Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461020 | XP_003602482.2 | 90.052 | 573 | 19 | 3 | 1 | 535 | 1 | 573 | 0.0 | 1038 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461020 | sp|Q9LV91|DPE1_ARATH | 69.333 | 525 | 125 | 2 | 46 | 535 | 53 | 576 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461020 | G7JAA1 | 90.052 | 573 | 19 | 3 | 1 | 535 | 1 | 573 | 0.0 | 1038 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0377390 | Msa1461020 | 0.966695 | 2.889781e-126 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461020 | MtrunA17_Chr3g0129201 | 90.052 | 573 | 19 | 3 | 1 | 535 | 1 | 573 | 0.0 | 1038 |
| Msa1461020 | MtrunA17_Chr7g0255461 | 29.730 | 222 | 132 | 4 | 176 | 382 | 197 | 409 | 1.37e-22 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1461020 | AT5G64860.1 | 69.333 | 525 | 125 | 2 | 46 | 535 | 53 | 576 | 0.0 | 764 |
| Msa1461020 | AT2G40840.1 | 27.602 | 221 | 138 | 4 | 151 | 356 | 374 | 587 | 4.05e-22 | 101 |
Find 175 sgRNAs with CRISPR-Local
Find 378 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGTAAAGCTACTTATTT+TGG | 0.034087 | tig0041231:+241 | Msa1461020:intergenic |
| TATCAATGCAGTTAGGAAAT+TGG | 0.203099 | tig0041231:-712 | Msa1461020:intron |
| AGGATATGTATGACGAATTT+AGG | 0.218710 | tig0041231:-2058 | Msa1461020:CDS |
| TTAGAGGATTTGCTGGATAT+TGG | 0.265584 | tig0041231:-2025 | Msa1461020:CDS |
| TCGTGCTGCTTCTTCGTCTT+TGG | 0.285587 | tig0041231:-5515 | Msa1461020:CDS |
| TTGGGTTTGAATTGGATAAT+TGG | 0.287909 | tig0041231:+5559 | Msa1461020:intergenic |
| ATCAATGCAGTTAGGAAATT+GGG | 0.296983 | tig0041231:-711 | Msa1461020:intron |
| ACTGTGATAATCAACATAAA+TGG | 0.306923 | tig0041231:+2733 | Msa1461020:intergenic |
| GCTTATTCATAACATCAAAA+TGG | 0.307405 | tig0041231:+353 | Msa1461020:intergenic |
| TAGAGGATTTGCTGGATATT+GGG | 0.314386 | tig0041231:-2024 | Msa1461020:CDS |
| ATACCTATGCAAGATGTTCT+TGG | 0.326016 | tig0041231:-869 | Msa1461020:CDS |
| GAACTTTCTGCCATTGCCTT+TGG | 0.328444 | tig0041231:+2801 | Msa1461020:intergenic |
| TTAAGTTATGTTTCATTAAC+CGG | 0.338339 | tig0041231:-956 | Msa1461020:CDS |
| GCGGAGATGAAGGTCGGGTT+TGG | 0.341197 | tig0041231:+5423 | Msa1461020:intergenic |
| GAGTAAGGGAATCAAGATAA+TGG | 0.344794 | tig0041231:-2765 | Msa1461020:CDS |
| GAAGGAAAGTGGTGAAGAAT+TGG | 0.345092 | tig0041231:+5540 | Msa1461020:intergenic |
| CCTGATGCATTCAGCGAAAC+TGG | 0.345108 | tig0041231:-2522 | Msa1461020:CDS |
| AAAGAGATGCTTTCAATGTA+TGG | 0.356376 | tig0041231:-629 | Msa1461020:CDS |
| ATTATCACAGTGCAGATGTT+TGG | 0.357625 | tig0041231:-2721 | Msa1461020:CDS |
| GAAGATTTGCCGTCAAATTA+CGG | 0.362767 | tig0041231:-5460 | Msa1461020:CDS |
| TTTAGGATTGACCACTTTAG+AGG | 0.371325 | tig0041231:-2041 | Msa1461020:CDS |
| TTATCACAGTGCAGATGTTT+GGG | 0.377474 | tig0041231:-2720 | Msa1461020:CDS |
| CCTCTCGTGCCTCCTGATGA+AGG | 0.378609 | tig0041231:-4878 | Msa1461020:CDS |
| GCAATTAATCATTACCAAAC+TGG | 0.379267 | tig0041231:+1518 | Msa1461020:intergenic |
| GACCACTTTAGAGGATTTGC+TGG | 0.380385 | tig0041231:-2032 | Msa1461020:CDS |
| CAACAGAGGCCAGCGCTGTC+TGG | 0.383754 | tig0041231:+906 | Msa1461020:intergenic |
| CTTGAAGAGCTTGTGGCGGA+TGG | 0.384496 | tig0041231:-4707 | Msa1461020:CDS |
| ATGCAAGATGTTCTTGGACT+TGG | 0.391264 | tig0041231:-863 | Msa1461020:CDS |
| GTGAAGAATTGGGTTTGAAT+TGG | 0.393070 | tig0041231:+5551 | Msa1461020:intergenic |
| TGCAATCAAGTTGTCTATAC+AGG | 0.400249 | tig0041231:-1339 | Msa1461020:CDS |
| CCGGAGAAGATGATATTTCA+TGG | 0.403034 | tig0041231:-937 | Msa1461020:CDS |
| CGTCAAATTACGGAGAAGAT+TGG | 0.404650 | tig0041231:-5450 | Msa1461020:CDS |
| AGTGTCTCACTTGATATGTT+AGG | 0.406310 | tig0041231:+3960 | Msa1461020:intergenic |
| TCGCGACTATGCACAGAGTA+AGG | 0.409286 | tig0041231:-2780 | Msa1461020:CDS |
| CGGAGATGAAGGTCGGGTTT+GGG | 0.416286 | tig0041231:+5424 | Msa1461020:intergenic |
| GGAATGGCTGTCCTCCAGTT+TGG | 0.420985 | tig0041231:-1532 | Msa1461020:intron |
| GTTCTAATGATATTGCAAAT+AGG | 0.424254 | tig0041231:-426 | Msa1461020:three_prime_UTR |
| TGAAAGCATCTCTTTAAGTC+TGG | 0.425733 | tig0041231:+637 | Msa1461020:intergenic |
| TTGGACTTGGGAGTTCTGCC+AGG | 0.428123 | tig0041231:-850 | Msa1461020:CDS |
| CCTTCCAACAGCTCTGGAAA+TGG | 0.429148 | tig0041231:+1771 | Msa1461020:intergenic |
| CCATGGCATTCCAATCATAC+AGG | 0.431514 | tig0041231:+2126 | Msa1461020:intergenic |
| AACTGGAGGACAGCCATTCC+AGG | 0.434227 | tig0041231:+1535 | Msa1461020:intergenic |
| TGATTGCACTCGTGATTATG+AGG | 0.437305 | tig0041231:+1354 | Msa1461020:intergenic |
| CGCAGAAGCAAAAGTAGCTA+TGG | 0.438137 | tig0041231:-1914 | Msa1461020:intron |
| AGTAAGGGAATCAAGATAAT+GGG | 0.438348 | tig0041231:-2764 | Msa1461020:CDS |
| CTGTGATAATCAACATAAAT+GGG | 0.438407 | tig0041231:+2734 | Msa1461020:intergenic |
| AAGGAAAGTGGTGAAGAATT+GGG | 0.438471 | tig0041231:+5541 | Msa1461020:intergenic |
| AAGATATTGCTCCAGCAACT+TGG | 0.439946 | tig0041231:+505 | Msa1461020:intergenic |
| CCAGTTTCGCTGAATGCATC+AGG | 0.440096 | tig0041231:+2522 | Msa1461020:intergenic |
| TTGTCAAAGCTGACAGAACT+TGG | 0.442024 | tig0041231:+677 | Msa1461020:intergenic |
| CTCTCGTGCCTCCTGATGAA+GGG | 0.443063 | tig0041231:-4877 | Msa1461020:CDS |
| TTCAAGAAATGCAAGGAAGT+TGG | 0.448549 | tig0041231:-461 | Msa1461020:three_prime_UTR |
| GGATATTGGGCTGTTCGCTC+TGG | 0.452947 | tig0041231:-2011 | Msa1461020:intron |
| AGAAAATCCATTGGAGCCCC+TGG | 0.453181 | tig0041231:-1553 | Msa1461020:CDS |
| TGCAAGATGTTCTTGGACTT+GGG | 0.453864 | tig0041231:-862 | Msa1461020:CDS |
| CAATCTTCTCCGTAATTTGA+CGG | 0.454231 | tig0041231:+5451 | Msa1461020:intergenic |
| GCCTTTGGAACAAGAACTGT+TGG | 0.455992 | tig0041231:+2816 | Msa1461020:intergenic |
| TAGGTAATGCATGCTTGTAT+TGG | 0.458526 | tig0041231:-407 | Msa1461020:three_prime_UTR |
| CTTTATACAGGGTTTGGAGG+TGG | 0.458626 | tig0041231:-1396 | Msa1461020:intron |
| GACAACTAACCAGTGCAAAC+TGG | 0.460423 | tig0041231:+2687 | Msa1461020:intergenic |
| GCATCAAAGAAGGATGTTCC+AGG | 0.462404 | tig0041231:+1793 | Msa1461020:intergenic |
| AATTCAGAATGAGTTTGTAA+TGG | 0.464970 | tig0041231:-305 | Msa1461020:three_prime_UTR |
| GATGAATATTCCTGCAACTC+AGG | 0.465810 | tig0041231:-828 | Msa1461020:intron |
| CGGCTCTTCTGCGGAGATGA+AGG | 0.467577 | tig0041231:+5413 | Msa1461020:intergenic |
| CCCAACAGTTCTTGTTCCAA+AGG | 0.468889 | tig0041231:-2817 | Msa1461020:CDS |
| GGGTTCTCCTTACGCAGGCC+AGG | 0.469543 | tig0041231:-4855 | Msa1461020:intron |
| TGCTACAGATTCAGGGTTGG+TGG | 0.469578 | tig0041231:-1101 | Msa1461020:intron |
| GTGTTTCTGCTACAGATTCA+GGG | 0.470190 | tig0041231:-1108 | Msa1461020:intron |
| ATTAATCCTTCCAACAGCTC+TGG | 0.470925 | tig0041231:+1765 | Msa1461020:intergenic |
| GAGATTTGACATTTCAAAGC+CGG | 0.471010 | tig0041231:+606 | Msa1461020:intergenic |
| AGAGGCTCATTTCAAGCAAA+GGG | 0.471243 | tig0041231:-4019 | Msa1461020:CDS |
| CGAAGAAGCAGCACGAGGGA+AGG | 0.472899 | tig0041231:+5522 | Msa1461020:intergenic |
| ACCGACGGTGAATTGAGTTA+AGG | 0.477189 | tig0041231:+5483 | Msa1461020:intergenic |
| TTACTTTATACAGGGTTTGG+AGG | 0.478987 | tig0041231:-1399 | Msa1461020:intron |
| AGCCATTCCAGGGGCTCCAA+TGG | 0.486052 | tig0041231:+1546 | Msa1461020:intergenic |
| CTACTTAAGCTTCCTTCCGT+TGG | 0.492327 | tig0041231:+555 | Msa1461020:intergenic |
| GCTTGTGGCGGATGGGTTGT+TGG | 0.492545 | tig0041231:-4699 | Msa1461020:CDS |
| TCGTGATTATGAGGCAAATG+AGG | 0.499012 | tig0041231:+1363 | Msa1461020:intergenic |
| CTTCATCTCCGCAGAAGAGC+CGG | 0.503117 | tig0041231:-5412 | Msa1461020:intron |
| AACTTGGGAATTAAAACTGC+AGG | 0.512908 | tig0041231:+521 | Msa1461020:intergenic |
| TGGAGAAAGAAGGATATTCA+TGG | 0.513659 | tig0041231:-2106 | Msa1461020:CDS |
| TTCTGCTACAGATTCAGGGT+TGG | 0.515187 | tig0041231:-1104 | Msa1461020:intron |
| TTCAGTTGTTGCTAATCTCA+AGG | 0.516033 | tig0041231:-4508 | Msa1461020:CDS |
| ACACACTCAGTTGGTACGAT+TGG | 0.517399 | tig0041231:-3034 | Msa1461020:CDS |
| GATGCCATTTCCAGAGCTGT+TGG | 0.521793 | tig0041231:-1775 | Msa1461020:CDS |
| GGCACACCACTCACTAAAAG+AGG | 0.522510 | tig0041231:+2546 | Msa1461020:intergenic |
| TCATAACATCAAAATGGCTC+AGG | 0.523135 | tig0041231:+359 | Msa1461020:intergenic |
| CCATGAAATATCATCTTCTC+CGG | 0.523754 | tig0041231:+937 | Msa1461020:intergenic |
| GATTTCTCTTGAAGAGCTTG+TGG | 0.524503 | tig0041231:-4714 | Msa1461020:CDS |
| TTGAAAACCTGGCCTGCGTA+AGG | 0.525216 | tig0041231:+4848 | Msa1461020:intergenic |
| CTTCTGCGGAGATGAAGGTC+GGG | 0.527508 | tig0041231:+5418 | Msa1461020:intergenic |
| GGCACTAATCCAGACAGCGC+TGG | 0.527588 | tig0041231:-915 | Msa1461020:CDS |
| ATCCAGCAAATCCTCTAAAG+TGG | 0.527975 | tig0041231:+2030 | Msa1461020:intergenic |
| ATCCATTGGAGCCCCTGGAA+TGG | 0.530462 | tig0041231:-1548 | Msa1461020:CDS |
| CCTTTGGAACAAGAACTGTT+GGG | 0.530614 | tig0041231:+2817 | Msa1461020:intergenic |
| CTTTGACAAGTTAGATAGAG+AGG | 0.531184 | tig0041231:-663 | Msa1461020:CDS |
| AGATGCTTTCAATGTATGGC+CGG | 0.533667 | tig0041231:-625 | Msa1461020:CDS |
| AGATATTGCTCCAGCAACTT+GGG | 0.535303 | tig0041231:+506 | Msa1461020:intergenic |
| TCTGGAAATGGCATCAAAGA+AGG | 0.535308 | tig0041231:+1783 | Msa1461020:intergenic |
| CCATTTCCAGAGCTGTTGGA+AGG | 0.535562 | tig0041231:-1771 | Msa1461020:CDS |
| GTTAGGAAATTGGGGATGGA+GGG | 0.535807 | tig0041231:-702 | Msa1461020:CDS |
| CAGCGAAACTGGTCAGCTGT+GGG | 0.536031 | tig0041231:-2511 | Msa1461020:CDS |
| TCTTCTGCGGAGATGAAGGT+CGG | 0.536239 | tig0041231:+5417 | Msa1461020:intergenic |
| TTGAAGAGCTTGTGGCGGAT+GGG | 0.541366 | tig0041231:-4706 | Msa1461020:CDS |
| TCCTTAACTCAATTCACCGT+CGG | 0.541802 | tig0041231:-5484 | Msa1461020:CDS |
| TGCATTTCTTGAACAACACA+CGG | 0.542227 | tig0041231:+471 | Msa1461020:intergenic |
| GAGAGGCTCATTTCAAGCAA+AGG | 0.546893 | tig0041231:-4020 | Msa1461020:CDS |
| TGTCTTACTTTAGTTAACAA+AGG | 0.548720 | tig0041231:+4483 | Msa1461020:intergenic |
| TAATATCACAGCAGAAGACT+TGG | 0.551709 | tig0041231:-1746 | Msa1461020:intron |
| TGAATATCCTTCTTTCTCCA+TGG | 0.553103 | tig0041231:+2109 | Msa1461020:intergenic |
| CGCGACTATGCACAGAGTAA+GGG | 0.554613 | tig0041231:-2779 | Msa1461020:CDS |
| TGGAATGCCATGGAGAAAGA+AGG | 0.555436 | tig0041231:-2116 | Msa1461020:CDS |
| TTTATCTGGCAGAACAGGAA+AGG | 0.556281 | tig0041231:-2573 | Msa1461020:intron |
| GCTACAGATTCAGGGTTGGT+GGG | 0.557995 | tig0041231:-1100 | Msa1461020:intron |
| AGAGTTTGTTTGCCAACGGA+AGG | 0.558094 | tig0041231:-567 | Msa1461020:three_prime_UTR |
| GAATTTAAATATTCTGAGCA+TGG | 0.558837 | tig0041231:+323 | Msa1461020:intergenic |
| TCTCGTGCCTCCTGATGAAG+GGG | 0.559389 | tig0041231:-4876 | Msa1461020:CDS |
| GTGCAACTAAGAAAATCCAT+TGG | 0.559487 | tig0041231:-1562 | Msa1461020:CDS |
| GCAGCACGAGGGAAGGAAAG+TGG | 0.562759 | tig0041231:+5529 | Msa1461020:intergenic |
| AGTTAGGAAATTGGGGATGG+AGG | 0.564801 | tig0041231:-703 | Msa1461020:CDS |
| AAATAAGAACCAGTTTGCAC+TGG | 0.567229 | tig0041231:-2696 | Msa1461020:intron |
| TATCTTCTAAAGCTACAAGA+TGG | 0.575053 | tig0041231:+2991 | Msa1461020:intergenic |
| TCAGCGAAACTGGTCAGCTG+TGG | 0.575757 | tig0041231:-2512 | Msa1461020:CDS |
| TGCAGTTAGGAAATTGGGGA+TGG | 0.576614 | tig0041231:-706 | Msa1461020:intron |
| AAGAAGAGTTTGTTTGCCAA+CGG | 0.579156 | tig0041231:-571 | Msa1461020:three_prime_UTR |
| CGTGATTATGAGGCAAATGA+GGG | 0.583915 | tig0041231:+1364 | Msa1461020:intergenic |
| ACTGGAGGACAGCCATTCCA+GGG | 0.584834 | tig0041231:+1536 | Msa1461020:intergenic |
| TTCTCTTGAAGAGCTTGTGG+CGG | 0.585398 | tig0041231:-4711 | Msa1461020:CDS |
| AATGATTGATAGGTAGGACC+TGG | 0.585534 | tig0041231:-1811 | Msa1461020:intron |
| AAGTAGCTATGGGTGGAAAG+TGG | 0.585848 | tig0041231:-1903 | Msa1461020:CDS |
| AAACTGGTCAGCTGTGGGGA+AGG | 0.587155 | tig0041231:-2506 | Msa1461020:intron |
| CATGGCATTCCAATCATACA+GGG | 0.589958 | tig0041231:+2127 | Msa1461020:intergenic |
| CGGAGAAGATGATATTTCAT+GGG | 0.591373 | tig0041231:-936 | Msa1461020:CDS |
| AGTTCTTGTTCCAAAGGCAA+TGG | 0.593479 | tig0041231:-2811 | Msa1461020:CDS |
| TCAATGCAGTTAGGAAATTG+GGG | 0.595897 | tig0041231:-710 | Msa1461020:intron |
| ACAGTTTGAACACACTCAGT+TGG | 0.596099 | tig0041231:-3043 | Msa1461020:CDS |
| GCAGAAGCAAAAGTAGCTAT+GGG | 0.599128 | tig0041231:-1913 | Msa1461020:intron |
| CCTTCATCAGGAGGCACGAG+AGG | 0.606278 | tig0041231:+4878 | Msa1461020:intergenic |
| CCTGTATGATTGGAATGCCA+TGG | 0.608320 | tig0041231:-2126 | Msa1461020:CDS |
| AGTTGCAGGAATATTCATCC+TGG | 0.609124 | tig0041231:+832 | Msa1461020:intergenic |
| GAAGAATACCGGCTCTTCTG+CGG | 0.610432 | tig0041231:+5404 | Msa1461020:intergenic |
| AGCTATGGGTGGAAAGTGGA+AGG | 0.611687 | tig0041231:-1899 | Msa1461020:intron |
| ACTTCGTTTCAAAGTCCCTA+CGG | 0.612313 | tig0041231:-5373 | Msa1461020:intron |
| TATTGCTGTTTGAGCAACAG+AGG | 0.616246 | tig0041231:+892 | Msa1461020:intergenic |
| AGTCCAAGAACATCTTGCAT+AGG | 0.617508 | tig0041231:+866 | Msa1461020:intergenic |
| TGTCAAAGCTGACAGAACTT+GGG | 0.618624 | tig0041231:+678 | Msa1461020:intergenic |
| TATCCTGCGCACGTCGTATG+CGG | 0.620308 | tig0041231:+2075 | Msa1461020:intergenic |
| AAGACGAAGAAGCAGCACGA+GGG | 0.621588 | tig0041231:+5518 | Msa1461020:intergenic |
| ACGCCGCATACGACGTGCGC+AGG | 0.624254 | tig0041231:-2078 | Msa1461020:CDS |
| AAAGACGAAGAAGCAGCACG+AGG | 0.629778 | tig0041231:+5517 | Msa1461020:intergenic |
| GCATTTCTTGAACAACACAC+GGG | 0.631592 | tig0041231:+472 | Msa1461020:intergenic |
| GGTGAATTGAGTTAAGGAAG+TGG | 0.633131 | tig0041231:+5489 | Msa1461020:intergenic |
| GGTGAATTCTCAGATCACTA+CGG | 0.635364 | tig0041231:+380 | Msa1461020:intergenic |
| GCAATCAAGTTGTCTATACA+GGG | 0.640828 | tig0041231:-1338 | Msa1461020:CDS |
| GATAATTGGTGATGATGATG+TGG | 0.643424 | tig0041231:+5573 | Msa1461020:intergenic |
| GAAGCAAAAGTAGCTATGGG+TGG | 0.644497 | tig0041231:-1910 | Msa1461020:CDS |
| TGTGTTGTTCAAGAAATGCA+AGG | 0.647363 | tig0041231:-468 | Msa1461020:three_prime_UTR |
| CTTCTAAAGCTACAAGATGG+CGG | 0.648614 | tig0041231:+2994 | Msa1461020:intergenic |
| ATTAATCATTACCAAACTGG+AGG | 0.655866 | tig0041231:+1521 | Msa1461020:intergenic |
| TGACGGCAAATCTTCACCGA+CGG | 0.657170 | tig0041231:+5468 | Msa1461020:intergenic |
| TCACAACACTGTCTTTCCCA+CGG | 0.658870 | tig0041231:-5600 | Msa1461020:CDS |
| AGAAAGAAGGATATTCATGG+TGG | 0.667088 | tig0041231:-2103 | Msa1461020:CDS |
| TGGCATTCCAATCATACAGG+GGG | 0.668319 | tig0041231:+2129 | Msa1461020:intergenic |
| ATGATGATGTGGTCCACCGT+GGG | 0.681619 | tig0041231:+5584 | Msa1461020:intergenic |
| CTCGTGCCTCCTGATGAAGG+GGG | 0.682535 | tig0041231:-4875 | Msa1461020:CDS |
| CTGGAGGACAGCCATTCCAG+GGG | 0.683667 | tig0041231:+1537 | Msa1461020:intergenic |
| AGCGAAACTGGTCAGCTGTG+GGG | 0.685279 | tig0041231:-2510 | Msa1461020:CDS |
| GTTTCGCTGAATGCATCAGG+AGG | 0.701501 | tig0041231:+2525 | Msa1461020:intergenic |
| GAGGCTCATTTCAAGCAAAG+GGG | 0.713602 | tig0041231:-4018 | Msa1461020:CDS |
| GATGATGATGTGGTCCACCG+TGG | 0.720240 | tig0041231:+5583 | Msa1461020:intergenic |
| ATGGCATTCCAATCATACAG+GGG | 0.722079 | tig0041231:+2128 | Msa1461020:intergenic |
| ACTTTCCTCAGGCTGCAGAG+AGG | 0.726636 | tig0041231:-4037 | Msa1461020:intron |
| CAACACTGTCTTTCCCACGG+TGG | 0.728898 | tig0041231:-5597 | Msa1461020:CDS |
| AGGGACTCATGACAATGACA+CGG | 0.747842 | tig0041231:-1319 | Msa1461020:intron |
| ATGGCAGGGAGTTATCACTG+AGG | 0.816094 | tig0041231:-1590 | Msa1461020:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAATATTTAGTAAAAC+GGG | - | tig0041231:700-719 | Msa1461020:CDS | 10.0% |
| !!! | TATATTTTTTTACTTTATAC+AGG | - | tig0041231:4395-4414 | Msa1461020:intron | 10.0% |
| !!! | ATATTTTTTTACTTTATACA+GGG | - | tig0041231:4396-4415 | Msa1461020:intron | 10.0% |
| !! | AATTAAAAAAATTGAAAACC+TGG | + | tig0041231:969-988 | Msa1461020:intergenic | 15.0% |
| !! | ATATAAAAAAAATCTCACAT+TGG | + | tig0041231:1150-1169 | Msa1461020:intergenic | 15.0% |
| !! | AATAATATCTTTAATGTTGT+AGG | - | tig0041231:2699-2718 | Msa1461020:CDS | 15.0% |
| !!! | TAAAATGATTTTTTCCTAAA+AGG | - | tig0041231:3404-3423 | Msa1461020:intron | 15.0% |
| !! | TATCAATCATTTAAATATGA+AGG | + | tig0041231:3983-4002 | Msa1461020:intergenic | 15.0% |
| !! | TTCATATTTAAATGATTGAT+AGG | - | tig0041231:3982-4001 | Msa1461020:CDS | 15.0% |
| !!! | TTTTTTTGGTTCTTTATTTA+TGG | - | tig0041231:4194-4213 | Msa1461020:intron | 15.0% |
| !! | TCATATCTATCTTATTAATA+AGG | - | tig0041231:4541-4560 | Msa1461020:intron | 15.0% |
| !!! | AATTATTTAAGACATGATAA+AGG | + | tig0041231:4640-4659 | Msa1461020:intergenic | 15.0% |
| !!! | CATATAAGTTTTTAAGTATG+TGG | + | tig0041231:632-651 | Msa1461020:intergenic | 20.0% |
| !! | TTATATCATCAAATTACTCA+GGG | + | tig0041231:1454-1473 | Msa1461020:intergenic | 20.0% |
| !! | ATTATATCATCAAATTACTC+AGG | + | tig0041231:1455-1474 | Msa1461020:intergenic | 20.0% |
| !! | AAGTAATGCTAATATGATAA+AGG | + | tig0041231:1697-1716 | Msa1461020:intergenic | 20.0% |
| !!! | AGTTGAAAATTTCTAGATAA+AGG | + | tig0041231:2070-2089 | Msa1461020:intergenic | 20.0% |
| !!! | TTTATCTAGAAATTTTCAAC+TGG | - | tig0041231:2069-2088 | Msa1461020:CDS | 20.0% |
| !!! | GAAAGAAACTTTAAGATTTA+TGG | - | tig0041231:2313-2332 | Msa1461020:intron | 20.0% |
| !!! | AGTTCCATTATTATGATTTT+GGG | + | tig0041231:2543-2562 | Msa1461020:intergenic | 20.0% |
| !!! | AAGTTCCATTATTATGATTT+TGG | + | tig0041231:2544-2563 | Msa1461020:intergenic | 20.0% |
| !!! | TTTCAATTTCTTTTGAGAAA+TGG | - | tig0041231:2562-2581 | Msa1461020:CDS | 20.0% |
| !!! | TTCAATTTCTTTTGAGAAAT+GGG | - | tig0041231:2563-2582 | Msa1461020:CDS | 20.0% |
| !! | TAATGATAATTATAGCAAGA+AGG | + | tig0041231:2878-2897 | Msa1461020:intergenic | 20.0% |
| !! | ACATGGATAATTAAGATTTA+TGG | + | tig0041231:3353-3372 | Msa1461020:intergenic | 20.0% |
| !! | CAATAATTGAATAAAGAACA+TGG | + | tig0041231:3370-3389 | Msa1461020:intergenic | 20.0% |
| !!! | AATCATTTTATGTTGAAATG+AGG | + | tig0041231:3394-3413 | Msa1461020:intergenic | 20.0% |
| !!! | ATAATGATTAGAAACCTTTT+AGG | + | tig0041231:3421-3440 | Msa1461020:intergenic | 20.0% |
| !!! | ATATGAAGGATTTTATAGTT+TGG | + | tig0041231:3969-3988 | Msa1461020:intergenic | 20.0% |
| !! | TATTTAAATGATTGATAGGT+AGG | - | tig0041231:3986-4005 | Msa1461020:CDS | 20.0% |
| !! | AAAAAAATTAAGCCTTACTT+CGG | + | tig0041231:4181-4200 | Msa1461020:intergenic | 20.0% |
| !! | ATGTTATTGTTTAATGAAGT+TGG | - | tig0041231:4786-4805 | Msa1461020:intron | 20.0% |
| !! | TTAAGTTATGTTTCATTAAC+CGG | - | tig0041231:4847-4866 | Msa1461020:intron | 20.0% |
| !!! | AATGTAAAGCTACTTATTTT+GGG | + | tig0041231:5564-5583 | Msa1461020:intergenic | 20.0% |
| !!! | TAATGTAAAGCTACTTATTT+TGG | + | tig0041231:5565-5584 | Msa1461020:intergenic | 20.0% |
| ! | TCTGAATGTAAATGTATAGA+GGG | + | tig0041231:539-558 | Msa1461020:intergenic | 25.0% |
| ! | TAAATATTTAGTAAAACGGG+TGG | - | tig0041231:703-722 | Msa1461020:CDS | 25.0% |
| !!! | GGTTTGAAATTTTGCTTTTT+AGG | - | tig0041231:1041-1060 | Msa1461020:intron | 25.0% |
| !!! | AAAAAATCTCACATTGGTTT+GGG | + | tig0041231:1144-1163 | Msa1461020:intergenic | 25.0% |
| !! | AAAAAAATCTCACATTGGTT+TGG | + | tig0041231:1145-1164 | Msa1461020:intergenic | 25.0% |
| ! | TATTATCTTTCTGATGTTTC+CGG | - | tig0041231:1210-1229 | Msa1461020:intron | 25.0% |
| ! | TGTCTTACTTTAGTTAACAA+AGG | + | tig0041231:1323-1342 | Msa1461020:intergenic | 25.0% |
| !! | ACAGTTTGAAATTTGAATCA+TGG | - | tig0041231:1340-1359 | Msa1461020:CDS | 25.0% |
| ! | ACCTCATTCAAAATGTAATA+AGG | - | tig0041231:1384-1403 | Msa1461020:CDS | 25.0% |
| !! | ACCTTATTACATTTTGAATG+AGG | + | tig0041231:1388-1407 | Msa1461020:intergenic | 25.0% |
| ! | AGAAAACTGTTAAAGGTAAT+AGG | + | tig0041231:1504-1523 | Msa1461020:intergenic | 25.0% |
| ! | TTATAGAAACTTTCTCTGAA+GGG | - | tig0041231:2103-2122 | Msa1461020:CDS | 25.0% |
| ! | TTGTAATTAGTGAAATACTG+AGG | - | tig0041231:2336-2355 | Msa1461020:intron | 25.0% |
| ! | TGTAATTAGTGAAATACTGA+GGG | - | tig0041231:2337-2356 | Msa1461020:intron | 25.0% |
| ! | TGTTCTTTGTGTCTAAATTA+CGG | + | tig0041231:2475-2494 | Msa1461020:intergenic | 25.0% |
| !!! | TTATGATTTTGGGTGTATAA+AGG | + | tig0041231:2533-2552 | Msa1461020:intergenic | 25.0% |
| ! | TACACCCAAAATCATAATAA+TGG | - | tig0041231:2536-2555 | Msa1461020:CDS | 25.0% |
| ! | CTGTGATAATCAACATAAAT+GGG | + | tig0041231:3072-3091 | Msa1461020:intergenic | 25.0% |
| ! | ACTGTGATAATCAACATAAA+TGG | + | tig0041231:3073-3092 | Msa1461020:intergenic | 25.0% |
| ! | CAAAATATTAACGCACAAAA+AGG | + | tig0041231:3488-3507 | Msa1461020:intergenic | 25.0% |
| ! | TGCAATAAAAATAATGACCA+AGG | + | tig0041231:3547-3566 | Msa1461020:intergenic | 25.0% |
| !!! | GAAGTAAGGCTTAATTTTTT+TGG | - | tig0041231:4180-4199 | Msa1461020:intron | 25.0% |
| ! | AAGATAATTAGCAATTGTTC+AGG | + | tig0041231:4367-4386 | Msa1461020:intergenic | 25.0% |
| !! | TTTTTACTTTATACAGGGTT+TGG | - | tig0041231:4401-4420 | Msa1461020:intron | 25.0% |
| ! | TATCTTATTAATAAGGACCT+CGG | - | tig0041231:4548-4567 | Msa1461020:intron | 25.0% |
| !! | TTTAAGACATGATAAAGGTA+TGG | + | tig0041231:4635-4654 | Msa1461020:intergenic | 25.0% |
| ! | TACCTGAAACATAAAAATGA+AGG | + | tig0041231:4827-4846 | Msa1461020:intergenic | 25.0% |
| ! | ATCTTATTATCAATGCAGTT+AGG | - | tig0041231:5084-5103 | Msa1461020:intron | 25.0% |
| ! | GTTCTAATGATATTGCAAAT+AGG | - | tig0041231:5377-5396 | Msa1461020:intron | 25.0% |
| ! | GCTTATTCATAACATCAAAA+TGG | + | tig0041231:5453-5472 | Msa1461020:intergenic | 25.0% |
| ! | GAATTTAAATATTCTGAGCA+TGG | + | tig0041231:5483-5502 | Msa1461020:intergenic | 25.0% |
| ! | AATTCAGAATGAGTTTGTAA+TGG | - | tig0041231:5498-5517 | Msa1461020:CDS | 25.0% |
| TTGGGTTTGAATTGGATAAT+TGG | + | tig0041231:247-266 | Msa1461020:intergenic | 30.0% | |
| TGTAAATGTATAGAGGGAAA+GGG | + | tig0041231:533-552 | Msa1461020:intergenic | 30.0% | |
| ATGTAAATGTATAGAGGGAA+AGG | + | tig0041231:534-553 | Msa1461020:intergenic | 30.0% | |
| CTCTGAATGTAAATGTATAG+AGG | + | tig0041231:540-559 | Msa1461020:intergenic | 30.0% | |
| ! | GTTCATGAGTTAGTTTATAG+CGG | - | tig0041231:667-686 | Msa1461020:CDS | 30.0% |
| ! | GTCAAGTTTGAACTCTTTTA+AGG | - | tig0041231:1012-1031 | Msa1461020:intron | 30.0% |
| ATAAGATGAGATAAGCAAAC+CGG | + | tig0041231:1232-1251 | Msa1461020:intergenic | 30.0% | |
| GATGACTAGAAAACTGTTAA+AGG | + | tig0041231:1511-1530 | Msa1461020:intergenic | 30.0% | |
| !! | TTTTCTAGTCATCTCATCAT+TGG | - | tig0041231:1518-1537 | Msa1461020:intron | 30.0% |
| !! | TGAGAAGACTAGTTTCATAA+TGG | - | tig0041231:1610-1629 | Msa1461020:intron | 30.0% |
| TTCATAATGGTGAATTGCAA+AGG | - | tig0041231:1623-1642 | Msa1461020:intron | 30.0% | |
| ACTTTATGTTAACTTTCCTC+AGG | - | tig0041231:1755-1774 | Msa1461020:CDS | 30.0% | |
| TCAATGTTTCACTTTAGTGA+TGG | - | tig0041231:1911-1930 | Msa1461020:CDS | 30.0% | |
| CAGAGAAAGTTTCTATAACT+TGG | + | tig0041231:2101-2120 | Msa1461020:intergenic | 30.0% | |
| GTTATAGAAACTTTCTCTGA+AGG | - | tig0041231:2102-2121 | Msa1461020:CDS | 30.0% | |
| TCCATTTCTGTTCAACAATT+GGG | - | tig0041231:2166-2185 | Msa1461020:intron | 30.0% | |
| GTAATTAGTGAAATACTGAG+GGG | - | tig0041231:2338-2357 | Msa1461020:intron | 30.0% | |
| ! | TTGAACATTGAGAATTTGCT+TGG | - | tig0041231:2370-2389 | Msa1461020:intron | 30.0% |
| CTTGGAATTTCTTTCATAAG+AGG | - | tig0041231:2388-2407 | Msa1461020:intron | 30.0% | |
| ATTCCTTTCGTAGAATTTAG+AGG | + | tig0041231:2438-2457 | Msa1461020:intergenic | 30.0% | |
| !! | ATTTCTTTTGAGAAATGGGT+AGG | - | tig0041231:2567-2586 | Msa1461020:intron | 30.0% |
| TCTGTCAAAACAACTCATTT+GGG | - | tig0041231:2658-2677 | Msa1461020:intron | 30.0% | |
| ! | TTTGGGAATTTTCTTTTGCA+AGG | - | tig0041231:2675-2694 | Msa1461020:intron | 30.0% |
| ATATCTTTAATGTTGTAGGC+TGG | - | tig0041231:2703-2722 | Msa1461020:CDS | 30.0% | |
| !! | TATCTTCTAAAGCTACAAGA+TGG | + | tig0041231:2815-2834 | Msa1461020:intergenic | 30.0% |
| AGTAAGGGAATCAAGATAAT+GGG | - | tig0041231:3039-3058 | Msa1461020:CDS | 30.0% | |
| ATCATCTCCACTTATTTATC+TGG | - | tig0041231:3216-3235 | Msa1461020:intron | 30.0% | |
| TATGGCTGAAGATTTATCAT+GGG | + | tig0041231:3335-3354 | Msa1461020:intergenic | 30.0% | |
| TTATGGCTGAAGATTTATCA+TGG | + | tig0041231:3336-3355 | Msa1461020:intergenic | 30.0% | |
| GAACTAAAATGACATATCAG+GGG | + | tig0041231:3459-3478 | Msa1461020:intergenic | 30.0% | |
| GGAACTAAAATGACATATCA+GGG | + | tig0041231:3460-3479 | Msa1461020:intergenic | 30.0% | |
| AGGAACTAAAATGACATATC+AGG | + | tig0041231:3461-3480 | Msa1461020:intergenic | 30.0% | |
| ! | TTTGTGCGTTAATATTTTGC+CGG | - | tig0041231:3489-3508 | Msa1461020:intron | 30.0% |
| CAAGGAAAAATGATGAAAAG+TGG | + | tig0041231:3529-3548 | Msa1461020:intergenic | 30.0% | |
| !! | CACTTTTCATCATTTTTCCT+TGG | - | tig0041231:3527-3546 | Msa1461020:intron | 30.0% |
| ATATTGAAGCACATTGTTGA+AGG | - | tig0041231:3588-3607 | Msa1461020:intron | 30.0% | |
| ATCATTAATCTGAATGAGCA+AGG | + | tig0041231:3617-3636 | Msa1461020:intergenic | 30.0% | |
| AGGATATGTATGACGAATTT+AGG | - | tig0041231:3745-3764 | Msa1461020:intron | 30.0% | |
| CAAAGGTAGAACAAAATAAC+AGG | + | tig0041231:3936-3955 | Msa1461020:intergenic | 30.0% | |
| TGTTCTACCTTTGATCTATT+TGG | - | tig0041231:3943-3962 | Msa1461020:intron | 30.0% | |
| TCATGTATGAATTGAAAGCA+AGG | + | tig0041231:4146-4165 | Msa1461020:intergenic | 30.0% | |
| !! | TTTGGTTCTTTATTTATGGC+AGG | - | tig0041231:4198-4217 | Msa1461020:intron | 30.0% |
| ! | TTGGTTCTTTATTTATGGCA+GGG | - | tig0041231:4199-4218 | Msa1461020:intron | 30.0% |
| ATTAATCATTACCAAACTGG+AGG | + | tig0041231:4285-4304 | Msa1461020:intergenic | 30.0% | |
| GCAATTAATCATTACCAAAC+TGG | + | tig0041231:4288-4307 | Msa1461020:intergenic | 30.0% | |
| TCAAACATGAGATCACTTTA+GGG | + | tig0041231:4341-4360 | Msa1461020:intergenic | 30.0% | |
| ! | TCACATGTGATTTCTCTTTT+TGG | + | tig0041231:4739-4758 | Msa1461020:intergenic | 30.0% |
| CTGAAACATAAAAATGAAGG+AGG | + | tig0041231:4824-4843 | Msa1461020:intergenic | 30.0% | |
| !! | CTCCTTCATTTTTATGTTTC+AGG | - | tig0041231:4822-4841 | Msa1461020:intron | 30.0% |
| TATCAATGCAGTTAGGAAAT+TGG | - | tig0041231:5091-5110 | Msa1461020:intron | 30.0% | |
| ATCAATGCAGTTAGGAAATT+GGG | - | tig0041231:5092-5111 | Msa1461020:intron | 30.0% | |
| AAAGAGATGCTTTCAATGTA+TGG | - | tig0041231:5174-5193 | Msa1461020:intron | 30.0% | |
| !! | GATAATTGGTGATGATGATG+TGG | + | tig0041231:233-252 | Msa1461020:intergenic | 35.0% |
| GTGAAGAATTGGGTTTGAAT+TGG | + | tig0041231:255-274 | Msa1461020:intergenic | 35.0% | |
| AAGGAAAGTGGTGAAGAATT+GGG | + | tig0041231:265-284 | Msa1461020:intergenic | 35.0% | |
| GAAGATTTGCCGTCAAATTA+CGG | - | tig0041231:343-362 | Msa1461020:three_prime_UTR | 35.0% | |
| CAATCTTCTCCGTAATTTGA+CGG | + | tig0041231:355-374 | Msa1461020:intergenic | 35.0% | |
| AAGCCTTTCGTTTCATTGAT+TGG | - | tig0041231:473-492 | Msa1461020:three_prime_UTR | 35.0% | |
| GTAAATGTATAGAGGGAAAG+GGG | + | tig0041231:532-551 | Msa1461020:intergenic | 35.0% | |
| ATTTACATTCAGAGCCTGTT+TGG | - | tig0041231:546-565 | Msa1461020:three_prime_UTR | 35.0% | |
| TCAAATAAGCTGATCCAAAC+AGG | + | tig0041231:563-582 | Msa1461020:intergenic | 35.0% | |
| !!! | TGAACTCTTTTAAGGCAATG+CGG | - | tig0041231:1020-1039 | Msa1461020:intron | 35.0% |
| TTCAGTTGTTGCTAATCTCA+AGG | - | tig0041231:1295-1314 | Msa1461020:intron | 35.0% | |
| ATCATCAAATTACTCAGGGA+TGG | + | tig0041231:1450-1469 | Msa1461020:intergenic | 35.0% | |
| AGTGTCTCACTTGATATGTT+AGG | + | tig0041231:1846-1865 | Msa1461020:intergenic | 35.0% | |
| ATTGAAGCTAACAGGAAACA+TGG | + | tig0041231:1896-1915 | Msa1461020:intergenic | 35.0% | |
| AGTGAAACATTGAAGCTAAC+AGG | + | tig0041231:1904-1923 | Msa1461020:intergenic | 35.0% | |
| CTCCATTTCTGTTCAACAAT+TGG | - | tig0041231:2165-2184 | Msa1461020:intron | 35.0% | |
| CTAGATTGAATTGATTGCCT+TGG | + | tig0041231:2192-2211 | Msa1461020:intergenic | 35.0% | |
| TACTTGTGAGAACTTCTTAC+TGG | - | tig0041231:2231-2250 | Msa1461020:intron | 35.0% | |
| GGATTATGTGATTCAGAAGT+AGG | - | tig0041231:2287-2306 | Msa1461020:intron | 35.0% | |
| TATGTGATTCAGAAGTAGGA+TGG | - | tig0041231:2291-2310 | Msa1461020:intron | 35.0% | |
| TAAGAGGATAGTCTGAACAT+TGG | - | tig0041231:2404-2423 | Msa1461020:intron | 35.0% | |
| AAGAGGATAGTCTGAACATT+GGG | - | tig0041231:2405-2424 | Msa1461020:intron | 35.0% | |
| GATCCTCTAAATTCTACGAA+AGG | - | tig0041231:2432-2451 | Msa1461020:intron | 35.0% | |
| TAGGATATCTCTACTCTTGT+GGG | - | tig0041231:2586-2605 | Msa1461020:intron | 35.0% | |
| TTCAATCAACTTTCCAAGTG+AGG | - | tig0041231:2635-2654 | Msa1461020:intron | 35.0% | |
| GTCTGTCAAAACAACTCATT+TGG | - | tig0041231:2657-2676 | Msa1461020:intron | 35.0% | |
| !!! | ATGGCGGTTTTTTAAAGGTT+CGG | + | tig0041231:2796-2815 | Msa1461020:intergenic | 35.0% |
| !!! | ACAAGATGGCGGTTTTTTAA+AGG | + | tig0041231:2801-2820 | Msa1461020:intergenic | 35.0% |
| GAGTAAGGGAATCAAGATAA+TGG | - | tig0041231:3038-3057 | Msa1461020:CDS | 35.0% | |
| ATTATCACAGTGCAGATGTT+TGG | - | tig0041231:3082-3101 | Msa1461020:CDS | 35.0% | |
| TTATCACAGTGCAGATGTTT+GGG | - | tig0041231:3083-3102 | Msa1461020:CDS | 35.0% | |
| AAATAAGAACCAGTTTGCAC+TGG | - | tig0041231:3107-3126 | Msa1461020:intron | 35.0% | |
| ! | GTCTAAACCAACCTCTTTTT+CGG | - | tig0041231:3168-3187 | Msa1461020:intron | 35.0% |
| TACAAAATGCTCCGAAAAAG+AGG | + | tig0041231:3182-3201 | Msa1461020:intergenic | 35.0% | |
| TGTTCTGCCAGATAAATAAG+TGG | + | tig0041231:3226-3245 | Msa1461020:intergenic | 35.0% | |
| ACTTATTTATCTGGCAGAAC+AGG | - | tig0041231:3225-3244 | Msa1461020:intron | 35.0% | |
| TTAACGCACAAAAAGGTGAA+AGG | + | tig0041231:3481-3500 | Msa1461020:intergenic | 35.0% | |
| ! | AGTGGTTTGTAGAATCAATC+CGG | + | tig0041231:3511-3530 | Msa1461020:intergenic | 35.0% |
| TGAATATCCTTCTTTCTCCA+TGG | + | tig0041231:3697-3716 | Msa1461020:intergenic | 35.0% | |
| TGGAGAAAGAAGGATATTCA+TGG | - | tig0041231:3697-3716 | Msa1461020:intron | 35.0% | |
| AGAAAGAAGGATATTCATGG+TGG | - | tig0041231:3700-3719 | Msa1461020:intron | 35.0% | |
| ! | TTTAGGATTGACCACTTTAG+AGG | - | tig0041231:3762-3781 | Msa1461020:intron | 35.0% |
| !! | TTAGAGGATTTGCTGGATAT+TGG | - | tig0041231:3778-3797 | Msa1461020:intron | 35.0% |
| !! | TAGAGGATTTGCTGGATATT+GGG | - | tig0041231:3779-3798 | Msa1461020:intron | 35.0% |
| AAACATCACATCGAGCAATA+AGG | + | tig0041231:3842-3861 | Msa1461020:intergenic | 35.0% | |
| AGTTTGGCCAAATAGATCAA+AGG | + | tig0041231:3953-3972 | Msa1461020:intergenic | 35.0% | |
| TAATATCACAGCAGAAGACT+TGG | - | tig0041231:4057-4076 | Msa1461020:intron | 35.0% | |
| ! | ATTGCTTCATTAGTCTCGTT+AGG | - | tig0041231:4119-4138 | Msa1461020:intron | 35.0% |
| ! | TTGCTTCATTAGTCTCGTTA+GGG | - | tig0041231:4120-4139 | Msa1461020:intron | 35.0% |
| GTGCAACTAAGAAAATCCAT+TGG | - | tig0041231:4241-4260 | Msa1461020:intron | 35.0% | |
| CTCAAACATGAGATCACTTT+AGG | + | tig0041231:4342-4361 | Msa1461020:intergenic | 35.0% | |
| TTACTTTATACAGGGTTTGG+AGG | - | tig0041231:4404-4423 | Msa1461020:intron | 35.0% | |
| ! | TGCAATCAAGTTGTCTATAC+AGG | - | tig0041231:4464-4483 | Msa1461020:intron | 35.0% |
| ! | GCAATCAAGTTGTCTATACA+GGG | - | tig0041231:4465-4484 | Msa1461020:intron | 35.0% |
| CAGGATTTAATATCGTTGAC+AGG | + | tig0041231:4666-4685 | Msa1461020:intergenic | 35.0% | |
| TCACTACCAAATATCGTCTA+TGG | + | tig0041231:4765-4784 | Msa1461020:intergenic | 35.0% | |
| CCATGAAATATCATCTTCTC+CGG | + | tig0041231:4869-4888 | Msa1461020:intergenic | 35.0% | |
| CGGAGAAGATGATATTTCAT+GGG | - | tig0041231:4867-4886 | Msa1461020:CDS | 35.0% | |
| ATACCTATGCAAGATGTTCT+TGG | - | tig0041231:4934-4953 | Msa1461020:intron | 35.0% | |
| TCAATGCAGTTAGGAAATTG+GGG | - | tig0041231:5093-5112 | Msa1461020:intron | 35.0% | |
| CTTTGACAAGTTAGATAGAG+AGG | - | tig0041231:5140-5159 | Msa1461020:intron | 35.0% | |
| !! | TGAAAGCATCTCTTTAAGTC+TGG | + | tig0041231:5169-5188 | Msa1461020:intergenic | 35.0% |
| GAGATTTGACATTTCAAAGC+CGG | + | tig0041231:5200-5219 | Msa1461020:intergenic | 35.0% | |
| ! | AAGAAGAGTTTGTTTGCCAA+CGG | - | tig0041231:5232-5251 | Msa1461020:intron | 35.0% |
| AACTTGGGAATTAAAACTGC+AGG | + | tig0041231:5285-5304 | Msa1461020:intergenic | 35.0% | |
| !!! | AGTTTTAATTCCCAAGTTGC+TGG | - | tig0041231:5287-5306 | Msa1461020:intron | 35.0% |
| TGCATTTCTTGAACAACACA+CGG | + | tig0041231:5335-5354 | Msa1461020:intergenic | 35.0% | |
| ! | TGTGTTGTTCAAGAAATGCA+AGG | - | tig0041231:5335-5354 | Msa1461020:intron | 35.0% |
| TTCAAGAAATGCAAGGAAGT+TGG | - | tig0041231:5342-5361 | Msa1461020:intron | 35.0% | |
| TAGGTAATGCATGCTTGTAT+TGG | - | tig0041231:5396-5415 | Msa1461020:intron | 35.0% | |
| TCATAACATCAAAATGGCTC+AGG | + | tig0041231:5447-5466 | Msa1461020:intergenic | 35.0% | |
| GAAGGAAAGTGGTGAAGAAT+TGG | + | tig0041231:266-285 | Msa1461020:intergenic | 40.0% | |
| GGTGAATTGAGTTAAGGAAG+TGG | + | tig0041231:317-336 | Msa1461020:intergenic | 40.0% | |
| TCCTTAACTCAATTCACCGT+CGG | - | tig0041231:319-338 | Msa1461020:three_prime_UTR | 40.0% | |
| CGTCAAATTACGGAGAAGAT+TGG | - | tig0041231:353-372 | Msa1461020:three_prime_UTR | 40.0% | |
| !! | TAGGGACTTTGAAACGAAGT+GGG | + | tig0041231:430-449 | Msa1461020:intergenic | 40.0% |
| ACTTCGTTTCAAAGTCCCTA+CGG | - | tig0041231:430-449 | Msa1461020:three_prime_UTR | 40.0% | |
| TTTCAAAGTCCCTACGGTAT+CGG | - | tig0041231:436-455 | Msa1461020:three_prime_UTR | 40.0% | |
| GAGCCAATCAATGAAACGAA+AGG | + | tig0041231:479-498 | Msa1461020:intergenic | 40.0% | |
| TCCAAACGTGCAATATTTGC+AGG | - | tig0041231:897-916 | Msa1461020:CDS | 40.0% | |
| ACCTGCAAATATTGCACGTT+TGG | + | tig0041231:901-920 | Msa1461020:intergenic | 40.0% | |
| !!! | GCTTTTTAGGATGCGAATTG+TGG | - | tig0041231:1054-1073 | Msa1461020:intron | 40.0% |
| GATTTCTCTTGAAGAGCTTG+TGG | - | tig0041231:1089-1108 | Msa1461020:CDS | 40.0% | |
| ACTGTTAAAGGTAATAGGCC+CGG | + | tig0041231:1499-1518 | Msa1461020:intergenic | 40.0% | |
| ! | TGGAATTTTGTCACGCAACA+TGG | - | tig0041231:1538-1557 | Msa1461020:CDS | 40.0% |
| AGAGGCTCATTTCAAGCAAA+GGG | - | tig0041231:1784-1803 | Msa1461020:CDS | 40.0% | |
| ! | AACAGCTTGAGAATTTTCGC+AGG | - | tig0041231:1817-1836 | Msa1461020:intron | 40.0% |
| ! | ACAGCTTGAGAATTTTCGCA+GGG | - | tig0041231:1818-1837 | Msa1461020:intron | 40.0% |
| GCCCAATTGTTGAACAGAAA+TGG | + | tig0041231:2170-2189 | Msa1461020:intergenic | 40.0% | |
| GATAGTCTGAACATTGGGTA+GGG | - | tig0041231:2410-2429 | Msa1461020:intron | 40.0% | |
| GTAGGATATCTCTACTCTTG+TGG | - | tig0041231:2585-2604 | Msa1461020:intron | 40.0% | |
| !!! | TTGTTTTGACAGACCTCACT+TGG | + | tig0041231:2651-2670 | Msa1461020:intergenic | 40.0% |
| ACAGTTTGAACACACTCAGT+TGG | - | tig0041231:2760-2779 | Msa1461020:CDS | 40.0% | |
| !!! | TGGCGGTTTTTTAAAGGTTC+GGG | + | tig0041231:2795-2814 | Msa1461020:intergenic | 40.0% |
| !! | CTTCTAAAGCTACAAGATGG+CGG | + | tig0041231:2812-2831 | Msa1461020:intergenic | 40.0% |
| ! | CTATAAGCAGGGCATTCAAT+GGG | + | tig0041231:2908-2927 | Msa1461020:intergenic | 40.0% |
| !! | CCTTTGGAACAAGAACTGTT+GGG | + | tig0041231:2989-3008 | Msa1461020:intergenic | 40.0% |
| AGTTCTTGTTCCAAAGGCAA+TGG | - | tig0041231:2992-3011 | Msa1461020:CDS | 40.0% | |
| AAATGCTCCGAAAAAGAGGT+TGG | + | tig0041231:3178-3197 | Msa1461020:intergenic | 40.0% | |
| TTTATCTGGCAGAACAGGAA+AGG | - | tig0041231:3230-3249 | Msa1461020:intron | 40.0% | |
| ATGGCATTCCAATCATACAG+GGG | + | tig0041231:3678-3697 | Msa1461020:intergenic | 40.0% | |
| CATGGCATTCCAATCATACA+GGG | + | tig0041231:3679-3698 | Msa1461020:intergenic | 40.0% | |
| ! | ATCCAGCAAATCCTCTAAAG+TGG | + | tig0041231:3776-3795 | Msa1461020:intergenic | 40.0% |
| GCAGAAGCAAAAGTAGCTAT+GGG | - | tig0041231:3890-3909 | Msa1461020:intron | 40.0% | |
| AATGATTGATAGGTAGGACC+TGG | - | tig0041231:3992-4011 | Msa1461020:CDS | 40.0% | |
| TCTGGAAATGGCATCAAAGA+AGG | + | tig0041231:4023-4042 | Msa1461020:intergenic | 40.0% | |
| ATTAATCCTTCCAACAGCTC+TGG | + | tig0041231:4041-4060 | Msa1461020:intergenic | 40.0% | |
| TAGGGTATGATGCTGAAGAA+TGG | + | tig0041231:4323-4342 | Msa1461020:intergenic | 40.0% | |
| CGTGATTATGAGGCAAATGA+GGG | + | tig0041231:4442-4461 | Msa1461020:intergenic | 40.0% | |
| TCGTGATTATGAGGCAAATG+AGG | + | tig0041231:4443-4462 | Msa1461020:intergenic | 40.0% | |
| TGATTGCACTCGTGATTATG+AGG | + | tig0041231:4452-4471 | Msa1461020:intergenic | 40.0% | |
| GCAGAAACACATATGTTGTC+AGG | + | tig0041231:4685-4704 | Msa1461020:intergenic | 40.0% | |
| ! | TGTGTTTCTGCTACAGATTC+AGG | - | tig0041231:4694-4713 | Msa1461020:CDS | 40.0% |
| ! | GTGTTTCTGCTACAGATTCA+GGG | - | tig0041231:4695-4714 | Msa1461020:CDS | 40.0% |
| TGAGTGCCATAGACGATATT+TGG | - | tig0041231:4756-4775 | Msa1461020:intron | 40.0% | |
| CCGGAGAAGATGATATTTCA+TGG | - | tig0041231:4866-4885 | Msa1461020:CDS | 40.0% | |
| !! | TATTGCTGTTTGAGCAACAG+AGG | + | tig0041231:4914-4933 | Msa1461020:intergenic | 40.0% |
| AGTCCAAGAACATCTTGCAT+AGG | + | tig0041231:4940-4959 | Msa1461020:intergenic | 40.0% | |
| ATGCAAGATGTTCTTGGACT+TGG | - | tig0041231:4940-4959 | Msa1461020:intron | 40.0% | |
| TGCAAGATGTTCTTGGACTT+GGG | - | tig0041231:4941-4960 | Msa1461020:intron | 40.0% | |
| AGTTGCAGGAATATTCATCC+TGG | + | tig0041231:4974-4993 | Msa1461020:intergenic | 40.0% | |
| GATGAATATTCCTGCAACTC+AGG | - | tig0041231:4975-4994 | Msa1461020:intron | 40.0% | |
| ! | TGAACTTTTACCTGAGTTGC+AGG | + | tig0041231:4988-5007 | Msa1461020:intergenic | 40.0% |
| TGTCAAAGCTGACAGAACTT+GGG | + | tig0041231:5128-5147 | Msa1461020:intergenic | 40.0% | |
| TTGTCAAAGCTGACAGAACT+TGG | + | tig0041231:5129-5148 | Msa1461020:intergenic | 40.0% | |
| AGATGCTTTCAATGTATGGC+CGG | - | tig0041231:5178-5197 | Msa1461020:intron | 40.0% | |
| AGATATTGCTCCAGCAACTT+GGG | + | tig0041231:5300-5319 | Msa1461020:intergenic | 40.0% | |
| AAGATATTGCTCCAGCAACT+TGG | + | tig0041231:5301-5320 | Msa1461020:intergenic | 40.0% | |
| GCATTTCTTGAACAACACAC+GGG | + | tig0041231:5334-5353 | Msa1461020:intergenic | 40.0% | |
| GGTGAATTCTCAGATCACTA+CGG | + | tig0041231:5426-5445 | Msa1461020:intergenic | 40.0% | |
| TCACAACACTGTCTTTCCCA+CGG | - | tig0041231:203-222 | Msa1461020:three_prime_UTR | 45.0% | |
| ACCGACGGTGAATTGAGTTA+AGG | + | tig0041231:323-342 | Msa1461020:intergenic | 45.0% | |
| AGTGGGATGGAGAAGAATAC+CGG | + | tig0041231:413-432 | Msa1461020:intergenic | 45.0% | |
| !! | GACTTTGAAACGAAGTGGGA+TGG | + | tig0041231:426-445 | Msa1461020:intergenic | 45.0% |
| !! | GTAGGGACTTTGAAACGAAG+TGG | + | tig0041231:431-450 | Msa1461020:intergenic | 45.0% |
| ! | ATTGATTGGCTCCACCAAAC+TGG | - | tig0041231:487-506 | Msa1461020:three_prime_UTR | 45.0% |
| TTCTCTTGAAGAGCTTGTGG+CGG | - | tig0041231:1092-1111 | Msa1461020:CDS | 45.0% | |
| ! | CGGTTGTTTCATGCATGCAA+GGG | + | tig0041231:1479-1498 | Msa1461020:intergenic | 45.0% |
| CCTTGCATGCATGAAACAAC+CGG | - | tig0041231:1477-1496 | Msa1461020:intron | 45.0% | |
| CTTGCATGCATGAAACAACC+GGG | - | tig0041231:1478-1497 | Msa1461020:intron | 45.0% | |
| GAGAGGCTCATTTCAAGCAA+AGG | - | tig0041231:1783-1802 | Msa1461020:CDS | 45.0% | |
| GAGGCTCATTTCAAGCAAAG+GGG | - | tig0041231:1785-1804 | Msa1461020:CDS | 45.0% | |
| TCTGTTCAACAATTGGGCCA+AGG | - | tig0041231:2172-2191 | Msa1461020:intron | 45.0% | |
| ACTTCTTACTGGTGCTTGCA+CGG | - | tig0041231:2242-2261 | Msa1461020:intron | 45.0% | |
| GGATAGTCTGAACATTGGGT+AGG | - | tig0041231:2409-2428 | Msa1461020:intron | 45.0% | |
| GATATCTCTACTCTTGTGGG+TGG | - | tig0041231:2589-2608 | Msa1461020:intron | 45.0% | |
| ! | ACACACTCAGTTGGTACGAT+TGG | - | tig0041231:2769-2788 | Msa1461020:CDS | 45.0% |
| ! | GCTATAAGCAGGGCATTCAA+TGG | + | tig0041231:2909-2928 | Msa1461020:intergenic | 45.0% |
| AACACCTCTGGCTATAAGCA+GGG | + | tig0041231:2919-2938 | Msa1461020:intergenic | 45.0% | |
| CGATACATCAAGAACACCTC+TGG | + | tig0041231:2931-2950 | Msa1461020:intergenic | 45.0% | |
| CCCAACAGTTCTTGTTCCAA+AGG | - | tig0041231:2986-3005 | Msa1461020:CDS | 45.0% | |
| !! | GCCTTTGGAACAAGAACTGT+TGG | + | tig0041231:2990-3009 | Msa1461020:intergenic | 45.0% |
| GAACTTTCTGCCATTGCCTT+TGG | + | tig0041231:3005-3024 | Msa1461020:intergenic | 45.0% | |
| GACAACTAACCAGTGCAAAC+TGG | + | tig0041231:3119-3138 | Msa1461020:intergenic | 45.0% | |
| ! | GGCTTTCCTCTTTTAGTGAG+TGG | - | tig0041231:3251-3270 | Msa1461020:intron | 45.0% |
| GAAAAAGCCCCCTGTATGAT+TGG | - | tig0041231:3667-3686 | Msa1461020:intron | 45.0% | |
| TGGCATTCCAATCATACAGG+GGG | + | tig0041231:3677-3696 | Msa1461020:intergenic | 45.0% | |
| CCATGGCATTCCAATCATAC+AGG | + | tig0041231:3680-3699 | Msa1461020:intergenic | 45.0% | |
| CCTGTATGATTGGAATGCCA+TGG | - | tig0041231:3677-3696 | Msa1461020:intron | 45.0% | |
| TGGAATGCCATGGAGAAAGA+AGG | - | tig0041231:3687-3706 | Msa1461020:intron | 45.0% | |
| ! | GACCACTTTAGAGGATTTGC+TGG | - | tig0041231:3771-3790 | Msa1461020:intron | 45.0% |
| CGCAGAAGCAAAAGTAGCTA+TGG | - | tig0041231:3889-3908 | Msa1461020:intron | 45.0% | |
| GAAGCAAAAGTAGCTATGGG+TGG | - | tig0041231:3893-3912 | Msa1461020:intron | 45.0% | |
| AAGTAGCTATGGGTGGAAAG+TGG | - | tig0041231:3900-3919 | Msa1461020:intron | 45.0% | |
| GCATCAAAGAAGGATGTTCC+AGG | + | tig0041231:4013-4032 | Msa1461020:intergenic | 45.0% | |
| TGACAACTCTTGCCGAAGTA+AGG | - | tig0041231:4166-4185 | Msa1461020:intron | 45.0% | |
| CTTTATACAGGGTTTGGAGG+TGG | - | tig0041231:4407-4426 | Msa1461020:intron | 45.0% | |
| AGGGACTCATGACAATGACA+CGG | - | tig0041231:4484-4503 | Msa1461020:intron | 45.0% | |
| GACATCTACAAAGCATACCG+AGG | + | tig0041231:4568-4587 | Msa1461020:intergenic | 45.0% | |
| TTCTGCTACAGATTCAGGGT+TGG | - | tig0041231:4699-4718 | Msa1461020:CDS | 45.0% | |
| TGCAGTTAGGAAATTGGGGA+TGG | - | tig0041231:5097-5116 | Msa1461020:intron | 45.0% | |
| AGTTAGGAAATTGGGGATGG+AGG | - | tig0041231:5100-5119 | Msa1461020:intron | 45.0% | |
| GTTAGGAAATTGGGGATGGA+GGG | - | tig0041231:5101-5120 | Msa1461020:intron | 45.0% | |
| ! | AGAGTTTGTTTGCCAACGGA+AGG | - | tig0041231:5236-5255 | Msa1461020:intron | 45.0% |
| CTACTTAAGCTTCCTTCCGT+TGG | + | tig0041231:5251-5270 | Msa1461020:intergenic | 45.0% | |
| !! | TTTATAAATATTTAGTAAAA+CGG | - | tig0041231:699-718 | Msa1461020:CDS | 5.0% |
| ! | ATGATGATGTGGTCCACCGT+GGG | + | tig0041231:222-241 | Msa1461020:intergenic | 50.0% |
| AAGACGAAGAAGCAGCACGA+GGG | + | tig0041231:288-307 | Msa1461020:intergenic | 50.0% | |
| AAAGACGAAGAAGCAGCACG+AGG | + | tig0041231:289-308 | Msa1461020:intergenic | 50.0% | |
| !! | TCGTGCTGCTTCTTCGTCTT+TGG | - | tig0041231:288-307 | Msa1461020:three_prime_UTR | 50.0% |
| TGACGGCAAATCTTCACCGA+CGG | + | tig0041231:338-357 | Msa1461020:intergenic | 50.0% | |
| TCTTCTGCGGAGATGAAGGT+CGG | + | tig0041231:389-408 | Msa1461020:intergenic | 50.0% | |
| !! | GAAGAATACCGGCTCTTCTG+CGG | + | tig0041231:402-421 | Msa1461020:intergenic | 50.0% |
| AAAGGGAGCAACCAGTTTGG+TGG | + | tig0041231:501-520 | Msa1461020:intergenic | 50.0% | |
| ACCAAACTGGTTGCTCCCTT+TGG | - | tig0041231:500-519 | Msa1461020:three_prime_UTR | 50.0% | |
| TAAGGAGAACCCCCTTCATC+AGG | + | tig0041231:940-959 | Msa1461020:intergenic | 50.0% | |
| TTGAAAACCTGGCCTGCGTA+AGG | + | tig0041231:958-977 | Msa1461020:intergenic | 50.0% | |
| !! | TTGAAGAGCTTGTGGCGGAT+GGG | - | tig0041231:1097-1116 | Msa1461020:intron | 50.0% |
| ! | CCGGTTGTTTCATGCATGCA+AGG | + | tig0041231:1480-1499 | Msa1461020:intergenic | 50.0% |
| GGACCACAAGTGCTTATCTG+TGG | - | tig0041231:1644-1663 | Msa1461020:intron | 50.0% | |
| CCTCCACAGATAAGCACTTG+TGG | + | tig0041231:1650-1669 | Msa1461020:intergenic | 50.0% | |
| CCACAAGTGCTTATCTGTGG+AGG | - | tig0041231:1647-1666 | Msa1461020:intron | 50.0% | |
| AATGCCCTGCTTATAGCCAG+AGG | - | tig0041231:2912-2931 | Msa1461020:intron | 50.0% | |
| GAACACCTCTGGCTATAAGC+AGG | + | tig0041231:2920-2939 | Msa1461020:intergenic | 50.0% | |
| TCGCGACTATGCACAGAGTA+AGG | - | tig0041231:3023-3042 | Msa1461020:CDS | 50.0% | |
| CGCGACTATGCACAGAGTAA+GGG | - | tig0041231:3024-3043 | Msa1461020:CDS | 50.0% | |
| GGCACACCACTCACTAAAAG+AGG | + | tig0041231:3260-3279 | Msa1461020:intergenic | 50.0% | |
| GTTTCGCTGAATGCATCAGG+AGG | + | tig0041231:3281-3300 | Msa1461020:intergenic | 50.0% | |
| CCAGTTTCGCTGAATGCATC+AGG | + | tig0041231:3284-3303 | Msa1461020:intergenic | 50.0% | |
| CCTGATGCATTCAGCGAAAC+TGG | - | tig0041231:3281-3300 | Msa1461020:intron | 50.0% | |
| AGCTATGGGTGGAAAGTGGA+AGG | - | tig0041231:3904-3923 | Msa1461020:intron | 50.0% | |
| ! | GATGCCATTTCCAGAGCTGT+TGG | - | tig0041231:4028-4047 | Msa1461020:CDS | 50.0% |
| !! | CCTTCCAACAGCTCTGGAAA+TGG | + | tig0041231:4035-4054 | Msa1461020:intergenic | 50.0% |
| CCATTTCCAGAGCTGTTGGA+AGG | - | tig0041231:4032-4051 | Msa1461020:intron | 50.0% | |
| ATGGCAGGGAGTTATCACTG+AGG | - | tig0041231:4213-4232 | Msa1461020:intron | 50.0% | |
| AGAAAATCCATTGGAGCCCC+TGG | - | tig0041231:4250-4269 | Msa1461020:intron | 50.0% | |
| TGCTACAGATTCAGGGTTGG+TGG | - | tig0041231:4702-4721 | Msa1461020:CDS | 50.0% | |
| ! | GCTACAGATTCAGGGTTGGT+GGG | - | tig0041231:4703-4722 | Msa1461020:CDS | 50.0% |
| CAACACTGTCTTTCCCACGG+TGG | - | tig0041231:206-225 | Msa1461020:three_prime_UTR | 55.0% | |
| ! | GATGATGATGTGGTCCACCG+TGG | + | tig0041231:223-242 | Msa1461020:intergenic | 55.0% |
| CGGAGATGAAGGTCGGGTTT+GGG | + | tig0041231:382-401 | Msa1461020:intergenic | 55.0% | |
| CTTCTGCGGAGATGAAGGTC+GGG | + | tig0041231:388-407 | Msa1461020:intergenic | 55.0% | |
| CTTCATCTCCGCAGAAGAGC+CGG | - | tig0041231:391-410 | Msa1461020:three_prime_UTR | 55.0% | |
| CCGAGATCACCGATACCGTA+GGG | + | tig0041231:448-467 | Msa1461020:intergenic | 55.0% | |
| !! | CCCTACGGTATCGGTGATCT+CGG | - | tig0041231:445-464 | Msa1461020:three_prime_UTR | 55.0% |
| TCCGAGATCACCGATACCGT+AGG | + | tig0041231:449-468 | Msa1461020:intergenic | 55.0% | |
| GCCAAAGGGAGCAACCAGTT+TGG | + | tig0041231:504-523 | Msa1461020:intergenic | 55.0% | |
| AACTGGTTGCTCCCTTTGGC+AGG | - | tig0041231:504-523 | Msa1461020:three_prime_UTR | 55.0% | |
| GGAAAGGGGAACCTGCCAAA+GGG | + | tig0041231:518-537 | Msa1461020:intergenic | 55.0% | |
| CTCTCGTGCCTCCTGATGAA+GGG | - | tig0041231:926-945 | Msa1461020:CDS | 55.0% | |
| TCTCGTGCCTCCTGATGAAG+GGG | - | tig0041231:927-946 | Msa1461020:CDS | 55.0% | |
| ! | CTTGAAGAGCTTGTGGCGGA+TGG | - | tig0041231:1096-1115 | Msa1461020:CDS | 55.0% |
| ACTTTCCTCAGGCTGCAGAG+AGG | - | tig0041231:1766-1785 | Msa1461020:CDS | 55.0% | |
| TCTTACTGGTGCTTGCACGG+TGG | - | tig0041231:2245-2264 | Msa1461020:intron | 55.0% | |
| TTGCACGGTGGAGATGGCAT+AGG | - | tig0041231:2257-2276 | Msa1461020:intron | 55.0% | |
| TGCACGGTGGAGATGGCATA+GGG | - | tig0041231:2258-2277 | Msa1461020:intron | 55.0% | |
| GGAGATGGCATAGGGGTTCT+AGG | - | tig0041231:2266-2285 | Msa1461020:intron | 55.0% | |
| TCAGCGAAACTGGTCAGCTG+TGG | - | tig0041231:3291-3310 | Msa1461020:intron | 55.0% | |
| CAGCGAAACTGGTCAGCTGT+GGG | - | tig0041231:3292-3311 | Msa1461020:intron | 55.0% | |
| AGCGAAACTGGTCAGCTGTG+GGG | - | tig0041231:3293-3312 | Msa1461020:intron | 55.0% | |
| AAACTGGTCAGCTGTGGGGA+AGG | - | tig0041231:3297-3316 | Msa1461020:intron | 55.0% | |
| TATCCTGCGCACGTCGTATG+CGG | + | tig0041231:3731-3750 | Msa1461020:intergenic | 55.0% | |
| GGATATTGGGCTGTTCGCTC+TGG | - | tig0041231:3792-3811 | Msa1461020:intron | 55.0% | |
| TGGGTGGAAAGTGGAAGGTC+AGG | - | tig0041231:3909-3928 | Msa1461020:intron | 55.0% | |
| ATCCATTGGAGCCCCTGGAA+TGG | - | tig0041231:4255-4274 | Msa1461020:intron | 55.0% | |
| ACTGGAGGACAGCCATTCCA+GGG | + | tig0041231:4270-4289 | Msa1461020:intergenic | 55.0% | |
| AACTGGAGGACAGCCATTCC+AGG | + | tig0041231:4271-4290 | Msa1461020:intergenic | 55.0% | |
| GGAATGGCTGTCCTCCAGTT+TGG | - | tig0041231:4271-4290 | Msa1461020:intron | 55.0% | |
| TTGGACTTGGGAGTTCTGCC+AGG | - | tig0041231:4953-4972 | Msa1461020:intron | 55.0% | |
| GCAGCACGAGGGAAGGAAAG+TGG | + | tig0041231:277-296 | Msa1461020:intergenic | 60.0% | |
| CGAAGAAGCAGCACGAGGGA+AGG | + | tig0041231:284-303 | Msa1461020:intergenic | 60.0% | |
| GCGGAGATGAAGGTCGGGTT+TGG | + | tig0041231:383-402 | Msa1461020:intergenic | 60.0% | |
| CGGCTCTTCTGCGGAGATGA+AGG | + | tig0041231:393-412 | Msa1461020:intergenic | 60.0% | |
| GGGAAAGGGGAACCTGCCAA+AGG | + | tig0041231:519-538 | Msa1461020:intergenic | 60.0% | |
| ! | CCTTCATCAGGAGGCACGAG+AGG | + | tig0041231:928-947 | Msa1461020:intergenic | 60.0% |
| CCTCTCGTGCCTCCTGATGA+AGG | - | tig0041231:925-944 | Msa1461020:CDS | 60.0% | |
| CTCGTGCCTCCTGATGAAGG+GGG | - | tig0041231:928-947 | Msa1461020:CDS | 60.0% | |
| GGAGAACCCCCTTCATCAGG+AGG | + | tig0041231:937-956 | Msa1461020:intergenic | 60.0% | |
| GAAGGGGGTTCTCCTTACGC+AGG | - | tig0041231:943-962 | Msa1461020:CDS | 60.0% | |
| !! | GCTTGTGGCGGATGGGTTGT+TGG | - | tig0041231:1104-1123 | Msa1461020:intron | 60.0% |
| ATGAGCCTCTCTGCAGCCTG+AGG | + | tig0041231:1774-1793 | Msa1461020:intergenic | 60.0% | |
| TGGTGCTTGCACGGTGGAGA+TGG | - | tig0041231:2251-2270 | Msa1461020:intron | 60.0% | |
| GCACGGTGGAGATGGCATAG+GGG | - | tig0041231:2259-2278 | Msa1461020:intron | 60.0% | |
| AGCCATTCCAGGGGCTCCAA+TGG | + | tig0041231:4260-4279 | Msa1461020:intergenic | 60.0% | |
| CTGGAGGACAGCCATTCCAG+GGG | + | tig0041231:4269-4288 | Msa1461020:intergenic | 60.0% | |
| GGCACTAATCCAGACAGCGC+TGG | - | tig0041231:4888-4907 | Msa1461020:intron | 60.0% | |
| GGGTTCTCCTTACGCAGGCC+AGG | - | tig0041231:948-967 | Msa1461020:CDS | 65.0% | |
| CAACAGAGGCCAGCGCTGTC+TGG | + | tig0041231:4900-4919 | Msa1461020:intergenic | 65.0% | |
| ACGCCGCATACGACGTGCGC+AGG | - | tig0041231:3725-3744 | Msa1461020:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041231 | gene | 178 | 5647 | 178 | ID=Msa1461020;Name=Msa1461020 |
| tig0041231 | mRNA | 178 | 5647 | 178 | ID=Msa1461020-mRNA-1;Parent=Msa1461020;Name=Msa1461020-mRNA-1;_AED=0.22;_eAED=0.23;_QI=0|0.87|0.88|1|0.87|0.94|17|441|535 |
| tig0041231 | exon | 178 | 723 | 178 | ID=Msa1461020-mRNA-1:exon:22999;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 829 | 981 | 829 | ID=Msa1461020-mRNA-1:exon:22998;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 1071 | 1115 | 1071 | ID=Msa1461020-mRNA-1:exon:22997;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 1320 | 1408 | 1320 | ID=Msa1461020-mRNA-1:exon:22996;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 1533 | 1605 | 1533 | ID=Msa1461020-mRNA-1:exon:22995;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 1747 | 1821 | 1747 | ID=Msa1461020-mRNA-1:exon:22994;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 1900 | 1931 | 1900 | ID=Msa1461020-mRNA-1:exon:22993;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 2012 | 2151 | 2012 | ID=Msa1461020-mRNA-1:exon:22992;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 2507 | 2583 | 2507 | ID=Msa1461020-mRNA-1:exon:22991;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 2697 | 2855 | 2697 | ID=Msa1461020-mRNA-1:exon:22990;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 2968 | 3104 | 2968 | ID=Msa1461020-mRNA-1:exon:22989;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 3970 | 4048 | 3970 | ID=Msa1461020-mRNA-1:exon:22988;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 4491 | 4551 | 4491 | ID=Msa1461020-mRNA-1:exon:22987;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 4674 | 4762 | 4674 | ID=Msa1461020-mRNA-1:exon:22986;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 4856 | 4906 | 4856 | ID=Msa1461020-mRNA-1:exon:22985;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 5374 | 5381 | 5374 | ID=Msa1461020-mRNA-1:exon:22984;Parent=Msa1461020-mRNA-1 |
| tig0041231 | exon | 5413 | 5647 | 5413 | ID=Msa1461020-mRNA-1:exon:22983;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 5413 | 5647 | 5413 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 5374 | 5381 | 5374 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 4856 | 4906 | 4856 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 4674 | 4762 | 4674 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 4491 | 4551 | 4491 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 3970 | 4048 | 3970 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 2968 | 3104 | 2968 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 2697 | 2855 | 2697 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 2507 | 2583 | 2507 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 2012 | 2151 | 2012 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 1900 | 1931 | 1900 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 1747 | 1821 | 1747 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 1533 | 1605 | 1533 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 1320 | 1408 | 1320 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 1071 | 1115 | 1071 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 829 | 981 | 829 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | CDS | 619 | 723 | 619 | ID=Msa1461020-mRNA-1:cds;Parent=Msa1461020-mRNA-1 |
| tig0041231 | three_prime_UTR | 178 | 618 | 178 | ID=Msa1461020-mRNA-1:three_prime_utr;Parent=Msa1461020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
