Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821450 | XP_024639473.1 | 85.616 | 292 | 4 | 2 | 1 | 255 | 1 | 291 | 9.28e-175 | 493 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821450 | sp|Q93WI0|STR12_ARATH | 58.252 | 206 | 51 | 1 | 85 | 255 | 94 | 299 | 1.60e-81 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821450 | I3T1X2 | 85.616 | 292 | 4 | 2 | 1 | 255 | 1 | 291 | 4.43e-175 | 493 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0018870 | Msa0821450 | 0.822830 | 1.920547e-53 | -8.615850e-47 |
| Msa0055530 | Msa0821450 | 0.821039 | 4.989987e-53 | -8.615850e-47 |
| Msa0083160 | Msa0821450 | 0.816594 | 5.102294e-52 | -8.615850e-47 |
| Msa0606140 | Msa0821450 | 0.824715 | 6.944113e-54 | -8.615850e-47 |
| Msa0607300 | Msa0821450 | 0.805488 | 1.303202e-49 | -8.615850e-47 |
| Msa0623270 | Msa0821450 | 0.804566 | 2.031124e-49 | -8.615850e-47 |
| Msa0650360 | Msa0821450 | 0.801874 | 7.329669e-49 | -8.615850e-47 |
| Msa0690350 | Msa0821450 | 0.809317 | 2.008366e-50 | -8.615850e-47 |
| Msa0702070 | Msa0821450 | 0.811470 | 6.891461e-51 | -8.615850e-47 |
| Msa0702120 | Msa0821450 | 0.808333 | 3.261556e-50 | -8.615850e-47 |
| Msa0709480 | Msa0821450 | 0.817105 | 3.917577e-52 | -8.615850e-47 |
| Msa0760950 | Msa0821450 | 0.811040 | 8.542743e-51 | -8.615850e-47 |
| Msa0790830 | Msa0821450 | 0.832509 | 9.079636e-56 | -8.615850e-47 |
| Msa0817810 | Msa0821450 | 0.815564 | 8.666303e-52 | -8.615850e-47 |
| Msa0821450 | Msa0833630 | 0.810588 | 1.069923e-50 | -8.615850e-47 |
| Msa0821450 | Msa0863250 | 0.802213 | 6.240960e-49 | -8.615850e-47 |
| Msa0821450 | Msa0901140 | 0.834822 | 2.399509e-56 | -8.615850e-47 |
| Msa0821450 | Msa0966410 | 0.803911 | 2.780273e-49 | -8.615850e-47 |
| Msa0821450 | Msa1000470 | 0.805827 | 1.106101e-49 | -8.615850e-47 |
| Msa0821450 | Msa1028780 | 0.816054 | 6.739459e-52 | -8.615850e-47 |
| Msa0821450 | Msa1029320 | 0.818177 | 2.246387e-52 | -8.615850e-47 |
| Msa0821450 | Msa1029430 | 0.810687 | 1.018536e-50 | -8.615850e-47 |
| Msa0821450 | Msa1030440 | 0.809612 | 1.736464e-50 | -8.615850e-47 |
| Msa0821450 | Msa1070900 | 0.811020 | 8.625248e-51 | -8.615850e-47 |
| Msa0821450 | Msa1081850 | 0.827354 | 1.638790e-54 | -8.615850e-47 |
| Msa0821450 | Msa1125780 | 0.814099 | 1.830453e-51 | -8.615850e-47 |
| Msa0821450 | Msa1125950 | 0.809022 | 2.323168e-50 | -8.615850e-47 |
| Msa0821450 | Msa1132820 | 0.802668 | 5.029070e-49 | -8.615850e-47 |
| Msa0821450 | Msa1145370 | 0.804148 | 2.482290e-49 | -8.615850e-47 |
| Msa0821450 | Msa1151120 | 0.800584 | 1.345644e-48 | -8.615850e-47 |
| Msa0821450 | Msa1171340 | 0.816670 | 4.907160e-52 | -8.615850e-47 |
| Msa0821450 | Msa1183730 | 0.824675 | 7.099186e-54 | -8.615850e-47 |
| Msa0821450 | Msa1206440 | 0.814207 | 1.732398e-51 | -8.615850e-47 |
| Msa0821450 | Msa1220740 | 0.802221 | 6.217500e-49 | -8.615850e-47 |
| Msa0821450 | Msa1222390 | 0.800410 | 1.460204e-48 | -8.615850e-47 |
| Msa0821450 | Msa1222580 | 0.804362 | 2.240119e-49 | -8.615850e-47 |
| Msa0821450 | Msa1237750 | 0.807187 | 5.712677e-50 | -8.615850e-47 |
| Msa0821450 | Msa1238700 | 0.825404 | 4.775165e-54 | -8.615850e-47 |
| Msa0821450 | Msa1238710 | 0.830393 | 3.012232e-55 | -8.615850e-47 |
| Msa0821450 | Msa1258940 | 0.810127 | 1.345323e-50 | -8.615850e-47 |
| Msa0821450 | Msa1291140 | 0.810749 | 9.872426e-51 | -8.615850e-47 |
| Msa0821450 | Msa1291400 | 0.813444 | 2.551382e-51 | -8.615850e-47 |
| Msa0821450 | Msa1293530 | 0.825184 | 5.384252e-54 | -8.615850e-47 |
| Msa0821450 | Msa1305650 | 0.805094 | 1.575760e-49 | -8.615850e-47 |
| Msa0821450 | Msa1316720 | 0.804857 | 1.766030e-49 | -8.615850e-47 |
| Msa0821450 | Msa1334650 | 0.804884 | 1.743672e-49 | -8.615850e-47 |
| Msa0821450 | Msa1336080 | 0.807236 | 5.577469e-50 | -8.615850e-47 |
| Msa0821450 | Msa1341790 | 0.806157 | 9.427384e-50 | -8.615850e-47 |
| Msa0821450 | Msa1345470 | 0.802672 | 5.020051e-49 | -8.615850e-47 |
| Msa0821450 | Msa1349360 | 0.801047 | 1.082438e-48 | -8.615850e-47 |
| Msa0821450 | Msa1388610 | 0.811004 | 8.693766e-51 | -8.615850e-47 |
| Msa0821450 | Msa1397110 | 0.822734 | 2.021668e-53 | -8.615850e-47 |
| Msa0821450 | Msa1403900 | 0.825851 | 3.741099e-54 | -8.615850e-47 |
| Msa0821450 | Msa1422490 | 0.805943 | 1.045616e-49 | -8.615850e-47 |
| Msa0821450 | Msa1435470 | 0.814126 | 1.806015e-51 | -8.615850e-47 |
| Msa0821450 | Msa1435910 | 0.816200 | 6.251501e-52 | -8.615850e-47 |
| Msa0821450 | Msa1437320 | 0.811597 | 6.466924e-51 | -8.615850e-47 |
| Msa0821450 | Msa1458330 | 0.810366 | 1.194596e-50 | -8.615850e-47 |
| Msa0821450 | Msa1458920 | 0.813884 | 2.042003e-51 | -8.615850e-47 |
| Msa0821450 | Msa1462130 | 0.922533 | 8.685572e-89 | -8.615850e-47 |
| Msa0131390 | Msa0821450 | 0.800024 | 1.749965e-48 | -8.615850e-47 |
| Msa0143980 | Msa0821450 | 0.815394 | 9.456045e-52 | -8.615850e-47 |
| Msa0149630 | Msa0821450 | 0.807836 | 4.161044e-50 | -8.615850e-47 |
| Msa0155540 | Msa0821450 | 0.818335 | 2.068684e-52 | -8.615850e-47 |
| Msa0173760 | Msa0821450 | 0.800535 | 1.377237e-48 | -8.615850e-47 |
| Msa0175530 | Msa0821450 | 0.804309 | 2.297685e-49 | -8.615850e-47 |
| Msa0181010 | Msa0821450 | 0.803919 | 2.770168e-49 | -8.615850e-47 |
| Msa0181020 | Msa0821450 | 0.803789 | 2.947192e-49 | -8.615850e-47 |
| Msa0183490 | Msa0821450 | 0.801792 | 7.618936e-49 | -8.615850e-47 |
| Msa0185550 | Msa0821450 | 0.806342 | 8.617723e-50 | -8.615850e-47 |
| Msa0218860 | Msa0821450 | 0.813361 | 2.660681e-51 | -8.615850e-47 |
| Msa0226800 | Msa0821450 | 0.805937 | 1.048971e-49 | -8.615850e-47 |
| Msa0376900 | Msa0821450 | 0.819634 | 1.047527e-52 | -8.615850e-47 |
| Msa0380360 | Msa0821450 | 0.826734 | 2.305771e-54 | -8.615850e-47 |
| Msa0382500 | Msa0821450 | 0.805025 | 1.629224e-49 | -8.615850e-47 |
| Msa0383570 | Msa0821450 | 0.809042 | 2.300202e-50 | -8.615850e-47 |
| Msa0387790 | Msa0821450 | 0.806890 | 6.602861e-50 | -8.615850e-47 |
| Msa0398850 | Msa0821450 | 0.802061 | 6.707412e-49 | -8.615850e-47 |
| Msa0426480 | Msa0821450 | 0.814488 | 1.501664e-51 | -8.615850e-47 |
| Msa0432680 | Msa0821450 | 0.813333 | 2.698729e-51 | -8.615850e-47 |
| Msa0434630 | Msa0821450 | 0.826434 | 2.718377e-54 | -8.615850e-47 |
| Msa0446480 | Msa0821450 | 0.806475 | 8.080409e-50 | -8.615850e-47 |
| Msa0467080 | Msa0821450 | 0.817076 | 3.977218e-52 | -8.615850e-47 |
| Msa0471890 | Msa0821450 | 0.820398 | 7.006747e-53 | -8.615850e-47 |
| Msa0476150 | Msa0821450 | 0.813811 | 2.119105e-51 | -8.615850e-47 |
| Msa0476180 | Msa0821450 | 0.831083 | 2.040932e-55 | -8.615850e-47 |
| Msa0280140 | Msa0821450 | 0.826551 | 2.549116e-54 | -8.615850e-47 |
| Msa0282860 | Msa0821450 | 0.822565 | 2.213039e-53 | -8.615850e-47 |
| Msa0308430 | Msa0821450 | 0.811649 | 6.297909e-51 | -8.615850e-47 |
| Msa0350910 | Msa0821450 | 0.801690 | 7.993798e-49 | -8.615850e-47 |
| Msa0512310 | Msa0821450 | 0.818291 | 2.116715e-52 | -8.615850e-47 |
| Msa0528740 | Msa0821450 | 0.809549 | 1.791401e-50 | -8.615850e-47 |
| Msa0542040 | Msa0821450 | 0.809978 | 1.448236e-50 | -8.615850e-47 |
| Msa0579610 | Msa0821450 | 0.806500 | 7.983573e-50 | -8.615850e-47 |
| Msa0595780 | Msa0821450 | 0.804004 | 2.660345e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821450 | MtrunA17_Chr5g0441701 | 85.616 | 292 | 4 | 2 | 1 | 255 | 1 | 291 | 8.54e-179 | 493 |
| Msa0821450 | MtrunA17_Chr5g0441711 | 67.873 | 221 | 34 | 1 | 72 | 255 | 7 | 227 | 4.95e-107 | 310 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0821450 | AT5G19370.1 | 58.252 | 206 | 51 | 1 | 85 | 255 | 94 | 299 | 1.62e-82 | 249 |
Find 98 sgRNAs with CRISPR-Local
Find 489 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTTATTGGTCTAGATTT+AGG | 0.197984 | 5_3:-59604763 | None:intergenic |
| GTTCTTCCCCTTCGACAATT+TGG | 0.223205 | 5_3:+59602730 | Msa0821450:CDS |
| TCAAATTTCGAATTTATTTC+AGG | 0.228249 | 5_3:-59602763 | None:intergenic |
| GAGAAGAAGGTGAGTGAAAA+TGG | 0.233939 | 5_3:-59599047 | None:intergenic |
| GCAGCAAGTGCCATCCAAAT+TGG | 0.249194 | 5_3:-59601974 | None:intergenic |
| CGCATCTTTGCCAGGATTTA+CGG | 0.253996 | 5_3:+59602708 | Msa0821450:CDS |
| GTATGAAAATGTGTTTATTC+TGG | 0.263966 | 5_3:+59604788 | Msa0821450:three_prime_UTR |
| TTGTAGCAGTTCACACTCTT+TGG | 0.280638 | 5_3:+59604669 | Msa0821450:three_prime_UTR |
| AGTGATTGAGATTGTTAAAA+TGG | 0.287308 | 5_3:+59605031 | Msa0821450:three_prime_UTR |
| TCATGGAGTGCGGTCGTTAC+AGG | 0.294522 | 5_3:+59602990 | Msa0821450:CDS |
| GTACGGTGCAAGACCCAATT+TGG | 0.307918 | 5_3:+59601960 | Msa0821450:CDS |
| CTAAATTTACTATTTCCTTT+TGG | 0.314850 | 5_3:-59604732 | None:intergenic |
| ATTCCTCCTTCATCTTTAGA+AGG | 0.322517 | 5_3:-59599827 | None:intergenic |
| TGTCAATGTTTCAGGGGTTC+AGG | 0.333608 | 5_3:+59604485 | Msa0821450:intron |
| GTGGAAAGTGAAGAGAGTTT+TGG | 0.337549 | 5_3:-59598946 | None:intergenic |
| TTGCTTCTTCTGCTTTGCTT+TGG | 0.343853 | 5_3:-59598885 | None:intergenic |
| AGGAAAGTATACAATATTTC+CGG | 0.359015 | 5_3:+59604505 | Msa0821450:CDS |
| CCCTTCGACAATTTGGAACC+TGG | 0.365020 | 5_3:+59602737 | Msa0821450:CDS |
| AAATCTAGACCAATAAATAT+TGG | 0.370149 | 5_3:+59604766 | Msa0821450:three_prime_UTR |
| AACGCAGCCTCCTCAAATTC+AGG | 0.380340 | 5_3:-59601915 | None:intergenic |
| GAATGTGTACCTGATGCTTT+AGG | 0.405912 | 5_3:-59599102 | None:intergenic |
| GGAGGCATGGTTGAAGTAAA+GGG | 0.411655 | 5_3:-59599081 | None:intergenic |
| TCAAAAGGATACATATGTTC+TGG | 0.432724 | 5_3:+59602789 | Msa0821450:CDS |
| AATGCTTGGGTGGGTGAGAA+AGG | 0.432884 | 5_3:+59599847 | Msa0821450:CDS |
| CAAAACCTTGATCTCATGTA+AGG | 0.440131 | 5_3:-59604626 | None:intergenic |
| ACGCAGACATAAACAATTGT+AGG | 0.441170 | 5_3:-59604934 | None:intergenic |
| ATTTGCCCTTCTAAAGATGA+AGG | 0.442677 | 5_3:+59599821 | Msa0821450:CDS |
| TGCCAGGTGGTTGCAGTCAC+AGG | 0.448047 | 5_3:+59603014 | Msa0821450:CDS |
| TTCGAAATTTGATCCTCAAA+AGG | 0.452504 | 5_3:+59602774 | Msa0821450:CDS |
| TGGAGCGGAAAGGGAACTAT+TGG | 0.454068 | 5_3:+59599279 | Msa0821450:CDS |
| AAAGAGAAAGAGAAGATTGA+AGG | 0.455645 | 5_3:-59598973 | None:intergenic |
| AGAGAAGATTGAAGGAATTG+TGG | 0.455952 | 5_3:-59598965 | None:intergenic |
| TATTCTGGATCAAGAATTGA+AGG | 0.458598 | 5_3:+59604803 | Msa0821450:three_prime_UTR |
| AGGAGGCATGGTTGAAGTAA+AGG | 0.461856 | 5_3:-59599082 | None:intergenic |
| CAGCAAGTGCCATCCAAATT+GGG | 0.464431 | 5_3:-59601973 | None:intergenic |
| AGAAGATGACTCGAAACTAT+TGG | 0.464745 | 5_3:+59599321 | Msa0821450:CDS |
| AAAGATGAAGGAGGAATGCT+TGG | 0.466709 | 5_3:+59599833 | Msa0821450:CDS |
| CGAATTTATTTCAGGTCCCC+AGG | 0.474986 | 5_3:-59602755 | None:intergenic |
| GGTGAAAGAGGAAGAGAAGA+AGG | 0.488861 | 5_3:-59599060 | None:intergenic |
| CCTTCGACAATTTGGAACCT+GGG | 0.490723 | 5_3:+59602738 | Msa0821450:CDS |
| ACTATTGGTGCAGCATTTGT+TGG | 0.490771 | 5_3:+59599294 | Msa0821450:CDS |
| TGTTGAAGGTGGAGCGGAAA+GGG | 0.494453 | 5_3:+59599270 | Msa0821450:CDS |
| AGAGGGTAATGGAATTGAAA+AGG | 0.498481 | 5_3:-59604961 | None:intergenic |
| ACCATGCCTCCTAAAGCATC+AGG | 0.500931 | 5_3:+59599093 | Msa0821450:CDS |
| CGCATAGGCATGAATTCCTC+CGG | 0.502603 | 5_3:-59604524 | None:intergenic |
| GTGGGTGAGAAAGGGACAAA+TGG | 0.503662 | 5_3:+59599856 | Msa0821450:CDS |
| AGGACCACCGCATCTTTGCC+AGG | 0.505532 | 5_3:+59602700 | Msa0821450:intron |
| GCAACAGGTTCCTGAATTTG+AGG | 0.506375 | 5_3:+59601905 | Msa0821450:intron |
| ACCTGATGCTTTAGGAGGCA+TGG | 0.513684 | 5_3:-59599094 | None:intergenic |
| GTTGAAGTAAAGGGTGAAAG+AGG | 0.515919 | 5_3:-59599072 | None:intergenic |
| AATCATGTAATTCAGTATGT+AGG | 0.517168 | 5_3:-59604568 | None:intergenic |
| TTCTGAATGCAGTGTCATCA+TGG | 0.518008 | 5_3:+59602973 | Msa0821450:intron |
| ATGCTTGGGTGGGTGAGAAA+GGG | 0.521007 | 5_3:+59599848 | Msa0821450:CDS |
| AGGGGAAGAACCGTAAATCC+TGG | 0.530255 | 5_3:-59602718 | None:intergenic |
| TTCCTCCTTCATCTTTAGAA+GGG | 0.530879 | 5_3:-59599826 | None:intergenic |
| AGAAGGTGAGTGAAAATGGA+AGG | 0.531242 | 5_3:-59599043 | None:intergenic |
| ATGAAGGAGGAATGCTTGGG+TGG | 0.532984 | 5_3:+59599837 | Msa0821450:CDS |
| CACCTTTAAACAAAATTGTA+CGG | 0.534323 | 5_3:+59601943 | Msa0821450:CDS |
| AAAGTAACAGTTAGATGCAG+AGG | 0.536034 | 5_3:-59604892 | None:intergenic |
| GGTTCACGAATAATACCAAA+AGG | 0.544515 | 5_3:+59604717 | Msa0821450:three_prime_UTR |
| TATTGGTCTAGATTTAGGTA+AGG | 0.551876 | 5_3:-59604758 | None:intergenic |
| ACTGGAGGTAGTGCTGTTGA+AGG | 0.553456 | 5_3:+59599256 | Msa0821450:CDS |
| AATTCATGCCTATGCGGTGA+AGG | 0.566762 | 5_3:+59604531 | Msa0821450:CDS |
| CTTCAACAGAGAGTCGCTGC+AGG | 0.568939 | 5_3:+59599349 | Msa0821450:CDS |
| CCCAGGTTCCAAATTGTCGA+AGG | 0.575644 | 5_3:-59602738 | None:intergenic |
| AGAAATTCCATGGAAAGTAG+AGG | 0.577050 | 5_3:+59605068 | Msa0821450:three_prime_UTR |
| TACCTGTGACTGCAACCACC+TGG | 0.579154 | 5_3:-59603016 | None:intergenic |
| GGAAAACCACACAGACAGAG+AGG | 0.589995 | 5_3:-59605004 | None:intergenic |
| AGAGCTTGTCAATTTCGCGT+TGG | 0.593887 | 5_3:+59598913 | Msa0821450:CDS |
| GAAGGTGAGTGAAAATGGAA+GGG | 0.604292 | 5_3:-59599042 | None:intergenic |
| ATTCAGTATGTAGGAACTGA+CGG | 0.605517 | 5_3:-59604559 | None:intergenic |
| TTACATATCAGGTCCCTACA+AGG | 0.605845 | 5_3:+59604857 | Msa0821450:three_prime_UTR |
| CCAGGTTCCAAATTGTCGAA+GGG | 0.607753 | 5_3:-59602737 | None:intergenic |
| GGTGCAAGACCCAATTTGGA+TGG | 0.609238 | 5_3:+59601964 | Msa0821450:CDS |
| AAGATGAAGGAGGAATGCTT+GGG | 0.609792 | 5_3:+59599834 | Msa0821450:CDS |
| CTGTTGAAGGTGGAGCGGAA+AGG | 0.610200 | 5_3:+59599269 | Msa0821450:CDS |
| TGAAGGAGGAATGCTTGGGT+GGG | 0.612721 | 5_3:+59599838 | Msa0821450:CDS |
| TTAGCTTCATATAGTACTGG+AGG | 0.616381 | 5_3:+59599241 | Msa0821450:intron |
| AAATGCTCACATGCAAGGAG+AGG | 0.619913 | 5_3:-59604601 | None:intergenic |
| TGTGGCCCTCTCTGTCTGTG+TGG | 0.621679 | 5_3:+59604998 | Msa0821450:three_prime_UTR |
| CGGATCGACCTTCACCGCAT+AGG | 0.626059 | 5_3:-59604539 | None:intergenic |
| GGAGGTAGTGCTGTTGAAGG+TGG | 0.627503 | 5_3:+59599259 | Msa0821450:CDS |
| CTTCGACAATTTGGAACCTG+GGG | 0.627728 | 5_3:+59602739 | Msa0821450:CDS |
| TGCCCTTCTAAAGATGAAGG+AGG | 0.628170 | 5_3:+59599824 | Msa0821450:CDS |
| TGTGTACCTGATGCTTTAGG+AGG | 0.630800 | 5_3:-59599099 | None:intergenic |
| CGTAAATCCTGGCAAAGATG+CGG | 0.636689 | 5_3:-59602707 | None:intergenic |
| AAAGTATACAATATTTCCGG+AGG | 0.640010 | 5_3:+59604508 | Msa0821450:CDS |
| ACAGGTTCCTGAATTTGAGG+AGG | 0.641312 | 5_3:+59601908 | Msa0821450:intron |
| CAGGTTCCAAATTGTCGAAG+GGG | 0.646858 | 5_3:-59602736 | None:intergenic |
| TACAATTGTTTATGTCTGCG+TGG | 0.648212 | 5_3:+59604936 | Msa0821450:three_prime_UTR |
| AAATCCTGGCAAAGATGCGG+TGG | 0.648291 | 5_3:-59602704 | None:intergenic |
| CGGAGGAATTCATGCCTATG+CGG | 0.649137 | 5_3:+59604525 | Msa0821450:CDS |
| CACATGCAAGGAGAGGAAAG+TGG | 0.651407 | 5_3:-59604594 | None:intergenic |
| TAGTGCTGTTGAAGGTGGAG+CGG | 0.654292 | 5_3:+59599264 | Msa0821450:CDS |
| AGATTTGAGTGATCTTGCTG+TGG | 0.658077 | 5_3:+59599790 | Msa0821450:CDS |
| GAAAACCACACAGACAGAGA+GGG | 0.662391 | 5_3:-59605003 | None:intergenic |
| GGTCGTTACAGGTTGCCAGG+TGG | 0.689459 | 5_3:+59603001 | Msa0821450:CDS |
| TGCAGTGTCATCATGGAGTG+CGG | 0.698018 | 5_3:+59602980 | Msa0821450:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATGAAAAATAAAAAGT+GGG | - | chr5_3:59599137-59599156 | None:intergenic | 10.0% |
| !! | AAAAAATGAAAAATAAAAAG+TGG | - | chr5_3:59599138-59599157 | None:intergenic | 10.0% |
| !!! | AATTTGATTTTTATTTTTGT+TGG | + | chr5_3:59599209-59599228 | Msa0821450:intron | 10.0% |
| !! | AATAAATTATTAAATGAATC+AGG | + | chr5_3:59601228-59601247 | Msa0821450:intron | 10.0% |
| !! | ATAAATTATTAAATGAATCA+GGG | + | chr5_3:59601229-59601248 | Msa0821450:intron | 10.0% |
| !!! | TATCTTTTTTAATTTTGAAA+AGG | - | chr5_3:59603205-59603224 | None:intergenic | 10.0% |
| !!! | AAAATTACACTTTTATAACT+AGG | - | chr5_3:59600174-59600193 | None:intergenic | 15.0% |
| !!! | ATATTTGTAAATTGCTTTTA+AGG | + | chr5_3:59603166-59603185 | Msa0821450:intron | 15.0% |
| !!! | ATTTTCATACCAATATTTAT+TGG | - | chr5_3:59604778-59604797 | None:intergenic | 15.0% |
| !! | AAAAATTAAGATTACATATC+AGG | + | chr5_3:59604846-59604865 | Msa0821450:three_prime_UTR | 15.0% |
| !! | GAGAAAATAGAATAATTGAA+CGG | + | chr5_3:59599453-59599472 | Msa0821450:intron | 20.0% |
| !! | TATCAAATTATTAGTAGTGT+CGG | - | chr5_3:59599531-59599550 | None:intergenic | 20.0% |
| !!! | ATAAACATACCAATTTTTTG+AGG | + | chr5_3:59601013-59601032 | Msa0821450:intron | 20.0% |
| !!! | TAAACATACCAATTTTTTGA+GGG | + | chr5_3:59601014-59601033 | Msa0821450:intron | 20.0% |
| !! | TATTGTGGTTCATAAAATTT+GGG | - | chr5_3:59601845-59601864 | None:intergenic | 20.0% |
| !! | ATATTCAATGAATTTCACAT+TGG | - | chr5_3:59602066-59602085 | None:intergenic | 20.0% |
| !! | TGTGAAATTCATTGAATATT+TGG | + | chr5_3:59602067-59602086 | Msa0821450:intron | 20.0% |
| !! | ATTAAAACAAACAACTAATC+GGG | - | chr5_3:59602155-59602174 | None:intergenic | 20.0% |
| !! | CATTAAAACAAACAACTAAT+CGG | - | chr5_3:59602156-59602175 | None:intergenic | 20.0% |
| !! | ATTAATTGAGCAAATTTACA+AGG | - | chr5_3:59602190-59602209 | None:intergenic | 20.0% |
| !!! | AGTTAAAAGTTGATGAAAAT+AGG | - | chr5_3:59602337-59602356 | None:intergenic | 20.0% |
| !! | TCAAATTTCGAATTTATTTC+AGG | - | chr5_3:59602766-59602785 | None:intergenic | 20.0% |
| !! | CAAAATAAAGATGAATGAAT+TGG | - | chr5_3:59602873-59602892 | None:intergenic | 20.0% |
| !!! | TTTTTTTTTTTTTCTCTCTC+TGG | + | chr5_3:59602926-59602945 | Msa0821450:intron | 20.0% |
| !! | TCACAATGTGTATAAATAAT+AGG | + | chr5_3:59604274-59604293 | Msa0821450:intron | 20.0% |
| !! | AATGTGTATAAATAATAGGA+TGG | + | chr5_3:59604278-59604297 | Msa0821450:intron | 20.0% |
| !!! | TTGCTATTGTATGTAATAAA+TGG | + | chr5_3:59604376-59604395 | Msa0821450:intron | 20.0% |
| !! | CATAGAAAACAATATATGAT+AGG | - | chr5_3:59604443-59604462 | None:intergenic | 20.0% |
| !!! | TTTGGAAATTTCAACTTTTA+CGG | + | chr5_3:59604687-59604706 | Msa0821450:three_prime_UTR | 20.0% |
| !!! | CTAAATTTACTATTTCCTTT+TGG | - | chr5_3:59604735-59604754 | None:intergenic | 20.0% |
| !!! | ATATTTATTGGTCTAGATTT+AGG | - | chr5_3:59604766-59604785 | None:intergenic | 20.0% |
| !! | AAATCTAGACCAATAAATAT+TGG | + | chr5_3:59604766-59604785 | Msa0821450:three_prime_UTR | 20.0% |
| !!! | ACATAAATTTTTGAAAGAGA+GGG | - | chr5_3:59604981-59605000 | None:intergenic | 20.0% |
| !!! | ATTGTTAAAATGGTGATTTT+TGG | + | chr5_3:59605041-59605060 | Msa0821450:three_prime_UTR | 20.0% |
| !!! | TTTTTAGCTTCATATAGTAC+TGG | + | chr5_3:59599238-59599257 | Msa0821450:intron | 25.0% |
| ! | TGTTTGTATCATTGTTTGAA+TGG | + | chr5_3:59599418-59599437 | Msa0821450:intron | 25.0% |
| ! | ATTTGTGAAGTTTCTTTCTA+AGG | + | chr5_3:59599736-59599755 | Msa0821450:intron | 25.0% |
| ! | ATTGAAAAATCCTAAGAACA+GGG | - | chr5_3:59599908-59599927 | None:intergenic | 25.0% |
| ! | AATTGAAAAATCCTAAGAAC+AGG | - | chr5_3:59599909-59599928 | None:intergenic | 25.0% |
| ! | AAGTCAGTTTCATTTACATA+AGG | - | chr5_3:59599987-59600006 | None:intergenic | 25.0% |
| !!! | ACGTGTCTTATTTATATGAA+TGG | - | chr5_3:59601272-59601291 | None:intergenic | 25.0% |
| ! | ATTCATATAAATAAGACACG+TGG | + | chr5_3:59600609-59600628 | Msa0821450:intron | 25.0% |
| !!! | AAACATACCAATTTTTTGAG+GGG | + | chr5_3:59601015-59601034 | Msa0821450:intron | 25.0% |
| ! | CGTGGAAAAATAAAAATCAA+TGG | - | chr5_3:59601255-59601274 | None:intergenic | 25.0% |
| ! | ATTCATATAAATAAGACACG+TGG | - | chr5_3:59600609-59600628 | None:intergenic | 25.0% |
| !!! | ACGTGTCTTATTTATATGAA+TGG | + | chr5_3:59601272-59601291 | Msa0821450:intron | 25.0% |
| ! | TTTATTTGCTTTCGTCTAAT+AGG | + | chr5_3:59601514-59601533 | Msa0821450:intron | 25.0% |
| !!! | ATTACTTCTCTCTTTTAAGT+TGG | + | chr5_3:59601636-59601655 | Msa0821450:intron | 25.0% |
| !!! | TTACTTCTCTCTTTTAAGTT+GGG | + | chr5_3:59601637-59601656 | Msa0821450:intron | 25.0% |
| !!! | ACAAGTCAAGTTGATTTTAT+AGG | + | chr5_3:59601804-59601823 | Msa0821450:intron | 25.0% |
| !!! | CAAGTCAAGTTGATTTTATA+GGG | + | chr5_3:59601805-59601824 | Msa0821450:intron | 25.0% |
| ! | CTATTGTGGTTCATAAAATT+TGG | - | chr5_3:59601846-59601865 | None:intergenic | 25.0% |
| ! | TCTAATTATGAAAATGCAAC+AGG | + | chr5_3:59601890-59601909 | Msa0821450:intron | 25.0% |
| ! | CACCTTTAAACAAAATTGTA+CGG | + | chr5_3:59601943-59601962 | Msa0821450:CDS | 25.0% |
| ! | TTGGATCAAACAATCAAATA+GGG | - | chr5_3:59602104-59602123 | None:intergenic | 25.0% |
| ! | ATTGGATCAAACAATCAAAT+AGG | - | chr5_3:59602105-59602124 | None:intergenic | 25.0% |
| ! | ATATCCATGAGATATCAAAA+GGG | - | chr5_3:59602543-59602562 | None:intergenic | 25.0% |
| ! | AGACAGATAACTGAATAAAA+CGG | + | chr5_3:59603241-59603260 | Msa0821450:intron | 25.0% |
| !!! | ACAACACAGACTTTAATTTT+GGG | - | chr5_3:59603304-59603323 | None:intergenic | 25.0% |
| !!! | TACAACACAGACTTTAATTT+TGG | - | chr5_3:59603305-59603324 | None:intergenic | 25.0% |
| ! | AATTAGAAAACAATGACTAC+AGG | - | chr5_3:59603560-59603579 | None:intergenic | 25.0% |
| ! | TCTAATTGTAACTAACTAAG+GGG | - | chr5_3:59603625-59603644 | None:intergenic | 25.0% |
| ! | GTCTAATTGTAACTAACTAA+GGG | - | chr5_3:59603626-59603645 | None:intergenic | 25.0% |
| ! | TGTCTAATTGTAACTAACTA+AGG | - | chr5_3:59603627-59603646 | None:intergenic | 25.0% |
| ! | TAAAAAATTGTATTGGAGGA+GGG | - | chr5_3:59604071-59604090 | None:intergenic | 25.0% |
| ! | GAACTAAAAAATTGTATTGG+AGG | - | chr5_3:59604075-59604094 | None:intergenic | 25.0% |
| ! | TGAAAGAAATAGAGGAAAAT+GGG | - | chr5_3:59604157-59604176 | None:intergenic | 25.0% |
| !! | AGGAAAGTATACAATATTTC+CGG | + | chr5_3:59604505-59604524 | Msa0821450:CDS | 25.0% |
| ! | AATCATGTAATTCAGTATGT+AGG | - | chr5_3:59604571-59604590 | None:intergenic | 25.0% |
| ! | GTATGAAAATGTGTTTATTC+TGG | + | chr5_3:59604788-59604807 | Msa0821450:three_prime_UTR | 25.0% |
| !!! | CACATAAATTTTTGAAAGAG+AGG | - | chr5_3:59604982-59605001 | None:intergenic | 25.0% |
| ! | CTCTCTTTCAAAAATTTATG+TGG | + | chr5_3:59604980-59604999 | Msa0821450:three_prime_UTR | 25.0% |
| !!! | TAACAATCTCAATCACTTTT+AGG | - | chr5_3:59605028-59605047 | None:intergenic | 25.0% |
| ! | AGTGATTGAGATTGTTAAAA+TGG | + | chr5_3:59605031-59605050 | Msa0821450:three_prime_UTR | 25.0% |
| !!! | TTTTGGTTTTAGAAATTCCA+TGG | + | chr5_3:59605058-59605077 | Msa0821450:three_prime_UTR | 25.0% |
| AAAGAGAAAGAGAAGATTGA+AGG | - | chr5_3:59598976-59598995 | None:intergenic | 30.0% | |
| !!! | ATTTTGGAATGAGAATGTGA+AGG | - | chr5_3:59599000-59599019 | None:intergenic | 30.0% |
| !!! | GTTTTTTGTAGGAAAAAGTG+TGG | - | chr5_3:59599023-59599042 | None:intergenic | 30.0% |
| !!! | AAAATGGAAGGGTTTTTTGT+AGG | - | chr5_3:59599034-59599053 | None:intergenic | 30.0% |
| AAACTCTTAACTACGTCAAT+AGG | - | chr5_3:59599175-59599194 | None:intergenic | 30.0% | |
| TTTAACTAAACCCTGTTCTT+AGG | + | chr5_3:59599895-59599914 | Msa0821450:intron | 30.0% | |
| ! | ATTTGTCTAGATTTTGCAGT+TGG | + | chr5_3:59599926-59599945 | Msa0821450:intron | 30.0% |
| ! | GTTACAGTTGATATACATCA+CGG | + | chr5_3:59599961-59599980 | Msa0821450:intron | 30.0% |
| ATAGTTGTATGAAGTTTCTG+TGG | + | chr5_3:59600027-59600046 | Msa0821450:intron | 30.0% | |
| TAGTTGTATGAAGTTTCTGT+GGG | + | chr5_3:59600028-59600047 | Msa0821450:intron | 30.0% | |
| ATTGTTGGAAACCTTAATTG+TGG | + | chr5_3:59600210-59600229 | Msa0821450:intron | 30.0% | |
| CTAATTCAACCCTACAAAAT+CGG | - | chr5_3:59600397-59600416 | None:intergenic | 30.0% | |
| GTGGAAAAATAAGATCTCAA+TGG | + | chr5_3:59600628-59600647 | Msa0821450:intron | 30.0% | |
| AGTTGTAATACAGTAGTCAA+CGG | - | chr5_3:59600783-59600802 | None:intergenic | 30.0% | |
| !!! | TTTCGTAATCTACTGGTTTT+GGG | + | chr5_3:59600931-59600950 | Msa0821450:intron | 30.0% |
| TAATCACAACCAAATTGAGT+TGG | + | chr5_3:59600966-59600985 | Msa0821450:intron | 30.0% | |
| ! | CTTTTATCCCCTCAAAAAAT+TGG | - | chr5_3:59601025-59601044 | None:intergenic | 30.0% |
| !!! | CAATTTTTTGAGGGGATAAA+AGG | + | chr5_3:59601023-59601042 | Msa0821450:intron | 30.0% |
| ! | AGTGACGAAAATCTCATTTT+TGG | + | chr5_3:59601081-59601100 | Msa0821450:intron | 30.0% |
| !!! | CTGTTGTGTTTTAGTTTAGT+GGG | + | chr5_3:59601482-59601501 | Msa0821450:intron | 30.0% |
| !! | TATTTCTTTTGTTTGAGGAG+TGG | + | chr5_3:59601610-59601629 | Msa0821450:intron | 30.0% |
| !!! | TACTTCTCTCTTTTAAGTTG+GGG | + | chr5_3:59601638-59601657 | Msa0821450:intron | 30.0% |
| ATCACATAACTGTACTATTG+TGG | - | chr5_3:59601860-59601879 | None:intergenic | 30.0% | |
| CAATAGTACAGTTATGTGAT+TGG | + | chr5_3:59601860-59601879 | Msa0821450:intron | 30.0% | |
| !! | CACCGTACAATTTTGTTTAA+AGG | - | chr5_3:59601948-59601967 | None:intergenic | 30.0% |
| ! | AATTTGCTCAATTAATTGCC+AGG | + | chr5_3:59602194-59602213 | Msa0821450:intron | 30.0% |
| ATTTGCTCAATTAATTGCCA+GGG | + | chr5_3:59602195-59602214 | Msa0821450:intron | 30.0% | |
| ! | CATGCTTGTATGATTTGTAT+AGG | + | chr5_3:59602377-59602396 | Msa0821450:intron | 30.0% |
| !! | TTAGTGATGATAAGTTGATG+AGG | + | chr5_3:59602439-59602458 | Msa0821450:intron | 30.0% |
| ! | AATTCCCTTTTGATATCTCA+TGG | + | chr5_3:59602536-59602555 | Msa0821450:intron | 30.0% |
| GATATCCATGAGATATCAAA+AGG | - | chr5_3:59602544-59602563 | None:intergenic | 30.0% | |
| TTCGAAATTTGATCCTCAAA+AGG | + | chr5_3:59602774-59602793 | Msa0821450:CDS | 30.0% | |
| ! | AGAACATATGTATCCTTTTG+AGG | - | chr5_3:59602790-59602809 | None:intergenic | 30.0% |
| TCAAAAGGATACATATGTTC+TGG | + | chr5_3:59602789-59602808 | Msa0821450:CDS | 30.0% | |
| ! | TAGACATGCTTACACTTTTA+AGG | - | chr5_3:59603054-59603073 | None:intergenic | 30.0% |
| CAATATGTGAACAAGTTTCA+AGG | - | chr5_3:59603095-59603114 | None:intergenic | 30.0% | |
| AAGTCTGTGTTGTAAAATAG+CGG | + | chr5_3:59603311-59603330 | Msa0821450:intron | 30.0% | |
| ACTAAATCGTGGAACAATAA+CGG | - | chr5_3:59603371-59603390 | None:intergenic | 30.0% | |
| CCAATTCCAGAAACATATAT+AGG | - | chr5_3:59603505-59603524 | None:intergenic | 30.0% | |
| !! | CCTATATATGTTTCTGGAAT+TGG | + | chr5_3:59603502-59603521 | Msa0821450:intron | 30.0% |
| GAATTGGAACTGACATATTT+AGG | + | chr5_3:59603518-59603537 | Msa0821450:intron | 30.0% | |
| CTAATTGTAACTAACTAAGG+GGG | - | chr5_3:59603624-59603643 | None:intergenic | 30.0% | |
| GTTAGTTACAATTAGACAGT+TGG | + | chr5_3:59603629-59603648 | Msa0821450:intron | 30.0% | |
| CTAAAAAATTGTATTGGAGG+AGG | - | chr5_3:59604072-59604091 | None:intergenic | 30.0% | |
| GGGGAACTAAAAAATTGTAT+TGG | - | chr5_3:59604078-59604097 | None:intergenic | 30.0% | |
| GTGAAAGAAATAGAGGAAAA+TGG | - | chr5_3:59604158-59604177 | None:intergenic | 30.0% | |
| CTAACTACTTGAATCTACTA+AGG | - | chr5_3:59604241-59604260 | None:intergenic | 30.0% | |
| TAAATAATAGGATGGATGTG+AGG | + | chr5_3:59604286-59604305 | Msa0821450:intron | 30.0% | |
| ACAATATATGATAGGAACTG+TGG | - | chr5_3:59604435-59604454 | None:intergenic | 30.0% | |
| !!! | GTATTGACTTTTGATTGTGT+TGG | + | chr5_3:59604462-59604481 | Msa0821450:intron | 30.0% |
| AAAGTATACAATATTTCCGG+AGG | + | chr5_3:59604508-59604527 | Msa0821450:CDS | 30.0% | |
| ! | TTTTTCCTTACATGAGATCA+AGG | + | chr5_3:59604621-59604640 | Msa0821450:three_prime_UTR | 30.0% |
| ! | TATTGGTCTAGATTTAGGTA+AGG | - | chr5_3:59604761-59604780 | None:intergenic | 30.0% |
| TATTCTGGATCAAGAATTGA+AGG | + | chr5_3:59604803-59604822 | Msa0821450:three_prime_UTR | 30.0% | |
| !! | ATTTTTGAAAGAGAGGGTAA+TGG | - | chr5_3:59604975-59604994 | None:intergenic | 30.0% |
| AAAAAAACCTCTACTTTCCA+TGG | - | chr5_3:59605078-59605097 | None:intergenic | 30.0% | |
| !!! | AGTGAAGAGAGTTTTGGAAT+CGG | - | chr5_3:59598943-59598962 | None:intergenic | 35.0% |
| AGAGAAGATTGAAGGAATTG+TGG | - | chr5_3:59598968-59598987 | None:intergenic | 35.0% | |
| !! | GTAGGAAAAAGTGTGGATTT+TGG | - | chr5_3:59599016-59599035 | None:intergenic | 35.0% |
| ! | TTAGCTTCATATAGTACTGG+AGG | + | chr5_3:59599241-59599260 | Msa0821450:intron | 35.0% |
| AGAAGATGACTCGAAACTAT+TGG | + | chr5_3:59599321-59599340 | Msa0821450:CDS | 35.0% | |
| TAACCATATACCATGAAGCA+CGG | + | chr5_3:59599476-59599495 | Msa0821450:intron | 35.0% | |
| GCGAATATAACTATGAAGCA+CGG | - | chr5_3:59599624-59599643 | None:intergenic | 35.0% | |
| GCACTGAGACTTCATATTAA+AGG | - | chr5_3:59599694-59599713 | None:intergenic | 35.0% | |
| TCTCAGTGCTAGATATTTCT+GGG | + | chr5_3:59599705-59599724 | Msa0821450:intron | 35.0% | |
| ! | ATTTGCCCTTCTAAAGATGA+AGG | + | chr5_3:59599821-59599840 | Msa0821450:CDS | 35.0% |
| ! | TTCCTCCTTCATCTTTAGAA+GGG | - | chr5_3:59599829-59599848 | None:intergenic | 35.0% |
| ATTCCTCCTTCATCTTTAGA+AGG | - | chr5_3:59599830-59599849 | None:intergenic | 35.0% | |
| ! | CAAATGGTATGCTGTTGTTT+AGG | + | chr5_3:59599872-59599891 | Msa0821450:intron | 35.0% |
| TGACTTTGTCTGTTAGAGAA+GGG | + | chr5_3:59600001-59600020 | Msa0821450:intron | 35.0% | |
| CCGATATCATCTTAGAGTTT+GGG | - | chr5_3:59600426-59600445 | None:intergenic | 35.0% | |
| !! | CCCAAACTCTAAGATGATAT+CGG | + | chr5_3:59600423-59600442 | Msa0821450:intron | 35.0% |
| TCCGATATCATCTTAGAGTT+TGG | - | chr5_3:59600427-59600446 | None:intergenic | 35.0% | |
| CTCAAAACCTGGCATAAATT+GGG | - | chr5_3:59600499-59600518 | None:intergenic | 35.0% | |
| ! | TGGAAATTTTGCCTTGATTG+TGG | + | chr5_3:59600528-59600547 | Msa0821450:intron | 35.0% |
| ATTGCAATTTCCTCCCTAAA+TGG | - | chr5_3:59601303-59601322 | None:intergenic | 35.0% | |
| ATAACAGTCACAGAGAAACA+GGG | - | chr5_3:59600840-59600859 | None:intergenic | 35.0% | |
| TCTACAGTTTCGTAATCTAC+TGG | + | chr5_3:59600924-59600943 | Msa0821450:intron | 35.0% | |
| !!! | GTTTCGTAATCTACTGGTTT+TGG | + | chr5_3:59600930-59600949 | Msa0821450:intron | 35.0% |
| !! | ACAACCAAATTGAGTTGGTA+TGG | + | chr5_3:59600971-59600990 | Msa0821450:intron | 35.0% |
| !! | CAACCAAATTGAGTTGGTAT+GGG | + | chr5_3:59600972-59600991 | Msa0821450:intron | 35.0% |
| ATTGCAATTTCCTCCCTAAA+TGG | + | chr5_3:59601303-59601322 | Msa0821450:intron | 35.0% | |
| ! | AGCCAAATTTAAGATGCCTA+GGG | - | chr5_3:59601348-59601367 | None:intergenic | 35.0% |
| ! | AAGCCAAATTTAAGATGCCT+AGG | - | chr5_3:59601349-59601368 | None:intergenic | 35.0% |
| TTTAGATCTCTAGTCTGTGT+AGG | - | chr5_3:59601437-59601456 | None:intergenic | 35.0% | |
| !!! | GCTGTTGTGTTTTAGTTTAG+TGG | + | chr5_3:59601481-59601500 | Msa0821450:intron | 35.0% |
| !! | GCGTCTATTTCTTTTGTTTG+AGG | + | chr5_3:59601605-59601624 | Msa0821450:intron | 35.0% |
| !! | TAAGTTGGGGTTTTCTGTTT+AGG | + | chr5_3:59601651-59601670 | Msa0821450:intron | 35.0% |
| !! | TTTATCTGAGAGGTATTTCC+AGG | + | chr5_3:59602001-59602020 | Msa0821450:intron | 35.0% |
| ! | CAACTTAAAAAGCATATGCC+TGG | - | chr5_3:59602022-59602041 | None:intergenic | 35.0% |
| !!! | CAGGCATATGCTTTTTAAGT+TGG | + | chr5_3:59602020-59602039 | Msa0821450:intron | 35.0% |
| ATATCAAGATCCCAACTTCT+TGG | + | chr5_3:59602264-59602283 | Msa0821450:intron | 35.0% | |
| ATTGCTTATGTTTACGTCAG+TGG | + | chr5_3:59602632-59602651 | Msa0821450:intron | 35.0% | |
| ATGATTCTCTCATCATACAC+AGG | + | chr5_3:59602680-59602699 | Msa0821450:intron | 35.0% | |
| GGCTTCTAACTATTCAAACT+TGG | - | chr5_3:59602834-59602853 | None:intergenic | 35.0% | |
| CAACACTTTGTACTAAATCG+TGG | - | chr5_3:59603382-59603401 | None:intergenic | 35.0% | |
| !! | TACAAAGTGTTGTCTACTAG+TGG | + | chr5_3:59603390-59603409 | Msa0821450:intron | 35.0% |
| ACGGTTCCTATATATGTTTC+TGG | + | chr5_3:59603496-59603515 | Msa0821450:intron | 35.0% | |
| ACAAGCTGTTAATCCAAACA+AGG | - | chr5_3:59603655-59603674 | None:intergenic | 35.0% | |
| TTAATTCCAAACAGACCCTT+AGG | + | chr5_3:59603851-59603870 | Msa0821450:intron | 35.0% | |
| GTGGAAAATATGAGGGAAAA+TGG | + | chr5_3:59603920-59603939 | Msa0821450:intron | 35.0% | |
| !!! | TTTTTTAGTTCCCCCAAATG+AGG | + | chr5_3:59604084-59604103 | Msa0821450:intron | 35.0% |
| ATACTAAACCCTCCTCATTT+GGG | - | chr5_3:59604099-59604118 | None:intergenic | 35.0% | |
| AATACTAAACCCTCCTCATT+TGG | - | chr5_3:59604100-59604119 | None:intergenic | 35.0% | |
| AGAAATAGAGGAAAATGGGA+GGG | - | chr5_3:59604153-59604172 | None:intergenic | 35.0% | |
| AAGAAATAGAGGAAAATGGG+AGG | - | chr5_3:59604154-59604173 | None:intergenic | 35.0% | |
| TGAGCAAGTGAAAGAAATAG+AGG | - | chr5_3:59604165-59604184 | None:intergenic | 35.0% | |
| GTAGATTCAAGTAGTTAGAG+AGG | + | chr5_3:59604243-59604262 | Msa0821450:intron | 35.0% | |
| ! | CTAGTCAATTAAGAAAGCGT+TGG | + | chr5_3:59604316-59604335 | Msa0821450:intron | 35.0% |
| ATTCAGTATGTAGGAACTGA+CGG | - | chr5_3:59604562-59604581 | None:intergenic | 35.0% | |
| CAAAACCTTGATCTCATGTA+AGG | - | chr5_3:59604629-59604648 | None:intergenic | 35.0% | |
| GGTTCACGAATAATACCAAA+AGG | + | chr5_3:59604717-59604736 | Msa0821450:three_prime_UTR | 35.0% | |
| GAAACCAAAAACACCTTGTA+GGG | - | chr5_3:59604873-59604892 | None:intergenic | 35.0% | |
| AAAGTAACAGTTAGATGCAG+AGG | - | chr5_3:59604895-59604914 | None:intergenic | 35.0% | |
| ACGCAGACATAAACAATTGT+AGG | - | chr5_3:59604937-59604956 | None:intergenic | 35.0% | |
| TACAATTGTTTATGTCTGCG+TGG | + | chr5_3:59604936-59604955 | Msa0821450:three_prime_UTR | 35.0% | |
| !! | AGAGGGTAATGGAATTGAAA+AGG | - | chr5_3:59604964-59604983 | None:intergenic | 35.0% |
| AGAAATTCCATGGAAAGTAG+AGG | + | chr5_3:59605068-59605087 | Msa0821450:three_prime_UTR | 35.0% | |
| TTGCTTCTTCTGCTTTGCTT+TGG | - | chr5_3:59598888-59598907 | None:intergenic | 40.0% | |
| ! | GTGGAAAGTGAAGAGAGTTT+TGG | - | chr5_3:59598949-59598968 | None:intergenic | 40.0% |
| GAAGGTGAGTGAAAATGGAA+GGG | - | chr5_3:59599045-59599064 | None:intergenic | 40.0% | |
| AGAAGGTGAGTGAAAATGGA+AGG | - | chr5_3:59599046-59599065 | None:intergenic | 40.0% | |
| GAGAAGAAGGTGAGTGAAAA+TGG | - | chr5_3:59599050-59599069 | None:intergenic | 40.0% | |
| GTTGAAGTAAAGGGTGAAAG+AGG | - | chr5_3:59599075-59599094 | None:intergenic | 40.0% | |
| GAATGTGTACCTGATGCTTT+AGG | - | chr5_3:59599105-59599124 | None:intergenic | 40.0% | |
| ACTATTGGTGCAGCATTTGT+TGG | + | chr5_3:59599294-59599313 | Msa0821450:CDS | 40.0% | |
| CGCTGCAGGTTAAAAATAGT+TGG | + | chr5_3:59599363-59599382 | Msa0821450:intron | 40.0% | |
| TGTTGGAAACTGACATCTCT+TGG | + | chr5_3:59599656-59599675 | Msa0821450:intron | 40.0% | |
| GTCTCAGTGCTAGATATTTC+TGG | + | chr5_3:59599704-59599723 | Msa0821450:intron | 40.0% | |
| TGAACACACAACACACAACA+AGG | - | chr5_3:59599765-59599784 | None:intergenic | 40.0% | |
| TTGTTGTGTGTTGTGTGTTC+AGG | + | chr5_3:59599764-59599783 | Msa0821450:intron | 40.0% | |
| AGATTTGAGTGATCTTGCTG+TGG | + | chr5_3:59599790-59599809 | Msa0821450:CDS | 40.0% | |
| AAAGATGAAGGAGGAATGCT+TGG | + | chr5_3:59599833-59599852 | Msa0821450:CDS | 40.0% | |
| AAGATGAAGGAGGAATGCTT+GGG | + | chr5_3:59599834-59599853 | Msa0821450:CDS | 40.0% | |
| !!! | TTGCAGTTGGCTACTTTTTG+TGG | + | chr5_3:59599939-59599958 | Msa0821450:intron | 40.0% |
| CTGACTTTGTCTGTTAGAGA+AGG | + | chr5_3:59600000-59600019 | Msa0821450:intron | 40.0% | |
| TGTATGAAGTTTCTGTGGGT+AGG | + | chr5_3:59600032-59600051 | Msa0821450:intron | 40.0% | |
| GGTGAAAACTTGAGGTTCAA+AGG | + | chr5_3:59600053-59600072 | Msa0821450:intron | 40.0% | |
| ATTCCCTTCACAGAATCACA+TGG | - | chr5_3:59600130-59600149 | None:intergenic | 40.0% | |
| TCTGTGAAGGGAATCAGATA+AGG | + | chr5_3:59600136-59600155 | Msa0821450:intron | 40.0% | |
| AAACCCAAATGCCGCAATTA+AGG | - | chr5_3:59600250-59600269 | None:intergenic | 40.0% | |
| !! | CAACACAATGAAAGTGTTGG+AGG | - | chr5_3:59600286-59600305 | None:intergenic | 40.0% |
| CTCCAACACTTTCATTGTGT+TGG | + | chr5_3:59600284-59600303 | Msa0821450:intron | 40.0% | |
| ! | GTCCAACACAATGAAAGTGT+TGG | - | chr5_3:59600289-59600308 | None:intergenic | 40.0% |
| TTCATTGTGTTGGACTTGAG+AGG | + | chr5_3:59600294-59600313 | Msa0821450:intron | 40.0% | |
| GCTTACAAGCACTACTACTT+AGG | - | chr5_3:59600351-59600370 | None:intergenic | 40.0% | |
| AGTAGTAGTGCTTGTAAGCT+TGG | + | chr5_3:59600352-59600371 | Msa0821450:intron | 40.0% | |
| !! | AGCTGACAAACCGATTTTGT+AGG | + | chr5_3:59600384-59600403 | Msa0821450:intron | 40.0% |
| !! | GCTGACAAACCGATTTTGTA+GGG | + | chr5_3:59600385-59600404 | Msa0821450:intron | 40.0% |
| GTCTATCCTAGATCTGTTGT+TGG | + | chr5_3:59600447-59600466 | Msa0821450:intron | 40.0% | |
| CCTCAAAACCTGGCATAAAT+TGG | - | chr5_3:59600500-59600519 | None:intergenic | 40.0% | |
| ! | CCAATTTATGCCAGGTTTTG+AGG | + | chr5_3:59600497-59600516 | Msa0821450:intron | 40.0% |
| ATGGTGAAAGGTTGAAGATG+AGG | - | chr5_3:59600733-59600752 | None:intergenic | 40.0% | |
| CATCTTCAACCTTTCACCAT+CGG | + | chr5_3:59600733-59600752 | Msa0821450:intron | 40.0% | |
| TTCGGGAATGATAAAGCAAG+TGG | - | chr5_3:59600811-59600830 | None:intergenic | 40.0% | |
| !! | AGAGAAACAGGGAAAGTGTT+CGG | - | chr5_3:59600829-59600848 | None:intergenic | 40.0% |
| CATAACAGTCACAGAGAAAC+AGG | - | chr5_3:59600841-59600860 | None:intergenic | 40.0% | |
| CAACCCATACCAACTCAATT+TGG | - | chr5_3:59600978-59600997 | None:intergenic | 40.0% | |
| ! | TATGGGTTGAACATGAGATG+AGG | + | chr5_3:59600989-59601008 | Msa0821450:intron | 40.0% |
| !!! | CATTTTTGGCAACACCACTA+AGG | + | chr5_3:59601095-59601114 | Msa0821450:intron | 40.0% |
| TGAACTCCAAATGAGAGAGA+AGG | + | chr5_3:59601174-59601193 | Msa0821450:intron | 40.0% | |
| CTACTTCCTTCTCTCTCATT+TGG | - | chr5_3:59601183-59601202 | None:intergenic | 40.0% | |
| CAAATGAGAGAGAAGGAAGT+AGG | + | chr5_3:59601181-59601200 | Msa0821450:intron | 40.0% | |
| AATTTCCTCCCTAAATGGAG+AGG | + | chr5_3:59601308-59601327 | Msa0821450:intron | 40.0% | |
| ! | GCCAAATTTAAGATGCCTAG+GGG | - | chr5_3:59601347-59601366 | None:intergenic | 40.0% |
| AGAGATCTAAATAGCCGTGA+AGG | + | chr5_3:59601446-59601465 | Msa0821450:intron | 40.0% | |
| GAGATCTAAATAGCCGTGAA+GGG | + | chr5_3:59601447-59601466 | Msa0821450:intron | 40.0% | |
| AAACACAACAGCACACAAAG+AGG | - | chr5_3:59601473-59601492 | None:intergenic | 40.0% | |
| TGCTTTCGTCTAATAGGAAG+TGG | + | chr5_3:59601520-59601539 | Msa0821450:intron | 40.0% | |
| !! | ATAGGAAGTGGATTGTTCTG+TGG | + | chr5_3:59601532-59601551 | Msa0821450:intron | 40.0% |
| TCCTAAACACAAGACGTATC+CGG | - | chr5_3:59601729-59601748 | None:intergenic | 40.0% | |
| !! | TGCTGCAAGTTTTATCTGAG+AGG | + | chr5_3:59601991-59602010 | Msa0821450:CDS | 40.0% |
| ! | ATGAGGTGATGTTGGCTAAT+TGG | - | chr5_3:59602123-59602142 | None:intergenic | 40.0% |
| AATTAGCCAACATCACCTCA+TGG | + | chr5_3:59602122-59602141 | Msa0821450:intron | 40.0% | |
| ATTAGCCAACATCACCTCAT+GGG | + | chr5_3:59602123-59602142 | Msa0821450:intron | 40.0% | |
| GGTTGAATGTCTTGAAGTAC+TGG | - | chr5_3:59602226-59602245 | None:intergenic | 40.0% | |
| TATTTCACATGCAGCTCATC+AGG | - | chr5_3:59602247-59602266 | None:intergenic | 40.0% | |
| ! | ATAGGAGCATACACTTCTTC+AGG | - | chr5_3:59602319-59602338 | None:intergenic | 40.0% |
| CTCAGCAAGCTAAGTACTAA+CGG | - | chr5_3:59602419-59602438 | None:intergenic | 40.0% | |
| TCTGGTAAGCACAACTTTAG+CGG | + | chr5_3:59602807-59602826 | Msa0821450:intron | 40.0% | |
| ATGACACTGCATTCAGAAGT+CGG | - | chr5_3:59602971-59602990 | None:intergenic | 40.0% | |
| TTCTGAATGCAGTGTCATCA+TGG | + | chr5_3:59602973-59602992 | Msa0821450:intron | 40.0% | |
| TGAAGCAACAATTGTCTGCA+TGG | - | chr5_3:59603138-59603157 | None:intergenic | 40.0% | |
| TAAGACGTCCTGAACAAAGA+CGG | + | chr5_3:59603477-59603496 | Msa0821450:intron | 40.0% | |
| TATAGGAACCGTCTTTGTTC+AGG | - | chr5_3:59603488-59603507 | None:intergenic | 40.0% | |
| TGTAACTAACTAAGGGGGTT+AGG | - | chr5_3:59603619-59603638 | None:intergenic | 40.0% | |
| !! | ATTAGACAGTTGGCCTTGTT+TGG | + | chr5_3:59603639-59603658 | Msa0821450:intron | 40.0% |
| ! | AGTGACTTGTGAGACTGTTT+CGG | - | chr5_3:59603800-59603819 | None:intergenic | 40.0% |
| TCACAAGTCACTAGTGCTTA+TGG | + | chr5_3:59603808-59603827 | Msa0821450:intron | 40.0% | |
| AACTCCCAAACAAAGCCTAA+GGG | - | chr5_3:59603869-59603888 | None:intergenic | 40.0% | |
| AAACTCCCAAACAAAGCCTA+AGG | - | chr5_3:59603870-59603889 | None:intergenic | 40.0% | |
| !! | TTAGGCTTTGTTTGGGAGTT+TGG | + | chr5_3:59603869-59603888 | Msa0821450:intron | 40.0% |
| TTTGAGGGGTGGAAAATATG+AGG | + | chr5_3:59603912-59603931 | Msa0821450:intron | 40.0% | |
| TTGAGGGGTGGAAAATATGA+GGG | + | chr5_3:59603913-59603932 | Msa0821450:intron | 40.0% | |
| TACTAAACCCTCCTCATTTG+GGG | - | chr5_3:59604098-59604117 | None:intergenic | 40.0% | |
| GAAATAGAGGAAAATGGGAG+GGG | - | chr5_3:59604152-59604171 | None:intergenic | 40.0% | |
| ATAATAGGATGGATGTGAGG+AGG | + | chr5_3:59604289-59604308 | Msa0821450:intron | 40.0% | |
| !! | TAAGAAAGCGTTGGATCCTT+TGG | + | chr5_3:59604325-59604344 | Msa0821450:intron | 40.0% |
| !! | AAGAAAGCGTTGGATCCTTT+GGG | + | chr5_3:59604326-59604345 | Msa0821450:intron | 40.0% |
| !! | TGTGTTGGTGTCAATGTTTC+AGG | + | chr5_3:59604477-59604496 | Msa0821450:intron | 40.0% |
| !! | GTGTTGGTGTCAATGTTTCA+GGG | + | chr5_3:59604478-59604497 | Msa0821450:intron | 40.0% |
| !! | TGTTGGTGTCAATGTTTCAG+GGG | + | chr5_3:59604479-59604498 | Msa0821450:intron | 40.0% |
| AGGAAAAATGCTCACATGCA+AGG | - | chr5_3:59604609-59604628 | None:intergenic | 40.0% | |
| TTGTAGCAGTTCACACTCTT+TGG | + | chr5_3:59604669-59604688 | Msa0821450:three_prime_UTR | 40.0% | |
| TTACATATCAGGTCCCTACA+AGG | + | chr5_3:59604857-59604876 | Msa0821450:three_prime_UTR | 40.0% | |
| GGAAACCAAAAACACCTTGT+AGG | - | chr5_3:59604874-59604893 | None:intergenic | 40.0% | |
| AGAGCTTGTCAATTTCGCGT+TGG | + | chr5_3:59598913-59598932 | Msa0821450:CDS | 45.0% | |
| GGTGAAAGAGGAAGAGAAGA+AGG | - | chr5_3:59599063-59599082 | None:intergenic | 45.0% | |
| ! | GGAGGCATGGTTGAAGTAAA+GGG | - | chr5_3:59599084-59599103 | None:intergenic | 45.0% |
| ! | AGGAGGCATGGTTGAAGTAA+AGG | - | chr5_3:59599085-59599104 | None:intergenic | 45.0% |
| ! | TGTGTACCTGATGCTTTAGG+AGG | - | chr5_3:59599102-59599121 | None:intergenic | 45.0% |
| TGTCCGTGCTTCATGGTATA+TGG | - | chr5_3:59599482-59599501 | None:intergenic | 45.0% | |
| ! | CATATGTGTCGTTGTCGTGT+CGG | + | chr5_3:59599573-59599592 | Msa0821450:intron | 45.0% |
| ! | TTCGCGAATCGTGATAGTGT+TGG | + | chr5_3:59599639-59599658 | Msa0821450:intron | 45.0% |
| ! | TGCCCTTCTAAAGATGAAGG+AGG | + | chr5_3:59599824-59599843 | Msa0821450:CDS | 45.0% |
| TGTGGGTAGGTGAAAACTTG+AGG | + | chr5_3:59600045-59600064 | Msa0821450:intron | 45.0% | |
| TGTGCCATGTGATTCTGTGA+AGG | + | chr5_3:59600123-59600142 | Msa0821450:intron | 45.0% | |
| GTGCCATGTGATTCTGTGAA+GGG | + | chr5_3:59600124-59600143 | Msa0821450:intron | 45.0% | |
| TTGTGTTGGACTTGAGAGGT+TGG | + | chr5_3:59600298-59600317 | Msa0821450:intron | 45.0% | |
| TGTGTTGGACTTGAGAGGTT+GGG | + | chr5_3:59600299-59600318 | Msa0821450:intron | 45.0% | |
| CTACTACTTAGGCCATGTCT+AGG | - | chr5_3:59600340-59600359 | None:intergenic | 45.0% | |
| ACCTGGCATAAATTGGGCTA+GGG | - | chr5_3:59600493-59600512 | None:intergenic | 45.0% | |
| AACCTGGCATAAATTGGGCT+AGG | - | chr5_3:59600494-59600513 | None:intergenic | 45.0% | |
| !!! | TTTATGCCAGGTTTTGAGGC+AGG | + | chr5_3:59600501-59600520 | Msa0821450:intron | 45.0% |
| !!! | TTATGCCAGGTTTTGAGGCA+GGG | + | chr5_3:59600502-59600521 | Msa0821450:intron | 45.0% |
| AGTGCAGATGCTCTCCATTT+AGG | + | chr5_3:59600562-59600581 | Msa0821450:intron | 45.0% | |
| GTGCAGATGCTCTCCATTTA+GGG | + | chr5_3:59600563-59600582 | Msa0821450:intron | 45.0% | |
| !! | GAGAAACAGGGAAAGTGTTC+GGG | - | chr5_3:59600828-59600847 | None:intergenic | 45.0% |
| ! | TTTTGGCAACACCACTAAGG+CGG | + | chr5_3:59601098-59601117 | Msa0821450:intron | 45.0% |
| TATGACGAAGATACGAGGTG+TGG | + | chr5_3:59601124-59601143 | Msa0821450:intron | 45.0% | |
| ATGAGAGAGAAGGAAGTAGG+TGG | + | chr5_3:59601184-59601203 | Msa0821450:intron | 45.0% | |
| GTGCAGATCCTCTCCATTTA+GGG | - | chr5_3:59601319-59601338 | None:intergenic | 45.0% | |
| AGTGCAGATCCTCTCCATTT+AGG | - | chr5_3:59601320-59601339 | None:intergenic | 45.0% | |
| ! | AATTTAAGATGCCTAGGGGC+AGG | - | chr5_3:59601343-59601362 | None:intergenic | 45.0% |
| GCCCCTAGGCATCTTAAATT+TGG | + | chr5_3:59601343-59601362 | Msa0821450:intron | 45.0% | |
| TTCGAGCACCTTAATTGTGC+TGG | + | chr5_3:59601390-59601409 | Msa0821450:intron | 45.0% | |
| TCGAGCACCTTAATTGTGCT+GGG | + | chr5_3:59601391-59601410 | Msa0821450:intron | 45.0% | |
| TCTCACACCCAGCACAATTA+AGG | - | chr5_3:59601401-59601420 | None:intergenic | 45.0% | |
| TTAATTGTGCTGGGTGTGAG+AGG | + | chr5_3:59601400-59601419 | Msa0821450:intron | 45.0% | |
| ! | ATTGTTTGGTGAGCCTAGCT+TGG | + | chr5_3:59601565-59601584 | Msa0821450:intron | 45.0% |
| TCCTAACACACAACCAAGCT+AGG | - | chr5_3:59601581-59601600 | None:intergenic | 45.0% | |
| ATGTTACCTGTGCTCTGCAT+AGG | + | chr5_3:59601678-59601697 | Msa0821450:intron | 45.0% | |
| ! | GGTTGTAACCTTTTTCCCAC+CGG | + | chr5_3:59601707-59601726 | Msa0821450:intron | 45.0% |
| AAACACAAGACGTATCCGGT+GGG | - | chr5_3:59601725-59601744 | None:intergenic | 45.0% | |
| TAAACACAAGACGTATCCGG+TGG | - | chr5_3:59601726-59601745 | None:intergenic | 45.0% | |
| ACCGGATACGTCTTGTGTTT+AGG | + | chr5_3:59601725-59601744 | Msa0821450:intron | 45.0% | |
| GCAACAGGTTCCTGAATTTG+AGG | + | chr5_3:59601905-59601924 | Msa0821450:intron | 45.0% | |
| ACAGGTTCCTGAATTTGAGG+AGG | + | chr5_3:59601908-59601927 | Msa0821450:intron | 45.0% | |
| CAGCAAGTGCCATCCAAATT+GGG | - | chr5_3:59601976-59601995 | None:intergenic | 45.0% | |
| CTTATCCCATGAGGTGATGT+TGG | - | chr5_3:59602131-59602150 | None:intergenic | 45.0% | |
| CAACATCACCTCATGGGATA+AGG | + | chr5_3:59602129-59602148 | Msa0821450:intron | 45.0% | |
| !! | TTGAAGTACTGGTTCTTCCC+TGG | - | chr5_3:59602215-59602234 | None:intergenic | 45.0% |
| TCAAGATCCCAACTTCTTGG+AGG | + | chr5_3:59602267-59602286 | Msa0821450:intron | 45.0% | |
| ! | TTTACGTCAGTGGCTGATTC+TGG | + | chr5_3:59602642-59602661 | Msa0821450:intron | 45.0% |
| CGTAAATCCTGGCAAAGATG+CGG | - | chr5_3:59602710-59602729 | None:intergenic | 45.0% | |
| CGCATCTTTGCCAGGATTTA+CGG | + | chr5_3:59602708-59602727 | Msa0821450:CDS | 45.0% | |
| GTTCTTCCCCTTCGACAATT+TGG | + | chr5_3:59602730-59602749 | Msa0821450:CDS | 45.0% | |
| CAGGTTCCAAATTGTCGAAG+GGG | - | chr5_3:59602739-59602758 | None:intergenic | 45.0% | |
| CCAGGTTCCAAATTGTCGAA+GGG | - | chr5_3:59602740-59602759 | None:intergenic | 45.0% | |
| ! | CCTTCGACAATTTGGAACCT+GGG | + | chr5_3:59602738-59602757 | Msa0821450:CDS | 45.0% |
| ! | CTTCGACAATTTGGAACCTG+GGG | + | chr5_3:59602739-59602758 | Msa0821450:CDS | 45.0% |
| ! | CGAATTTATTTCAGGTCCCC+AGG | - | chr5_3:59602758-59602777 | None:intergenic | 45.0% |
| TGACACTGCATTCAGAAGTC+GGG | - | chr5_3:59602970-59602989 | None:intergenic | 45.0% | |
| GCGCTATAGTACTAGCATAG+TGG | + | chr5_3:59603333-59603352 | Msa0821450:intron | 45.0% | |
| ! | GTGTTGAGTGTTGTCAATCG+CGG | - | chr5_3:59603429-59603448 | None:intergenic | 45.0% |
| ! | GTGACTTGTGAGACTGTTTC+GGG | - | chr5_3:59603799-59603818 | None:intergenic | 45.0% |
| ACAAAGCCTAAGGGTCTGTT+TGG | - | chr5_3:59603860-59603879 | None:intergenic | 45.0% | |
| !! | ACAGACCCTTAGGCTTTGTT+TGG | + | chr5_3:59603861-59603880 | Msa0821450:intron | 45.0% |
| !! | CAGACCCTTAGGCTTTGTTT+GGG | + | chr5_3:59603862-59603881 | Msa0821450:intron | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr5_3:59603873-59603892 | Msa0821450:intron | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr5_3:59603874-59603893 | Msa0821450:intron | 45.0% |
| ! | TTTAGTTCCCCCAAATGAGG+AGG | + | chr5_3:59604087-59604106 | Msa0821450:intron | 45.0% |
| TTAGTTCCCCCAAATGAGGA+GGG | + | chr5_3:59604088-59604107 | Msa0821450:intron | 45.0% | |
| ACTAAACCCTCCTCATTTGG+GGG | - | chr5_3:59604097-59604116 | None:intergenic | 45.0% | |
| AGGGAAAGGCTTGGGAAAAA+AGG | - | chr5_3:59604190-59604209 | None:intergenic | 45.0% | |
| !! | TAAGGCTTTGTTTGCGAGTG+TGG | - | chr5_3:59604223-59604242 | None:intergenic | 45.0% |
| TGTCAATGTTTCAGGGGTTC+AGG | + | chr5_3:59604485-59604504 | Msa0821450:intron | 45.0% | |
| AATTCATGCCTATGCGGTGA+AGG | + | chr5_3:59604531-59604550 | Msa0821450:CDS | 45.0% | |
| AAATGCTCACATGCAAGGAG+AGG | - | chr5_3:59604604-59604623 | None:intergenic | 45.0% | |
| ! | TGAGATCAAGGTTTTGCGAG+AGG | + | chr5_3:59604633-59604652 | Msa0821450:three_prime_UTR | 45.0% |
| ! | GAGATCAAGGTTTTGCGAGA+GGG | + | chr5_3:59604634-59604653 | Msa0821450:three_prime_UTR | 45.0% |
| ! | TTCAACTTTTACGGCTTGCG+AGG | + | chr5_3:59604696-59604715 | Msa0821450:three_prime_UTR | 45.0% |
| !! | AGGTCCCTACAAGGTGTTTT+TGG | + | chr5_3:59604866-59604885 | Msa0821450:three_prime_UTR | 45.0% |
| GAAAACCACACAGACAGAGA+GGG | - | chr5_3:59605006-59605025 | None:intergenic | 45.0% | |
| !!! | TTATTTTTCATTTTTTTTAT+TGG | + | chr5_3:59599142-59599161 | Msa0821450:intron | 5.0% |
| !!! | AAAATTAATTTTATTATTGT+TGG | + | chr5_3:59600195-59600214 | Msa0821450:intron | 5.0% |
| ! | ACCATGCCTCCTAAAGCATC+AGG | + | chr5_3:59599093-59599112 | Msa0821450:CDS | 50.0% |
| !! | ACCTGATGCTTTAGGAGGCA+TGG | - | chr5_3:59599097-59599116 | None:intergenic | 50.0% |
| ! | ACTGGAGGTAGTGCTGTTGA+AGG | + | chr5_3:59599256-59599275 | Msa0821450:CDS | 50.0% |
| ! | TAGTGCTGTTGAAGGTGGAG+CGG | + | chr5_3:59599264-59599283 | Msa0821450:CDS | 50.0% |
| TGTTGAAGGTGGAGCGGAAA+GGG | + | chr5_3:59599270-59599289 | Msa0821450:CDS | 50.0% | |
| TGGAGCGGAAAGGGAACTAT+TGG | + | chr5_3:59599279-59599298 | Msa0821450:CDS | 50.0% | |
| ATACCATGAAGCACGGACAC+TGG | + | chr5_3:59599483-59599502 | Msa0821450:intron | 50.0% | |
| GACACTCCTCGAATTAGCCA+CGG | - | chr5_3:59599602-59599621 | None:intergenic | 50.0% | |
| ATGAAGGAGGAATGCTTGGG+TGG | + | chr5_3:59599837-59599856 | Msa0821450:CDS | 50.0% | |
| TGAAGGAGGAATGCTTGGGT+GGG | + | chr5_3:59599838-59599857 | Msa0821450:CDS | 50.0% | |
| AATGCTTGGGTGGGTGAGAA+AGG | + | chr5_3:59599847-59599866 | Msa0821450:CDS | 50.0% | |
| ATGCTTGGGTGGGTGAGAAA+GGG | + | chr5_3:59599848-59599867 | Msa0821450:CDS | 50.0% | |
| GTGGGTGAGAAAGGGACAAA+TGG | + | chr5_3:59599856-59599875 | Msa0821450:CDS | 50.0% | |
| CTAGAGGCGGACCACAATTA+AGG | - | chr5_3:59600224-59600243 | None:intergenic | 50.0% | |
| CCCAAATGCCGCAATTAAGG+CGG | - | chr5_3:59600247-59600266 | None:intergenic | 50.0% | |
| CCGCCTTAATTGCGGCATTT+GGG | + | chr5_3:59600244-59600263 | Msa0821450:intron | 50.0% | |
| ! | AGTGTTGGAGGCTGCAATGA+GGG | - | chr5_3:59600274-59600293 | None:intergenic | 50.0% |
| !! | AAGTGTTGGAGGCTGCAATG+AGG | - | chr5_3:59600275-59600294 | None:intergenic | 50.0% |
| AGTCCCACATGACCTAGACA+TGG | + | chr5_3:59600325-59600344 | Msa0821450:intron | 50.0% | |
| AGGCCATGTCTAGGTCATGT+GGG | - | chr5_3:59600331-59600350 | None:intergenic | 50.0% | |
| TAGGCCATGTCTAGGTCATG+TGG | - | chr5_3:59600332-59600351 | None:intergenic | 50.0% | |
| GGCAGTCCAACAACAGATCT+AGG | - | chr5_3:59600456-59600475 | None:intergenic | 50.0% | |
| ! | CCTGGCATAAATTGGGCTAG+GGG | - | chr5_3:59600492-59600511 | None:intergenic | 50.0% |
| !! | TGGAGAGCATCTGCACTCTA+GGG | - | chr5_3:59600559-59600578 | None:intergenic | 50.0% |
| !! | ATGGAGAGCATCTGCACTCT+AGG | - | chr5_3:59600560-59600579 | None:intergenic | 50.0% |
| CAGATGCTCTCCATTTAGGG+AGG | + | chr5_3:59600566-59600585 | Msa0821450:intron | 50.0% | |
| ACGAAGATACGAGGTGTGGT+CGG | + | chr5_3:59601128-59601147 | Msa0821450:intron | 50.0% | |
| GCGACGATAGTGAGTTCTCA+AGG | + | chr5_3:59601150-59601169 | Msa0821450:intron | 50.0% | |
| CAGATCCTCTCCATTTAGGG+AGG | - | chr5_3:59601316-59601335 | None:intergenic | 50.0% | |
| GATTGTTCTGTGGCTTCCTG+TGG | + | chr5_3:59601542-59601561 | Msa0821450:intron | 50.0% | |
| ! | GTGGCTTCCTGTGGATTGTT+TGG | + | chr5_3:59601551-59601570 | Msa0821450:intron | 50.0% |
| AGGCTCACCAAACAATCCAC+AGG | - | chr5_3:59601561-59601580 | None:intergenic | 50.0% | |
| GCCTAGCTTGGTTGTGTGTT+AGG | + | chr5_3:59601577-59601596 | Msa0821450:intron | 50.0% | |
| AGACGTATCCGGTGGGAAAA+AGG | - | chr5_3:59601718-59601737 | None:intergenic | 50.0% | |
| AACGCAGCCTCCTCAAATTC+AGG | - | chr5_3:59601918-59601937 | None:intergenic | 50.0% | |
| GTACGGTGCAAGACCCAATT+TGG | + | chr5_3:59601960-59601979 | Msa0821450:CDS | 50.0% | |
| GGTGCAAGACCCAATTTGGA+TGG | + | chr5_3:59601964-59601983 | Msa0821450:CDS | 50.0% | |
| GCAGCAAGTGCCATCCAAAT+TGG | - | chr5_3:59601977-59601996 | None:intergenic | 50.0% | |
| ! | TAATCGGGCCTTATCCCATG+AGG | - | chr5_3:59602140-59602159 | None:intergenic | 50.0% |
| AGATCCCAACTTCTTGGAGG+AGG | + | chr5_3:59602270-59602289 | Msa0821450:intron | 50.0% | |
| TGTGCCTCCTCCAAGAAGTT+GGG | - | chr5_3:59602277-59602296 | None:intergenic | 50.0% | |
| AAATCCTGGCAAAGATGCGG+TGG | - | chr5_3:59602707-59602726 | None:intergenic | 50.0% | |
| AGGGGAAGAACCGTAAATCC+TGG | - | chr5_3:59602721-59602740 | None:intergenic | 50.0% | |
| ! | CCCTTCGACAATTTGGAACC+TGG | + | chr5_3:59602737-59602756 | Msa0821450:CDS | 50.0% |
| CCCAGGTTCCAAATTGTCGA+AGG | - | chr5_3:59602741-59602760 | None:intergenic | 50.0% | |
| TGCAGTGTCATCATGGAGTG+CGG | + | chr5_3:59602980-59602999 | Msa0821450:intron | 50.0% | |
| GAGACTGTTTCGGGAGCTTA+GGG | - | chr5_3:59603790-59603809 | None:intergenic | 50.0% | |
| TGAGACTGTTTCGGGAGCTT+AGG | - | chr5_3:59603791-59603810 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr5_3:59603872-59603891 | Msa0821450:intron | 50.0% |
| TAGAGGAAAATGGGAGGGGA+GGG | - | chr5_3:59604148-59604167 | None:intergenic | 50.0% | |
| ATAGAGGAAAATGGGAGGGG+AGG | - | chr5_3:59604149-59604168 | None:intergenic | 50.0% | |
| ! | CTTTGTTTGCGAGTGTGGAG+GGG | - | chr5_3:59604218-59604237 | None:intergenic | 50.0% |
| !! | GCTTTGTTTGCGAGTGTGGA+GGG | - | chr5_3:59604219-59604238 | None:intergenic | 50.0% |
| CGTTGGATCCTTTGGGCATT+GGG | + | chr5_3:59604333-59604352 | Msa0821450:intron | 50.0% | |
| CGCATAGGCATGAATTCCTC+CGG | - | chr5_3:59604527-59604546 | None:intergenic | 50.0% | |
| CGGAGGAATTCATGCCTATG+CGG | + | chr5_3:59604525-59604544 | Msa0821450:CDS | 50.0% | |
| CACATGCAAGGAGAGGAAAG+TGG | - | chr5_3:59604597-59604616 | None:intergenic | 50.0% | |
| GGAAAACCACACAGACAGAG+AGG | - | chr5_3:59605007-59605026 | None:intergenic | 50.0% | |
| ! | GGAGGTAGTGCTGTTGAAGG+TGG | + | chr5_3:59599259-59599278 | Msa0821450:CDS | 55.0% |
| CTGTTGAAGGTGGAGCGGAA+AGG | + | chr5_3:59599269-59599288 | Msa0821450:CDS | 55.0% | |
| CTTCAACAGAGAGTCGCTGC+AGG | + | chr5_3:59599349-59599368 | Msa0821450:CDS | 55.0% | |
| TGTCCAGTGTCCGTGCTTCA+TGG | - | chr5_3:59599489-59599508 | None:intergenic | 55.0% | |
| GCAATTAAGGCGGCTAGAGG+CGG | - | chr5_3:59600237-59600256 | None:intergenic | 55.0% | |
| GCCTCTAGCCGCCTTAATTG+CGG | + | chr5_3:59600236-59600255 | Msa0821450:intron | 55.0% | |
| GCCGCCTTAATTGCGGCATT+TGG | + | chr5_3:59600243-59600262 | Msa0821450:intron | 55.0% | |
| ! | CATAAATTGGGCTAGGGGCG+TGG | - | chr5_3:59600487-59600506 | None:intergenic | 55.0% |
| CCCCTAGCCCAATTTATGCC+AGG | + | chr5_3:59600489-59600508 | Msa0821450:intron | 55.0% | |
| CAACACCCTGCCTCAAAACC+TGG | - | chr5_3:59600510-59600529 | None:intergenic | 55.0% | |
| !!! | CAGGTTTTGAGGCAGGGTGT+TGG | + | chr5_3:59600508-59600527 | Msa0821450:intron | 55.0% |
| CTAGGGGCAGACCACAATCA+AGG | - | chr5_3:59600542-59600561 | None:intergenic | 55.0% | |
| !! | GGAGAGCATCTGCACTCTAG+GGG | - | chr5_3:59600558-59600577 | None:intergenic | 55.0% |
| GGCACAATGCCGATGGTGAA+AGG | - | chr5_3:59600745-59600764 | None:intergenic | 55.0% | |
| ATCGGCATTGTGCCCTTCAC+CGG | + | chr5_3:59600751-59600770 | Msa0821450:intron | 55.0% | |
| CAGTAGTCAACGGAAACCGC+CGG | - | chr5_3:59600773-59600792 | None:intergenic | 55.0% | |
| GGCGGTATGACGAAGATACG+AGG | + | chr5_3:59601119-59601138 | Msa0821450:intron | 55.0% | |
| GGTGCTCGAAGCTGCAATGA+AGG | - | chr5_3:59601380-59601399 | None:intergenic | 55.0% | |
| GCACACAAAGAGGCCCTTCA+CGG | - | chr5_3:59601463-59601482 | None:intergenic | 55.0% | |
| ACGCTACCTATGCAGAGCAC+AGG | - | chr5_3:59601687-59601706 | None:intergenic | 55.0% | |
| TGTGCTCTGCATAGGTAGCG+TGG | + | chr5_3:59601686-59601705 | Msa0821450:intron | 55.0% | |
| CTGTGCCTCCTCCAAGAAGT+TGG | - | chr5_3:59602278-59602297 | None:intergenic | 55.0% | |
| TCATGGAGTGCGGTCGTTAC+AGG | + | chr5_3:59602990-59603009 | Msa0821450:CDS | 55.0% | |
| TACCTGTGACTGCAACCACC+TGG | - | chr5_3:59603019-59603038 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr5_3:59603877-59603896 | Msa0821450:intron | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr5_3:59603878-59603897 | Msa0821450:intron | 55.0% | |
| TTTGGGAGTTTGGAGGGGAG+GGG | + | chr5_3:59603879-59603898 | Msa0821450:intron | 55.0% | |
| AGGGGAAGGGAGGACTTTGA+GGG | + | chr5_3:59603897-59603916 | Msa0821450:intron | 55.0% | |
| AAATGGGAGGGGAGGGCTTT+GGG | - | chr5_3:59604141-59604160 | None:intergenic | 55.0% | |
| AAAATGGGAGGGGAGGGCTT+TGG | - | chr5_3:59604142-59604161 | None:intergenic | 55.0% | |
| TTTGCGAGTGTGGAGGGGAA+GGG | - | chr5_3:59604213-59604232 | None:intergenic | 55.0% | |
| !! | GGCTTTGTTTGCGAGTGTGG+AGG | - | chr5_3:59604220-59604239 | None:intergenic | 55.0% |
| GCGTTGGATCCTTTGGGCAT+TGG | + | chr5_3:59604332-59604351 | Msa0821450:intron | 55.0% | |
| !! | TGGATCCTTTGGGCATTGGG+AGG | + | chr5_3:59604336-59604355 | Msa0821450:intron | 55.0% |
| CTACACCTCCCAATGCCCAA+AGG | - | chr5_3:59604344-59604363 | None:intergenic | 55.0% | |
| CACGGACACTGGACACGACA+CGG | + | chr5_3:59599494-59599513 | Msa0821450:intron | 60.0% | |
| CGGTGTCCGTGGCTAATTCG+AGG | + | chr5_3:59599593-59599612 | Msa0821450:intron | 60.0% | |
| GCCGCAATTAAGGCGGCTAG+AGG | - | chr5_3:59600240-59600259 | None:intergenic | 60.0% | |
| ! | GGTGAAGGGCACAATGCCGA+TGG | - | chr5_3:59600752-59600771 | None:intergenic | 60.0% |
| CAACGGAAACCGCCGGTGAA+GGG | - | chr5_3:59600766-59600785 | None:intergenic | 60.0% | |
| TCAACGGAAACCGCCGGTGA+AGG | - | chr5_3:59600767-59600786 | None:intergenic | 60.0% | |
| TGGCAACACCACTAAGGCGG+CGG | + | chr5_3:59601101-59601120 | Msa0821450:intron | 60.0% | |
| TCGTCATACCGCCGCCTTAG+TGG | - | chr5_3:59601112-59601131 | None:intergenic | 60.0% | |
| TTGTGCTGGGTGTGAGAGGC+TGG | + | chr5_3:59601404-59601423 | Msa0821450:intron | 60.0% | |
| TGTGCTGGGTGTGAGAGGCT+GGG | + | chr5_3:59601405-59601424 | Msa0821450:intron | 60.0% | |
| AGGACCACCGCATCTTTGCC+AGG | + | chr5_3:59602700-59602719 | Msa0821450:intron | 60.0% | |
| TGCGGTCGTTACAGGTTGCC+AGG | + | chr5_3:59602998-59603017 | Msa0821450:CDS | 60.0% | |
| GGTCGTTACAGGTTGCCAGG+TGG | + | chr5_3:59603001-59603020 | Msa0821450:CDS | 60.0% | |
| TGCCAGGTGGTTGCAGTCAC+AGG | + | chr5_3:59603014-59603033 | Msa0821450:CDS | 60.0% | |
| GAGTTTGGAGGGGAGGGGAA+GGG | + | chr5_3:59603884-59603903 | Msa0821450:intron | 60.0% | |
| GAGGGGAAGGGAGGACTTTG+AGG | + | chr5_3:59603896-59603915 | Msa0821450:intron | 60.0% | |
| GGGGAAGGGAGGACTTTGAG+GGG | + | chr5_3:59603898-59603917 | Msa0821450:intron | 60.0% | |
| ! | GAAGGGAGGACTTTGAGGGG+TGG | + | chr5_3:59603901-59603920 | Msa0821450:intron | 60.0% |
| AATGGGAGGGGAGGGCTTTG+GGG | - | chr5_3:59604140-59604159 | None:intergenic | 60.0% | |
| GGGAAGGGAGGGAAAGGCTT+GGG | - | chr5_3:59604198-59604217 | None:intergenic | 60.0% | |
| GTTTGCGAGTGTGGAGGGGA+AGG | - | chr5_3:59604214-59604233 | None:intergenic | 60.0% | |
| CGGATCGACCTTCACCGCAT+AGG | - | chr5_3:59604542-59604561 | None:intergenic | 60.0% | |
| TGTGGCCCTCTCTGTCTGTG+TGG | + | chr5_3:59604998-59605017 | Msa0821450:three_prime_UTR | 60.0% | |
| ! | CGTTGTCGTGTCGGTGTCCG+TGG | + | chr5_3:59599582-59599601 | Msa0821450:intron | 65.0% |
| ! | GCTAGGGGCGTGGACAATGC+AGG | - | chr5_3:59600477-59600496 | None:intergenic | 65.0% |
| GGCATTGTGCCCTTCACCGG+CGG | + | chr5_3:59600754-59600773 | Msa0821450:intron | 65.0% | |
| GGATCTGCACTCCTGCCCCT+AGG | + | chr5_3:59601329-59601348 | Msa0821450:intron | 65.0% | |
| GGAGTTTGGAGGGGAGGGGA+AGG | + | chr5_3:59603883-59603902 | Msa0821450:intron | 65.0% | |
| TTTGGAGGGGAGGGGAAGGG+AGG | + | chr5_3:59603887-59603906 | Msa0821450:intron | 65.0% | |
| ! | ATGGGAGGGGAGGGCTTTGG+GGG | - | chr5_3:59604139-59604158 | None:intergenic | 65.0% |
| GGGGAAGGGAGGGAAAGGCT+TGG | - | chr5_3:59604199-59604218 | None:intergenic | 65.0% | |
| GTGGAGGGGAAGGGAGGGAA+AGG | - | chr5_3:59604204-59604223 | None:intergenic | 65.0% | |
| CGAGTGTGGAGGGGAAGGGA+GGG | - | chr5_3:59604209-59604228 | None:intergenic | 65.0% | |
| !! | TGGGAGGGGAGGGCTTTGGG+GGG | - | chr5_3:59604138-59604157 | None:intergenic | 70.0% |
| GCGAGTGTGGAGGGGAAGGG+AGG | - | chr5_3:59604210-59604229 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 59598858 | 59605106 | 59598858 | ID=Msa0821450;Name=Msa0821450 |
| chr5_3 | mRNA | 59598858 | 59605106 | 59598858 | ID=Msa0821450-mRNA-1;Parent=Msa0821450;Name=Msa0821450-mRNA-1;_AED=0.29;_eAED=0.29;_QI=49|0.83|1|1|1|1|7|527|255 |
| chr5_3 | exon | 59598858 | 59599114 | 59598858 | ID=Msa0821450-mRNA-1:exon:18172;Parent=Msa0821450-mRNA-1 |
| chr5_3 | exon | 59599245 | 59599370 | 59599245 | ID=Msa0821450-mRNA-1:exon:18173;Parent=Msa0821450-mRNA-1 |
| chr5_3 | exon | 59599786 | 59599877 | 59599786 | ID=Msa0821450-mRNA-1:exon:18174;Parent=Msa0821450-mRNA-1 |
| chr5_3 | exon | 59601912 | 59602012 | 59601912 | ID=Msa0821450-mRNA-1:exon:18175;Parent=Msa0821450-mRNA-1 |
| chr5_3 | exon | 59602702 | 59602810 | 59602702 | ID=Msa0821450-mRNA-1:exon:18176;Parent=Msa0821450-mRNA-1 |
| chr5_3 | exon | 59602985 | 59603035 | 59602985 | ID=Msa0821450-mRNA-1:exon:18177;Parent=Msa0821450-mRNA-1 |
| chr5_3 | exon | 59604499 | 59605106 | 59604499 | ID=Msa0821450-mRNA-1:exon:18178;Parent=Msa0821450-mRNA-1 |
| chr5_3 | five_prime_UTR | 59598858 | 59598906 | 59598858 | ID=Msa0821450-mRNA-1:five_prime_utr;Parent=Msa0821450-mRNA-1 |
| chr5_3 | CDS | 59598907 | 59599114 | 59598907 | ID=Msa0821450-mRNA-1:cds;Parent=Msa0821450-mRNA-1 |
| chr5_3 | CDS | 59599245 | 59599370 | 59599245 | ID=Msa0821450-mRNA-1:cds;Parent=Msa0821450-mRNA-1 |
| chr5_3 | CDS | 59599786 | 59599877 | 59599786 | ID=Msa0821450-mRNA-1:cds;Parent=Msa0821450-mRNA-1 |
| chr5_3 | CDS | 59601912 | 59602012 | 59601912 | ID=Msa0821450-mRNA-1:cds;Parent=Msa0821450-mRNA-1 |
| chr5_3 | CDS | 59602702 | 59602810 | 59602702 | ID=Msa0821450-mRNA-1:cds;Parent=Msa0821450-mRNA-1 |
| chr5_3 | CDS | 59602985 | 59603035 | 59602985 | ID=Msa0821450-mRNA-1:cds;Parent=Msa0821450-mRNA-1 |
| chr5_3 | CDS | 59604499 | 59604579 | 59604499 | ID=Msa0821450-mRNA-1:cds;Parent=Msa0821450-mRNA-1 |
| chr5_3 | three_prime_UTR | 59604580 | 59605106 | 59604580 | ID=Msa0821450-mRNA-1:three_prime_utr;Parent=Msa0821450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
