Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377390 | XP_003602482.2 | 90.227 | 573 | 18 | 3 | 1 | 535 | 1 | 573 | 0.0 | 1039 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377390 | sp|Q9LV91|DPE1_ARATH | 69.333 | 525 | 125 | 2 | 46 | 535 | 53 | 576 | 0.0 | 763 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377390 | G7JAA1 | 90.227 | 573 | 18 | 3 | 1 | 535 | 1 | 573 | 0.0 | 1039 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0377390 | Msa0792170 | 0.803191 | 3.922501e-49 | -8.615850e-47 |
| Msa0377390 | Msa1461020 | 0.966695 | 2.889781e-126 | -8.615850e-47 |
| Msa0269360 | Msa0377390 | 0.801817 | 7.530093e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377390 | MtrunA17_Chr3g0129201 | 90.227 | 573 | 18 | 3 | 1 | 535 | 1 | 573 | 0.0 | 1039 |
| Msa0377390 | MtrunA17_Chr7g0255461 | 29.730 | 222 | 132 | 4 | 176 | 382 | 197 | 409 | 1.48e-22 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0377390 | AT5G64860.1 | 69.333 | 525 | 125 | 2 | 46 | 535 | 53 | 576 | 0.0 | 763 |
| Msa0377390 | AT2G40840.1 | 27.602 | 221 | 138 | 4 | 151 | 356 | 374 | 587 | 4.31e-22 | 101 |
Find 174 sgRNAs with CRISPR-Local
Find 377 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAATGTAAAGCTACTTATTT+TGG | 0.034087 | 3_1:+77819084 | None:intergenic |
| TATCAATGCAGTTTGGAAAT+TGG | 0.190324 | 3_1:-77819555 | Msa0377390:intron |
| AGGATATGTATGACGAATTT+AGG | 0.218710 | 3_1:-77820903 | Msa0377390:CDS |
| TTAGAGGATTTGCTGGATAT+TGG | 0.265584 | 3_1:-77820870 | Msa0377390:CDS |
| ATCAATGCAGTTTGGAAATT+GGG | 0.274267 | 3_1:-77819554 | Msa0377390:intron |
| TCGTGCTGCTTCTTCGTCTT+TGG | 0.285587 | 3_1:-77824359 | Msa0377390:CDS |
| TTGGGTTTGAATTGGATAAT+TGG | 0.287909 | 3_1:+77824403 | None:intergenic |
| ACTGTGATAATCAACATAAA+TGG | 0.306923 | 3_1:+77821578 | None:intergenic |
| GCTTATTCATAACATCAAAA+TGG | 0.307405 | 3_1:+77819196 | None:intergenic |
| TAGAGGATTTGCTGGATATT+GGG | 0.314386 | 3_1:-77820869 | Msa0377390:CDS |
| ATACCTATGCAAGATGTTCT+TGG | 0.326016 | 3_1:-77819712 | Msa0377390:CDS |
| GAACTTTCTGCCATTGCCTT+TGG | 0.328444 | 3_1:+77821646 | None:intergenic |
| TTAAGTTATGTTTCATTAAC+CGG | 0.338339 | 3_1:-77819799 | Msa0377390:CDS |
| GCGGAGATGAAGGTCGGGTT+TGG | 0.341197 | 3_1:+77824267 | None:intergenic |
| GAGTAAGGGAATCAAGATAA+TGG | 0.344794 | 3_1:-77821610 | Msa0377390:CDS |
| GAAGGAAAGTGGTGAAGAAT+TGG | 0.345092 | 3_1:+77824384 | None:intergenic |
| CCTGATGCATTCAGCGAAAC+TGG | 0.345108 | 3_1:-77821367 | Msa0377390:CDS |
| AAAGAGATGCTTTCAATGTA+TGG | 0.356376 | 3_1:-77819472 | Msa0377390:CDS |
| ATTATCACAGTGCAGATGTT+TGG | 0.357625 | 3_1:-77821566 | Msa0377390:CDS |
| GAAGATTTGCCGTCAAATTA+CGG | 0.362767 | 3_1:-77824304 | Msa0377390:CDS |
| TTTAGGATTGACCACTTTAG+AGG | 0.371325 | 3_1:-77820886 | Msa0377390:CDS |
| TTATCACAGTGCAGATGTTT+GGG | 0.377474 | 3_1:-77821565 | Msa0377390:CDS |
| CCTCTCGTGCCTCCTGATGA+AGG | 0.378609 | 3_1:-77823723 | Msa0377390:CDS |
| GCAATTAATCATTACCAAAC+TGG | 0.379267 | 3_1:+77820361 | None:intergenic |
| GACCACTTTAGAGGATTTGC+TGG | 0.380385 | 3_1:-77820877 | Msa0377390:CDS |
| CAACAGAGGCCAGCGCTGTC+TGG | 0.383754 | 3_1:+77819749 | None:intergenic |
| CTTGAAGAGCTTGTGGCGGA+TGG | 0.384496 | 3_1:-77823552 | Msa0377390:CDS |
| ATGCAAGATGTTCTTGGACT+TGG | 0.391264 | 3_1:-77819706 | Msa0377390:CDS |
| GTGAAGAATTGGGTTTGAAT+TGG | 0.393070 | 3_1:+77824395 | None:intergenic |
| TGCAATCAAGTTGTCTATAC+AGG | 0.400249 | 3_1:-77820182 | Msa0377390:CDS |
| CCGGAGAAGATGATATTTCA+TGG | 0.403034 | 3_1:-77819780 | Msa0377390:CDS |
| CGTCAAATTACGGAGAAGAT+TGG | 0.404650 | 3_1:-77824294 | Msa0377390:CDS |
| AGTGTCTCACTTGATATGTT+AGG | 0.406310 | 3_1:+77822805 | None:intergenic |
| TCGCGACTATGCACAGAGTA+AGG | 0.409286 | 3_1:-77821625 | Msa0377390:CDS |
| CGGAGATGAAGGTCGGGTTT+GGG | 0.416286 | 3_1:+77824268 | None:intergenic |
| GGAATGGCTGTCCTCCAGTT+TGG | 0.420985 | 3_1:-77820375 | Msa0377390:intron |
| GTTCTAATGATATTGCAAAT+AGG | 0.424254 | 3_1:-77819269 | Msa0377390:three_prime_UTR |
| TGAAAGCATCTCTTTAAGTC+TGG | 0.425733 | 3_1:+77819480 | None:intergenic |
| TTGGACTTGGGAGTTCTGCC+AGG | 0.428123 | 3_1:-77819693 | Msa0377390:CDS |
| CCTTCCAACAGCTCTGGAAA+TGG | 0.429148 | 3_1:+77820616 | None:intergenic |
| CCATGGCATTCCAATCATAC+AGG | 0.431514 | 3_1:+77820971 | None:intergenic |
| AACTGGAGGACAGCCATTCC+AGG | 0.434227 | 3_1:+77820378 | None:intergenic |
| TGATTGCACTCGTGATTATG+AGG | 0.437305 | 3_1:+77820197 | None:intergenic |
| CGCAGAAGCAAAAGTAGCTA+TGG | 0.438137 | 3_1:-77820759 | Msa0377390:intron |
| AGTAAGGGAATCAAGATAAT+GGG | 0.438348 | 3_1:-77821609 | Msa0377390:CDS |
| CTGTGATAATCAACATAAAT+GGG | 0.438407 | 3_1:+77821579 | None:intergenic |
| AAGGAAAGTGGTGAAGAATT+GGG | 0.438471 | 3_1:+77824385 | None:intergenic |
| AAGATATTGCTCCAGCAACT+TGG | 0.439946 | 3_1:+77819348 | None:intergenic |
| CCAGTTTCGCTGAATGCATC+AGG | 0.440096 | 3_1:+77821367 | None:intergenic |
| TTGTCAAAGCTGACAGAACT+TGG | 0.442024 | 3_1:+77819520 | None:intergenic |
| CTCTCGTGCCTCCTGATGAA+GGG | 0.443063 | 3_1:-77823722 | Msa0377390:CDS |
| TTCAAGAAATGCAAGGAAGT+TGG | 0.448549 | 3_1:-77819304 | Msa0377390:three_prime_UTR |
| GGATATTGGGCTGTTCGCTC+TGG | 0.452947 | 3_1:-77820856 | Msa0377390:intron |
| AGAAAATCCATTGGAGCCCC+TGG | 0.453181 | 3_1:-77820396 | Msa0377390:CDS |
| TGCAAGATGTTCTTGGACTT+GGG | 0.453864 | 3_1:-77819705 | Msa0377390:CDS |
| CAATCTTCTCCGTAATTTGA+CGG | 0.454231 | 3_1:+77824295 | None:intergenic |
| GCCTTTGGAACAAGAACTGT+TGG | 0.455992 | 3_1:+77821661 | None:intergenic |
| TAGGTAATGCATGCTTGTAT+TGG | 0.458526 | 3_1:-77819250 | Msa0377390:three_prime_UTR |
| CTTTATACAGGGTTTGGAGG+TGG | 0.458626 | 3_1:-77820239 | Msa0377390:intron |
| GACAACTAACCAGTGCAAAC+TGG | 0.460423 | 3_1:+77821532 | None:intergenic |
| GCATCAAAGAAGGATGTTCC+AGG | 0.462404 | 3_1:+77820638 | None:intergenic |
| AATTCAGAATGAGTTTGTAA+TGG | 0.464970 | 3_1:-77819148 | Msa0377390:three_prime_UTR |
| GATGAATATTCCTGCAACTC+AGG | 0.465810 | 3_1:-77819671 | Msa0377390:intron |
| CGGCTCTTCTGCGGAGATGA+AGG | 0.467577 | 3_1:+77824257 | None:intergenic |
| CCCAACAGTTCTTGTTCCAA+AGG | 0.468889 | 3_1:-77821662 | Msa0377390:CDS |
| GGGTTCTCCTTACGCAGGCC+AGG | 0.469543 | 3_1:-77823700 | Msa0377390:intron |
| TGCTACAGATTCAGGGTTGG+TGG | 0.469578 | 3_1:-77819944 | Msa0377390:intron |
| GTGTTTCTGCTACAGATTCA+GGG | 0.470190 | 3_1:-77819951 | Msa0377390:intron |
| ATTAATCCTTCCAACAGCTC+TGG | 0.470925 | 3_1:+77820610 | None:intergenic |
| GAGATTTGACATTTCAAAGC+CGG | 0.471010 | 3_1:+77819449 | None:intergenic |
| AGAGGCTCATTTCAAGCAAA+GGG | 0.471243 | 3_1:-77822864 | Msa0377390:CDS |
| CGAAGAAGCAGCACGAGGGA+AGG | 0.472899 | 3_1:+77824366 | None:intergenic |
| ACCGACGGTGAATTGAGTTA+AGG | 0.477189 | 3_1:+77824327 | None:intergenic |
| TTACTTTATACAGGGTTTGG+AGG | 0.478987 | 3_1:-77820242 | Msa0377390:intron |
| AGCCATTCCAGGGGCTCCAA+TGG | 0.486052 | 3_1:+77820389 | None:intergenic |
| CTACTTAAGCTTCCTTCCGT+TGG | 0.492327 | 3_1:+77819398 | None:intergenic |
| GCTTGTGGCGGATGGGTTGT+TGG | 0.492545 | 3_1:-77823544 | Msa0377390:CDS |
| TCGTGATTATGAGGCAAATG+AGG | 0.499012 | 3_1:+77820206 | None:intergenic |
| CTTCATCTCCGCAGAAGAGC+CGG | 0.503117 | 3_1:-77824256 | Msa0377390:intron |
| GTTTGGAAATTGGGGATGGA+GGG | 0.503792 | 3_1:-77819545 | Msa0377390:CDS |
| AACTTGGGAATTAAAACTGC+AGG | 0.512908 | 3_1:+77819364 | None:intergenic |
| TGGAGAAAGAAGGATATTCA+TGG | 0.513659 | 3_1:-77820951 | Msa0377390:CDS |
| TTCTGCTACAGATTCAGGGT+TGG | 0.515187 | 3_1:-77819947 | Msa0377390:intron |
| TTCAGTTGTTGCTAATCTCA+AGG | 0.516033 | 3_1:-77823353 | Msa0377390:CDS |
| ACACACTCAGTTGGTACGAT+TGG | 0.517399 | 3_1:-77821879 | Msa0377390:CDS |
| GATGCCATTTCCAGAGCTGT+TGG | 0.521793 | 3_1:-77820620 | Msa0377390:CDS |
| GGCACACCACTCACTAAAAG+AGG | 0.522510 | 3_1:+77821391 | None:intergenic |
| TCATAACATCAAAATGGCTC+AGG | 0.523135 | 3_1:+77819202 | None:intergenic |
| CCATGAAATATCATCTTCTC+CGG | 0.523754 | 3_1:+77819780 | None:intergenic |
| GATTTCTCTTGAAGAGCTTG+TGG | 0.524503 | 3_1:-77823559 | Msa0377390:CDS |
| TTGAAAACCTGGCCTGCGTA+AGG | 0.525216 | 3_1:+77823693 | None:intergenic |
| CTTCTGCGGAGATGAAGGTC+GGG | 0.527508 | 3_1:+77824262 | None:intergenic |
| GGCACTAATCCAGACAGCGC+TGG | 0.527588 | 3_1:-77819758 | Msa0377390:CDS |
| ATCCAGCAAATCCTCTAAAG+TGG | 0.527975 | 3_1:+77820875 | None:intergenic |
| ATCCATTGGAGCCCCTGGAA+TGG | 0.530462 | 3_1:-77820391 | Msa0377390:CDS |
| CCTTTGGAACAAGAACTGTT+GGG | 0.530614 | 3_1:+77821662 | None:intergenic |
| CTTTGACAAGTTAGATAGAG+AGG | 0.531184 | 3_1:-77819506 | Msa0377390:CDS |
| AGATGCTTTCAATGTATGGC+CGG | 0.533667 | 3_1:-77819468 | Msa0377390:CDS |
| AGATATTGCTCCAGCAACTT+GGG | 0.535303 | 3_1:+77819349 | None:intergenic |
| TCTGGAAATGGCATCAAAGA+AGG | 0.535308 | 3_1:+77820628 | None:intergenic |
| CCATTTCCAGAGCTGTTGGA+AGG | 0.535562 | 3_1:-77820616 | Msa0377390:CDS |
| CAGCGAAACTGGTCAGCTGT+GGG | 0.536031 | 3_1:-77821356 | Msa0377390:CDS |
| TCTTCTGCGGAGATGAAGGT+CGG | 0.536239 | 3_1:+77824261 | None:intergenic |
| TCAATGCAGTTTGGAAATTG+GGG | 0.539478 | 3_1:-77819553 | Msa0377390:intron |
| TGCAGTTTGGAAATTGGGGA+TGG | 0.541313 | 3_1:-77819549 | Msa0377390:intron |
| TTGAAGAGCTTGTGGCGGAT+GGG | 0.541366 | 3_1:-77823551 | Msa0377390:CDS |
| TCCTTAACTCAATTCACCGT+CGG | 0.541802 | 3_1:-77824328 | Msa0377390:CDS |
| TGCATTTCTTGAACAACACA+CGG | 0.542227 | 3_1:+77819314 | None:intergenic |
| GAGAGGCTCATTTCAAGCAA+AGG | 0.546893 | 3_1:-77822865 | Msa0377390:CDS |
| TGTCTTACTTTAGTTAACAA+AGG | 0.548720 | 3_1:+77823328 | None:intergenic |
| TAATATCACAGCAGAAGACT+TGG | 0.551709 | 3_1:-77820591 | Msa0377390:intron |
| TGAATATCCTTCTTTCTCCA+TGG | 0.553103 | 3_1:+77820954 | None:intergenic |
| CGCGACTATGCACAGAGTAA+GGG | 0.554613 | 3_1:-77821624 | Msa0377390:CDS |
| TGGAATGCCATGGAGAAAGA+AGG | 0.555436 | 3_1:-77820961 | Msa0377390:CDS |
| TTTATCTGGCAGAACAGGAA+AGG | 0.556281 | 3_1:-77821418 | Msa0377390:intron |
| GCTACAGATTCAGGGTTGGT+GGG | 0.557995 | 3_1:-77819943 | Msa0377390:intron |
| AGAGTTTGTTTGCCAACGGA+AGG | 0.558094 | 3_1:-77819410 | Msa0377390:three_prime_UTR |
| TCTCGTGCCTCCTGATGAAG+GGG | 0.559389 | 3_1:-77823721 | Msa0377390:CDS |
| GTGCAACTAAGAAAATCCAT+TGG | 0.559487 | 3_1:-77820405 | Msa0377390:CDS |
| GCAGCACGAGGGAAGGAAAG+TGG | 0.562759 | 3_1:+77824373 | None:intergenic |
| AGTTTGGAAATTGGGGATGG+AGG | 0.564313 | 3_1:-77819546 | Msa0377390:CDS |
| AAATAAGAACCAGTTTGCAC+TGG | 0.567229 | 3_1:-77821541 | Msa0377390:intron |
| TATCTTCTAAAGCTACAAGA+TGG | 0.575053 | 3_1:+77821836 | None:intergenic |
| TCAGCGAAACTGGTCAGCTG+TGG | 0.575757 | 3_1:-77821357 | Msa0377390:CDS |
| AAGAAGAGTTTGTTTGCCAA+CGG | 0.579156 | 3_1:-77819414 | Msa0377390:three_prime_UTR |
| CGTGATTATGAGGCAAATGA+GGG | 0.583915 | 3_1:+77820207 | None:intergenic |
| ACTGGAGGACAGCCATTCCA+GGG | 0.584834 | 3_1:+77820379 | None:intergenic |
| TTCTCTTGAAGAGCTTGTGG+CGG | 0.585398 | 3_1:-77823556 | Msa0377390:CDS |
| AATGATTGATAGGTAGGACC+TGG | 0.585534 | 3_1:-77820656 | Msa0377390:intron |
| AAGTAGCTATGGGTGGAAAG+TGG | 0.585848 | 3_1:-77820748 | Msa0377390:CDS |
| AAACTGGTCAGCTGTGGGGA+AGG | 0.587155 | 3_1:-77821351 | Msa0377390:intron |
| CATGGCATTCCAATCATACA+GGG | 0.589958 | 3_1:+77820972 | None:intergenic |
| CGGAGAAGATGATATTTCAT+GGG | 0.591373 | 3_1:-77819779 | Msa0377390:CDS |
| AGTTCTTGTTCCAAAGGCAA+TGG | 0.593479 | 3_1:-77821656 | Msa0377390:CDS |
| ACAGTTTGAACACACTCAGT+TGG | 0.596099 | 3_1:-77821888 | Msa0377390:CDS |
| GCAGAAGCAAAAGTAGCTAT+GGG | 0.599128 | 3_1:-77820758 | Msa0377390:intron |
| CCTTCATCAGGAGGCACGAG+AGG | 0.606278 | 3_1:+77823723 | None:intergenic |
| CCTGTATGATTGGAATGCCA+TGG | 0.608320 | 3_1:-77820971 | Msa0377390:CDS |
| AGTTGCAGGAATATTCATCC+TGG | 0.609124 | 3_1:+77819675 | None:intergenic |
| GAAGAATACCGGCTCTTCTG+CGG | 0.610432 | 3_1:+77824248 | None:intergenic |
| AGCTATGGGTGGAAAGTGGA+AGG | 0.611687 | 3_1:-77820744 | Msa0377390:intron |
| ACTTCGTTTCAAAGTCCCTA+CGG | 0.612313 | 3_1:-77824217 | Msa0377390:intron |
| TATTGCTGTTTGAGCAACAG+AGG | 0.616246 | 3_1:+77819735 | None:intergenic |
| AGTCCAAGAACATCTTGCAT+AGG | 0.617508 | 3_1:+77819709 | None:intergenic |
| TGTCAAAGCTGACAGAACTT+GGG | 0.618624 | 3_1:+77819521 | None:intergenic |
| TATCCTGCGCACGTCGTATG+CGG | 0.620308 | 3_1:+77820920 | None:intergenic |
| AAGACGAAGAAGCAGCACGA+GGG | 0.621588 | 3_1:+77824362 | None:intergenic |
| ACGCCGCATACGACGTGCGC+AGG | 0.624254 | 3_1:-77820923 | Msa0377390:CDS |
| AAAGACGAAGAAGCAGCACG+AGG | 0.629778 | 3_1:+77824361 | None:intergenic |
| GCATTTCTTGAACAACACAC+GGG | 0.631592 | 3_1:+77819315 | None:intergenic |
| GGTGAATTGAGTTAAGGAAG+TGG | 0.633131 | 3_1:+77824333 | None:intergenic |
| GGTGAATTCTCAGATCACTA+CGG | 0.635364 | 3_1:+77819223 | None:intergenic |
| GCAATCAAGTTGTCTATACA+GGG | 0.640828 | 3_1:-77820181 | Msa0377390:CDS |
| GATAATTGGTGATGATGATG+TGG | 0.643424 | 3_1:+77824417 | None:intergenic |
| GAAGCAAAAGTAGCTATGGG+TGG | 0.644497 | 3_1:-77820755 | Msa0377390:CDS |
| TGTGTTGTTCAAGAAATGCA+AGG | 0.647363 | 3_1:-77819311 | Msa0377390:three_prime_UTR |
| CTTCTAAAGCTACAAGATGG+CGG | 0.648614 | 3_1:+77821839 | None:intergenic |
| ATTAATCATTACCAAACTGG+AGG | 0.655866 | 3_1:+77820364 | None:intergenic |
| TGACGGCAAATCTTCACCGA+CGG | 0.657170 | 3_1:+77824312 | None:intergenic |
| TCACAACACTGTCTTTCCCA+CGG | 0.658870 | 3_1:-77824444 | Msa0377390:CDS |
| AGAAAGAAGGATATTCATGG+TGG | 0.667088 | 3_1:-77820948 | Msa0377390:CDS |
| TGGCATTCCAATCATACAGG+GGG | 0.668319 | 3_1:+77820974 | None:intergenic |
| ATGATGATGTGGTCCACCGT+GGG | 0.681619 | 3_1:+77824428 | None:intergenic |
| CTCGTGCCTCCTGATGAAGG+GGG | 0.682535 | 3_1:-77823720 | Msa0377390:CDS |
| CTGGAGGACAGCCATTCCAG+GGG | 0.683667 | 3_1:+77820380 | None:intergenic |
| AGCGAAACTGGTCAGCTGTG+GGG | 0.685279 | 3_1:-77821355 | Msa0377390:CDS |
| GTTTCGCTGAATGCATCAGG+AGG | 0.701501 | 3_1:+77821370 | None:intergenic |
| GAGGCTCATTTCAAGCAAAG+GGG | 0.713602 | 3_1:-77822863 | Msa0377390:CDS |
| GATGATGATGTGGTCCACCG+TGG | 0.720240 | 3_1:+77824427 | None:intergenic |
| ATGGCATTCCAATCATACAG+GGG | 0.722079 | 3_1:+77820973 | None:intergenic |
| ACTTTCCTCAGGCTGCAGAG+AGG | 0.726636 | 3_1:-77822882 | Msa0377390:intron |
| CAACACTGTCTTTCCCACGG+TGG | 0.728898 | 3_1:-77824441 | Msa0377390:CDS |
| AGGGACTCATGACAATGACA+CGG | 0.747842 | 3_1:-77820162 | Msa0377390:intron |
| ATGGCAGGGAGTTATCACTG+AGG | 0.816094 | 3_1:-77820433 | Msa0377390:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAATATTTAGTAAAAC+GGG | - | chr3_1:77819543-77819562 | Msa0377390:CDS | 10.0% |
| !!! | TATATTTTTTTACTTTATAC+AGG | - | chr3_1:77823239-77823258 | Msa0377390:intron | 10.0% |
| !!! | ATATTTTTTTACTTTATACA+GGG | - | chr3_1:77823240-77823259 | Msa0377390:intron | 10.0% |
| !! | AATTAAAAAAATTGAAAACC+TGG | + | chr3_1:77819811-77819830 | None:intergenic | 15.0% |
| !! | ATATAAAAAAAATCTCACAT+TGG | + | chr3_1:77819992-77820011 | None:intergenic | 15.0% |
| !! | AATAATATCTTTAATGTTGT+AGG | - | chr3_1:77821541-77821560 | Msa0377390:intron | 15.0% |
| !!! | TAAAATGATTTTTTCCTAAA+AGG | - | chr3_1:77822246-77822265 | Msa0377390:intron | 15.0% |
| !! | TATCAATCATTTAAATATGA+AGG | + | chr3_1:77822825-77822844 | None:intergenic | 15.0% |
| !! | TTCATATTTAAATGATTGAT+AGG | - | chr3_1:77822824-77822843 | Msa0377390:CDS | 15.0% |
| !!! | TTTTTTTGGTTCTTTATTTA+TGG | - | chr3_1:77823038-77823057 | Msa0377390:intron | 15.0% |
| !! | TCATATCTATCTTATTAATA+AGG | - | chr3_1:77823385-77823404 | Msa0377390:intron | 15.0% |
| !!! | AATTATTTAAGACATGATAA+AGG | + | chr3_1:77823484-77823503 | None:intergenic | 15.0% |
| !!! | CATATAAGTTTTTAAGTATG+TGG | + | chr3_1:77819475-77819494 | None:intergenic | 20.0% |
| !! | TTATATCATCAAATTACTCA+GGG | + | chr3_1:77820296-77820315 | None:intergenic | 20.0% |
| !! | ATTATATCATCAAATTACTC+AGG | + | chr3_1:77820297-77820316 | None:intergenic | 20.0% |
| !! | AAGTAATGCTAATATGATAA+AGG | + | chr3_1:77820539-77820558 | None:intergenic | 20.0% |
| !!! | AGTTGAAAATTTCTAGATAA+AGG | + | chr3_1:77820912-77820931 | None:intergenic | 20.0% |
| !!! | TTTATCTAGAAATTTTCAAC+TGG | - | chr3_1:77820911-77820930 | Msa0377390:CDS | 20.0% |
| !!! | GAAAGAAACTTTAAGATTTA+TGG | - | chr3_1:77821155-77821174 | Msa0377390:intron | 20.0% |
| !!! | AGTTCCATTATTATGATTTT+GGG | + | chr3_1:77821385-77821404 | None:intergenic | 20.0% |
| !!! | AAGTTCCATTATTATGATTT+TGG | + | chr3_1:77821386-77821405 | None:intergenic | 20.0% |
| !!! | TTTCAATTTCTTTTGAGAAA+TGG | - | chr3_1:77821404-77821423 | Msa0377390:CDS | 20.0% |
| !!! | TTCAATTTCTTTTGAGAAAT+GGG | - | chr3_1:77821405-77821424 | Msa0377390:CDS | 20.0% |
| !! | TAATGATAATTATAGCAAGA+AGG | + | chr3_1:77821720-77821739 | None:intergenic | 20.0% |
| !! | ACATGGATAATTAAGATTTA+TGG | + | chr3_1:77822195-77822214 | None:intergenic | 20.0% |
| !! | CAATAATTGAATAAAGAACA+TGG | + | chr3_1:77822212-77822231 | None:intergenic | 20.0% |
| !!! | AATCATTTTATGTTGAAATG+AGG | + | chr3_1:77822236-77822255 | None:intergenic | 20.0% |
| !!! | ATAATGATTAGAAACCTTTT+AGG | + | chr3_1:77822263-77822282 | None:intergenic | 20.0% |
| !!! | ATATGAAGGATTTTATAGTT+TGG | + | chr3_1:77822811-77822830 | None:intergenic | 20.0% |
| !! | TATTTAAATGATTGATAGGT+AGG | - | chr3_1:77822828-77822847 | Msa0377390:CDS | 20.0% |
| !! | AAAAAAATTAAGCCTTACTT+CGG | + | chr3_1:77823025-77823044 | None:intergenic | 20.0% |
| !! | ATGTTATTGTTTAATGAAGT+TGG | - | chr3_1:77823630-77823649 | Msa0377390:intron | 20.0% |
| !! | TTAAGTTATGTTTCATTAAC+CGG | - | chr3_1:77823691-77823710 | Msa0377390:intron | 20.0% |
| !!! | AATGTAAAGCTACTTATTTT+GGG | + | chr3_1:77824408-77824427 | None:intergenic | 20.0% |
| !!! | TAATGTAAAGCTACTTATTT+TGG | + | chr3_1:77824409-77824428 | None:intergenic | 20.0% |
| ! | TCTGAATGTAAATGTATAGA+GGG | + | chr3_1:77819382-77819401 | None:intergenic | 25.0% |
| ! | TAAATATTTAGTAAAACGGG+TGG | - | chr3_1:77819546-77819565 | Msa0377390:CDS | 25.0% |
| !!! | GGTTTGAAATTTTGCTTTTT+AGG | - | chr3_1:77819883-77819902 | Msa0377390:intron | 25.0% |
| !!! | AAAAAATCTCACATTGGTTT+GGG | + | chr3_1:77819986-77820005 | None:intergenic | 25.0% |
| !! | AAAAAAATCTCACATTGGTT+TGG | + | chr3_1:77819987-77820006 | None:intergenic | 25.0% |
| ! | TATTATCTTTCTGATGTTTC+CGG | - | chr3_1:77820052-77820071 | Msa0377390:intron | 25.0% |
| ! | TGTCTTACTTTAGTTAACAA+AGG | + | chr3_1:77820165-77820184 | None:intergenic | 25.0% |
| !! | ACAGTTTGAAATTTGAATCA+TGG | - | chr3_1:77820182-77820201 | Msa0377390:CDS | 25.0% |
| ! | ACCTCATTCAAAATGTAATA+AGG | - | chr3_1:77820226-77820245 | Msa0377390:CDS | 25.0% |
| !! | ACCTTATTACATTTTGAATG+AGG | + | chr3_1:77820230-77820249 | None:intergenic | 25.0% |
| ! | AGAAAACTGTTAAAGGTAAT+AGG | + | chr3_1:77820346-77820365 | None:intergenic | 25.0% |
| ! | TTATAGAAACTTTCTCTGAA+GGG | - | chr3_1:77820945-77820964 | Msa0377390:CDS | 25.0% |
| ! | TTGTAATTAGTGAAATACTG+AGG | - | chr3_1:77821178-77821197 | Msa0377390:intron | 25.0% |
| ! | TGTAATTAGTGAAATACTGA+GGG | - | chr3_1:77821179-77821198 | Msa0377390:intron | 25.0% |
| ! | TGTTCTTTGTGTCTAAATTA+CGG | + | chr3_1:77821317-77821336 | None:intergenic | 25.0% |
| !!! | TTATGATTTTGGGTGTATAA+AGG | + | chr3_1:77821375-77821394 | None:intergenic | 25.0% |
| ! | TACACCCAAAATCATAATAA+TGG | - | chr3_1:77821378-77821397 | Msa0377390:CDS | 25.0% |
| ! | CTGTGATAATCAACATAAAT+GGG | + | chr3_1:77821914-77821933 | None:intergenic | 25.0% |
| ! | ACTGTGATAATCAACATAAA+TGG | + | chr3_1:77821915-77821934 | None:intergenic | 25.0% |
| ! | CAAAATATTAACGCACAAAA+AGG | + | chr3_1:77822330-77822349 | None:intergenic | 25.0% |
| ! | TGCAATAAAAATAATGACCA+AGG | + | chr3_1:77822389-77822408 | None:intergenic | 25.0% |
| !!! | GAAGTAAGGCTTAATTTTTT+TGG | - | chr3_1:77823024-77823043 | Msa0377390:intron | 25.0% |
| ! | AAGATAATTAGCAATTGTTC+AGG | + | chr3_1:77823211-77823230 | None:intergenic | 25.0% |
| !! | TTTTTACTTTATACAGGGTT+TGG | - | chr3_1:77823245-77823264 | Msa0377390:intron | 25.0% |
| ! | TATCTTATTAATAAGGACCT+CGG | - | chr3_1:77823392-77823411 | Msa0377390:intron | 25.0% |
| !! | TTTAAGACATGATAAAGGTA+TGG | + | chr3_1:77823479-77823498 | None:intergenic | 25.0% |
| ! | TACCTGAAACATAAAAATGA+AGG | + | chr3_1:77823671-77823690 | None:intergenic | 25.0% |
| ! | ATCTTATTATCAATGCAGTT+TGG | - | chr3_1:77823928-77823947 | Msa0377390:intron | 25.0% |
| ! | GTTCTAATGATATTGCAAAT+AGG | - | chr3_1:77824221-77824240 | Msa0377390:intron | 25.0% |
| ! | GCTTATTCATAACATCAAAA+TGG | + | chr3_1:77824297-77824316 | None:intergenic | 25.0% |
| ! | AATTCAGAATGAGTTTGTAA+TGG | - | chr3_1:77824342-77824361 | Msa0377390:CDS | 25.0% |
| TTGGGTTTGAATTGGATAAT+TGG | + | chr3_1:77819090-77819109 | None:intergenic | 30.0% | |
| TGTAAATGTATAGAGGGAAA+GGG | + | chr3_1:77819376-77819395 | None:intergenic | 30.0% | |
| ATGTAAATGTATAGAGGGAA+AGG | + | chr3_1:77819377-77819396 | None:intergenic | 30.0% | |
| CTCTGAATGTAAATGTATAG+AGG | + | chr3_1:77819383-77819402 | None:intergenic | 30.0% | |
| ! | GTTCATGAGTTAGTTTATAG+CGG | - | chr3_1:77819510-77819529 | Msa0377390:CDS | 30.0% |
| ! | GTCAAGTTTGAACTCTTTTA+AGG | - | chr3_1:77819854-77819873 | Msa0377390:intron | 30.0% |
| ATAAGATGAGATAAGCAAAC+CGG | + | chr3_1:77820074-77820093 | None:intergenic | 30.0% | |
| GATGACTAGAAAACTGTTAA+AGG | + | chr3_1:77820353-77820372 | None:intergenic | 30.0% | |
| !! | TTTTCTAGTCATCTCATCAT+TGG | - | chr3_1:77820360-77820379 | Msa0377390:intron | 30.0% |
| !! | TGAGAAGACTAGTTTCATAA+TGG | - | chr3_1:77820452-77820471 | Msa0377390:intron | 30.0% |
| TTCATAATGGTGAATTGCAA+AGG | - | chr3_1:77820465-77820484 | Msa0377390:intron | 30.0% | |
| ACTTTATGTTAACTTTCCTC+AGG | - | chr3_1:77820597-77820616 | Msa0377390:CDS | 30.0% | |
| TCAATGTTTCACTTTAGTGA+TGG | - | chr3_1:77820753-77820772 | Msa0377390:CDS | 30.0% | |
| CAGAGAAAGTTTCTATAACT+TGG | + | chr3_1:77820943-77820962 | None:intergenic | 30.0% | |
| GTTATAGAAACTTTCTCTGA+AGG | - | chr3_1:77820944-77820963 | Msa0377390:CDS | 30.0% | |
| TCCATTTCTGTTCAACAATT+GGG | - | chr3_1:77821008-77821027 | Msa0377390:intron | 30.0% | |
| GTAATTAGTGAAATACTGAG+GGG | - | chr3_1:77821180-77821199 | Msa0377390:intron | 30.0% | |
| ! | TTGAACATTGAGAATTTGCT+TGG | - | chr3_1:77821212-77821231 | Msa0377390:intron | 30.0% |
| CTTGGAATTTCTTTCATAAG+AGG | - | chr3_1:77821230-77821249 | Msa0377390:intron | 30.0% | |
| ATTCCTTTCGTAGAATTTAG+AGG | + | chr3_1:77821280-77821299 | None:intergenic | 30.0% | |
| !! | ATTTCTTTTGAGAAATGGGT+AGG | - | chr3_1:77821409-77821428 | Msa0377390:CDS | 30.0% |
| TCTGTCAAAACAACTCATTT+GGG | - | chr3_1:77821500-77821519 | Msa0377390:intron | 30.0% | |
| ! | TTTGGGAATTTTCTTTTGCA+AGG | - | chr3_1:77821517-77821536 | Msa0377390:intron | 30.0% |
| ATATCTTTAATGTTGTAGGC+TGG | - | chr3_1:77821545-77821564 | Msa0377390:CDS | 30.0% | |
| !! | TATCTTCTAAAGCTACAAGA+TGG | + | chr3_1:77821657-77821676 | None:intergenic | 30.0% |
| AGTAAGGGAATCAAGATAAT+GGG | - | chr3_1:77821881-77821900 | Msa0377390:CDS | 30.0% | |
| ATCATCTCCACTTATTTATC+TGG | - | chr3_1:77822058-77822077 | Msa0377390:intron | 30.0% | |
| TATGGCTGAAGATTTATCAT+GGG | + | chr3_1:77822177-77822196 | None:intergenic | 30.0% | |
| TTATGGCTGAAGATTTATCA+TGG | + | chr3_1:77822178-77822197 | None:intergenic | 30.0% | |
| GAACTAAAATGACATATCAG+GGG | + | chr3_1:77822301-77822320 | None:intergenic | 30.0% | |
| GGAACTAAAATGACATATCA+GGG | + | chr3_1:77822302-77822321 | None:intergenic | 30.0% | |
| AGGAACTAAAATGACATATC+AGG | + | chr3_1:77822303-77822322 | None:intergenic | 30.0% | |
| ! | TTTGTGCGTTAATATTTTGC+CGG | - | chr3_1:77822331-77822350 | Msa0377390:intron | 30.0% |
| CAAGGAAAAATGATGAAAAG+TGG | + | chr3_1:77822371-77822390 | None:intergenic | 30.0% | |
| !! | CACTTTTCATCATTTTTCCT+TGG | - | chr3_1:77822369-77822388 | Msa0377390:intron | 30.0% |
| ATATTGAAGCACATTGTTGA+AGG | - | chr3_1:77822430-77822449 | Msa0377390:intron | 30.0% | |
| ATCATTAATCTGAATGAGCA+AGG | + | chr3_1:77822459-77822478 | None:intergenic | 30.0% | |
| AGGATATGTATGACGAATTT+AGG | - | chr3_1:77822587-77822606 | Msa0377390:intron | 30.0% | |
| CAAAGGTAGAACAAAATAAC+AGG | + | chr3_1:77822778-77822797 | None:intergenic | 30.0% | |
| TGTTCTACCTTTGATCTATT+TGG | - | chr3_1:77822785-77822804 | Msa0377390:intron | 30.0% | |
| TCATGTATGAATTGAAAGCA+AGG | + | chr3_1:77822988-77823007 | None:intergenic | 30.0% | |
| !! | TTTGGTTCTTTATTTATGGC+AGG | - | chr3_1:77823042-77823061 | Msa0377390:intron | 30.0% |
| ! | TTGGTTCTTTATTTATGGCA+GGG | - | chr3_1:77823043-77823062 | Msa0377390:intron | 30.0% |
| ATTAATCATTACCAAACTGG+AGG | + | chr3_1:77823129-77823148 | None:intergenic | 30.0% | |
| GCAATTAATCATTACCAAAC+TGG | + | chr3_1:77823132-77823151 | None:intergenic | 30.0% | |
| TCAAACATGAGATCACTTTA+GGG | + | chr3_1:77823185-77823204 | None:intergenic | 30.0% | |
| ! | TCACATGTGATTTCTCTTTT+TGG | + | chr3_1:77823583-77823602 | None:intergenic | 30.0% |
| CTGAAACATAAAAATGAAGG+AGG | + | chr3_1:77823668-77823687 | None:intergenic | 30.0% | |
| !! | CTCCTTCATTTTTATGTTTC+AGG | - | chr3_1:77823666-77823685 | Msa0377390:intron | 30.0% |
| TATCAATGCAGTTTGGAAAT+TGG | - | chr3_1:77823935-77823954 | Msa0377390:intron | 30.0% | |
| ATCAATGCAGTTTGGAAATT+GGG | - | chr3_1:77823936-77823955 | Msa0377390:intron | 30.0% | |
| AAAGAGATGCTTTCAATGTA+TGG | - | chr3_1:77824018-77824037 | Msa0377390:intron | 30.0% | |
| !! | GATAATTGGTGATGATGATG+TGG | + | chr3_1:77819076-77819095 | None:intergenic | 35.0% |
| GTGAAGAATTGGGTTTGAAT+TGG | + | chr3_1:77819098-77819117 | None:intergenic | 35.0% | |
| AAGGAAAGTGGTGAAGAATT+GGG | + | chr3_1:77819108-77819127 | None:intergenic | 35.0% | |
| GAAGATTTGCCGTCAAATTA+CGG | - | chr3_1:77819186-77819205 | Msa0377390:three_prime_UTR | 35.0% | |
| CAATCTTCTCCGTAATTTGA+CGG | + | chr3_1:77819198-77819217 | None:intergenic | 35.0% | |
| AAGCCTTTCGTTTCATTGAT+TGG | - | chr3_1:77819316-77819335 | Msa0377390:three_prime_UTR | 35.0% | |
| GTAAATGTATAGAGGGAAAG+GGG | + | chr3_1:77819375-77819394 | None:intergenic | 35.0% | |
| ATTTACATTCAGAGCCTGTT+TGG | - | chr3_1:77819389-77819408 | Msa0377390:three_prime_UTR | 35.0% | |
| TCAAATAAGCTGATCCAAAC+AGG | + | chr3_1:77819406-77819425 | None:intergenic | 35.0% | |
| !!! | TGAACTCTTTTAAGGCAATG+CGG | - | chr3_1:77819862-77819881 | Msa0377390:intron | 35.0% |
| TTCAGTTGTTGCTAATCTCA+AGG | - | chr3_1:77820137-77820156 | Msa0377390:intron | 35.0% | |
| ATCATCAAATTACTCAGGGA+TGG | + | chr3_1:77820292-77820311 | None:intergenic | 35.0% | |
| AGTGTCTCACTTGATATGTT+AGG | + | chr3_1:77820688-77820707 | None:intergenic | 35.0% | |
| ATTGAAGCTAACAGGAAACA+TGG | + | chr3_1:77820738-77820757 | None:intergenic | 35.0% | |
| AGTGAAACATTGAAGCTAAC+AGG | + | chr3_1:77820746-77820765 | None:intergenic | 35.0% | |
| CTCCATTTCTGTTCAACAAT+TGG | - | chr3_1:77821007-77821026 | Msa0377390:intron | 35.0% | |
| CTAGATTGAATTGATTGCCT+TGG | + | chr3_1:77821034-77821053 | None:intergenic | 35.0% | |
| TACTTGTGAGAACTTCTTAC+TGG | - | chr3_1:77821073-77821092 | Msa0377390:intron | 35.0% | |
| GGATTATGTGATTCAGAAGT+AGG | - | chr3_1:77821129-77821148 | Msa0377390:intron | 35.0% | |
| TATGTGATTCAGAAGTAGGA+TGG | - | chr3_1:77821133-77821152 | Msa0377390:intron | 35.0% | |
| TAAGAGGATAGTCTGAACAT+TGG | - | chr3_1:77821246-77821265 | Msa0377390:intron | 35.0% | |
| AAGAGGATAGTCTGAACATT+GGG | - | chr3_1:77821247-77821266 | Msa0377390:intron | 35.0% | |
| GATCCTCTAAATTCTACGAA+AGG | - | chr3_1:77821274-77821293 | Msa0377390:intron | 35.0% | |
| TAGGATATCTCTACTCTTGT+GGG | - | chr3_1:77821428-77821447 | Msa0377390:intron | 35.0% | |
| TTCAATCAACTTTCCAAGTG+AGG | - | chr3_1:77821477-77821496 | Msa0377390:intron | 35.0% | |
| GTCTGTCAAAACAACTCATT+TGG | - | chr3_1:77821499-77821518 | Msa0377390:intron | 35.0% | |
| !!! | ATGGCGGTTTTTTAAAGGTT+CGG | + | chr3_1:77821638-77821657 | None:intergenic | 35.0% |
| !!! | ACAAGATGGCGGTTTTTTAA+AGG | + | chr3_1:77821643-77821662 | None:intergenic | 35.0% |
| GAGTAAGGGAATCAAGATAA+TGG | - | chr3_1:77821880-77821899 | Msa0377390:CDS | 35.0% | |
| ATTATCACAGTGCAGATGTT+TGG | - | chr3_1:77821924-77821943 | Msa0377390:CDS | 35.0% | |
| TTATCACAGTGCAGATGTTT+GGG | - | chr3_1:77821925-77821944 | Msa0377390:CDS | 35.0% | |
| AAATAAGAACCAGTTTGCAC+TGG | - | chr3_1:77821949-77821968 | Msa0377390:intron | 35.0% | |
| ! | GTCTAAACCAACCTCTTTTT+CGG | - | chr3_1:77822010-77822029 | Msa0377390:intron | 35.0% |
| TACAAAATGCTCCGAAAAAG+AGG | + | chr3_1:77822024-77822043 | None:intergenic | 35.0% | |
| TGTTCTGCCAGATAAATAAG+TGG | + | chr3_1:77822068-77822087 | None:intergenic | 35.0% | |
| ACTTATTTATCTGGCAGAAC+AGG | - | chr3_1:77822067-77822086 | Msa0377390:intron | 35.0% | |
| TTAACGCACAAAAAGGTGAA+AGG | + | chr3_1:77822323-77822342 | None:intergenic | 35.0% | |
| ! | AGTGGTTTGTAGAATCAATC+CGG | + | chr3_1:77822353-77822372 | None:intergenic | 35.0% |
| TGAATATCCTTCTTTCTCCA+TGG | + | chr3_1:77822539-77822558 | None:intergenic | 35.0% | |
| TGGAGAAAGAAGGATATTCA+TGG | - | chr3_1:77822539-77822558 | Msa0377390:intron | 35.0% | |
| AGAAAGAAGGATATTCATGG+TGG | - | chr3_1:77822542-77822561 | Msa0377390:intron | 35.0% | |
| ! | TTTAGGATTGACCACTTTAG+AGG | - | chr3_1:77822604-77822623 | Msa0377390:intron | 35.0% |
| !! | TTAGAGGATTTGCTGGATAT+TGG | - | chr3_1:77822620-77822639 | Msa0377390:intron | 35.0% |
| !! | TAGAGGATTTGCTGGATATT+GGG | - | chr3_1:77822621-77822640 | Msa0377390:intron | 35.0% |
| AAACATCACATCGAGCAATA+AGG | + | chr3_1:77822684-77822703 | None:intergenic | 35.0% | |
| AGTTTGGCCAAATAGATCAA+AGG | + | chr3_1:77822795-77822814 | None:intergenic | 35.0% | |
| TAATATCACAGCAGAAGACT+TGG | - | chr3_1:77822899-77822918 | Msa0377390:intron | 35.0% | |
| ! | ATTGCTTCATTAGTCTCGTT+AGG | - | chr3_1:77822961-77822980 | Msa0377390:intron | 35.0% |
| ! | TTGCTTCATTAGTCTCGTTA+GGG | - | chr3_1:77822962-77822981 | Msa0377390:intron | 35.0% |
| GTGCAACTAAGAAAATCCAT+TGG | - | chr3_1:77823085-77823104 | Msa0377390:intron | 35.0% | |
| CTCAAACATGAGATCACTTT+AGG | + | chr3_1:77823186-77823205 | None:intergenic | 35.0% | |
| TTACTTTATACAGGGTTTGG+AGG | - | chr3_1:77823248-77823267 | Msa0377390:intron | 35.0% | |
| ! | TGCAATCAAGTTGTCTATAC+AGG | - | chr3_1:77823308-77823327 | Msa0377390:intron | 35.0% |
| ! | GCAATCAAGTTGTCTATACA+GGG | - | chr3_1:77823309-77823328 | Msa0377390:intron | 35.0% |
| CAGGATTTAATATCGTTGAC+AGG | + | chr3_1:77823510-77823529 | None:intergenic | 35.0% | |
| TCACTACCAAATATCGTCTA+TGG | + | chr3_1:77823609-77823628 | None:intergenic | 35.0% | |
| CCATGAAATATCATCTTCTC+CGG | + | chr3_1:77823713-77823732 | None:intergenic | 35.0% | |
| CGGAGAAGATGATATTTCAT+GGG | - | chr3_1:77823711-77823730 | Msa0377390:CDS | 35.0% | |
| ATACCTATGCAAGATGTTCT+TGG | - | chr3_1:77823778-77823797 | Msa0377390:intron | 35.0% | |
| TCAATGCAGTTTGGAAATTG+GGG | - | chr3_1:77823937-77823956 | Msa0377390:intron | 35.0% | |
| CTTTGACAAGTTAGATAGAG+AGG | - | chr3_1:77823984-77824003 | Msa0377390:intron | 35.0% | |
| !! | TGAAAGCATCTCTTTAAGTC+TGG | + | chr3_1:77824013-77824032 | None:intergenic | 35.0% |
| GAGATTTGACATTTCAAAGC+CGG | + | chr3_1:77824044-77824063 | None:intergenic | 35.0% | |
| ! | AAGAAGAGTTTGTTTGCCAA+CGG | - | chr3_1:77824076-77824095 | Msa0377390:intron | 35.0% |
| AACTTGGGAATTAAAACTGC+AGG | + | chr3_1:77824129-77824148 | None:intergenic | 35.0% | |
| !!! | AGTTTTAATTCCCAAGTTGC+TGG | - | chr3_1:77824131-77824150 | Msa0377390:intron | 35.0% |
| TGCATTTCTTGAACAACACA+CGG | + | chr3_1:77824179-77824198 | None:intergenic | 35.0% | |
| ! | TGTGTTGTTCAAGAAATGCA+AGG | - | chr3_1:77824179-77824198 | Msa0377390:intron | 35.0% |
| TTCAAGAAATGCAAGGAAGT+TGG | - | chr3_1:77824186-77824205 | Msa0377390:intron | 35.0% | |
| TAGGTAATGCATGCTTGTAT+TGG | - | chr3_1:77824240-77824259 | Msa0377390:intron | 35.0% | |
| TCATAACATCAAAATGGCTC+AGG | + | chr3_1:77824291-77824310 | None:intergenic | 35.0% | |
| GAAGGAAAGTGGTGAAGAAT+TGG | + | chr3_1:77819109-77819128 | None:intergenic | 40.0% | |
| GGTGAATTGAGTTAAGGAAG+TGG | + | chr3_1:77819160-77819179 | None:intergenic | 40.0% | |
| TCCTTAACTCAATTCACCGT+CGG | - | chr3_1:77819162-77819181 | Msa0377390:three_prime_UTR | 40.0% | |
| CGTCAAATTACGGAGAAGAT+TGG | - | chr3_1:77819196-77819215 | Msa0377390:three_prime_UTR | 40.0% | |
| !! | TAGGGACTTTGAAACGAAGT+GGG | + | chr3_1:77819273-77819292 | None:intergenic | 40.0% |
| ACTTCGTTTCAAAGTCCCTA+CGG | - | chr3_1:77819273-77819292 | Msa0377390:three_prime_UTR | 40.0% | |
| TTTCAAAGTCCCTACGGTAT+CGG | - | chr3_1:77819279-77819298 | Msa0377390:three_prime_UTR | 40.0% | |
| GAGCCAATCAATGAAACGAA+AGG | + | chr3_1:77819322-77819341 | None:intergenic | 40.0% | |
| TCCAAACGTGCAATATTTGC+AGG | - | chr3_1:77819739-77819758 | Msa0377390:CDS | 40.0% | |
| ACCTGCAAATATTGCACGTT+TGG | + | chr3_1:77819743-77819762 | None:intergenic | 40.0% | |
| !!! | GCTTTTTAGGATGCGAATTG+TGG | - | chr3_1:77819896-77819915 | Msa0377390:intron | 40.0% |
| GATTTCTCTTGAAGAGCTTG+TGG | - | chr3_1:77819931-77819950 | Msa0377390:CDS | 40.0% | |
| ACTGTTAAAGGTAATAGGCC+CGG | + | chr3_1:77820341-77820360 | None:intergenic | 40.0% | |
| ! | TGGAATTTTGTCACGCAACA+TGG | - | chr3_1:77820380-77820399 | Msa0377390:CDS | 40.0% |
| AGAGGCTCATTTCAAGCAAA+GGG | - | chr3_1:77820626-77820645 | Msa0377390:CDS | 40.0% | |
| ! | AACAGCTTGAGAATTTTCGC+AGG | - | chr3_1:77820659-77820678 | Msa0377390:intron | 40.0% |
| ! | ACAGCTTGAGAATTTTCGCA+GGG | - | chr3_1:77820660-77820679 | Msa0377390:intron | 40.0% |
| GCCCAATTGTTGAACAGAAA+TGG | + | chr3_1:77821012-77821031 | None:intergenic | 40.0% | |
| GATAGTCTGAACATTGGGTA+GGG | - | chr3_1:77821252-77821271 | Msa0377390:intron | 40.0% | |
| GTAGGATATCTCTACTCTTG+TGG | - | chr3_1:77821427-77821446 | Msa0377390:intron | 40.0% | |
| !!! | TTGTTTTGACAGACCTCACT+TGG | + | chr3_1:77821493-77821512 | None:intergenic | 40.0% |
| ACAGTTTGAACACACTCAGT+TGG | - | chr3_1:77821602-77821621 | Msa0377390:CDS | 40.0% | |
| !!! | TGGCGGTTTTTTAAAGGTTC+GGG | + | chr3_1:77821637-77821656 | None:intergenic | 40.0% |
| !! | CTTCTAAAGCTACAAGATGG+CGG | + | chr3_1:77821654-77821673 | None:intergenic | 40.0% |
| ! | CTATAAGCAGGGCATTCAAT+GGG | + | chr3_1:77821750-77821769 | None:intergenic | 40.0% |
| !! | CCTTTGGAACAAGAACTGTT+GGG | + | chr3_1:77821831-77821850 | None:intergenic | 40.0% |
| AGTTCTTGTTCCAAAGGCAA+TGG | - | chr3_1:77821834-77821853 | Msa0377390:CDS | 40.0% | |
| AAATGCTCCGAAAAAGAGGT+TGG | + | chr3_1:77822020-77822039 | None:intergenic | 40.0% | |
| TTTATCTGGCAGAACAGGAA+AGG | - | chr3_1:77822072-77822091 | Msa0377390:intron | 40.0% | |
| ATGGCATTCCAATCATACAG+GGG | + | chr3_1:77822520-77822539 | None:intergenic | 40.0% | |
| CATGGCATTCCAATCATACA+GGG | + | chr3_1:77822521-77822540 | None:intergenic | 40.0% | |
| ! | ATCCAGCAAATCCTCTAAAG+TGG | + | chr3_1:77822618-77822637 | None:intergenic | 40.0% |
| GCAGAAGCAAAAGTAGCTAT+GGG | - | chr3_1:77822732-77822751 | Msa0377390:intron | 40.0% | |
| AATGATTGATAGGTAGGACC+TGG | - | chr3_1:77822834-77822853 | Msa0377390:CDS | 40.0% | |
| TCTGGAAATGGCATCAAAGA+AGG | + | chr3_1:77822865-77822884 | None:intergenic | 40.0% | |
| ATTAATCCTTCCAACAGCTC+TGG | + | chr3_1:77822883-77822902 | None:intergenic | 40.0% | |
| TAGGGTATGATGCTGAAGAA+TGG | + | chr3_1:77823167-77823186 | None:intergenic | 40.0% | |
| CGTGATTATGAGGCAAATGA+GGG | + | chr3_1:77823286-77823305 | None:intergenic | 40.0% | |
| TCGTGATTATGAGGCAAATG+AGG | + | chr3_1:77823287-77823306 | None:intergenic | 40.0% | |
| TGATTGCACTCGTGATTATG+AGG | + | chr3_1:77823296-77823315 | None:intergenic | 40.0% | |
| GCAGAAACACATATGTTGTC+AGG | + | chr3_1:77823529-77823548 | None:intergenic | 40.0% | |
| ! | TGTGTTTCTGCTACAGATTC+AGG | - | chr3_1:77823538-77823557 | Msa0377390:CDS | 40.0% |
| ! | GTGTTTCTGCTACAGATTCA+GGG | - | chr3_1:77823539-77823558 | Msa0377390:CDS | 40.0% |
| TGAGTGCCATAGACGATATT+TGG | - | chr3_1:77823600-77823619 | Msa0377390:intron | 40.0% | |
| CCGGAGAAGATGATATTTCA+TGG | - | chr3_1:77823710-77823729 | Msa0377390:CDS | 40.0% | |
| !! | TATTGCTGTTTGAGCAACAG+AGG | + | chr3_1:77823758-77823777 | None:intergenic | 40.0% |
| AGTCCAAGAACATCTTGCAT+AGG | + | chr3_1:77823784-77823803 | None:intergenic | 40.0% | |
| ATGCAAGATGTTCTTGGACT+TGG | - | chr3_1:77823784-77823803 | Msa0377390:intron | 40.0% | |
| TGCAAGATGTTCTTGGACTT+GGG | - | chr3_1:77823785-77823804 | Msa0377390:intron | 40.0% | |
| AGTTGCAGGAATATTCATCC+TGG | + | chr3_1:77823818-77823837 | None:intergenic | 40.0% | |
| GATGAATATTCCTGCAACTC+AGG | - | chr3_1:77823819-77823838 | Msa0377390:intron | 40.0% | |
| ! | TGAACTTTTACCTGAGTTGC+AGG | + | chr3_1:77823832-77823851 | None:intergenic | 40.0% |
| TGTCAAAGCTGACAGAACTT+GGG | + | chr3_1:77823972-77823991 | None:intergenic | 40.0% | |
| TTGTCAAAGCTGACAGAACT+TGG | + | chr3_1:77823973-77823992 | None:intergenic | 40.0% | |
| AGATGCTTTCAATGTATGGC+CGG | - | chr3_1:77824022-77824041 | Msa0377390:intron | 40.0% | |
| AGATATTGCTCCAGCAACTT+GGG | + | chr3_1:77824144-77824163 | None:intergenic | 40.0% | |
| AAGATATTGCTCCAGCAACT+TGG | + | chr3_1:77824145-77824164 | None:intergenic | 40.0% | |
| GCATTTCTTGAACAACACAC+GGG | + | chr3_1:77824178-77824197 | None:intergenic | 40.0% | |
| GGTGAATTCTCAGATCACTA+CGG | + | chr3_1:77824270-77824289 | None:intergenic | 40.0% | |
| TCACAACACTGTCTTTCCCA+CGG | - | chr3_1:77819046-77819065 | Msa0377390:three_prime_UTR | 45.0% | |
| ACCGACGGTGAATTGAGTTA+AGG | + | chr3_1:77819166-77819185 | None:intergenic | 45.0% | |
| AGTGGGATGGAGAAGAATAC+CGG | + | chr3_1:77819256-77819275 | None:intergenic | 45.0% | |
| !! | GACTTTGAAACGAAGTGGGA+TGG | + | chr3_1:77819269-77819288 | None:intergenic | 45.0% |
| !! | GTAGGGACTTTGAAACGAAG+TGG | + | chr3_1:77819274-77819293 | None:intergenic | 45.0% |
| ! | ATTGATTGGCTCCACCAAAC+TGG | - | chr3_1:77819330-77819349 | Msa0377390:three_prime_UTR | 45.0% |
| TTCTCTTGAAGAGCTTGTGG+CGG | - | chr3_1:77819934-77819953 | Msa0377390:CDS | 45.0% | |
| ! | CGGTTGTTTCATGCATGCAA+GGG | + | chr3_1:77820321-77820340 | None:intergenic | 45.0% |
| CCTTGCATGCATGAAACAAC+CGG | - | chr3_1:77820319-77820338 | Msa0377390:intron | 45.0% | |
| CTTGCATGCATGAAACAACC+GGG | - | chr3_1:77820320-77820339 | Msa0377390:intron | 45.0% | |
| GAGAGGCTCATTTCAAGCAA+AGG | - | chr3_1:77820625-77820644 | Msa0377390:CDS | 45.0% | |
| GAGGCTCATTTCAAGCAAAG+GGG | - | chr3_1:77820627-77820646 | Msa0377390:CDS | 45.0% | |
| TCTGTTCAACAATTGGGCCA+AGG | - | chr3_1:77821014-77821033 | Msa0377390:intron | 45.0% | |
| ACTTCTTACTGGTGCTTGCA+CGG | - | chr3_1:77821084-77821103 | Msa0377390:intron | 45.0% | |
| GGATAGTCTGAACATTGGGT+AGG | - | chr3_1:77821251-77821270 | Msa0377390:intron | 45.0% | |
| GATATCTCTACTCTTGTGGG+TGG | - | chr3_1:77821431-77821450 | Msa0377390:intron | 45.0% | |
| ! | ACACACTCAGTTGGTACGAT+TGG | - | chr3_1:77821611-77821630 | Msa0377390:CDS | 45.0% |
| ! | GCTATAAGCAGGGCATTCAA+TGG | + | chr3_1:77821751-77821770 | None:intergenic | 45.0% |
| AACACCTCTGGCTATAAGCA+GGG | + | chr3_1:77821761-77821780 | None:intergenic | 45.0% | |
| CGATACATCAAGAACACCTC+TGG | + | chr3_1:77821773-77821792 | None:intergenic | 45.0% | |
| CCCAACAGTTCTTGTTCCAA+AGG | - | chr3_1:77821828-77821847 | Msa0377390:CDS | 45.0% | |
| !! | GCCTTTGGAACAAGAACTGT+TGG | + | chr3_1:77821832-77821851 | None:intergenic | 45.0% |
| GAACTTTCTGCCATTGCCTT+TGG | + | chr3_1:77821847-77821866 | None:intergenic | 45.0% | |
| GACAACTAACCAGTGCAAAC+TGG | + | chr3_1:77821961-77821980 | None:intergenic | 45.0% | |
| ! | GGCTTTCCTCTTTTAGTGAG+TGG | - | chr3_1:77822093-77822112 | Msa0377390:intron | 45.0% |
| GAAAAAGCCCCCTGTATGAT+TGG | - | chr3_1:77822509-77822528 | Msa0377390:intron | 45.0% | |
| TGGCATTCCAATCATACAGG+GGG | + | chr3_1:77822519-77822538 | None:intergenic | 45.0% | |
| CCATGGCATTCCAATCATAC+AGG | + | chr3_1:77822522-77822541 | None:intergenic | 45.0% | |
| CCTGTATGATTGGAATGCCA+TGG | - | chr3_1:77822519-77822538 | Msa0377390:intron | 45.0% | |
| TGGAATGCCATGGAGAAAGA+AGG | - | chr3_1:77822529-77822548 | Msa0377390:intron | 45.0% | |
| ! | GACCACTTTAGAGGATTTGC+TGG | - | chr3_1:77822613-77822632 | Msa0377390:intron | 45.0% |
| CGCAGAAGCAAAAGTAGCTA+TGG | - | chr3_1:77822731-77822750 | Msa0377390:intron | 45.0% | |
| GAAGCAAAAGTAGCTATGGG+TGG | - | chr3_1:77822735-77822754 | Msa0377390:intron | 45.0% | |
| AAGTAGCTATGGGTGGAAAG+TGG | - | chr3_1:77822742-77822761 | Msa0377390:intron | 45.0% | |
| GCATCAAAGAAGGATGTTCC+AGG | + | chr3_1:77822855-77822874 | None:intergenic | 45.0% | |
| ACACAACTCTTGCCGAAGTA+AGG | - | chr3_1:77823010-77823029 | Msa0377390:intron | 45.0% | |
| CTTTATACAGGGTTTGGAGG+TGG | - | chr3_1:77823251-77823270 | Msa0377390:intron | 45.0% | |
| AGGGACTCATGACAATGACA+CGG | - | chr3_1:77823328-77823347 | Msa0377390:intron | 45.0% | |
| GACATCTACAAAGCATACCG+AGG | + | chr3_1:77823412-77823431 | None:intergenic | 45.0% | |
| TTCTGCTACAGATTCAGGGT+TGG | - | chr3_1:77823543-77823562 | Msa0377390:CDS | 45.0% | |
| TGCAGTTTGGAAATTGGGGA+TGG | - | chr3_1:77823941-77823960 | Msa0377390:intron | 45.0% | |
| AGTTTGGAAATTGGGGATGG+AGG | - | chr3_1:77823944-77823963 | Msa0377390:intron | 45.0% | |
| GTTTGGAAATTGGGGATGGA+GGG | - | chr3_1:77823945-77823964 | Msa0377390:intron | 45.0% | |
| ! | AGAGTTTGTTTGCCAACGGA+AGG | - | chr3_1:77824080-77824099 | Msa0377390:intron | 45.0% |
| CTACTTAAGCTTCCTTCCGT+TGG | + | chr3_1:77824095-77824114 | None:intergenic | 45.0% | |
| !! | TTTATAAATATTTAGTAAAA+CGG | - | chr3_1:77819542-77819561 | Msa0377390:CDS | 5.0% |
| ! | ATGATGATGTGGTCCACCGT+GGG | + | chr3_1:77819065-77819084 | None:intergenic | 50.0% |
| AAGACGAAGAAGCAGCACGA+GGG | + | chr3_1:77819131-77819150 | None:intergenic | 50.0% | |
| AAAGACGAAGAAGCAGCACG+AGG | + | chr3_1:77819132-77819151 | None:intergenic | 50.0% | |
| !! | TCGTGCTGCTTCTTCGTCTT+TGG | - | chr3_1:77819131-77819150 | Msa0377390:three_prime_UTR | 50.0% |
| TGACGGCAAATCTTCACCGA+CGG | + | chr3_1:77819181-77819200 | None:intergenic | 50.0% | |
| TCTTCTGCGGAGATGAAGGT+CGG | + | chr3_1:77819232-77819251 | None:intergenic | 50.0% | |
| !! | GAAGAATACCGGCTCTTCTG+CGG | + | chr3_1:77819245-77819264 | None:intergenic | 50.0% |
| AAAGGGAGCAACCAGTTTGG+TGG | + | chr3_1:77819344-77819363 | None:intergenic | 50.0% | |
| ACCAAACTGGTTGCTCCCTT+TGG | - | chr3_1:77819343-77819362 | Msa0377390:three_prime_UTR | 50.0% | |
| TAAGGAGAACCCCCTTCATC+AGG | + | chr3_1:77819782-77819801 | None:intergenic | 50.0% | |
| TTGAAAACCTGGCCTGCGTA+AGG | + | chr3_1:77819800-77819819 | None:intergenic | 50.0% | |
| !! | TTGAAGAGCTTGTGGCGGAT+GGG | - | chr3_1:77819939-77819958 | Msa0377390:CDS | 50.0% |
| ! | CCGGTTGTTTCATGCATGCA+AGG | + | chr3_1:77820322-77820341 | None:intergenic | 50.0% |
| GGACCACAAGTGCTTATCTG+TGG | - | chr3_1:77820486-77820505 | Msa0377390:intron | 50.0% | |
| CCTCCACAGATAAGCACTTG+TGG | + | chr3_1:77820492-77820511 | None:intergenic | 50.0% | |
| CCACAAGTGCTTATCTGTGG+AGG | - | chr3_1:77820489-77820508 | Msa0377390:intron | 50.0% | |
| AATGCCCTGCTTATAGCCAG+AGG | - | chr3_1:77821754-77821773 | Msa0377390:intron | 50.0% | |
| GAACACCTCTGGCTATAAGC+AGG | + | chr3_1:77821762-77821781 | None:intergenic | 50.0% | |
| TCGCGACTATGCACAGAGTA+AGG | - | chr3_1:77821865-77821884 | Msa0377390:CDS | 50.0% | |
| CGCGACTATGCACAGAGTAA+GGG | - | chr3_1:77821866-77821885 | Msa0377390:CDS | 50.0% | |
| GGCACACCACTCACTAAAAG+AGG | + | chr3_1:77822102-77822121 | None:intergenic | 50.0% | |
| GTTTCGCTGAATGCATCAGG+AGG | + | chr3_1:77822123-77822142 | None:intergenic | 50.0% | |
| CCAGTTTCGCTGAATGCATC+AGG | + | chr3_1:77822126-77822145 | None:intergenic | 50.0% | |
| CCTGATGCATTCAGCGAAAC+TGG | - | chr3_1:77822123-77822142 | Msa0377390:intron | 50.0% | |
| AGCTATGGGTGGAAAGTGGA+AGG | - | chr3_1:77822746-77822765 | Msa0377390:intron | 50.0% | |
| ! | GATGCCATTTCCAGAGCTGT+TGG | - | chr3_1:77822870-77822889 | Msa0377390:CDS | 50.0% |
| !! | CCTTCCAACAGCTCTGGAAA+TGG | + | chr3_1:77822877-77822896 | None:intergenic | 50.0% |
| CCATTTCCAGAGCTGTTGGA+AGG | - | chr3_1:77822874-77822893 | Msa0377390:CDS | 50.0% | |
| ATGGCAGGGAGTTATCACTG+AGG | - | chr3_1:77823057-77823076 | Msa0377390:intron | 50.0% | |
| AGAAAATCCATTGGAGCCCC+TGG | - | chr3_1:77823094-77823113 | Msa0377390:intron | 50.0% | |
| TGCTACAGATTCAGGGTTGG+TGG | - | chr3_1:77823546-77823565 | Msa0377390:CDS | 50.0% | |
| ! | GCTACAGATTCAGGGTTGGT+GGG | - | chr3_1:77823547-77823566 | Msa0377390:CDS | 50.0% |
| CAACACTGTCTTTCCCACGG+TGG | - | chr3_1:77819049-77819068 | Msa0377390:three_prime_UTR | 55.0% | |
| ! | GATGATGATGTGGTCCACCG+TGG | + | chr3_1:77819066-77819085 | None:intergenic | 55.0% |
| CGGAGATGAAGGTCGGGTTT+GGG | + | chr3_1:77819225-77819244 | None:intergenic | 55.0% | |
| CTTCTGCGGAGATGAAGGTC+GGG | + | chr3_1:77819231-77819250 | None:intergenic | 55.0% | |
| CTTCATCTCCGCAGAAGAGC+CGG | - | chr3_1:77819234-77819253 | Msa0377390:three_prime_UTR | 55.0% | |
| CCGAGATCACCGATACCGTA+GGG | + | chr3_1:77819291-77819310 | None:intergenic | 55.0% | |
| !! | CCCTACGGTATCGGTGATCT+CGG | - | chr3_1:77819288-77819307 | Msa0377390:three_prime_UTR | 55.0% |
| TCCGAGATCACCGATACCGT+AGG | + | chr3_1:77819292-77819311 | None:intergenic | 55.0% | |
| GCCAAAGGGAGCAACCAGTT+TGG | + | chr3_1:77819347-77819366 | None:intergenic | 55.0% | |
| AACTGGTTGCTCCCTTTGGC+AGG | - | chr3_1:77819347-77819366 | Msa0377390:three_prime_UTR | 55.0% | |
| GGAAAGGGGAACCTGCCAAA+GGG | + | chr3_1:77819361-77819380 | None:intergenic | 55.0% | |
| CTCTCGTGCCTCCTGATGAA+GGG | - | chr3_1:77819768-77819787 | Msa0377390:CDS | 55.0% | |
| TCTCGTGCCTCCTGATGAAG+GGG | - | chr3_1:77819769-77819788 | Msa0377390:CDS | 55.0% | |
| ! | CTTGAAGAGCTTGTGGCGGA+TGG | - | chr3_1:77819938-77819957 | Msa0377390:CDS | 55.0% |
| ACTTTCCTCAGGCTGCAGAG+AGG | - | chr3_1:77820608-77820627 | Msa0377390:CDS | 55.0% | |
| TCTTACTGGTGCTTGCACGG+TGG | - | chr3_1:77821087-77821106 | Msa0377390:intron | 55.0% | |
| TTGCACGGTGGAGATGGCAT+AGG | - | chr3_1:77821099-77821118 | Msa0377390:intron | 55.0% | |
| TGCACGGTGGAGATGGCATA+GGG | - | chr3_1:77821100-77821119 | Msa0377390:intron | 55.0% | |
| GGAGATGGCATAGGGGTTCT+AGG | - | chr3_1:77821108-77821127 | Msa0377390:intron | 55.0% | |
| TCAGCGAAACTGGTCAGCTG+TGG | - | chr3_1:77822133-77822152 | Msa0377390:intron | 55.0% | |
| CAGCGAAACTGGTCAGCTGT+GGG | - | chr3_1:77822134-77822153 | Msa0377390:intron | 55.0% | |
| AGCGAAACTGGTCAGCTGTG+GGG | - | chr3_1:77822135-77822154 | Msa0377390:intron | 55.0% | |
| AAACTGGTCAGCTGTGGGGA+AGG | - | chr3_1:77822139-77822158 | Msa0377390:intron | 55.0% | |
| TATCCTGCGCACGTCGTATG+CGG | + | chr3_1:77822573-77822592 | None:intergenic | 55.0% | |
| GGATATTGGGCTGTTCGCTC+TGG | - | chr3_1:77822634-77822653 | Msa0377390:intron | 55.0% | |
| TGGGTGGAAAGTGGAAGGTC+AGG | - | chr3_1:77822751-77822770 | Msa0377390:intron | 55.0% | |
| ATCCATTGGAGCCCCTGGAA+TGG | - | chr3_1:77823099-77823118 | Msa0377390:intron | 55.0% | |
| ACTGGAGGACAGCCATTCCA+GGG | + | chr3_1:77823114-77823133 | None:intergenic | 55.0% | |
| AACTGGAGGACAGCCATTCC+AGG | + | chr3_1:77823115-77823134 | None:intergenic | 55.0% | |
| GGAATGGCTGTCCTCCAGTT+TGG | - | chr3_1:77823115-77823134 | Msa0377390:intron | 55.0% | |
| TTGGACTTGGGAGTTCTGCC+AGG | - | chr3_1:77823797-77823816 | Msa0377390:intron | 55.0% | |
| GCAGCACGAGGGAAGGAAAG+TGG | + | chr3_1:77819120-77819139 | None:intergenic | 60.0% | |
| CGAAGAAGCAGCACGAGGGA+AGG | + | chr3_1:77819127-77819146 | None:intergenic | 60.0% | |
| GCGGAGATGAAGGTCGGGTT+TGG | + | chr3_1:77819226-77819245 | None:intergenic | 60.0% | |
| CGGCTCTTCTGCGGAGATGA+AGG | + | chr3_1:77819236-77819255 | None:intergenic | 60.0% | |
| GGGAAAGGGGAACCTGCCAA+AGG | + | chr3_1:77819362-77819381 | None:intergenic | 60.0% | |
| ! | CCTTCATCAGGAGGCACGAG+AGG | + | chr3_1:77819770-77819789 | None:intergenic | 60.0% |
| CCTCTCGTGCCTCCTGATGA+AGG | - | chr3_1:77819767-77819786 | Msa0377390:CDS | 60.0% | |
| CTCGTGCCTCCTGATGAAGG+GGG | - | chr3_1:77819770-77819789 | Msa0377390:CDS | 60.0% | |
| GGAGAACCCCCTTCATCAGG+AGG | + | chr3_1:77819779-77819798 | None:intergenic | 60.0% | |
| GAAGGGGGTTCTCCTTACGC+AGG | - | chr3_1:77819785-77819804 | Msa0377390:CDS | 60.0% | |
| !! | GCTTGTGGCGGATGGGTTGT+TGG | - | chr3_1:77819946-77819965 | Msa0377390:intron | 60.0% |
| ATGAGCCTCTCTGCAGCCTG+AGG | + | chr3_1:77820616-77820635 | None:intergenic | 60.0% | |
| TGGTGCTTGCACGGTGGAGA+TGG | - | chr3_1:77821093-77821112 | Msa0377390:intron | 60.0% | |
| GCACGGTGGAGATGGCATAG+GGG | - | chr3_1:77821101-77821120 | Msa0377390:intron | 60.0% | |
| AGCCATTCCAGGGGCTCCAA+TGG | + | chr3_1:77823104-77823123 | None:intergenic | 60.0% | |
| CTGGAGGACAGCCATTCCAG+GGG | + | chr3_1:77823113-77823132 | None:intergenic | 60.0% | |
| GGCACTAATCCAGACAGCGC+TGG | - | chr3_1:77823732-77823751 | Msa0377390:CDS | 60.0% | |
| GGGTTCTCCTTACGCAGGCC+AGG | - | chr3_1:77819790-77819809 | Msa0377390:CDS | 65.0% | |
| CAACAGAGGCCAGCGCTGTC+TGG | + | chr3_1:77823744-77823763 | None:intergenic | 65.0% | |
| ACGCCGCATACGACGTGCGC+AGG | - | chr3_1:77822567-77822586 | Msa0377390:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 77819021 | 77824491 | 77819021 | ID=Msa0377390;Name=Msa0377390 |
| chr3_1 | mRNA | 77819021 | 77824491 | 77819021 | ID=Msa0377390-mRNA-1;Parent=Msa0377390;Name=Msa0377390-mRNA-1;_AED=0.22;_eAED=0.23;_QI=0|0.87|0.88|1|0.87|0.94|17|441|535 |
| chr3_1 | exon | 77819021 | 77819566 | 77819021 | ID=Msa0377390-mRNA-1:exon:18666;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77819672 | 77819824 | 77819672 | ID=Msa0377390-mRNA-1:exon:18665;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77819914 | 77819958 | 77819914 | ID=Msa0377390-mRNA-1:exon:18664;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77820163 | 77820251 | 77820163 | ID=Msa0377390-mRNA-1:exon:18663;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77820376 | 77820448 | 77820376 | ID=Msa0377390-mRNA-1:exon:18662;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77820592 | 77820666 | 77820592 | ID=Msa0377390-mRNA-1:exon:18661;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77820745 | 77820776 | 77820745 | ID=Msa0377390-mRNA-1:exon:18660;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77820857 | 77820996 | 77820857 | ID=Msa0377390-mRNA-1:exon:18659;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77821352 | 77821428 | 77821352 | ID=Msa0377390-mRNA-1:exon:18658;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77821542 | 77821700 | 77821542 | ID=Msa0377390-mRNA-1:exon:18657;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77821813 | 77821949 | 77821813 | ID=Msa0377390-mRNA-1:exon:18656;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77822815 | 77822893 | 77822815 | ID=Msa0377390-mRNA-1:exon:18655;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77823336 | 77823396 | 77823336 | ID=Msa0377390-mRNA-1:exon:18654;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77823519 | 77823607 | 77823519 | ID=Msa0377390-mRNA-1:exon:18653;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77823701 | 77823751 | 77823701 | ID=Msa0377390-mRNA-1:exon:18652;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77824218 | 77824225 | 77824218 | ID=Msa0377390-mRNA-1:exon:18651;Parent=Msa0377390-mRNA-1 |
| chr3_1 | exon | 77824257 | 77824491 | 77824257 | ID=Msa0377390-mRNA-1:exon:18650;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77824257 | 77824491 | 77824257 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77824218 | 77824225 | 77824218 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77823701 | 77823751 | 77823701 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77823519 | 77823607 | 77823519 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77823336 | 77823396 | 77823336 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77822815 | 77822893 | 77822815 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77821813 | 77821949 | 77821813 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77821542 | 77821700 | 77821542 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77821352 | 77821428 | 77821352 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77820857 | 77820996 | 77820857 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77820745 | 77820776 | 77820745 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77820592 | 77820666 | 77820592 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77820376 | 77820448 | 77820376 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77820163 | 77820251 | 77820163 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77819914 | 77819958 | 77819914 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77819672 | 77819824 | 77819672 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | CDS | 77819462 | 77819566 | 77819462 | ID=Msa0377390-mRNA-1:cds;Parent=Msa0377390-mRNA-1 |
| chr3_1 | three_prime_UTR | 77819021 | 77819461 | 77819021 | ID=Msa0377390-mRNA-1:three_prime_utr;Parent=Msa0377390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
