Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462130 | XP_024639473.1 | 85.274 | 292 | 5 | 2 | 1 | 255 | 1 | 291 | 3.90e-174 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462130 | sp|Q93WI0|STR12_ARATH | 58.252 | 206 | 51 | 1 | 85 | 255 | 94 | 299 | 1.07e-81 | 250 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462130 | I3T1X2 | 85.274 | 292 | 5 | 2 | 1 | 255 | 1 | 291 | 1.86e-174 | 491 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0821450 | Msa1462130 | 0.922533 | 8.685572e-89 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462130 | MtrunA17_Chr5g0441701 | 85.274 | 292 | 5 | 2 | 1 | 255 | 1 | 291 | 3.59e-178 | 491 |
| Msa1462130 | MtrunA17_Chr5g0441711 | 67.421 | 221 | 35 | 1 | 72 | 255 | 7 | 227 | 1.74e-106 | 308 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1462130 | AT5G19370.1 | 58.252 | 206 | 51 | 1 | 85 | 255 | 94 | 299 | 1.09e-82 | 250 |
Find 98 sgRNAs with CRISPR-Local
Find 486 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTTATTGGTCTAGATTT+AGG | 0.197984 | tig0041938:-8316 | Msa1462130:intergenic |
| GTTCTTCCCCTTCGACAATT+TGG | 0.223205 | tig0041938:+6272 | Msa1462130:CDS |
| TCAAATTTCGAATTTATTTC+AGG | 0.228249 | tig0041938:-6305 | Msa1462130:intergenic |
| GAGAAGAAGGTGAGTGAAAA+TGG | 0.233939 | tig0041938:-2589 | Msa1462130:intergenic |
| GCAGCAAGTGCCATCCAAAT+TGG | 0.249194 | tig0041938:-5516 | Msa1462130:intergenic |
| CGCATCTTTGCCAGGATTTA+CGG | 0.253996 | tig0041938:+6250 | Msa1462130:CDS |
| GTATGAAAATGTGTTTATTC+TGG | 0.263966 | tig0041938:+8341 | Msa1462130:three_prime_UTR |
| TTGTAGCAGTTCACACTCTT+TGG | 0.280638 | tig0041938:+8222 | Msa1462130:three_prime_UTR |
| AGTGATTGAGATTGTTAAAA+TGG | 0.287308 | tig0041938:+8584 | Msa1462130:three_prime_UTR |
| TCATGGAGTGCGGTCGTTAC+AGG | 0.294522 | tig0041938:+6543 | Msa1462130:CDS |
| GTACGGTGCAAGACCCAATT+TGG | 0.307918 | tig0041938:+5502 | Msa1462130:CDS |
| CTAAATTTACTATTTCCTTT+TGG | 0.314850 | tig0041938:-8285 | Msa1462130:intergenic |
| ATTCCTCCTTCATCTTTAGA+AGG | 0.322517 | tig0041938:-3369 | Msa1462130:intergenic |
| TGTCAATGTTTCAGGGGTTC+AGG | 0.333608 | tig0041938:+8038 | Msa1462130:intron |
| GTGGAAAGTGAAGAGAGTTT+TGG | 0.337549 | tig0041938:-2488 | Msa1462130:intergenic |
| TTGCTTCTTCTGCTTTGCTT+TGG | 0.343853 | tig0041938:-2427 | Msa1462130:intergenic |
| AGGAAAGTATACAATATTTC+CGG | 0.359015 | tig0041938:+8058 | Msa1462130:CDS |
| CCCTTCGACAATTTGGAACC+TGG | 0.365020 | tig0041938:+6279 | Msa1462130:CDS |
| AAATCTAGACCAATAAATAT+TGG | 0.370149 | tig0041938:+8319 | Msa1462130:three_prime_UTR |
| AACGCAGCCTCCTCAAATTC+AGG | 0.380340 | tig0041938:-5457 | Msa1462130:intergenic |
| GAATGTGTACCTGATGCTTT+AGG | 0.405912 | tig0041938:-2644 | Msa1462130:intergenic |
| GGAGGCATGGTTGAAGTAAA+GGG | 0.411655 | tig0041938:-2623 | Msa1462130:intergenic |
| CTTCAACAGAGAGTCGCTTC+AGG | 0.418819 | tig0041938:+2891 | Msa1462130:CDS |
| TCAAAAGGATACATATGTTC+TGG | 0.432724 | tig0041938:+6331 | Msa1462130:CDS |
| AATGCTTGGGTGGGTGAGAA+AGG | 0.432884 | tig0041938:+3389 | Msa1462130:CDS |
| CAAAACCTTGATCTCATGTA+AGG | 0.440131 | tig0041938:-8179 | Msa1462130:intergenic |
| ACGCAGACATAAACAATTGT+AGG | 0.441170 | tig0041938:-8487 | Msa1462130:intergenic |
| ATTTGCCCTTCTAAAGATGA+AGG | 0.442677 | tig0041938:+3363 | Msa1462130:CDS |
| TGCCAGGTGGTTGCAGTCAC+AGG | 0.448047 | tig0041938:+6567 | Msa1462130:CDS |
| TTCGAAATTTGATCCTCAAA+AGG | 0.452504 | tig0041938:+6316 | Msa1462130:CDS |
| TGGAGCGGAAAGGGAACTAT+TGG | 0.454068 | tig0041938:+2821 | Msa1462130:CDS |
| AAAGAGAAAGAGAAGATTGA+AGG | 0.455645 | tig0041938:-2515 | Msa1462130:intergenic |
| AGAGAAGATTGAAGGAATTG+TGG | 0.455952 | tig0041938:-2507 | Msa1462130:intergenic |
| TATTCTGGATCAAGAATTGA+AGG | 0.458598 | tig0041938:+8356 | Msa1462130:three_prime_UTR |
| AGGAGGCATGGTTGAAGTAA+AGG | 0.461856 | tig0041938:-2624 | Msa1462130:intergenic |
| CAGCAAGTGCCATCCAAATT+GGG | 0.464431 | tig0041938:-5515 | Msa1462130:intergenic |
| AGAAGATGACTCGAAACTAT+TGG | 0.464745 | tig0041938:+2863 | Msa1462130:CDS |
| AAAGATGAAGGAGGAATGCT+TGG | 0.466709 | tig0041938:+3375 | Msa1462130:CDS |
| CGAATTTATTTCAGGTCCCC+AGG | 0.474986 | tig0041938:-6297 | Msa1462130:intergenic |
| GGTGAAAGAGGAAGAGAAGA+AGG | 0.488861 | tig0041938:-2602 | Msa1462130:intergenic |
| CCTTCGACAATTTGGAACCT+GGG | 0.490723 | tig0041938:+6280 | Msa1462130:CDS |
| ACTATTGGTGCAGCATTTGT+TGG | 0.490771 | tig0041938:+2836 | Msa1462130:CDS |
| TGTTGAAGGTGGAGCGGAAA+GGG | 0.494453 | tig0041938:+2812 | Msa1462130:CDS |
| AGAGGGTAATGGAATTGAAA+AGG | 0.498481 | tig0041938:-8514 | Msa1462130:intergenic |
| ACCATGCCTCCTAAAGCATC+AGG | 0.500931 | tig0041938:+2635 | Msa1462130:CDS |
| CGCATAGGCATGAATTCCTC+CGG | 0.502603 | tig0041938:-8077 | Msa1462130:intergenic |
| GTGGGTGAGAAAGGGACAAA+TGG | 0.503662 | tig0041938:+3398 | Msa1462130:CDS |
| AGGACCACCGCATCTTTGCC+AGG | 0.505532 | tig0041938:+6242 | Msa1462130:intron |
| GCAACAGGTTCCTGAATTTG+AGG | 0.506375 | tig0041938:+5447 | Msa1462130:intron |
| ACCTGATGCTTTAGGAGGCA+TGG | 0.513684 | tig0041938:-2636 | Msa1462130:intergenic |
| GTTGAAGTAAAGGGTGAAAG+AGG | 0.515919 | tig0041938:-2614 | Msa1462130:intergenic |
| AATCATGTAATTCAGTATGT+AGG | 0.517168 | tig0041938:-8121 | Msa1462130:intergenic |
| TTCTGAATGCAGTGTCATCA+TGG | 0.518008 | tig0041938:+6526 | Msa1462130:intron |
| ATGCTTGGGTGGGTGAGAAA+GGG | 0.521007 | tig0041938:+3390 | Msa1462130:CDS |
| AGGGGAAGAACCGTAAATCC+TGG | 0.530255 | tig0041938:-6260 | Msa1462130:intergenic |
| TTCCTCCTTCATCTTTAGAA+GGG | 0.530879 | tig0041938:-3368 | Msa1462130:intergenic |
| AGAAGGTGAGTGAAAATGGA+AGG | 0.531242 | tig0041938:-2585 | Msa1462130:intergenic |
| ATGAAGGAGGAATGCTTGGG+TGG | 0.532984 | tig0041938:+3379 | Msa1462130:CDS |
| CACCTTTAAACAAAATTGTA+CGG | 0.534323 | tig0041938:+5485 | Msa1462130:CDS |
| AAAGTAACAGTTAGATGCAG+AGG | 0.536034 | tig0041938:-8445 | Msa1462130:intergenic |
| GGTTCACGAATAATACCAAA+AGG | 0.544515 | tig0041938:+8270 | Msa1462130:three_prime_UTR |
| TATTGGTCTAGATTTAGGTA+AGG | 0.551876 | tig0041938:-8311 | Msa1462130:intergenic |
| ACTGGAGGTAGTGCTGTTGA+AGG | 0.553456 | tig0041938:+2798 | Msa1462130:CDS |
| AATTCATGCCTATGCGGTGA+AGG | 0.566762 | tig0041938:+8084 | Msa1462130:CDS |
| CCCAGGTTCCAAATTGTCGA+AGG | 0.575644 | tig0041938:-6280 | Msa1462130:intergenic |
| AGAAATTCCATGGAAAGTAG+AGG | 0.577050 | tig0041938:+8621 | Msa1462130:three_prime_UTR |
| TACCTGTGACTGCAACCACC+TGG | 0.579154 | tig0041938:-6569 | Msa1462130:intergenic |
| GGAAAACCACACAGACAGAG+AGG | 0.589995 | tig0041938:-8557 | Msa1462130:intergenic |
| AGAGCTTGTCAATTTCGCGT+TGG | 0.593887 | tig0041938:+2455 | Msa1462130:CDS |
| GAAGGTGAGTGAAAATGGAA+GGG | 0.604292 | tig0041938:-2584 | Msa1462130:intergenic |
| ATTCAGTATGTAGGAACTGA+CGG | 0.605517 | tig0041938:-8112 | Msa1462130:intergenic |
| TTACATATCAGGTCCCTACA+AGG | 0.605845 | tig0041938:+8410 | Msa1462130:three_prime_UTR |
| CCAGGTTCCAAATTGTCGAA+GGG | 0.607753 | tig0041938:-6279 | Msa1462130:intergenic |
| GGTGCAAGACCCAATTTGGA+TGG | 0.609238 | tig0041938:+5506 | Msa1462130:CDS |
| AAGATGAAGGAGGAATGCTT+GGG | 0.609792 | tig0041938:+3376 | Msa1462130:CDS |
| CTGTTGAAGGTGGAGCGGAA+AGG | 0.610200 | tig0041938:+2811 | Msa1462130:CDS |
| TGAAGGAGGAATGCTTGGGT+GGG | 0.612721 | tig0041938:+3380 | Msa1462130:CDS |
| TTAGCTTCATATAGTACTGG+AGG | 0.616381 | tig0041938:+2783 | Msa1462130:intron |
| AAATGCTCACATGCAAGGAG+AGG | 0.619913 | tig0041938:-8154 | Msa1462130:intergenic |
| TGTGGCCCTCTCTGTCTGTG+TGG | 0.621679 | tig0041938:+8551 | Msa1462130:three_prime_UTR |
| CGGATCGACCTTCACCGCAT+AGG | 0.626059 | tig0041938:-8092 | Msa1462130:intergenic |
| GGAGGTAGTGCTGTTGAAGG+TGG | 0.627503 | tig0041938:+2801 | Msa1462130:CDS |
| CTTCGACAATTTGGAACCTG+GGG | 0.627728 | tig0041938:+6281 | Msa1462130:CDS |
| TGCCCTTCTAAAGATGAAGG+AGG | 0.628170 | tig0041938:+3366 | Msa1462130:CDS |
| TGTGTACCTGATGCTTTAGG+AGG | 0.630800 | tig0041938:-2641 | Msa1462130:intergenic |
| CGTAAATCCTGGCAAAGATG+CGG | 0.636689 | tig0041938:-6249 | Msa1462130:intergenic |
| AAAGTATACAATATTTCCGG+AGG | 0.640010 | tig0041938:+8061 | Msa1462130:CDS |
| ACAGGTTCCTGAATTTGAGG+AGG | 0.641312 | tig0041938:+5450 | Msa1462130:intron |
| CAGGTTCCAAATTGTCGAAG+GGG | 0.646858 | tig0041938:-6278 | Msa1462130:intergenic |
| TACAATTGTTTATGTCTGCG+TGG | 0.648212 | tig0041938:+8489 | Msa1462130:three_prime_UTR |
| AAATCCTGGCAAAGATGCGG+TGG | 0.648291 | tig0041938:-6246 | Msa1462130:intergenic |
| CGGAGGAATTCATGCCTATG+CGG | 0.649137 | tig0041938:+8078 | Msa1462130:CDS |
| CACATGCAAGGAGAGGAAAG+TGG | 0.651407 | tig0041938:-8147 | Msa1462130:intergenic |
| TAGTGCTGTTGAAGGTGGAG+CGG | 0.654292 | tig0041938:+2806 | Msa1462130:CDS |
| AGATTTGAGTGATCTTGCTG+TGG | 0.658077 | tig0041938:+3332 | Msa1462130:CDS |
| GAAAACCACACAGACAGAGA+GGG | 0.662391 | tig0041938:-8556 | Msa1462130:intergenic |
| GGTCGTTACAGGTTGCCAGG+TGG | 0.689459 | tig0041938:+6554 | Msa1462130:CDS |
| TGCAGTGTCATCATGGAGTG+CGG | 0.698018 | tig0041938:+6533 | Msa1462130:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAAAAATAAAAAGT+GGG | - | tig0041938:2679-2698 | Msa1462130:intergenic | 10.0% |
| !! | AAAAAATGAAAAATAAAAAG+TGG | - | tig0041938:2680-2699 | Msa1462130:intergenic | 10.0% |
| !!! | AATTTGATTTTTAATTTTGT+TGG | + | tig0041938:2751-2770 | Msa1462130:intron | 10.0% |
| !!! | TATCTTTTTTAATTTTGAAA+AGG | - | tig0041938:6758-6777 | Msa1462130:intergenic | 10.0% |
| !!! | AAAATTACACTTTTATAACT+AGG | - | tig0041938:3716-3735 | Msa1462130:intergenic | 15.0% |
| !!! | ATATTTGTAAATTGCTTTTA+AGG | + | tig0041938:6719-6738 | Msa1462130:intron | 15.0% |
| !!! | ATTTTCATACCAATATTTAT+TGG | - | tig0041938:8331-8350 | Msa1462130:intergenic | 15.0% |
| !! | AAAAATTAAGATTACATATC+AGG | + | tig0041938:8399-8418 | Msa1462130:three_prime_UTR | 15.0% |
| !! | GAGAAAATAGAATAATTGAA+CGG | + | tig0041938:2995-3014 | Msa1462130:intron | 20.0% |
| !! | TTTAATTAAACCTTGTTCTT+AGG | + | tig0041938:3437-3456 | Msa1462130:intron | 20.0% |
| !! | TTAATTAAACCTTGTTCTTA+GGG | + | tig0041938:3438-3457 | Msa1462130:intron | 20.0% |
| !!! | ATAAACATACCAATTTTTTG+AGG | + | tig0041938:4555-4574 | Msa1462130:intron | 20.0% |
| !!! | TAAACATACCAATTTTTTGA+GGG | + | tig0041938:4556-4575 | Msa1462130:intron | 20.0% |
| !! | TATTGTGGTTCATAAAATTT+GGG | - | tig0041938:5387-5406 | Msa1462130:intergenic | 20.0% |
| !! | ATATTCAATGAATTTCACAT+TGG | - | tig0041938:5608-5627 | Msa1462130:intergenic | 20.0% |
| !! | TGTGAAATTCATTGAATATT+TGG | + | tig0041938:5609-5628 | Msa1462130:intron | 20.0% |
| !! | ATTAAAACAAACAACTAATC+GGG | - | tig0041938:5697-5716 | Msa1462130:intergenic | 20.0% |
| !! | CATTAAAACAAACAACTAAT+CGG | - | tig0041938:5698-5717 | Msa1462130:intergenic | 20.0% |
| !! | ATTAATTGAGCAAATTTACA+AGG | - | tig0041938:5732-5751 | Msa1462130:intergenic | 20.0% |
| !!! | AGTTAAAAGTTGATGAAAAT+AGG | - | tig0041938:5879-5898 | Msa1462130:intergenic | 20.0% |
| !! | TCAAATTTCGAATTTATTTC+AGG | - | tig0041938:6308-6327 | Msa1462130:intergenic | 20.0% |
| !! | CAAAATAAAGATGAATGAAT+TGG | - | tig0041938:6415-6434 | Msa1462130:intergenic | 20.0% |
| !!! | TTATTTTTTTTTTCTCTCTC+TGG | + | tig0041938:6479-6498 | Msa1462130:intron | 20.0% |
| !! | TCACAATGTGTATAAATAAT+AGG | + | tig0041938:7827-7846 | Msa1462130:intron | 20.0% |
| !! | AATGTGTATAAATAATAGGA+TGG | + | tig0041938:7831-7850 | Msa1462130:intron | 20.0% |
| !!! | TTGCTATTGTATGTAATAAA+TGG | + | tig0041938:7929-7948 | Msa1462130:intron | 20.0% |
| !! | CATAGAAAACAATATATGAT+AGG | - | tig0041938:7996-8015 | Msa1462130:intergenic | 20.0% |
| !!! | TTTGGAAATTTCAACTTTTA+CGG | + | tig0041938:8240-8259 | Msa1462130:three_prime_UTR | 20.0% |
| !!! | CTAAATTTACTATTTCCTTT+TGG | - | tig0041938:8288-8307 | Msa1462130:intergenic | 20.0% |
| !!! | ATATTTATTGGTCTAGATTT+AGG | - | tig0041938:8319-8338 | Msa1462130:intergenic | 20.0% |
| !! | AAATCTAGACCAATAAATAT+TGG | + | tig0041938:8319-8338 | Msa1462130:three_prime_UTR | 20.0% |
| !!! | ACATAAATTTTTGAAAGAGA+GGG | - | tig0041938:8534-8553 | Msa1462130:intergenic | 20.0% |
| !!! | ATTGTTAAAATGGTGATTTT+TGG | + | tig0041938:8594-8613 | Msa1462130:three_prime_UTR | 20.0% |
| !!! | TTTTTAGCTTCATATAGTAC+TGG | + | tig0041938:2780-2799 | Msa1462130:intron | 25.0% |
| !! | CGATTTTATCAAATCATTAG+TGG | - | tig0041938:3079-3098 | Msa1462130:intergenic | 25.0% |
| ! | AAGTCAGTTTCATTTACATA+AGG | - | tig0041938:3529-3548 | Msa1462130:intergenic | 25.0% |
| !!! | ACGTGTCTTATTTATATGAA+TGG | - | tig0041938:4814-4833 | Msa1462130:intergenic | 25.0% |
| ! | ATTCATATAAATAAGACACG+TGG | + | tig0041938:4151-4170 | Msa1462130:intron | 25.0% |
| !!! | TTTCATAATCTACTGGTTTT+GGG | + | tig0041938:4473-4492 | Msa1462130:intron | 25.0% |
| !!! | AAACATACCAATTTTTTGAG+GGG | + | tig0041938:4557-4576 | Msa1462130:intron | 25.0% |
| ! | CGTGGAAAAATAAAAATCAA+TGG | - | tig0041938:4797-4816 | Msa1462130:intergenic | 25.0% |
| ! | ATTCATATAAATAAGACACG+TGG | - | tig0041938:4151-4170 | Msa1462130:intergenic | 25.0% |
| !!! | ACGTGTCTTATTTATATGAA+TGG | + | tig0041938:4814-4833 | Msa1462130:intron | 25.0% |
| ! | TTTATTTGCTTTCGTCTAAT+AGG | + | tig0041938:5056-5075 | Msa1462130:intron | 25.0% |
| !!! | ACAAGTCAAGTTGATTTTAT+AGG | + | tig0041938:5346-5365 | Msa1462130:intron | 25.0% |
| !!! | CAAGTCAAGTTGATTTTATA+GGG | + | tig0041938:5347-5366 | Msa1462130:intron | 25.0% |
| ! | CTATTGTGGTTCATAAAATT+TGG | - | tig0041938:5388-5407 | Msa1462130:intergenic | 25.0% |
| ! | TCTAATTATGAAAATGCAAC+AGG | + | tig0041938:5432-5451 | Msa1462130:intron | 25.0% |
| ! | CACCTTTAAACAAAATTGTA+CGG | + | tig0041938:5485-5504 | Msa1462130:CDS | 25.0% |
| ! | TTGGATCAAACAATCAAATA+GGG | - | tig0041938:5646-5665 | Msa1462130:intergenic | 25.0% |
| ! | ATTGGATCAAACAATCAAAT+AGG | - | tig0041938:5647-5666 | Msa1462130:intergenic | 25.0% |
| ! | ATATCCATGAGATATCAAAA+GGG | - | tig0041938:6085-6104 | Msa1462130:intergenic | 25.0% |
| ! | AGACAGATAACTGAATAAAA+CGG | + | tig0041938:6794-6813 | Msa1462130:intron | 25.0% |
| !!! | ACAACACAGACTTTAATTTT+GGG | - | tig0041938:6857-6876 | Msa1462130:intergenic | 25.0% |
| !!! | TACAACACAGACTTTAATTT+TGG | - | tig0041938:6858-6877 | Msa1462130:intergenic | 25.0% |
| ! | AATTAGAAAACAATGACTAC+AGG | - | tig0041938:7113-7132 | Msa1462130:intergenic | 25.0% |
| ! | TCTAATTGTAACTAACTAAG+GGG | - | tig0041938:7178-7197 | Msa1462130:intergenic | 25.0% |
| ! | GTCTAATTGTAACTAACTAA+GGG | - | tig0041938:7179-7198 | Msa1462130:intergenic | 25.0% |
| ! | TGTCTAATTGTAACTAACTA+AGG | - | tig0041938:7180-7199 | Msa1462130:intergenic | 25.0% |
| ! | TAAAAAATTGTATTGGAGGA+GGG | - | tig0041938:7624-7643 | Msa1462130:intergenic | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | - | tig0041938:7628-7647 | Msa1462130:intergenic | 25.0% |
| ! | TGAAAGAAATAGAGGAAAAT+GGG | - | tig0041938:7710-7729 | Msa1462130:intergenic | 25.0% |
| !! | AGGAAAGTATACAATATTTC+CGG | + | tig0041938:8058-8077 | Msa1462130:CDS | 25.0% |
| ! | AATCATGTAATTCAGTATGT+AGG | - | tig0041938:8124-8143 | Msa1462130:intergenic | 25.0% |
| ! | GTATGAAAATGTGTTTATTC+TGG | + | tig0041938:8341-8360 | Msa1462130:three_prime_UTR | 25.0% |
| !!! | CACATAAATTTTTGAAAGAG+AGG | - | tig0041938:8535-8554 | Msa1462130:intergenic | 25.0% |
| ! | CTCTCTTTCAAAAATTTATG+TGG | + | tig0041938:8533-8552 | Msa1462130:three_prime_UTR | 25.0% |
| !!! | TAACAATCTCAATCACTTTT+AGG | - | tig0041938:8581-8600 | Msa1462130:intergenic | 25.0% |
| ! | AGTGATTGAGATTGTTAAAA+TGG | + | tig0041938:8584-8603 | Msa1462130:three_prime_UTR | 25.0% |
| !!! | TTTTGGTTTTAGAAATTCCA+TGG | + | tig0041938:8611-8630 | Msa1462130:three_prime_UTR | 25.0% |
| AAAGAGAAAGAGAAGATTGA+AGG | - | tig0041938:2518-2537 | Msa1462130:intergenic | 30.0% | |
| !!! | ATTTTGGAATGAGAATGTGA+AGG | - | tig0041938:2542-2561 | Msa1462130:intergenic | 30.0% |
| !!! | GTTTTTTGTAGGAAAAAGTG+TGG | - | tig0041938:2565-2584 | Msa1462130:intergenic | 30.0% |
| !!! | AAAATGGAAGGGTTTTTTGT+AGG | - | tig0041938:2576-2595 | Msa1462130:intergenic | 30.0% |
| AAACTCTTAACTACGTCAAT+AGG | - | tig0041938:2717-2736 | Msa1462130:intergenic | 30.0% | |
| TATCAAATCATTAGTGGTGT+CGG | - | tig0041938:3073-3092 | Msa1462130:intergenic | 30.0% | |
| ACACCTTTAATATGAAGTCT+CGG | + | tig0041938:3230-3249 | Msa1462130:intron | 30.0% | |
| ACTTGTGAAGTTTCTTTCTA+AGG | + | tig0041938:3278-3297 | Msa1462130:intron | 30.0% | |
| ! | GTTACAGTTGATATACATCA+CGG | + | tig0041938:3503-3522 | Msa1462130:intron | 30.0% |
| ATAGTTGTATGAAGTTTCTG+TGG | + | tig0041938:3569-3588 | Msa1462130:intron | 30.0% | |
| TAGTTGTATGAAGTTTCTGT+GGG | + | tig0041938:3570-3589 | Msa1462130:intron | 30.0% | |
| ATTGTTGGAAACCTTAATTG+TGG | + | tig0041938:3752-3771 | Msa1462130:intron | 30.0% | |
| CTAATTCAACCCTACAAAAT+CGG | - | tig0041938:3939-3958 | Msa1462130:intergenic | 30.0% | |
| GTGGAAAAATAAGATCTCAA+TGG | + | tig0041938:4170-4189 | Msa1462130:intron | 30.0% | |
| AGTTGTAATACAGTAGTCAA+CGG | - | tig0041938:4325-4344 | Msa1462130:intergenic | 30.0% | |
| TCTACAGTTTCATAATCTAC+TGG | + | tig0041938:4466-4485 | Msa1462130:intron | 30.0% | |
| !!! | GTTTCATAATCTACTGGTTT+TGG | + | tig0041938:4472-4491 | Msa1462130:intron | 30.0% |
| TAATCACAACCAAATTGAGT+TGG | + | tig0041938:4508-4527 | Msa1462130:intron | 30.0% | |
| ! | CTTTTATCCCCTCAAAAAAT+TGG | - | tig0041938:4567-4586 | Msa1462130:intergenic | 30.0% |
| !!! | CAATTTTTTGAGGGGATAAA+AGG | + | tig0041938:4565-4584 | Msa1462130:intron | 30.0% |
| AATTAGACAAGTAGTAACAG+TGG | + | tig0041938:4605-4624 | Msa1462130:intron | 30.0% | |
| !!! | CTGTTGTGTTTTAGTTTAGT+GGG | + | tig0041938:5024-5043 | Msa1462130:intron | 30.0% |
| !! | TATTTCTTTTGTTTGAGGAG+TGG | + | tig0041938:5152-5171 | Msa1462130:intron | 30.0% |
| !! | ATTACTTCTCTCTTTTGAGT+TGG | + | tig0041938:5178-5197 | Msa1462130:intron | 30.0% |
| !!! | TTACTTCTCTCTTTTGAGTT+GGG | + | tig0041938:5179-5198 | Msa1462130:intron | 30.0% |
| ATCACATAACTGTACTATTG+TGG | - | tig0041938:5402-5421 | Msa1462130:intergenic | 30.0% | |
| CAATAGTACAGTTATGTGAT+TGG | + | tig0041938:5402-5421 | Msa1462130:intron | 30.0% | |
| !! | CACCGTACAATTTTGTTTAA+AGG | - | tig0041938:5490-5509 | Msa1462130:intergenic | 30.0% |
| ! | AATTTGCTCAATTAATTGCC+AGG | + | tig0041938:5736-5755 | Msa1462130:intron | 30.0% |
| ATTTGCTCAATTAATTGCCA+GGG | + | tig0041938:5737-5756 | Msa1462130:intron | 30.0% | |
| ! | CATGCTTGTATGATTTGTAT+AGG | + | tig0041938:5919-5938 | Msa1462130:intron | 30.0% |
| !! | TTAGTGATGATAAGTTGATG+AGG | + | tig0041938:5981-6000 | Msa1462130:intron | 30.0% |
| ! | AATTCCCTTTTGATATCTCA+TGG | + | tig0041938:6078-6097 | Msa1462130:intron | 30.0% |
| GATATCCATGAGATATCAAA+AGG | - | tig0041938:6086-6105 | Msa1462130:intergenic | 30.0% | |
| TTCGAAATTTGATCCTCAAA+AGG | + | tig0041938:6316-6335 | Msa1462130:CDS | 30.0% | |
| ! | AGAACATATGTATCCTTTTG+AGG | - | tig0041938:6332-6351 | Msa1462130:intergenic | 30.0% |
| TCAAAAGGATACATATGTTC+TGG | + | tig0041938:6331-6350 | Msa1462130:CDS | 30.0% | |
| ! | TAGACATGCTTACACTTTTA+AGG | - | tig0041938:6607-6626 | Msa1462130:intergenic | 30.0% |
| CAATATGTGAACAAGTTTCA+AGG | - | tig0041938:6648-6667 | Msa1462130:intergenic | 30.0% | |
| AAGTCTGTGTTGTAAAATAG+CGG | + | tig0041938:6864-6883 | Msa1462130:intron | 30.0% | |
| ACTAAATCGTGGAACAATAA+CGG | - | tig0041938:6924-6943 | Msa1462130:intergenic | 30.0% | |
| CCAATTCCAGAAACATATAT+AGG | - | tig0041938:7058-7077 | Msa1462130:intergenic | 30.0% | |
| !! | CCTATATATGTTTCTGGAAT+TGG | + | tig0041938:7055-7074 | Msa1462130:intron | 30.0% |
| GAATTGGAACTGACATATTT+AGG | + | tig0041938:7071-7090 | Msa1462130:intron | 30.0% | |
| CTAATTGTAACTAACTAAGG+GGG | - | tig0041938:7177-7196 | Msa1462130:intergenic | 30.0% | |
| GTTAGTTACAATTAGACAGT+TGG | + | tig0041938:7182-7201 | Msa1462130:intron | 30.0% | |
| CTAAAAAATTGTATTGGAGG+AGG | - | tig0041938:7625-7644 | Msa1462130:intergenic | 30.0% | |
| GGGGAACTAAAAAATTGTAT+TGG | - | tig0041938:7631-7650 | Msa1462130:intergenic | 30.0% | |
| GTGAAAGAAATAGAGGAAAA+TGG | - | tig0041938:7711-7730 | Msa1462130:intergenic | 30.0% | |
| CTAACTACTTGAATCTACTA+AGG | - | tig0041938:7794-7813 | Msa1462130:intergenic | 30.0% | |
| TAAATAATAGGATGGATGTG+AGG | + | tig0041938:7839-7858 | Msa1462130:intron | 30.0% | |
| ACAATATATGATAGGAACTG+TGG | - | tig0041938:7988-8007 | Msa1462130:intergenic | 30.0% | |
| !!! | GTATTGACTTTTGATTGTGT+TGG | + | tig0041938:8015-8034 | Msa1462130:intron | 30.0% |
| AAAGTATACAATATTTCCGG+AGG | + | tig0041938:8061-8080 | Msa1462130:CDS | 30.0% | |
| ! | TTTTTCCTTACATGAGATCA+AGG | + | tig0041938:8174-8193 | Msa1462130:three_prime_UTR | 30.0% |
| ! | TATTGGTCTAGATTTAGGTA+AGG | - | tig0041938:8314-8333 | Msa1462130:intergenic | 30.0% |
| TATTCTGGATCAAGAATTGA+AGG | + | tig0041938:8356-8375 | Msa1462130:three_prime_UTR | 30.0% | |
| !! | ATTTTTGAAAGAGAGGGTAA+TGG | - | tig0041938:8528-8547 | Msa1462130:intergenic | 30.0% |
| AAAAAAACCTCTACTTTCCA+TGG | - | tig0041938:8631-8650 | Msa1462130:intergenic | 30.0% | |
| !!! | AGTGAAGAGAGTTTTGGAAT+CGG | - | tig0041938:2485-2504 | Msa1462130:intergenic | 35.0% |
| AGAGAAGATTGAAGGAATTG+TGG | - | tig0041938:2510-2529 | Msa1462130:intergenic | 35.0% | |
| !! | GTAGGAAAAAGTGTGGATTT+TGG | - | tig0041938:2558-2577 | Msa1462130:intergenic | 35.0% |
| ! | TTAGCTTCATATAGTACTGG+AGG | + | tig0041938:2783-2802 | Msa1462130:intron | 35.0% |
| AGAAGATGACTCGAAACTAT+TGG | + | tig0041938:2863-2882 | Msa1462130:CDS | 35.0% | |
| ! | CGCTTCAGGTTAAAAATAGT+TGG | + | tig0041938:2905-2924 | Msa1462130:intron | 35.0% |
| TAACCATATACCATGAAGCA+CGG | + | tig0041938:3018-3037 | Msa1462130:intron | 35.0% | |
| GCGAATATAACTATGAAGCA+CGG | - | tig0041938:3166-3185 | Msa1462130:intergenic | 35.0% | |
| ! | ATTTGCCCTTCTAAAGATGA+AGG | + | tig0041938:3363-3382 | Msa1462130:CDS | 35.0% |
| ! | TTCCTCCTTCATCTTTAGAA+GGG | - | tig0041938:3371-3390 | Msa1462130:intergenic | 35.0% |
| ATTCCTCCTTCATCTTTAGA+AGG | - | tig0041938:3372-3391 | Msa1462130:intergenic | 35.0% | |
| ! | CAAATGGTATGCTGTTGTTT+AGG | + | tig0041938:3414-3433 | Msa1462130:intron | 35.0% |
| ATTGAGAAACCCTAAGAACA+AGG | - | tig0041938:3450-3469 | Msa1462130:intergenic | 35.0% | |
| !!! | TTGCAGTTTGCTACTTTTTG+TGG | + | tig0041938:3481-3500 | Msa1462130:intron | 35.0% |
| TGACTTTGTCTGTTAGAGAA+GGG | + | tig0041938:3543-3562 | Msa1462130:intron | 35.0% | |
| CCGATATCATCTTAGAGTTT+GGG | - | tig0041938:3968-3987 | Msa1462130:intergenic | 35.0% | |
| !! | CCCAAACTCTAAGATGATAT+CGG | + | tig0041938:3965-3984 | Msa1462130:intron | 35.0% |
| TCCGATATCATCTTAGAGTT+TGG | - | tig0041938:3969-3988 | Msa1462130:intergenic | 35.0% | |
| CTCAAAACCTGGCATAAATT+GGG | - | tig0041938:4041-4060 | Msa1462130:intergenic | 35.0% | |
| ! | TGGAAATTTTGCCTTGATTG+TGG | + | tig0041938:4070-4089 | Msa1462130:intron | 35.0% |
| ATTGCAATTTCCTCCCTAAA+TGG | - | tig0041938:4845-4864 | Msa1462130:intergenic | 35.0% | |
| ATAACAGTCACAGAGAAACA+GGG | - | tig0041938:4382-4401 | Msa1462130:intergenic | 35.0% | |
| !! | ACAACCAAATTGAGTTGGTA+TGG | + | tig0041938:4513-4532 | Msa1462130:intron | 35.0% |
| !! | CAACCAAATTGAGTTGGTAT+GGG | + | tig0041938:4514-4533 | Msa1462130:intron | 35.0% |
| ! | AGTGGCGAAAATCTCATTTT+TGG | + | tig0041938:4623-4642 | Msa1462130:intron | 35.0% |
| ATTGCAATTTCCTCCCTAAA+TGG | + | tig0041938:4845-4864 | Msa1462130:intron | 35.0% | |
| ! | AGCCAAATTTAAGATGCCTA+GGG | - | tig0041938:4890-4909 | Msa1462130:intergenic | 35.0% |
| ! | AAGCCAAATTTAAGATGCCT+AGG | - | tig0041938:4891-4910 | Msa1462130:intergenic | 35.0% |
| TTTAGATCTCTAGTCTGTGT+AGG | - | tig0041938:4979-4998 | Msa1462130:intergenic | 35.0% | |
| !!! | GCTGTTGTGTTTTAGTTTAG+TGG | + | tig0041938:5023-5042 | Msa1462130:intron | 35.0% |
| !! | GCGTCTATTTCTTTTGTTTG+AGG | + | tig0041938:5147-5166 | Msa1462130:intron | 35.0% |
| !!! | TACTTCTCTCTTTTGAGTTG+GGG | + | tig0041938:5180-5199 | Msa1462130:intron | 35.0% |
| !! | TTTATCTGAGAGGTATTTCC+AGG | + | tig0041938:5543-5562 | Msa1462130:intron | 35.0% |
| ! | CAACTTAAAAAGCATATGCC+TGG | - | tig0041938:5564-5583 | Msa1462130:intergenic | 35.0% |
| !!! | CAGGCATATGCTTTTTAAGT+TGG | + | tig0041938:5562-5581 | Msa1462130:intron | 35.0% |
| ATATCAAGATCCCAACTTCT+TGG | + | tig0041938:5806-5825 | Msa1462130:intron | 35.0% | |
| ATTGCTTATGTTTACGTCAG+TGG | + | tig0041938:6174-6193 | Msa1462130:intron | 35.0% | |
| ATGATTCTCTCATCATACAC+AGG | + | tig0041938:6222-6241 | Msa1462130:intron | 35.0% | |
| GGCTTCTAACTATTCAAACT+TGG | - | tig0041938:6376-6395 | Msa1462130:intergenic | 35.0% | |
| AGTGTAATTCTGAATCCATG+CGG | + | tig0041938:6673-6692 | Msa1462130:intron | 35.0% | |
| CAACACTTTGTACTAAATCG+TGG | - | tig0041938:6935-6954 | Msa1462130:intergenic | 35.0% | |
| !! | TACAAAGTGTTGTCTACTAG+TGG | + | tig0041938:6943-6962 | Msa1462130:intron | 35.0% |
| ACGGTTCCTATATATGTTTC+TGG | + | tig0041938:7049-7068 | Msa1462130:intron | 35.0% | |
| ACAAGCTGTTAATCCAAACA+AGG | - | tig0041938:7208-7227 | Msa1462130:intergenic | 35.0% | |
| TTAATTCCAAACAGACCCTT+AGG | + | tig0041938:7404-7423 | Msa1462130:intron | 35.0% | |
| GTGGAAAATATGAGGGAAAA+TGG | + | tig0041938:7473-7492 | Msa1462130:intron | 35.0% | |
| !!! | TTTTTTAGTTCCCCCAAATG+AGG | + | tig0041938:7637-7656 | Msa1462130:intron | 35.0% |
| ATACTAAACCCTCCTCATTT+GGG | - | tig0041938:7652-7671 | Msa1462130:intergenic | 35.0% | |
| AATACTAAACCCTCCTCATT+TGG | - | tig0041938:7653-7672 | Msa1462130:intergenic | 35.0% | |
| AGAAATAGAGGAAAATGGGA+GGG | - | tig0041938:7706-7725 | Msa1462130:intergenic | 35.0% | |
| AAGAAATAGAGGAAAATGGG+AGG | - | tig0041938:7707-7726 | Msa1462130:intergenic | 35.0% | |
| TGAGCAAGTGAAAGAAATAG+AGG | - | tig0041938:7718-7737 | Msa1462130:intergenic | 35.0% | |
| GTAGATTCAAGTAGTTAGAG+AGG | + | tig0041938:7796-7815 | Msa1462130:intron | 35.0% | |
| ! | CTAGTCAATTAAGAAAGCGT+TGG | + | tig0041938:7869-7888 | Msa1462130:intron | 35.0% |
| ATTCAGTATGTAGGAACTGA+CGG | - | tig0041938:8115-8134 | Msa1462130:intergenic | 35.0% | |
| CAAAACCTTGATCTCATGTA+AGG | - | tig0041938:8182-8201 | Msa1462130:intergenic | 35.0% | |
| GGTTCACGAATAATACCAAA+AGG | + | tig0041938:8270-8289 | Msa1462130:three_prime_UTR | 35.0% | |
| GAAACCAAAAACACCTTGTA+GGG | - | tig0041938:8426-8445 | Msa1462130:intergenic | 35.0% | |
| AAAGTAACAGTTAGATGCAG+AGG | - | tig0041938:8448-8467 | Msa1462130:intergenic | 35.0% | |
| ACGCAGACATAAACAATTGT+AGG | - | tig0041938:8490-8509 | Msa1462130:intergenic | 35.0% | |
| TACAATTGTTTATGTCTGCG+TGG | + | tig0041938:8489-8508 | Msa1462130:three_prime_UTR | 35.0% | |
| !! | AGAGGGTAATGGAATTGAAA+AGG | - | tig0041938:8517-8536 | Msa1462130:intergenic | 35.0% |
| AGAAATTCCATGGAAAGTAG+AGG | + | tig0041938:8621-8640 | Msa1462130:three_prime_UTR | 35.0% | |
| TTGCTTCTTCTGCTTTGCTT+TGG | - | tig0041938:2430-2449 | None:intergenic | 40.0% | |
| ! | GTGGAAAGTGAAGAGAGTTT+TGG | - | tig0041938:2491-2510 | Msa1462130:intergenic | 40.0% |
| GAAGGTGAGTGAAAATGGAA+GGG | - | tig0041938:2587-2606 | Msa1462130:intergenic | 40.0% | |
| AGAAGGTGAGTGAAAATGGA+AGG | - | tig0041938:2588-2607 | Msa1462130:intergenic | 40.0% | |
| GAGAAGAAGGTGAGTGAAAA+TGG | - | tig0041938:2592-2611 | Msa1462130:intergenic | 40.0% | |
| GTTGAAGTAAAGGGTGAAAG+AGG | - | tig0041938:2617-2636 | Msa1462130:intergenic | 40.0% | |
| GAATGTGTACCTGATGCTTT+AGG | - | tig0041938:2647-2666 | Msa1462130:intergenic | 40.0% | |
| ACTATTGGTGCAGCATTTGT+TGG | + | tig0041938:2836-2855 | Msa1462130:CDS | 40.0% | |
| TGTTGGAAACTGACATCTCT+TGG | + | tig0041938:3198-3217 | Msa1462130:intron | 40.0% | |
| GCACCGAGACTTCATATTAA+AGG | - | tig0041938:3236-3255 | Msa1462130:intergenic | 40.0% | |
| TTGTTGTGTGTTGTGTGTTC+AGG | + | tig0041938:3306-3325 | Msa1462130:intron | 40.0% | |
| AGATTTGAGTGATCTTGCTG+TGG | + | tig0041938:3332-3351 | Msa1462130:CDS | 40.0% | |
| AAAGATGAAGGAGGAATGCT+TGG | + | tig0041938:3375-3394 | Msa1462130:CDS | 40.0% | |
| AAGATGAAGGAGGAATGCTT+GGG | + | tig0041938:3376-3395 | Msa1462130:CDS | 40.0% | |
| CTGACTTTGTCTGTTAGAGA+AGG | + | tig0041938:3542-3561 | Msa1462130:intron | 40.0% | |
| TGTATGAAGTTTCTGTGGGT+AGG | + | tig0041938:3574-3593 | Msa1462130:intron | 40.0% | |
| GGTGAAAACTTGAGGTTCAA+AGG | + | tig0041938:3595-3614 | Msa1462130:intron | 40.0% | |
| ATTCCCTTCACAGAATCACA+TGG | - | tig0041938:3672-3691 | Msa1462130:intergenic | 40.0% | |
| TCTGTGAAGGGAATCAGATA+AGG | + | tig0041938:3678-3697 | Msa1462130:intron | 40.0% | |
| AAACCCAAATGCCGCAATTA+AGG | - | tig0041938:3792-3811 | Msa1462130:intergenic | 40.0% | |
| !! | CAACACAATGAAAGTGTTGG+AGG | - | tig0041938:3828-3847 | Msa1462130:intergenic | 40.0% |
| CTCCAACACTTTCATTGTGT+TGG | + | tig0041938:3826-3845 | Msa1462130:intron | 40.0% | |
| ! | GTCCAACACAATGAAAGTGT+TGG | - | tig0041938:3831-3850 | Msa1462130:intergenic | 40.0% |
| TTCATTGTGTTGGACTTGAG+AGG | + | tig0041938:3836-3855 | Msa1462130:intron | 40.0% | |
| GCTTACAAGCACTACTACTT+AGG | - | tig0041938:3893-3912 | Msa1462130:intergenic | 40.0% | |
| AGTAGTAGTGCTTGTAAGCT+TGG | + | tig0041938:3894-3913 | Msa1462130:intron | 40.0% | |
| !! | AGCTGACAAACCGATTTTGT+AGG | + | tig0041938:3926-3945 | Msa1462130:intron | 40.0% |
| !! | GCTGACAAACCGATTTTGTA+GGG | + | tig0041938:3927-3946 | Msa1462130:intron | 40.0% |
| GTCTATCCTAGATCTGTTGT+TGG | + | tig0041938:3989-4008 | Msa1462130:intron | 40.0% | |
| CCTCAAAACCTGGCATAAAT+TGG | - | tig0041938:4042-4061 | Msa1462130:intergenic | 40.0% | |
| ! | CCAATTTATGCCAGGTTTTG+AGG | + | tig0041938:4039-4058 | Msa1462130:intron | 40.0% |
| ATGGTGAAAGGTTGAAGATG+AGG | - | tig0041938:4275-4294 | Msa1462130:intergenic | 40.0% | |
| CATCTTCAACCTTTCACCAT+CGG | + | tig0041938:4275-4294 | Msa1462130:intron | 40.0% | |
| TTCGGGAATGATAAAGCAAG+TGG | - | tig0041938:4353-4372 | Msa1462130:intergenic | 40.0% | |
| !! | AGAGAAACAGGGAAAGTGTT+CGG | - | tig0041938:4371-4390 | Msa1462130:intergenic | 40.0% |
| CATAACAGTCACAGAGAAAC+AGG | - | tig0041938:4383-4402 | Msa1462130:intergenic | 40.0% | |
| CAACCCATACCAACTCAATT+TGG | - | tig0041938:4520-4539 | Msa1462130:intergenic | 40.0% | |
| ! | TATGGGTTGAACATGAGATG+AGG | + | tig0041938:4531-4550 | Msa1462130:intron | 40.0% |
| !!! | CATTTTTGGCAACACCACTA+AGG | + | tig0041938:4637-4656 | Msa1462130:intron | 40.0% |
| TGAACTCCAAATGAGAGAGA+AGG | + | tig0041938:4716-4735 | Msa1462130:intron | 40.0% | |
| CTACTTCCTTCTCTCTCATT+TGG | - | tig0041938:4725-4744 | Msa1462130:intergenic | 40.0% | |
| CAAATGAGAGAGAAGGAAGT+AGG | + | tig0041938:4723-4742 | Msa1462130:intron | 40.0% | |
| AATTTCCTCCCTAAATGGAG+AGG | + | tig0041938:4850-4869 | Msa1462130:intron | 40.0% | |
| ! | GCCAAATTTAAGATGCCTAG+GGG | - | tig0041938:4889-4908 | Msa1462130:intergenic | 40.0% |
| AGAGATCTAAATAGCCGTGA+AGG | + | tig0041938:4988-5007 | Msa1462130:intron | 40.0% | |
| GAGATCTAAATAGCCGTGAA+GGG | + | tig0041938:4989-5008 | Msa1462130:intron | 40.0% | |
| TGCTTTCGTCTAATAGGAAG+TGG | + | tig0041938:5062-5081 | Msa1462130:intron | 40.0% | |
| !! | ATAGGAAGTGGATTGTTCTG+TGG | + | tig0041938:5074-5093 | Msa1462130:intron | 40.0% |
| !! | TGAGTTGGGGTTTTCTGTTT+AGG | + | tig0041938:5193-5212 | Msa1462130:intron | 40.0% |
| !! | TGCTGCAAGTTTTATCTGAG+AGG | + | tig0041938:5533-5552 | Msa1462130:CDS | 40.0% |
| ! | ATGAGGTGATGTTGGCTAAT+TGG | - | tig0041938:5665-5684 | Msa1462130:intergenic | 40.0% |
| AATTAGCCAACATCACCTCA+TGG | + | tig0041938:5664-5683 | Msa1462130:intron | 40.0% | |
| ATTAGCCAACATCACCTCAT+GGG | + | tig0041938:5665-5684 | Msa1462130:intron | 40.0% | |
| GGTTGAATGTCTTGAAGTAC+TGG | - | tig0041938:5768-5787 | Msa1462130:intergenic | 40.0% | |
| TATTTCACATGCAGCTCATC+AGG | - | tig0041938:5789-5808 | Msa1462130:intergenic | 40.0% | |
| ! | ATAGGAGCATACACTTCTTC+AGG | - | tig0041938:5861-5880 | Msa1462130:intergenic | 40.0% |
| CTCAGCAAGCTAAGTACTAA+CGG | - | tig0041938:5961-5980 | Msa1462130:intergenic | 40.0% | |
| TCTGGTAAGCACAACTTTAG+CGG | + | tig0041938:6349-6368 | Msa1462130:intron | 40.0% | |
| ATGACACTGCATTCAGAAGT+CGG | - | tig0041938:6524-6543 | Msa1462130:intergenic | 40.0% | |
| TTCTGAATGCAGTGTCATCA+TGG | + | tig0041938:6526-6545 | Msa1462130:intron | 40.0% | |
| TAAGACGTCCTGAACAAAGA+CGG | + | tig0041938:7030-7049 | Msa1462130:intron | 40.0% | |
| TATAGGAACCGTCTTTGTTC+AGG | - | tig0041938:7041-7060 | Msa1462130:intergenic | 40.0% | |
| TGTAACTAACTAAGGGGGTT+AGG | - | tig0041938:7172-7191 | Msa1462130:intergenic | 40.0% | |
| !! | ATTAGACAGTTGGCCTTGTT+TGG | + | tig0041938:7192-7211 | Msa1462130:intron | 40.0% |
| ! | AGTGACTTGTGAGACTGTTT+CGG | - | tig0041938:7353-7372 | Msa1462130:intergenic | 40.0% |
| TCACAAGTCACTAGTGCTTA+TGG | + | tig0041938:7361-7380 | Msa1462130:intron | 40.0% | |
| AACTCCCAAACAAAGCCTAA+GGG | - | tig0041938:7422-7441 | Msa1462130:intergenic | 40.0% | |
| AAACTCCCAAACAAAGCCTA+AGG | - | tig0041938:7423-7442 | Msa1462130:intergenic | 40.0% | |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | + | tig0041938:7422-7441 | Msa1462130:intron | 40.0% |
| TTTGAGGGGTGGAAAATATG+AGG | + | tig0041938:7465-7484 | Msa1462130:intron | 40.0% | |
| TTGAGGGGTGGAAAATATGA+GGG | + | tig0041938:7466-7485 | Msa1462130:intron | 40.0% | |
| TACTAAACCCTCCTCATTTG+GGG | - | tig0041938:7651-7670 | Msa1462130:intergenic | 40.0% | |
| GAAATAGAGGAAAATGGGAG+GGG | - | tig0041938:7705-7724 | Msa1462130:intergenic | 40.0% | |
| ATAATAGGATGGATGTGAGG+AGG | + | tig0041938:7842-7861 | Msa1462130:intron | 40.0% | |
| !! | TAAGAAAGCGTTGGATCCTT+TGG | + | tig0041938:7878-7897 | Msa1462130:intron | 40.0% |
| !! | AAGAAAGCGTTGGATCCTTT+GGG | + | tig0041938:7879-7898 | Msa1462130:intron | 40.0% |
| !! | TGTGTTGGTGTCAATGTTTC+AGG | + | tig0041938:8030-8049 | Msa1462130:intron | 40.0% |
| !! | GTGTTGGTGTCAATGTTTCA+GGG | + | tig0041938:8031-8050 | Msa1462130:intron | 40.0% |
| !! | TGTTGGTGTCAATGTTTCAG+GGG | + | tig0041938:8032-8051 | Msa1462130:intron | 40.0% |
| AGGAAAAATGCTCACATGCA+AGG | - | tig0041938:8162-8181 | Msa1462130:intergenic | 40.0% | |
| TTGTAGCAGTTCACACTCTT+TGG | + | tig0041938:8222-8241 | Msa1462130:three_prime_UTR | 40.0% | |
| TTACATATCAGGTCCCTACA+AGG | + | tig0041938:8410-8429 | Msa1462130:three_prime_UTR | 40.0% | |
| GGAAACCAAAAACACCTTGT+AGG | - | tig0041938:8427-8446 | Msa1462130:intergenic | 40.0% | |
| AGAGCTTGTCAATTTCGCGT+TGG | + | tig0041938:2455-2474 | Msa1462130:CDS | 45.0% | |
| GGTGAAAGAGGAAGAGAAGA+AGG | - | tig0041938:2605-2624 | Msa1462130:intergenic | 45.0% | |
| ! | GGAGGCATGGTTGAAGTAAA+GGG | - | tig0041938:2626-2645 | Msa1462130:intergenic | 45.0% |
| ! | AGGAGGCATGGTTGAAGTAA+AGG | - | tig0041938:2627-2646 | Msa1462130:intergenic | 45.0% |
| ! | TGTGTACCTGATGCTTTAGG+AGG | - | tig0041938:2644-2663 | Msa1462130:intergenic | 45.0% |
| TCTCCGTGCTTCATGGTATA+TGG | - | tig0041938:3024-3043 | Msa1462130:intergenic | 45.0% | |
| ! | TTCGCGAATCGTGATAGTGT+TGG | + | tig0041938:3181-3200 | Msa1462130:intron | 45.0% |
| AACTGACATCTCTTGGACAC+TGG | + | tig0041938:3205-3224 | Msa1462130:intron | 45.0% | |
| !! | TCTCGGTGCTAGATGTATCT+GGG | + | tig0041938:3247-3266 | Msa1462130:intron | 45.0% |
| ! | TGCCCTTCTAAAGATGAAGG+AGG | + | tig0041938:3366-3385 | Msa1462130:CDS | 45.0% |
| TGTGGGTAGGTGAAAACTTG+AGG | + | tig0041938:3587-3606 | Msa1462130:intron | 45.0% | |
| TGTGCCATGTGATTCTGTGA+AGG | + | tig0041938:3665-3684 | Msa1462130:intron | 45.0% | |
| GTGCCATGTGATTCTGTGAA+GGG | + | tig0041938:3666-3685 | Msa1462130:intron | 45.0% | |
| TTGTGTTGGACTTGAGAGGT+TGG | + | tig0041938:3840-3859 | Msa1462130:intron | 45.0% | |
| TGTGTTGGACTTGAGAGGTT+GGG | + | tig0041938:3841-3860 | Msa1462130:intron | 45.0% | |
| CTACTACTTAGGCCATGTCT+AGG | - | tig0041938:3882-3901 | Msa1462130:intergenic | 45.0% | |
| ACCTGGCATAAATTGGGCTA+GGG | - | tig0041938:4035-4054 | Msa1462130:intergenic | 45.0% | |
| AACCTGGCATAAATTGGGCT+AGG | - | tig0041938:4036-4055 | Msa1462130:intergenic | 45.0% | |
| !!! | TTTATGCCAGGTTTTGAGGC+AGG | + | tig0041938:4043-4062 | Msa1462130:intron | 45.0% |
| !!! | TTATGCCAGGTTTTGAGGCA+GGG | + | tig0041938:4044-4063 | Msa1462130:intron | 45.0% |
| AGTGCAGATGCTCTCCATTT+AGG | + | tig0041938:4104-4123 | Msa1462130:intron | 45.0% | |
| GTGCAGATGCTCTCCATTTA+GGG | + | tig0041938:4105-4124 | Msa1462130:intron | 45.0% | |
| !! | GAGAAACAGGGAAAGTGTTC+GGG | - | tig0041938:4370-4389 | Msa1462130:intergenic | 45.0% |
| ! | TTTTGGCAACACCACTAAGG+CGG | + | tig0041938:4640-4659 | Msa1462130:intron | 45.0% |
| TATGACGAAGATACGAGGTG+TGG | + | tig0041938:4666-4685 | Msa1462130:intron | 45.0% | |
| ATGAGAGAGAAGGAAGTAGG+TGG | + | tig0041938:4726-4745 | Msa1462130:intron | 45.0% | |
| GTGCAGATCCTCTCCATTTA+GGG | - | tig0041938:4861-4880 | Msa1462130:intergenic | 45.0% | |
| AGTGCAGATCCTCTCCATTT+AGG | - | tig0041938:4862-4881 | Msa1462130:intergenic | 45.0% | |
| ! | AATTTAAGATGCCTAGGGGC+AGG | - | tig0041938:4885-4904 | Msa1462130:intergenic | 45.0% |
| GCCCCTAGGCATCTTAAATT+TGG | + | tig0041938:4885-4904 | Msa1462130:intron | 45.0% | |
| TTCGAGCACCTTAATTGTGC+TGG | + | tig0041938:4932-4951 | Msa1462130:intron | 45.0% | |
| TCGAGCACCTTAATTGTGCT+GGG | + | tig0041938:4933-4952 | Msa1462130:intron | 45.0% | |
| TCTCACACCCAGCACAATTA+AGG | - | tig0041938:4943-4962 | Msa1462130:intergenic | 45.0% | |
| TTAATTGTGCTGGGTGTGAG+AGG | + | tig0041938:4942-4961 | Msa1462130:intron | 45.0% | |
| ! | ATTGTTTGGTGAGCCTAGCT+TGG | + | tig0041938:5107-5126 | Msa1462130:intron | 45.0% |
| TCCTAACACACAACCAAGCT+AGG | - | tig0041938:5123-5142 | Msa1462130:intergenic | 45.0% | |
| ATGTTACCTGTGCTCTGCAT+AGG | + | tig0041938:5220-5239 | Msa1462130:intron | 45.0% | |
| ! | GGTTGTAACCTTTTTCCCAC+CGG | + | tig0041938:5249-5268 | Msa1462130:intron | 45.0% |
| AAACACAAGACGTATCCGGT+GGG | - | tig0041938:5267-5286 | Msa1462130:intergenic | 45.0% | |
| ACCGGATACGTCTTGTGTTT+CGG | + | tig0041938:5267-5286 | Msa1462130:intron | 45.0% | |
| TCCGAAACACAAGACGTATC+CGG | - | tig0041938:5271-5290 | Msa1462130:intergenic | 45.0% | |
| GCAACAGGTTCCTGAATTTG+AGG | + | tig0041938:5447-5466 | Msa1462130:intron | 45.0% | |
| ACAGGTTCCTGAATTTGAGG+AGG | + | tig0041938:5450-5469 | Msa1462130:intron | 45.0% | |
| CAGCAAGTGCCATCCAAATT+GGG | - | tig0041938:5518-5537 | Msa1462130:intergenic | 45.0% | |
| CTTATCCCATGAGGTGATGT+TGG | - | tig0041938:5673-5692 | Msa1462130:intergenic | 45.0% | |
| CAACATCACCTCATGGGATA+AGG | + | tig0041938:5671-5690 | Msa1462130:intron | 45.0% | |
| !! | TTGAAGTACTGGTTCTTCCC+TGG | - | tig0041938:5757-5776 | Msa1462130:intergenic | 45.0% |
| TCAAGATCCCAACTTCTTGG+AGG | + | tig0041938:5809-5828 | Msa1462130:intron | 45.0% | |
| ! | TTTACGTCAGTGGCTGATTC+TGG | + | tig0041938:6184-6203 | Msa1462130:intron | 45.0% |
| CGTAAATCCTGGCAAAGATG+CGG | - | tig0041938:6252-6271 | Msa1462130:intergenic | 45.0% | |
| CGCATCTTTGCCAGGATTTA+CGG | + | tig0041938:6250-6269 | Msa1462130:CDS | 45.0% | |
| GTTCTTCCCCTTCGACAATT+TGG | + | tig0041938:6272-6291 | Msa1462130:CDS | 45.0% | |
| CAGGTTCCAAATTGTCGAAG+GGG | - | tig0041938:6281-6300 | Msa1462130:intergenic | 45.0% | |
| CCAGGTTCCAAATTGTCGAA+GGG | - | tig0041938:6282-6301 | Msa1462130:intergenic | 45.0% | |
| ! | CCTTCGACAATTTGGAACCT+GGG | + | tig0041938:6280-6299 | Msa1462130:CDS | 45.0% |
| ! | CTTCGACAATTTGGAACCTG+GGG | + | tig0041938:6281-6300 | Msa1462130:CDS | 45.0% |
| ! | CGAATTTATTTCAGGTCCCC+AGG | - | tig0041938:6300-6319 | Msa1462130:intergenic | 45.0% |
| TGACACTGCATTCAGAAGTC+GGG | - | tig0041938:6523-6542 | Msa1462130:intergenic | 45.0% | |
| TGAAGCAACAATTGTCCGCA+TGG | - | tig0041938:6691-6710 | Msa1462130:intergenic | 45.0% | |
| GCGCTATAGTACTAGCATAG+TGG | + | tig0041938:6886-6905 | Msa1462130:intron | 45.0% | |
| ! | GTGTTGAGTGTTGTCAATCG+CGG | - | tig0041938:6982-7001 | Msa1462130:intergenic | 45.0% |
| ! | GTGACTTGTGAGACTGTTTC+GGG | - | tig0041938:7352-7371 | Msa1462130:intergenic | 45.0% |
| ACAAAGCCTAAGGGTCTGTT+TGG | - | tig0041938:7413-7432 | Msa1462130:intergenic | 45.0% | |
| !! | ACAGACCCTTAGGCTTTGTT+TGG | + | tig0041938:7414-7433 | Msa1462130:intron | 45.0% |
| !! | CAGACCCTTAGGCTTTGTTT+GGG | + | tig0041938:7415-7434 | Msa1462130:intron | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | tig0041938:7426-7445 | Msa1462130:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | tig0041938:7427-7446 | Msa1462130:intron | 45.0% |
| ! | TTTAGTTCCCCCAAATGAGG+AGG | + | tig0041938:7640-7659 | Msa1462130:intron | 45.0% |
| TTAGTTCCCCCAAATGAGGA+GGG | + | tig0041938:7641-7660 | Msa1462130:intron | 45.0% | |
| ACTAAACCCTCCTCATTTGG+GGG | - | tig0041938:7650-7669 | Msa1462130:intergenic | 45.0% | |
| AGGGAAAGGCTTGGGAAAAA+AGG | - | tig0041938:7743-7762 | Msa1462130:intergenic | 45.0% | |
| !! | TAAGGCTTTGTTTGCGAGTG+TGG | - | tig0041938:7776-7795 | Msa1462130:intergenic | 45.0% |
| TGTCAATGTTTCAGGGGTTC+AGG | + | tig0041938:8038-8057 | Msa1462130:intron | 45.0% | |
| AATTCATGCCTATGCGGTGA+AGG | + | tig0041938:8084-8103 | Msa1462130:CDS | 45.0% | |
| AAATGCTCACATGCAAGGAG+AGG | - | tig0041938:8157-8176 | Msa1462130:intergenic | 45.0% | |
| ! | TGAGATCAAGGTTTTGCGAG+AGG | + | tig0041938:8186-8205 | Msa1462130:three_prime_UTR | 45.0% |
| ! | GAGATCAAGGTTTTGCGAGA+GGG | + | tig0041938:8187-8206 | Msa1462130:three_prime_UTR | 45.0% |
| ! | TTCAACTTTTACGGCTTGCG+AGG | + | tig0041938:8249-8268 | Msa1462130:three_prime_UTR | 45.0% |
| !! | AGGTCCCTACAAGGTGTTTT+TGG | + | tig0041938:8419-8438 | Msa1462130:three_prime_UTR | 45.0% |
| GAAAACCACACAGACAGAGA+GGG | - | tig0041938:8559-8578 | Msa1462130:intergenic | 45.0% | |
| !!! | TTATTTTTCATTTTTTTTAT+TGG | + | tig0041938:2684-2703 | Msa1462130:intron | 5.0% |
| !!! | AAAATTAATTTTATTATTGT+TGG | + | tig0041938:3737-3756 | Msa1462130:intron | 5.0% |
| ! | ACCATGCCTCCTAAAGCATC+AGG | + | tig0041938:2635-2654 | Msa1462130:CDS | 50.0% |
| !! | ACCTGATGCTTTAGGAGGCA+TGG | - | tig0041938:2639-2658 | Msa1462130:intergenic | 50.0% |
| ! | ACTGGAGGTAGTGCTGTTGA+AGG | + | tig0041938:2798-2817 | Msa1462130:CDS | 50.0% |
| ! | TAGTGCTGTTGAAGGTGGAG+CGG | + | tig0041938:2806-2825 | Msa1462130:CDS | 50.0% |
| TGTTGAAGGTGGAGCGGAAA+GGG | + | tig0041938:2812-2831 | Msa1462130:CDS | 50.0% | |
| TGGAGCGGAAAGGGAACTAT+TGG | + | tig0041938:2821-2840 | Msa1462130:CDS | 50.0% | |
| CTTCAACAGAGAGTCGCTTC+AGG | + | tig0041938:2891-2910 | Msa1462130:CDS | 50.0% | |
| ATACCATGAAGCACGGAGAC+CGG | + | tig0041938:3025-3044 | Msa1462130:intron | 50.0% | |
| GTCAGTATCTGTGTCGTGTC+CGG | - | tig0041938:3047-3066 | Msa1462130:intergenic | 50.0% | |
| GACACTCCTCGAATTAGCCA+CGG | - | tig0041938:3144-3163 | Msa1462130:intergenic | 50.0% | |
| !! | GTCTCGGTGCTAGATGTATC+TGG | + | tig0041938:3246-3265 | Msa1462130:intron | 50.0% |
| ATGAAGGAGGAATGCTTGGG+TGG | + | tig0041938:3379-3398 | Msa1462130:CDS | 50.0% | |
| TGAAGGAGGAATGCTTGGGT+GGG | + | tig0041938:3380-3399 | Msa1462130:CDS | 50.0% | |
| AATGCTTGGGTGGGTGAGAA+AGG | + | tig0041938:3389-3408 | Msa1462130:CDS | 50.0% | |
| ATGCTTGGGTGGGTGAGAAA+GGG | + | tig0041938:3390-3409 | Msa1462130:CDS | 50.0% | |
| GTGGGTGAGAAAGGGACAAA+TGG | + | tig0041938:3398-3417 | Msa1462130:CDS | 50.0% | |
| CTAGAGGCGGACCACAATTA+AGG | - | tig0041938:3766-3785 | Msa1462130:intergenic | 50.0% | |
| CCCAAATGCCGCAATTAAGG+CGG | - | tig0041938:3789-3808 | Msa1462130:intergenic | 50.0% | |
| CCGCCTTAATTGCGGCATTT+GGG | + | tig0041938:3786-3805 | Msa1462130:intron | 50.0% | |
| ! | AGTGTTGGAGGCTGCAATGA+GGG | - | tig0041938:3816-3835 | Msa1462130:intergenic | 50.0% |
| !! | AAGTGTTGGAGGCTGCAATG+AGG | - | tig0041938:3817-3836 | Msa1462130:intergenic | 50.0% |
| AGTCCCACATGACCTAGACA+TGG | + | tig0041938:3867-3886 | Msa1462130:intron | 50.0% | |
| AGGCCATGTCTAGGTCATGT+GGG | - | tig0041938:3873-3892 | Msa1462130:intergenic | 50.0% | |
| TAGGCCATGTCTAGGTCATG+TGG | - | tig0041938:3874-3893 | Msa1462130:intergenic | 50.0% | |
| GGCAGTCCAACAACAGATCT+AGG | - | tig0041938:3998-4017 | Msa1462130:intergenic | 50.0% | |
| ! | CCTGGCATAAATTGGGCTAG+GGG | - | tig0041938:4034-4053 | Msa1462130:intergenic | 50.0% |
| !! | TGGAGAGCATCTGCACTCTA+GGG | - | tig0041938:4101-4120 | Msa1462130:intergenic | 50.0% |
| !! | ATGGAGAGCATCTGCACTCT+AGG | - | tig0041938:4102-4121 | Msa1462130:intergenic | 50.0% |
| CAGATGCTCTCCATTTAGGG+AGG | + | tig0041938:4108-4127 | Msa1462130:intron | 50.0% | |
| ACGAAGATACGAGGTGTGGT+CGG | + | tig0041938:4670-4689 | Msa1462130:intron | 50.0% | |
| GCGACGATAGTGAGTTCTCA+AGG | + | tig0041938:4692-4711 | Msa1462130:intron | 50.0% | |
| CAGATCCTCTCCATTTAGGG+AGG | - | tig0041938:4858-4877 | Msa1462130:intergenic | 50.0% | |
| GCACACAAAGAAGCCCTTCA+CGG | - | tig0041938:5005-5024 | Msa1462130:intergenic | 50.0% | |
| GATTGTTCTGTGGCTTCCTG+TGG | + | tig0041938:5084-5103 | Msa1462130:intron | 50.0% | |
| ! | GTGGCTTCCTGTGGATTGTT+TGG | + | tig0041938:5093-5112 | Msa1462130:intron | 50.0% |
| AGGCTCACCAAACAATCCAC+AGG | - | tig0041938:5103-5122 | Msa1462130:intergenic | 50.0% | |
| GCCTAGCTTGGTTGTGTGTT+AGG | + | tig0041938:5119-5138 | Msa1462130:intron | 50.0% | |
| AGACGTATCCGGTGGGAAAA+AGG | - | tig0041938:5260-5279 | Msa1462130:intergenic | 50.0% | |
| GAAACACAAGACGTATCCGG+TGG | - | tig0041938:5268-5287 | Msa1462130:intergenic | 50.0% | |
| AACGCAGCCTCCTCAAATTC+AGG | - | tig0041938:5460-5479 | Msa1462130:intergenic | 50.0% | |
| GTACGGTGCAAGACCCAATT+TGG | + | tig0041938:5502-5521 | Msa1462130:CDS | 50.0% | |
| GGTGCAAGACCCAATTTGGA+TGG | + | tig0041938:5506-5525 | Msa1462130:CDS | 50.0% | |
| GCAGCAAGTGCCATCCAAAT+TGG | - | tig0041938:5519-5538 | Msa1462130:intergenic | 50.0% | |
| ! | TAATCGGGCCTTATCCCATG+AGG | - | tig0041938:5682-5701 | Msa1462130:intergenic | 50.0% |
| AGATCCCAACTTCTTGGAGG+AGG | + | tig0041938:5812-5831 | Msa1462130:intron | 50.0% | |
| TGTGCCTCCTCCAAGAAGTT+GGG | - | tig0041938:5819-5838 | Msa1462130:intergenic | 50.0% | |
| AAATCCTGGCAAAGATGCGG+TGG | - | tig0041938:6249-6268 | Msa1462130:intergenic | 50.0% | |
| AGGGGAAGAACCGTAAATCC+TGG | - | tig0041938:6263-6282 | Msa1462130:intergenic | 50.0% | |
| ! | CCCTTCGACAATTTGGAACC+TGG | + | tig0041938:6279-6298 | Msa1462130:CDS | 50.0% |
| CCCAGGTTCCAAATTGTCGA+AGG | - | tig0041938:6283-6302 | Msa1462130:intergenic | 50.0% | |
| TGCAGTGTCATCATGGAGTG+CGG | + | tig0041938:6533-6552 | Msa1462130:intron | 50.0% | |
| GAGACTGTTTCGGGAGCTTA+GGG | - | tig0041938:7343-7362 | Msa1462130:intergenic | 50.0% | |
| TGAGACTGTTTCGGGAGCTT+AGG | - | tig0041938:7344-7363 | Msa1462130:intergenic | 50.0% | |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | tig0041938:7425-7444 | Msa1462130:intron | 50.0% |
| AGGGGAAGGGAAGACTTTGA+GGG | + | tig0041938:7450-7469 | Msa1462130:intron | 50.0% | |
| TAGAGGAAAATGGGAGGGGA+GGG | - | tig0041938:7701-7720 | Msa1462130:intergenic | 50.0% | |
| ATAGAGGAAAATGGGAGGGG+AGG | - | tig0041938:7702-7721 | Msa1462130:intergenic | 50.0% | |
| ! | CTTTGTTTGCGAGTGTGGAG+GGG | - | tig0041938:7771-7790 | Msa1462130:intergenic | 50.0% |
| !! | GCTTTGTTTGCGAGTGTGGA+GGG | - | tig0041938:7772-7791 | Msa1462130:intergenic | 50.0% |
| CGTTGGATCCTTTGGGCATT+GGG | + | tig0041938:7886-7905 | Msa1462130:intron | 50.0% | |
| CGCATAGGCATGAATTCCTC+CGG | - | tig0041938:8080-8099 | Msa1462130:intergenic | 50.0% | |
| CGGAGGAATTCATGCCTATG+CGG | + | tig0041938:8078-8097 | Msa1462130:CDS | 50.0% | |
| CACATGCAAGGAGAGGAAAG+TGG | - | tig0041938:8150-8169 | Msa1462130:intergenic | 50.0% | |
| GGAAAACCACACAGACAGAG+AGG | - | tig0041938:8560-8579 | Msa1462130:intergenic | 50.0% | |
| ! | GGAGGTAGTGCTGTTGAAGG+TGG | + | tig0041938:2801-2820 | Msa1462130:CDS | 55.0% |
| CTGTTGAAGGTGGAGCGGAA+AGG | + | tig0041938:2811-2830 | Msa1462130:CDS | 55.0% | |
| GCAATTAAGGCGGCTAGAGG+CGG | - | tig0041938:3779-3798 | Msa1462130:intergenic | 55.0% | |
| GCCTCTAGCCGCCTTAATTG+CGG | + | tig0041938:3778-3797 | Msa1462130:intron | 55.0% | |
| GCCGCCTTAATTGCGGCATT+TGG | + | tig0041938:3785-3804 | Msa1462130:intron | 55.0% | |
| ! | CATAAATTGGGCTAGGGGCG+TGG | - | tig0041938:4029-4048 | Msa1462130:intergenic | 55.0% |
| CCCCTAGCCCAATTTATGCC+AGG | + | tig0041938:4031-4050 | Msa1462130:intron | 55.0% | |
| CAACACCCTGCCTCAAAACC+TGG | - | tig0041938:4052-4071 | Msa1462130:intergenic | 55.0% | |
| !!! | CAGGTTTTGAGGCAGGGTGT+TGG | + | tig0041938:4050-4069 | Msa1462130:intron | 55.0% |
| CTAGGGGCAGACCACAATCA+AGG | - | tig0041938:4084-4103 | Msa1462130:intergenic | 55.0% | |
| !! | GGAGAGCATCTGCACTCTAG+GGG | - | tig0041938:4100-4119 | Msa1462130:intergenic | 55.0% |
| GGCACAATGCCGATGGTGAA+AGG | - | tig0041938:4287-4306 | Msa1462130:intergenic | 55.0% | |
| ATCGGCATTGTGCCCTTCAC+CGG | + | tig0041938:4293-4312 | Msa1462130:intron | 55.0% | |
| CAGTAGTCAACGGAAACCGC+CGG | - | tig0041938:4315-4334 | Msa1462130:intergenic | 55.0% | |
| GGCGGTATGACGAAGATACG+AGG | + | tig0041938:4661-4680 | Msa1462130:intron | 55.0% | |
| GGTGCTCGAAGCTGCAATGA+AGG | - | tig0041938:4922-4941 | Msa1462130:intergenic | 55.0% | |
| ACGCTACCTATGCAGAGCAC+AGG | - | tig0041938:5229-5248 | Msa1462130:intergenic | 55.0% | |
| TGTGCTCTGCATAGGTAGCG+TGG | + | tig0041938:5228-5247 | Msa1462130:intron | 55.0% | |
| CTGTGCCTCCTCCAAGAAGT+TGG | - | tig0041938:5820-5839 | Msa1462130:intergenic | 55.0% | |
| TCATGGAGTGCGGTCGTTAC+AGG | + | tig0041938:6543-6562 | Msa1462130:CDS | 55.0% | |
| TACCTGTGACTGCAACCACC+TGG | - | tig0041938:6572-6591 | Msa1462130:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | tig0041938:7430-7449 | Msa1462130:intron | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | tig0041938:7431-7450 | Msa1462130:intron | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | + | tig0041938:7432-7451 | Msa1462130:intron | 55.0% | |
| GAGGGGAAGGGAAGACTTTG+AGG | + | tig0041938:7449-7468 | Msa1462130:intron | 55.0% | |
| GGGGAAGGGAAGACTTTGAG+GGG | + | tig0041938:7451-7470 | Msa1462130:intron | 55.0% | |
| ! | GAAGGGAAGACTTTGAGGGG+TGG | + | tig0041938:7454-7473 | Msa1462130:intron | 55.0% |
| AAATGGGAGGGGAGGGCTTT+GGG | - | tig0041938:7694-7713 | Msa1462130:intergenic | 55.0% | |
| AAAATGGGAGGGGAGGGCTT+TGG | - | tig0041938:7695-7714 | Msa1462130:intergenic | 55.0% | |
| TTTGCGAGTGTGGAGGGGAA+GGG | - | tig0041938:7766-7785 | Msa1462130:intergenic | 55.0% | |
| !! | GGCTTTGTTTGCGAGTGTGG+AGG | - | tig0041938:7773-7792 | Msa1462130:intergenic | 55.0% |
| GCGTTGGATCCTTTGGGCAT+TGG | + | tig0041938:7885-7904 | Msa1462130:intron | 55.0% | |
| !! | TGGATCCTTTGGGCATTGGG+AGG | + | tig0041938:7889-7908 | Msa1462130:intron | 55.0% |
| CTACACCTCCCAATGCCCAA+AGG | - | tig0041938:7897-7916 | Msa1462130:intergenic | 55.0% | |
| TGTCCGGTCTCCGTGCTTCA+TGG | - | tig0041938:3031-3050 | Msa1462130:intergenic | 60.0% | |
| CGCTGTCCGTGGCTAATTCG+AGG | + | tig0041938:3135-3154 | Msa1462130:intron | 60.0% | |
| GCCGCAATTAAGGCGGCTAG+AGG | - | tig0041938:3782-3801 | Msa1462130:intergenic | 60.0% | |
| ! | GGTGAAGGGCACAATGCCGA+TGG | - | tig0041938:4294-4313 | Msa1462130:intergenic | 60.0% |
| CAACGGAAACCGCCGGTGAA+GGG | - | tig0041938:4308-4327 | Msa1462130:intergenic | 60.0% | |
| TCAACGGAAACCGCCGGTGA+AGG | - | tig0041938:4309-4328 | Msa1462130:intergenic | 60.0% | |
| TGGCAACACCACTAAGGCGG+CGG | + | tig0041938:4643-4662 | Msa1462130:intron | 60.0% | |
| TCGTCATACCGCCGCCTTAG+TGG | - | tig0041938:4654-4673 | Msa1462130:intergenic | 60.0% | |
| TTGTGCTGGGTGTGAGAGGC+TGG | + | tig0041938:4946-4965 | Msa1462130:intron | 60.0% | |
| TGTGCTGGGTGTGAGAGGCT+GGG | + | tig0041938:4947-4966 | Msa1462130:intron | 60.0% | |
| AGGACCACCGCATCTTTGCC+AGG | + | tig0041938:6242-6261 | Msa1462130:intron | 60.0% | |
| TGCGGTCGTTACAGGTTGCC+AGG | + | tig0041938:6551-6570 | Msa1462130:CDS | 60.0% | |
| GGTCGTTACAGGTTGCCAGG+TGG | + | tig0041938:6554-6573 | Msa1462130:CDS | 60.0% | |
| TGCCAGGTGGTTGCAGTCAC+AGG | + | tig0041938:6567-6586 | Msa1462130:CDS | 60.0% | |
| GAGTTTGGAGGGGAGGGGAA+GGG | + | tig0041938:7437-7456 | Msa1462130:intron | 60.0% | |
| AATGGGAGGGGAGGGCTTTG+GGG | - | tig0041938:7693-7712 | Msa1462130:intergenic | 60.0% | |
| GGGAAGGGAGGGAAAGGCTT+GGG | - | tig0041938:7751-7770 | Msa1462130:intergenic | 60.0% | |
| GTTTGCGAGTGTGGAGGGGA+AGG | - | tig0041938:7767-7786 | Msa1462130:intergenic | 60.0% | |
| CGGATCGACCTTCACCGCAT+AGG | - | tig0041938:8095-8114 | Msa1462130:intergenic | 60.0% | |
| TGTGGCCCTCTCTGTCTGTG+TGG | + | tig0041938:8551-8570 | Msa1462130:three_prime_UTR | 60.0% | |
| ! | GCTAGGGGCGTGGACAATGC+AGG | - | tig0041938:4019-4038 | Msa1462130:intergenic | 65.0% |
| GGCATTGTGCCCTTCACCGG+CGG | + | tig0041938:4296-4315 | Msa1462130:intron | 65.0% | |
| GGATCTGCACTCCTGCCCCT+AGG | + | tig0041938:4871-4890 | Msa1462130:intron | 65.0% | |
| GGAGTTTGGAGGGGAGGGGA+AGG | + | tig0041938:7436-7455 | Msa1462130:intron | 65.0% | |
| ! | ATGGGAGGGGAGGGCTTTGG+GGG | - | tig0041938:7692-7711 | Msa1462130:intergenic | 65.0% |
| GGGGAAGGGAGGGAAAGGCT+TGG | - | tig0041938:7752-7771 | Msa1462130:intergenic | 65.0% | |
| GTGGAGGGGAAGGGAGGGAA+AGG | - | tig0041938:7757-7776 | Msa1462130:intergenic | 65.0% | |
| CGAGTGTGGAGGGGAAGGGA+GGG | - | tig0041938:7762-7781 | Msa1462130:intergenic | 65.0% | |
| ! | CGCTGTCGTGTCGCTGTCCG+TGG | + | tig0041938:3124-3143 | Msa1462130:intron | 70.0% |
| !! | TGGGAGGGGAGGGCTTTGGG+GGG | - | tig0041938:7691-7710 | Msa1462130:intergenic | 70.0% |
| GCGAGTGTGGAGGGGAAGGG+AGG | - | tig0041938:7763-7782 | Msa1462130:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0041938 | gene | 2400 | 8661 | 2400 | ID=Msa1462130;Name=Msa1462130 |
| tig0041938 | mRNA | 2400 | 8661 | 2400 | ID=Msa1462130-mRNA-1;Parent=Msa1462130;Name=Msa1462130-mRNA-1;_AED=0.14;_eAED=0.14;_QI=49|0.83|1|1|1|1|7|529|255 |
| tig0041938 | exon | 2400 | 2656 | 2400 | ID=Msa1462130-mRNA-1:exon:23504;Parent=Msa1462130-mRNA-1 |
| tig0041938 | exon | 2787 | 2912 | 2787 | ID=Msa1462130-mRNA-1:exon:23505;Parent=Msa1462130-mRNA-1 |
| tig0041938 | exon | 3328 | 3419 | 3328 | ID=Msa1462130-mRNA-1:exon:23506;Parent=Msa1462130-mRNA-1 |
| tig0041938 | exon | 5454 | 5554 | 5454 | ID=Msa1462130-mRNA-1:exon:23507;Parent=Msa1462130-mRNA-1 |
| tig0041938 | exon | 6244 | 6352 | 6244 | ID=Msa1462130-mRNA-1:exon:23508;Parent=Msa1462130-mRNA-1 |
| tig0041938 | exon | 6538 | 6588 | 6538 | ID=Msa1462130-mRNA-1:exon:23509;Parent=Msa1462130-mRNA-1 |
| tig0041938 | exon | 8052 | 8661 | 8052 | ID=Msa1462130-mRNA-1:exon:23510;Parent=Msa1462130-mRNA-1 |
| tig0041938 | five_prime_UTR | 2400 | 2448 | 2400 | ID=Msa1462130-mRNA-1:five_prime_utr;Parent=Msa1462130-mRNA-1 |
| tig0041938 | CDS | 2449 | 2656 | 2449 | ID=Msa1462130-mRNA-1:cds;Parent=Msa1462130-mRNA-1 |
| tig0041938 | CDS | 2787 | 2912 | 2787 | ID=Msa1462130-mRNA-1:cds;Parent=Msa1462130-mRNA-1 |
| tig0041938 | CDS | 3328 | 3419 | 3328 | ID=Msa1462130-mRNA-1:cds;Parent=Msa1462130-mRNA-1 |
| tig0041938 | CDS | 5454 | 5554 | 5454 | ID=Msa1462130-mRNA-1:cds;Parent=Msa1462130-mRNA-1 |
| tig0041938 | CDS | 6244 | 6352 | 6244 | ID=Msa1462130-mRNA-1:cds;Parent=Msa1462130-mRNA-1 |
| tig0041938 | CDS | 6538 | 6588 | 6538 | ID=Msa1462130-mRNA-1:cds;Parent=Msa1462130-mRNA-1 |
| tig0041938 | CDS | 8052 | 8132 | 8052 | ID=Msa1462130-mRNA-1:cds;Parent=Msa1462130-mRNA-1 |
| tig0041938 | three_prime_UTR | 8133 | 8661 | 8133 | ID=Msa1462130-mRNA-1:three_prime_utr;Parent=Msa1462130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
