa1446250:intergenic | 45.0% | |
| TGAAGAGCTACTCAAACCTG+TGG | + | tig0031297:9166-9185 | Msa1446250:CDS | 45.0% | |
| GACTTGGATTTCCTGTGGTA+AGG | + | tig0031297:9340-9359 | Msa1446250:intron | 45.0% | |
| ATCACACAGTCAAGTGAGCT+CGG | + | tig0031297:9374-9393 | Msa1446250:intron | 45.0% | |
| GGCTATTGAACGAAGATCAG+AGG | + | tig0031297:9395-9414 | Msa1446250:intron | 45.0% | |
| TGATGTGGAGAAAGGAGAAG+GGG | + | tig0031297:9993-10012 | Msa1446250:three_prime_UTR | 45.0% | |
| GATGTCTGAGAACAAGGGTG+TGG | - | tig0031297:6899-6918 | Msa1446250:intergenic | 50.0% | |
| TTTCCTCACCAGGAACAGCA+AGG | + | tig0031297:7025-7044 | Msa1446250:CDS | 50.0% | |
| TTCCTCACCAGGAACAGCAA+GGG | + | tig0031297:7026-7045 | Msa1446250:CDS | 50.0% | |
| !! | GAATTAGCCCTTGCTGTTCC+TGG | - | tig0031297:7036-7055 | Msa1446250:intergenic | 50.0% |
| TCGGACCTTCTGACGAATTC+CGG | + | tig0031297:7243-7262 | Msa1446250:intron | 50.0% | |
| GTGTCGTGTCTGGTGTGTAT+TGG | - | tig0031297:7989-8008 | Msa1446250:intergenic | 50.0% | |
| CTACGTGTTAGTGTCGTGTC+TGG | - | tig0031297:7999-8018 | Msa1446250:intergenic | 50.0% | |
| CGCTTCAACGAATTACCCCT+TGG | - | tig0031297:8633-8652 | Msa1446250:intergenic | 50.0% | |
| GGGTAATTCGTTGAAGCGAG+TGG | + | tig0031297:8635-8654 | Msa1446250:CDS | 50.0% | |
| GAAGAGAGTCCTCAACTGAG+TGG | + | tig0031297:9798-9817 | Msa1446250:CDS | 50.0% | |
| GAGACACTACCACTCAGTTG+AGG | - | tig0031297:9810-9829 | Msa1446250:intergenic | 50.0% | |
| AAGCGAGTGGAGGCTACTAC+AGG | + | tig0031297:8648-8667 | Msa1446250:CDS | 55.0% | |
| AGGAAGAGTTGCTGAGGGGA+AGG | + | tig0031297:9042-9061 | Msa1446250:intron | 55.0% | |
| !! | AGCCCTTGCTGTTCCTGGTG+AGG | - | tig0031297:7031-7050 | Msa1446250:intergenic | 60.0% |
| TTGGGAGGCTTCTTGGCCCA+AGG | + | tig0031297:8613-8632 | Msa1446250:CDS | 60.0% | |
| TGGGAGGCTTCTTGGCCCAA+GGG | + | tig0031297:8614-8633 | Msa1446250:CDS | 60.0% | |
| GGGAGGCTTCTTGGCCCAAG+GGG | + | tig0031297:8615-8634 | Msa1446250:CDS | 65.0% | |
| GAGTTGCTGAGGGGAAGGCC+AGG | + | tig0031297:9047-9066 | Msa1446250:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0031297 | gene | 6685 | 10218 | 6685 | ID=Msa1446250;Name=Msa1446250 |
| tig0031297 | mRNA | 6685 | 10218 | 6685 | ID=Msa1446250-mRNA-1;Parent=Msa1446250;Name=Msa1446250-mRNA-1;_AED=0.14;_eAED=0.14;_QI=315|1|1|1|1|1|7|340|272 |
| tig0031297 | exon | 6685 | 7094 | 6685 | ID=Msa1446250-mRNA-1:exon:15357;Parent=Msa1446250-mRNA-1 |
| tig0031297 | exon | 7383 | 7471 | 7383 | ID=Msa1446250-mRNA-1:exon:15358;Parent=Msa1446250-mRNA-1 |
| tig0031297 | exon | 7835 | 7959 | 7835 | ID=Msa1446250-mRNA-1:exon:15359;Parent=Msa1446250-mRNA-1 |
| tig0031297 | exon | 8317 | 8415 | 8317 | ID=Msa1446250-mRNA-1:exon:15360;Parent=Msa1446250-mRNA-1 |
| tig0031297 | exon | 8603 | 8719 | 8603 | ID=Msa1446250-mRNA-1:exon:15361;Parent=Msa1446250-mRNA-1 |
| tig0031297 | exon | 9044 | 9187 | 9044 | ID=Msa1446250-mRNA-1:exon:15362;Parent=Msa1446250-mRNA-1 |
| tig0031297 | exon | 9729 | 10218 | 9729 | ID=Msa1446250-mRNA-1:exon:15363;Parent=Msa1446250-mRNA-1 |
| tig0031297 | five_prime_UTR | 6685 | 6999 | 6685 | ID=Msa1446250-mRNA-1:five_prime_utr;Parent=Msa1446250-mRNA-1 |
| tig0031297 | CDS | 7000 | 7094 | 7000 | ID=Msa1446250-mRNA-1:cds;Parent=Msa1446250-mRNA-1 |
| tig0031297 | CDS | 7383 | 7471 | 7383 | ID=Msa1446250-mRNA-1:cds;Parent=Msa1446250-mRNA-1 |
| tig0031297 | CDS | 7835 | 7959 | 7835 | ID=Msa1446250-mRNA-1:cds;Parent=Msa1446250-mRNA-1 |
| tig0031297 | CDS | 8317 | 8415 | 8317 | ID=Msa1446250-mRNA-1:cds;Parent=Msa1446250-mRNA-1 |
| tig0031297 | CDS | 8603 | 8719 | 8603 | ID=Msa1446250-mRNA-1:cds;Parent=Msa1446250-mRNA-1 |
| tig0031297 | CDS | 9044 | 9187 | 9044 | ID=Msa1446250-mRNA-1:cds;Parent=Msa1446250-mRNA-1 |
| tig0031297 | CDS | 9729 | 9878 | 9729 | ID=Msa1446250-mRNA-1:cds;Parent=Msa1446250-mRNA-1 |
| tig0031297 | three_prime_UTR | 9879 | 10218 | 9879 | ID=Msa1446250-mRNA-1:three_prime_utr;Parent=Msa1446250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
