AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1462240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462240 MtrunA17_Chr8g0389661 98.152 487 7 1 1 487 1 485 0.0 991
Msa1462240 MtrunA17_Chr4g0046431 70.335 209 49 5 30 234 47 246 1.40e-97 296
Msa1462240 MtrunA17_Chr4g0040541 64.378 233 68 5 30 257 26 248 3.28e-95 289
Msa1462240 MtrunA17_Chr2g0282871 57.937 252 86 6 3 244 8 249 2.44e-90 278
Msa1462240 MtrunA17_Chr2g0324961 73.737 198 40 4 30 222 27 217 6.84e-89 273
Msa1462240 MtrunA17_Chr8g0367761 71.739 184 41 4 30 209 47 223 3.86e-87 268
Msa1462240 MtrunA17_Chr1g0198751 58.639 191 69 4 27 215 36 218 1.09e-74 243
Msa1462240 MtrunA17_Chr5g0422431 59.162 191 68 3 27 215 36 218 3.77e-73 238
Msa1462240 MtrunA17_Chr7g0227071 53.646 192 80 4 25 213 30 215 4.07e-62 210
Msa1462240 MtrunA17_Chr1g0198741 49.296 142 66 2 104 245 8 143 7.38e-37 137
Msa1462240 MtrunA17_Chr6g0484441 28.899 218 119 9 47 255 5 195 9.14e-14 72.4
Msa1462240 MtrunA17_Chr8g0359921 32.895 152 76 5 45 194 12 139 2.39e-13 71.2
Msa1462240 MtrunA17_Chr1g0147421 31.176 170 90 6 47 211 27 174 1.25e-12 69.3
Msa1462240 MtrunA17_Chr3g0124761 34.416 154 72 8 45 195 5 132 1.51e-12 68.2
Msa1462240 MtrunA17_Chr7g0253011 30.851 188 94 8 38 213 8 171 1.75e-12 68.9
Msa1462240 MtrunA17_Chr2g0318081 32.895 152 76 5 45 194 14 141 1.78e-12 68.6
Msa1462240 MtrunA17_Chr2g0318101 32.258 155 79 7 47 198 15 146 3.95e-12 67.8
Msa1462240 MtrunA17_Chr4g0047841 34.437 151 73 8 47 194 15 142 4.81e-12 67.4
Msa1462240 MtrunA17_Chr3g0139331 31.579 190 95 9 47 226 11 175 6.57e-12 67.0
Msa1462240 MtrunA17_Chr2g0309891 28.326 233 119 10 45 264 4 201 1.13e-11 66.2
Msa1462240 MtrunA17_Chr4g0060931 30.286 175 90 7 45 211 15 165 1.29e-11 66.2
Msa1462240 MtrunA17_Chr7g0263931 31.788 151 77 6 47 194 11 138 1.58e-11 65.5
Msa1462240 MtrunA17_Chr7g0217711 32.000 150 76 6 47 194 19 144 2.05e-11 62.8
Msa1462240 MtrunA17_Chr4g0056541 26.364 220 113 10 47 245 7 198 2.35e-11 65.5
Msa1462240 MtrunA17_Chr3g0091921 31.638 177 89 7 43 211 12 164 2.37e-11 64.7
Msa1462240 MtrunA17_Chr5g0433781 29.341 167 86 6 45 205 4 144 2.88e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1462240 AT4G29230.2 60.158 507 164 16 3 485 4 496 1.28e-180 515
Msa1462240 AT4G29230.1 60.039 508 164 17 3 485 4 497 9.19e-179 511
Msa1462240 AT4G29230.3 60.648 432 142 12 3 420 4 421 3.98e-153 443
Msa1462240 AT5G56620.2 49.170 482 145 15 10 474 4 402 2.06e-135 397
Msa1462240 AT5G56620.3 49.170 482 145 15 10 474 4 402 2.30e-135 397
Msa1462240 AT5G56620.1 51.834 409 117 11 10 399 4 351 3.74e-122 362
Msa1462240 AT4G28500.1 66.514 218 63 3 9 222 17 228 5.11e-97 295
Msa1462240 AT1G28470.1 67.513 197 50 3 30 219 53 242 3.31e-89 275
Msa1462240 AT1G25580.1 58.247 194 65 5 27 218 36 215 1.29e-68 226
Msa1462240 AT5G14490.4 53.299 197 81 7 25 218 30 218 3.21e-58 196
Msa1462240 AT5G14490.1 53.299 197 81 7 25 218 33 221 3.55e-58 196
Msa1462240 AT5G14490.2 53.299 197 81 7 25 218 30 218 3.77e-58 194
Msa1462240 AT5G14490.3 53.299 197 81 7 25 218 33 221 6.19e-58 196
Msa1462240 AT3G01600.1 50.510 196 87 5 23 215 28 216 5.52e-55 188
Msa1462240 AT1G01720.1 35.065 154 71 8 45 195 5 132 6.49e-14 72.8
Msa1462240 AT5G09330.5 35.526 152 70 8 47 194 6 133 1.25e-12 70.5
Msa1462240 AT5G09330.2 35.526 152 70 8 47 194 6 133 1.25e-12 70.5
Msa1462240 AT5G09330.4 35.526 152 70 8 47 194 6 133 1.25e-12 70.5
Msa1462240 AT5G09330.3 35.526 152 70 8 47 194 6 133 1.25e-12 70.5
Msa1462240 AT5G09330.1 35.526 152 70 8 47 194 6 133 1.25e-12 70.5
Msa1462240 AT3G15500.1 31.579 152 78 5 45 194 12 139 3.61e-12 67.8
Msa1462240 AT1G02220.1 30.872 149 76 5 48 193 4 128 4.11e-12 68.2
Msa1462240 AT1G33060.2 28.814 177 92 7 46 213 23 174 5.76e-12 68.6
Msa1462240 AT1G33060.1 28.814 177 92 7 46 213 23 174 6.15e-12 68.6
Msa1462240 AT1G52890.1 30.921 152 79 5 45 194 12 139 1.26e-11 66.2
Msa1462240 AT3G29035.1 30.682 176 88 7 45 211 22 172 2.43e-11 65.5
Msa1462240 AT4G27410.3 27.919 197 95 7 45 218 12 184 2.51e-11 65.1
Msa1462240 AT5G39610.1 30.222 225 116 10 45 259 18 211 3.24e-11 64.7
Msa1462240 AT5G53950.1 28.079 203 114 7 47 240 17 196 5.57e-11 64.7

Find 134 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCGAAATGATCAGATTTA+AGG 0.202690 tig0042094:+10467 None:intergenic
CTTCCATTGATATTATAATT+AGG 0.223614 tig0042094:+10619 None:intergenic
GCATTTGTGAAGCTTGTTAA+AGG 0.254170 tig0042094:+10505 None:intergenic
AGCTTCTTGTTGGTTTCTAA+TGG 0.256606 tig0042094:+7449 None:intergenic
ACCAGACCTGTTATGGTTAA+TGG 0.262903 tig0042094:-10886 Msa1462240:CDS
CCTGTTGTATATGCCTTTGA+TGG 0.263920 tig0042094:+10997 None:intergenic
TGGTTTAGAGGAAGTCATTA+TGG 0.275420 tig0042094:-8199 Msa1462240:CDS
GGTTGAAATACTCTTCTTAC+TGG 0.281746 tig0042094:-7422 Msa1462240:CDS
TGTTTACCATTAACCATAAC+AGG 0.301271 tig0042094:+10880 None:intergenic
CATCAAAACAAGTTCATGAT+TGG 0.304962 tig0042094:-6677 Msa1462240:three_prime_UTR
CACCTTAAATCTGATCATTT+CGG 0.305151 tig0042094:-10469 Msa1462240:CDS
GATTGGAAGGCCTACTTATA+TGG 0.307907 tig0042094:+9495 None:intergenic
CATCACCCAATTTGTCTTCT+CGG 0.314134 tig0042094:+10801 None:intergenic
CAGTAGAAACTTTGAGTCTT+AGG 0.334208 tig0042094:+6989 None:intergenic
CACAGCCAAGACAGTGTAAT+TGG 0.340413 tig0042094:-10705 Msa1462240:CDS
ATGGTTAATGGTAAACAAAA+AGG 0.341742 tig0042094:-10874 Msa1462240:CDS
GTGTGCAACGGAACAAGTTT+TGG 0.344961 tig0042094:-7149 Msa1462240:three_prime_UTR
AGGAAGAAACTGTTAGAATA+AGG 0.352029 tig0042094:+12306 None:intergenic
TATATGCCTTTGATGGTCTA+TGG 0.358040 tig0042094:+11004 None:intergenic
GAAAACCCGAGAAGACAAAT+TGG 0.361472 tig0042094:-10807 Msa1462240:CDS
TCAACCACTCAGCTTCTTGT+TGG 0.371776 tig0042094:+7439 None:intergenic
GGTTTAGAGGAAGTCATTAT+GGG 0.375357 tig0042094:-8198 Msa1462240:CDS
CATGTTCTTTGACTCAACTT+TGG 0.392039 tig0042094:+11418 None:intergenic
TATAATAATGATATTAATGT+AGG 0.399708 tig0042094:+6953 None:intergenic
TCCACAGCGAGGGCAGTGTT+TGG 0.404918 tig0042094:+11777 None:intergenic
TCAATCAATTCTTGATCTGT+TGG 0.405063 tig0042094:+11452 None:intergenic
TGGTAAGACCAGACCTGTTA+TGG 0.407089 tig0042094:-10893 Msa1462240:CDS
GGGAGGTGGAGAGATGATAG+TGG 0.407529 tig0042094:+9466 None:intergenic
GTGAAGCTTGTTAAAGGACT+AGG 0.412943 tig0042094:+10511 None:intergenic
TTAAAGTAGAGAGCAAATTC+TGG 0.413171 tig0042094:-12386 Msa1462240:five_prime_UTR
ATCACCCAATTTGTCTTCTC+GGG 0.413577 tig0042094:+10802 None:intergenic
CTTCTTCATGTTGTCCAAGA+TGG 0.416813 tig0042094:+10770 None:intergenic
TGGAGAGATGATAGTGGAGA+TGG 0.419657 tig0042094:+9472 None:intergenic
GGAAGAAGAGATAGTGGAAG+TGG 0.419947 tig0042094:-10601 Msa1462240:CDS
AATCTGAGTAACAATTTCCT+TGG 0.423878 tig0042094:+10567 None:intergenic
GAATTCATTCTCACTATTGA+AGG 0.424881 tig0042094:-11371 Msa1462240:CDS
GATGGATATGATGATTACTT+TGG 0.425161 tig0042094:+7255 None:intergenic
GATGTGTGATGGAGGGGAGG+TGG 0.425831 tig0042094:+9452 None:intergenic
ATCAATGGAAGAAGAGATAG+TGG 0.430228 tig0042094:-10607 Msa1462240:CDS
TCCTTGTAAGTCACACTCTT+CGG 0.430646 tig0042094:+10948 None:intergenic
GAAACAAGATGGCACAAAAC+TGG 0.433929 tig0042094:-10913 Msa1462240:CDS
AACAAGCTTCACAAATGCCT+TGG 0.435738 tig0042094:-10500 Msa1462240:CDS
GATAGAAAGAAAGAAATAGA+AGG 0.438700 tig0042094:+12275 None:intergenic
GATGATAGTGGAGATGGGAT+TGG 0.442110 tig0042094:+9478 None:intergenic
ATCAGGAGGCTCATGTGATC+AGG 0.445075 tig0042094:-9648 Msa1462240:CDS
ATTAGTGCAACAACAACAAC+TGG 0.448672 tig0042094:-10661 Msa1462240:CDS
CCATCAAAGGCATATACAAC+AGG 0.455100 tig0042094:-10997 Msa1462240:CDS
ACCATTAACCATAACAGGTC+TGG 0.456313 tig0042094:+10885 None:intergenic
CTATCATTATAGGTTGGAAT+AGG 0.457175 tig0042094:-9701 Msa1462240:intron
TACAATATGCACAAACTCAA+TGG 0.460608 tig0042094:+6791 None:intergenic
GAACCTAATTATAATATCAA+TGG 0.462340 tig0042094:-10622 Msa1462240:CDS
AATAAATATAAATAATATGA+TGG 0.464405 tig0042094:+6910 None:intergenic
GGATCAAATTTCACTCCTGC+TGG 0.469166 tig0042094:+11473 None:intergenic
CATCATCATGATTAGAATGA+AGG 0.470307 tig0042094:-7372 Msa1462240:exon
CCCTCGTGACATCAAGTTGA+GGG 0.476486 tig0042094:-7019 Msa1462240:three_prime_UTR
TCAGACCAATTACACTGTCT+TGG 0.476749 tig0042094:+10700 None:intergenic
GATGAAATGTCTGCTGTTGT+TGG 0.479390 tig0042094:-10538 Msa1462240:CDS
CTCACTATTGAAGGAGAAGA+TGG 0.486078 tig0042094:-11362 Msa1462240:CDS
AAGGTCTGCGTCTGGTTTAG+AGG 0.487143 tig0042094:-8211 Msa1462240:CDS
CTGCGTTTGCACTAATCTGC+TGG 0.490246 tig0042094:+9522 None:intergenic
ACAAGAGAAATGCAAGCATC+AGG 0.490268 tig0042094:-9665 Msa1462240:CDS
AACTAAGGTGGCTTTAAAGA+AGG 0.494819 tig0042094:+12354 None:intergenic
CTTGTTCTCTACACCAACTT+CGG 0.499621 tig0042094:-10838 Msa1462240:CDS
GGAGAGATGATAGTGGAGAT+GGG 0.502154 tig0042094:+9473 None:intergenic
CTAATATATCAATCTCTTGA+GGG 0.504687 tig0042094:-11982 Msa1462240:five_prime_UTR
AGTGTTTGGATCCACACAAC+TGG 0.507034 tig0042094:+11791 None:intergenic
CATTCTAATCATGATGATGA+TGG 0.514227 tig0042094:+7376 None:intergenic
TGAAGCTTGTTAAAGGACTA+GGG 0.515511 tig0042094:+10512 None:intergenic
AGGCACCGAAGTTCATAAAC+CGG 0.516038 tig0042094:+7200 None:intergenic
ATAATAATGATATTAATGTA+GGG 0.525986 tig0042094:+6954 None:intergenic
GGTGGTGGAAGGTCTGCGTC+TGG 0.526615 tig0042094:-8219 Msa1462240:CDS
TGTGACTTACAAGGAAGTAC+AGG 0.531187 tig0042094:-10940 Msa1462240:CDS
GTGATTATGCTAAGTGGTGT+TGG 0.531304 tig0042094:-11960 Msa1462240:five_prime_UTR
AGAATGAATTCATCAATCAA+AGG 0.532417 tig0042094:+11383 None:intergenic
CTCTCTACTTTAACTGACTG+AGG 0.532592 tig0042094:+12396 None:intergenic
AAAACCCGAGAAGACAAATT+GGG 0.533154 tig0042094:-10806 Msa1462240:CDS
CATGGTAAGAATTGTCATCA+AGG 0.534349 tig0042094:+9420 None:intergenic
GTGATGCATCAATACCATCT+TGG 0.536833 tig0042094:-10784 Msa1462240:CDS
TTGGAAAGTGAGTTGAGGTA+TGG 0.540037 tig0042094:+7284 None:intergenic
TTTAAGGTGTTGAATATCCA+AGG 0.540367 tig0042094:+10483 None:intergenic
CAGCAACAACATCATAAACT+AGG 0.542717 tig0042094:-8240 Msa1462240:CDS
TGATGGTAGATGTGTGATGG+AGG 0.542872 tig0042094:+9444 None:intergenic
AAGTGGAAGTTCTTCTTCCA+AGG 0.544042 tig0042094:-10584 Msa1462240:CDS
TCTAATATATCAATCTCTTG+AGG 0.544719 tig0042094:-11983 Msa1462240:five_prime_UTR
ACAACAACTGGTGAAGGAAG+TGG 0.551888 tig0042094:-10649 Msa1462240:CDS
GTAGATGTGTGATGGAGGGG+AGG 0.553746 tig0042094:+9449 None:intergenic
CAACATGAAGAAGAGAAAGA+AGG 0.555164 tig0042094:-10760 Msa1462240:CDS
AGAATTGTCATCAAGGATGA+TGG 0.555788 tig0042094:+9427 None:intergenic
GAATGAATTCATCAATCAAA+GGG 0.558039 tig0042094:+11384 None:intergenic
ACGCAGCTTTCCATATAAGT+AGG 0.560422 tig0042094:-9505 Msa1462240:CDS
TGTGGACACAAATTTGATCA+AGG 0.561466 tig0042094:-11760 Msa1462240:CDS
TTATAGGTTGGAATAGGAGA+AGG 0.569160 tig0042094:-9695 Msa1462240:intron
CAACATCATAAACTAGGTGG+TGG 0.571157 tig0042094:-8234 Msa1462240:CDS
AGATAGATAGATATAAACTA+AGG 0.572710 tig0042094:+12339 None:intergenic
ACCGAAGAGTGTGACTTACA+AGG 0.573730 tig0042094:-10949 Msa1462240:CDS
TGATCTCATAGATTCTAAGC+TGG 0.574339 tig0042094:-11821 Msa1462240:CDS
AAACTGTTAGAATAAGGTTG+AGG 0.575223 tig0042094:+12312 None:intergenic
CAAATTTGTGTCCACAGCGA+GGG 0.577429 tig0042094:+11767 None:intergenic
GATGGTAGATGTGTGATGGA+GGG 0.582790 tig0042094:+9445 None:intergenic
TCCCTCGTGACATCAAGTTG+AGG 0.584358 tig0042094:-7020 Msa1462240:three_prime_UTR
ATGGTAGATGTGTGATGGAG+GGG 0.584375 tig0042094:+9446 None:intergenic
CAAATTTGATCAAGGCAAGC+CGG 0.585518 tig0042094:-11752 Msa1462240:intron
CTGTTAGAATAAGGTTGAGG+TGG 0.589168 tig0042094:+12315 None:intergenic
ATCATAAACTAGGTGGTGGA+AGG 0.591383 tig0042094:-8230 Msa1462240:CDS
TCCAAACACTGCCCTCGCTG+TGG 0.598125 tig0042094:-11778 Msa1462240:CDS
CTGGAAGAGCACCAGTTGTG+TGG 0.599801 tig0042094:-11802 Msa1462240:CDS
ATACAACAGGAACACGAAAG+AGG 0.605890 tig0042094:-10984 Msa1462240:CDS
TACTTTAACTGACTGAGGCA+AGG 0.609591 tig0042094:+12401 None:intergenic
GGATGATGGTAGATGTGTGA+TGG 0.610477 tig0042094:+9441 None:intergenic
GCAACAACAACAACTGGTGA+AGG 0.614557 tig0042094:-10655 Msa1462240:CDS
TGGAACTAACAGGATTGGCT+AGG 0.614683 tig0042094:-11500 Msa1462240:intron
ATAGTGGAGATGGGATTGGA+AGG 0.617201 tig0042094:+9482 None:intergenic
TCCCTCAACTTGATGTCACG+AGG 0.618575 tig0042094:+7018 None:intergenic
TTGTTGTCATGAGGGTCGAC+TGG 0.619843 tig0042094:+7399 None:intergenic
TTGAGGGTGATTATGCTAAG+TGG 0.628559 tig0042094:-11966 Msa1462240:five_prime_UTR
TAGATAGATATAAACTAAGG+TGG 0.629951 tig0042094:+12342 None:intergenic
TCAAATTTGTGTCCACAGCG+AGG 0.631442 tig0042094:+11766 None:intergenic
GATTGGCTAGGTCTACCAGC+AGG 0.635385 tig0042094:-11488 Msa1462240:CDS
TGATGATGGTTGTTGTCATG+AGG 0.638720 tig0042094:+7390 None:intergenic
AGGAGGCTCATGTGATCAGG+AGG 0.640907 tig0042094:-9645 Msa1462240:CDS
TTATTAATATAATACTAACA+AGG 0.644453 tig0042094:+11895 None:intergenic
GATGATGGTTGTTGTCATGA+GGG 0.647114 tig0042094:+7391 None:intergenic
CCCTCAACTTGATGTCACGA+GGG 0.649331 tig0042094:+7019 None:intergenic
AGAGAAATGCAAGCATCAGG+AGG 0.653970 tig0042094:-9662 Msa1462240:CDS
GAAACACTAACTGTGTGCAA+CGG 0.654931 tig0042094:-7161 Msa1462240:three_prime_UTR
GTACAGGAGGAGAAACAAGA+TGG 0.661050 tig0042094:-10924 Msa1462240:CDS
ACAACTGGTGAAGGAAGTGG+TGG 0.665064 tig0042094:-10646 Msa1462240:CDS
GACTTACAAGGAAGTACAGG+AGG 0.666650 tig0042094:-10937 Msa1462240:CDS
GTTTAGAGGAAGTCATTATG+GGG 0.668096 tig0042094:-8197 Msa1462240:CDS
AAAAGTGACAAAGAACAAAG+GGG 0.680561 tig0042094:-7123 Msa1462240:three_prime_UTR
AACGTCGTCTGATATCAAAG+AGG 0.681906 tig0042094:-8166 Msa1462240:intron
GAAACCAACAAGAAGCTGAG+TGG 0.685593 tig0042094:-7443 Msa1462240:CDS
GGAGCATGATTGTTGAAACA+TGG 0.690838 tig0042094:+9402 None:intergenic
CAACAACATCATAAACTAGG+TGG 0.704443 tig0042094:-8237 Msa1462240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATAAAAAATTAAGAAAAT+TGG + tig0042094:7048-7067 None:intergenic 10.0%
!!! CAATTTTCTTAATTTTTTAT+TGG - tig0042094:7046-7065 Msa1462240:three_prime_UTR 10.0%
!! TTATTAATATAATACTAACA+AGG + tig0042094:7192-7211 None:intergenic 10.0%
!! AAAAATAAAAAGCAATTAAA+GGG + tig0042094:7550-7569 None:intergenic 10.0%
!! TAAAAATAAAAAGCAATTAA+AGG + tig0042094:7551-7570 None:intergenic 10.0%
!!! ATTTTTAATTTGAATTTCAA+TGG - tig0042094:7564-7583 Msa1462240:intron 10.0%
!! AATTAATTAATTAATTAACC+TGG + tig0042094:7776-7795 None:intergenic 10.0%
!!! AAAAAAATTATCTCTAATTT+TGG + tig0042094:8915-8934 None:intergenic 10.0%
!! AAAAAGAAAAGAAAAAAAAA+AGG - tig0042094:12008-12027 Msa1462240:five_prime_UTR 10.0%
!! ATAATAATGATATTAATGTA+GGG + tig0042094:12133-12152 None:intergenic 10.0%
!! TATAATAATGATATTAATGT+AGG + tig0042094:12134-12153 None:intergenic 10.0%
!! ATCATGTAGAAATTAAAATT+TGG + tig0042094:6994-7013 None:intergenic 15.0%
!!! TAATTTTTTATTGGTTTTGT+AGG - tig0042094:7055-7074 Msa1462240:three_prime_UTR 15.0%
!! ATTAATTTAAATTCTCAGTT+AGG - tig0042094:7849-7868 Msa1462240:intron 15.0%
!! ATAATTTGAAAAAATGAAAG+TGG + tig0042094:8776-8795 None:intergenic 15.0%
!! TTATATGAAATTTCAACATT+CGG - tig0042094:9073-9092 Msa1462240:intron 15.0%
!! ATATTTGATACTATCATTAT+AGG - tig0042094:9373-9392 Msa1462240:intron 15.0%
!!! AATAATTTTCAATTTTGTCT+TGG - tig0042094:9958-9977 Msa1462240:intron 15.0%
!! ACTAGTACATTAAATAAAAT+CGG + tig0042094:10239-10258 None:intergenic 15.0%
!! AAAAAAAAATTGTGTTTGTT+CGG - tig0042094:10463-10482 Msa1462240:CDS 15.0%
!!! TAAATTCATTGATTTATACT+AGG - tig0042094:10659-10678 Msa1462240:CDS 15.0%
!! AGTCTTTAGTTATAAAAAAT+AGG + tig0042094:11068-11087 None:intergenic 15.0%
!! AGATAGATAGATATAAACTA+AGG + tig0042094:6748-6767 None:intergenic 20.0%
!! AGAAATAGAAGGAAAAAAAA+AGG + tig0042094:6801-6820 None:intergenic 20.0%
!! GAACCTAATTATAATATCAA+TGG - tig0042094:8462-8481 Msa1462240:intron 20.0%
!! CTTCCATTGATATTATAATT+AGG + tig0042094:8468-8487 None:intergenic 20.0%
!! AACTTTAATAATTTGACTCA+CGG + tig0042094:10061-10080 None:intergenic 20.0%
!!! TAGATTTTTAAAAGAGAATG+AGG - tig0042094:10132-10151 Msa1462240:intron 20.0%
!! ACCTATTTATTTATTTATCG+TGG - tig0042094:10159-10178 Msa1462240:intron 20.0%
!! CTAGTACATTAAATAAAATC+GGG + tig0042094:10238-10257 None:intergenic 20.0%
!! TAGTTCTCTTAAGTTAATAA+AGG + tig0042094:10347-10366 None:intergenic 20.0%
!!! TTGTGAATTTTAACAAATCA+TGG + tig0042094:10428-10447 None:intergenic 20.0%
!!! CAAACACAATTTTTTTTTAC+TGG + tig0042094:10461-10480 None:intergenic 20.0%
!! AATAAAGATGAAGATGAAAA+TGG + tig0042094:11096-11115 None:intergenic 20.0%
!! GAAAAAAAAGAAGATGAATA+TGG + tig0042094:11186-11205 None:intergenic 20.0%
!! CATGAAAAGAAGATTAATTA+GGG + tig0042094:11583-11602 None:intergenic 20.0%
!! TCATGAAAAGAAGATTAATT+AGG + tig0042094:11584-11603 None:intergenic 20.0%
!!! ATGTTGTCTTTTGTTTATTT+GGG + tig0042094:11754-11773 None:intergenic 20.0%
!! AAAAAGAGCAAAAATAACTA+AGG + tig0042094:11854-11873 None:intergenic 20.0%
! TAGATAGATATAAACTAAGG+TGG + tig0042094:6745-6764 None:intergenic 25.0%
! GATAGAAAGAAAGAAATAGA+AGG + tig0042094:6812-6831 None:intergenic 25.0%
! GACTGAGAATATAAAAGAAA+TGG + tig0042094:6899-6918 None:intergenic 25.0%
! TCTAATATATCAATCTCTTG+AGG - tig0042094:7101-7120 Msa1462240:three_prime_UTR 25.0%
! CTAATATATCAATCTCTTGA+GGG - tig0042094:7102-7121 Msa1462240:three_prime_UTR 25.0%
!!! TTATGTCACCATAGTTTTAA+AGG + tig0042094:7394-7413 None:intergenic 25.0%
! ACTATGGTGACATAATTTAA+TGG - tig0042094:7399-7418 Msa1462240:CDS 25.0%
!! TATAATCCCTTTTCTCATTT+AGG - tig0042094:7426-7445 Msa1462240:CDS 25.0%
! GAATGAATTCATCAATCAAA+GGG + tig0042094:7703-7722 None:intergenic 25.0%
! AGAATGAATTCATCAATCAA+AGG + tig0042094:7704-7723 None:intergenic 25.0%
! ATGGTTAATGGTAAACAAAA+AGG - tig0042094:8210-8229 Msa1462240:CDS 25.0%
! TTGAATGTAACTATGTATGT+CGG + tig0042094:8753-8772 None:intergenic 25.0%
! TCAAACACTTACAAATACTT+TGG + tig0042094:8827-8846 None:intergenic 25.0%
! ACATGAAATGAGTTTAATGA+AGG + tig0042094:8860-8879 None:intergenic 25.0%
! AATATAGCATAGCATTTGAT+TGG - tig0042094:8969-8988 Msa1462240:intron 25.0%
! AAAGAACATGCATGAAATTA+AGG - tig0042094:9128-9147 Msa1462240:intron 25.0%
! AAGAACATGCATGAAATTAA+GGG - tig0042094:9129-9148 Msa1462240:intron 25.0%
!! GTCCATACAAATTAATTTTG+CGG + tig0042094:9210-9229 None:intergenic 25.0%
!! AACATTTTCTTTTCTTAGCT+AGG + tig0042094:9288-9307 None:intergenic 25.0%
! TTGATACTATCATTATAGGT+TGG - tig0042094:9377-9396 Msa1462240:intron 25.0%
!! CCTGAAAATTTTCATTTTGT+TGG + tig0042094:9706-9725 None:intergenic 25.0%
!! CCAACAAAATGAAAATTTTC+AGG - tig0042094:9703-9722 Msa1462240:intron 25.0%
! GCCACGATAAATAAATAAAT+AGG + tig0042094:10163-10182 None:intergenic 25.0%
! TAAAAGTTCTATCACGATTT+AGG + tig0042094:10321-10340 None:intergenic 25.0%
!!! TTTTTTTTACTGGAAAGAAC+AGG + tig0042094:10451-10470 None:intergenic 25.0%
!!! TTAACTTGGTGCAAATTAAT+GGG - tig0042094:10580-10599 Msa1462240:CDS 25.0%
! TCAATATGTTGAACCAAAAT+GGG - tig0042094:10607-10626 Msa1462240:CDS 25.0%
!!! TCATTGATTTATACTAGGAA+AGG - tig0042094:10664-10683 Msa1462240:CDS 25.0%
!!! TAGGAAAGGTTTTATATATG+TGG - tig0042094:10678-10697 Msa1462240:CDS 25.0%
! ATGTATAATATGTATCCACA+TGG - tig0042094:10809-10828 Msa1462240:CDS 25.0%
!!! CATTTTAAAGATCTAAAGAG+AGG + tig0042094:11208-11227 None:intergenic 25.0%
!!! ATTTTTTACAAACAAGACCA+AGG + tig0042094:11425-11444 None:intergenic 25.0%
!!! GATGTTGTCTTTTGTTTATT+TGG + tig0042094:11755-11774 None:intergenic 25.0%
! AAAAAAGTGACAAAGAACAA+AGG - tig0042094:11959-11978 Msa1462240:five_prime_UTR 25.0%
! AAAAAGTGACAAAGAACAAA+GGG - tig0042094:11960-11979 Msa1462240:five_prime_UTR 25.0%
! AAAAATATCTCAATATCGCT+TGG + tig0042094:12445-12464 None:intergenic 25.0%
CAGTGAGAGAAGAAAAATAA+AGG + tig0042094:6663-6682 None:intergenic 30.0%
TTAAAGTAGAGAGCAAATTC+TGG - tig0042094:6698-6717 Msa1462240:three_prime_UTR 30.0%
AAACTGTTAGAATAAGGTTG+AGG + tig0042094:6775-6794 None:intergenic 30.0%
AGGAAGAAACTGTTAGAATA+AGG + tig0042094:6781-6800 None:intergenic 30.0%
TAGCTACCTAAATGAGAAAA+GGG + tig0042094:7435-7454 None:intergenic 30.0%
ATAGCTACCTAAATGAGAAA+AGG + tig0042094:7436-7455 None:intergenic 30.0%
TAAAGGGAGAGAAATCAATA+AGG + tig0042094:7534-7553 None:intergenic 30.0%
TGAATTTCAATGGAACTAAC+AGG - tig0042094:7574-7593 Msa1462240:intron 30.0%
TCAATCAATTCTTGATCTGT+TGG + tig0042094:7635-7654 None:intergenic 30.0%
GAATTCATTCTCACTATTGA+AGG - tig0042094:7713-7732 Msa1462240:intron 30.0%
! AATTAACCTGGAAGTTTTTC+AGG + tig0042094:7764-7783 None:intergenic 30.0%
AAGAAATAAACTTGAGCAAG+AGG - tig0042094:7953-7972 Msa1462240:intron 30.0%
AGAAATAAACTTGAGCAAGA+GGG - tig0042094:7954-7973 Msa1462240:intron 30.0%
CAAAGTTAGGTGACTTAATT+AGG + tig0042094:8005-8024 None:intergenic 30.0%
!! AAGTCACCTAACTTTGATTT+TGG - tig0042094:8009-8028 Msa1462240:intron 30.0%
TCATTGCCAAAATCAAAGTT+AGG + tig0042094:8018-8037 None:intergenic 30.0%
!! GATTTTGGCAATGAATTTTC+AGG - tig0042094:8024-8043 Msa1462240:intron 30.0%
TGTTTACCATTAACCATAAC+AGG + tig0042094:8207-8226 None:intergenic 30.0%
AATCTGAGTAACAATTTCCT+TGG + tig0042094:8520-8539 None:intergenic 30.0%
!! TTTAAGGTGTTGAATATCCA+AGG + tig0042094:8604-8623 None:intergenic 30.0%
CACCTTAAATCTGATCATTT+CGG - tig0042094:8615-8634 Msa1462240:intron 30.0%
!!! CATCATAGCTTTTTCGAAAT+GGG + tig0042094:8647-8666 None:intergenic 30.0%
!!! TCATCATAGCTTTTTCGAAA+TGG + tig0042094:8648-8667 None:intergenic 30.0%
ATTTCGAAAAAGCTATGATG+AGG - tig0042094:8647-8666 Msa1462240:intron 30.0%
ATGAAATTTCAACATTCGGT+TGG - tig0042094:9077-9096 Msa1462240:intron 30.0%
ATGCATGAAATTAAGGGTTA+AGG - tig0042094:9135-9154 Msa1462240:intron 30.0%
!! CACCGCAAAATTAATTTGTA+TGG - tig0042094:9205-9224 Msa1462240:intron 30.0%
! TTTTCTTTTCTTAGCTAGGT+GGG + tig0042094:9284-9303 None:intergenic 30.0%
! ATTTTCTTTTCTTAGCTAGG+TGG + tig0042094:9285-9304 None:intergenic 30.0%
! CTATCATTATAGGTTGGAAT+AGG - tig0042094:9383-9402 Msa1462240:CDS 30.0%
! ACTCATCGTTAAACTTTTTG+AGG - tig0042094:9927-9946 Msa1462240:intron 30.0%
TTTACTCAACCAAATACATG+TGG - tig0042094:10537-10556 Msa1462240:CDS 30.0%
!! CTTAACTTGGTGCAAATTAA+TGG - tig0042094:10579-10598 Msa1462240:CDS 30.0%
!!! TTTTGGTTCAACATATTGAG+TGG + tig0042094:10606-10625 None:intergenic 30.0%
CTCAATATGTTGAACCAAAA+TGG - tig0042094:10606-10625 Msa1462240:CDS 30.0%
CAATATGTTGAACCAAAATG+GGG - tig0042094:10608-10627 Msa1462240:CDS 30.0%
!! ACAGTTTCATGCTTGTTATT+TGG + tig0042094:10707-10726 None:intergenic 30.0%
TCATAAAATAATGCCCACTA+GGG - tig0042094:10993-11012 Msa1462240:CDS 30.0%
! TTAGCTATTTCACACAAGAA+AGG - tig0042094:11342-11361 Msa1462240:CDS 30.0%
!! TCATGTATTTTTGCATTCCT+TGG - tig0042094:11405-11424 Msa1462240:CDS 30.0%
GATATTCATTTCAAACTCTG+AGG + tig0042094:11530-11549 None:intergenic 30.0%
! CATTCTAATCATGATGATGA+TGG + tig0042094:11711-11730 None:intergenic 30.0%
CATCATCATGATTAGAATGA+AGG - tig0042094:11712-11731 Msa1462240:intron 30.0%
!!! ATGATTACTTTGGCTTTTGT+TGG + tig0042094:11822-11841 None:intergenic 30.0%
GATGGATATGATGATTACTT+TGG + tig0042094:11832-11851 None:intergenic 30.0%
AGAGCAAAAATAACTAAGGA+TGG + tig0042094:11850-11869 None:intergenic 30.0%
!!! GCTCTTTTTTCTTTCTTTTC+CGG - tig0042094:11865-11884 Msa1462240:exon 30.0%
TTTCCAATGAGAAAAATGAG+AGG + tig0042094:11907-11926 None:intergenic 30.0%
AAAAGTGACAAAGAACAAAG+GGG - tig0042094:11961-11980 Msa1462240:five_prime_UTR 30.0%
TACAATATGCACAAACTCAA+TGG + tig0042094:12296-12315 None:intergenic 30.0%
CATCAAAACAAGTTCATGAT+TGG - tig0042094:12407-12426 Msa1462240:five_prime_UTR 30.0%
!! AACTAAGGTGGCTTTAAAGA+AGG + tig0042094:6733-6752 None:intergenic 35.0%
CTAGTATGCAGTTACTTACA+AGG + tig0042094:6840-6859 None:intergenic 35.0%
TGATCTCATAGATTCTAAGC+TGG - tig0042094:7263-7282 Msa1462240:three_prime_UTR 35.0%
TGTGGACACAAATTTGATCA+AGG - tig0042094:7324-7343 Msa1462240:three_prime_UTR 35.0%
TTCAATGGAACTAACAGGAT+TGG - tig0042094:7579-7598 Msa1462240:intron 35.0%
CATGTTCTTTGACTCAACTT+TGG + tig0042094:7669-7688 None:intergenic 35.0%
! CTTTTTCCATAGACCATCAA+AGG - tig0042094:8074-8093 Msa1462240:intron 35.0%
! TATATGCCTTTGATGGTCTA+TGG + tig0042094:8083-8102 None:intergenic 35.0%
AAAACCCGAGAAGACAAATT+GGG - tig0042094:8278-8297 Msa1462240:intron 35.0%
CAACATGAAGAAGAGAAAGA+AGG - tig0042094:8324-8343 Msa1462240:intron 35.0%
ATTAGTGCAACAACAACAAC+TGG - tig0042094:8423-8442 Msa1462240:intron 35.0%
ATCAATGGAAGAAGAGATAG+TGG - tig0042094:8477-8496 Msa1462240:intron 35.0%
!! TGAAGCTTGTTAAAGGACTA+GGG + tig0042094:8575-8594 None:intergenic 35.0%
!! GCATTTGTGAAGCTTGTTAA+AGG + tig0042094:8582-8601 None:intergenic 35.0%
AGCCGAAATGATCAGATTTA+AGG + tig0042094:8620-8639 None:intergenic 35.0%
CATAGCATTTGATTGGAACA+TGG - tig0042094:8976-8995 Msa1462240:intron 35.0%
!! ACTGACACTGATTTATCATC+TGG + tig0042094:9237-9256 None:intergenic 35.0%
! TTATAGGTTGGAATAGGAGA+AGG - tig0042094:9389-9408 Msa1462240:CDS 35.0%
AGAATTGTCATCAAGGATGA+TGG + tig0042094:9660-9679 None:intergenic 35.0%
CATGGTAAGAATTGTCATCA+AGG + tig0042094:9667-9686 None:intergenic 35.0%
TCGCTAGGAAAAAACTATAG+CGG - tig0042094:9859-9878 Msa1462240:intron 35.0%
! ACTCACGGTTAAACATTTTG+AGG + tig0042094:10046-10065 None:intergenic 35.0%
TATCGTCATCGTTGATATTG+TGG - tig0042094:10264-10283 Msa1462240:intron 35.0%
GTCTCACATCAAGTATATTG+AGG + tig0042094:10299-10318 None:intergenic 35.0%
TCTCACTTTCCACATGTATT+TGG + tig0042094:10549-10568 None:intergenic 35.0%
AGAAAAGAGGTCTCTTAACT+TGG - tig0042094:10566-10585 Msa1462240:CDS 35.0%
TGATTGTCAATTGTCATCGA+TGG - tig0042094:10739-10758 Msa1462240:CDS 35.0%
CAGCAACAACATCATAAACT+AGG - tig0042094:10844-10863 Msa1462240:CDS 35.0%
CAACAACATCATAAACTAGG+TGG - tig0042094:10847-10866 Msa1462240:CDS 35.0%
TGGTTTAGAGGAAGTCATTA+TGG - tig0042094:10885-10904 Msa1462240:CDS 35.0%
GGTTTAGAGGAAGTCATTAT+GGG - tig0042094:10886-10905 Msa1462240:CDS 35.0%
GTTTAGAGGAAGTCATTATG+GGG - tig0042094:10887-10906 Msa1462240:CDS 35.0%
CTCATAAAATAATGCCCACT+AGG - tig0042094:10992-11011 Msa1462240:CDS 35.0%
! ACTATGATGACGTGGAAAAA+AGG - tig0042094:11463-11482 Msa1462240:CDS 35.0%
ACAATGCAATGGAAATTGAC+TGG + tig0042094:11490-11509 None:intergenic 35.0%
GTACACAGAAAACAATGCAA+TGG + tig0042094:11501-11520 None:intergenic 35.0%
ATCTTCATTACACTTCTCAC+AGG - tig0042094:11606-11625 Msa1462240:intron 35.0%
GGTTGAAATACTCTTCTTAC+TGG - tig0042094:11662-11681 Msa1462240:intron 35.0%
! TTTTGTTGGAAAGTGAGTTG+AGG + tig0042094:11808-11827 None:intergenic 35.0%
! CTTTTCCGGTTTATGAACTT+CGG - tig0042094:11879-11898 Msa1462240:five_prime_UTR 35.0%
CAGTAGAAACTTTGAGTCTT+AGG + tig0042094:12098-12117 None:intergenic 35.0%
TACTTTAACTGACTGAGGCA+AGG + tig0042094:6686-6705 None:intergenic 40.0%
CTCTCTACTTTAACTGACTG+AGG + tig0042094:6691-6710 None:intergenic 40.0%
CTGTTAGAATAAGGTTGAGG+TGG + tig0042094:6772-6791 None:intergenic 40.0%
ACAATGAACTGTGCAGGATA+AGG + tig0042094:6870-6889 None:intergenic 40.0%
ATCCTGCACAGTTCATTGTA+TGG - tig0042094:6871-6890 Msa1462240:three_prime_UTR 40.0%
ATCCATACAATGAACTGTGC+AGG + tig0042094:6876-6895 None:intergenic 40.0%
TTGAGGGTGATTATGCTAAG+TGG - tig0042094:7118-7137 Msa1462240:three_prime_UTR 40.0%
GTGATTATGCTAAGTGGTGT+TGG - tig0042094:7124-7143 Msa1462240:three_prime_UTR 40.0%
CAAATTTGATCAAGGCAAGC+CGG - tig0042094:7332-7351 Msa1462240:three_prime_UTR 40.0%
!! GCTGCGAACCTTTAAAACTA+TGG - tig0042094:7383-7402 Msa1462240:CDS 40.0%
CTCACTATTGAAGGAGAAGA+TGG - tig0042094:7722-7741 Msa1462240:intron 40.0%
!!! ACCTGGAAGTTTTTCAGGAT+GGG + tig0042094:7759-7778 None:intergenic 40.0%
!!! AACCTGGAAGTTTTTCAGGA+TGG + tig0042094:7760-7779 None:intergenic 40.0%
!! TTTTCAGGAGTGACAAGAGA+TGG - tig0042094:8039-8058 Msa1462240:intron 40.0%
CCTGTTGTATATGCCTTTGA+TGG + tig0042094:8090-8109 None:intergenic 40.0%
! CCATCAAAGGCATATACAAC+AGG - tig0042094:8087-8106 Msa1462240:intron 40.0%
ATACAACAGGAACACGAAAG+AGG - tig0042094:8100-8119 Msa1462240:intron 40.0%
TCCTTGTAAGTCACACTCTT+CGG + tig0042094:8139-8158 None:intergenic 40.0%
! TGTGACTTACAAGGAAGTAC+AGG - tig0042094:8144-8163 Msa1462240:intron 40.0%
GAAACAAGATGGCACAAAAC+TGG - tig0042094:8171-8190 Msa1462240:CDS 40.0%
ACCAGACCTGTTATGGTTAA+TGG - tig0042094:8198-8217 Msa1462240:CDS 40.0%
ACCATTAACCATAACAGGTC+TGG + tig0042094:8202-8221 None:intergenic 40.0%
CTTGTTCTCTACACCAACTT+CGG - tig0042094:8246-8265 Msa1462240:CDS 40.0%
! TTTTCGATTCTTGCCGAAGT+TGG + tig0042094:8262-8281 None:intergenic 40.0%
GAAAACCCGAGAAGACAAAT+TGG - tig0042094:8277-8296 Msa1462240:intron 40.0%
ATCACCCAATTTGTCTTCTC+GGG + tig0042094:8285-8304 None:intergenic 40.0%
CATCACCCAATTTGTCTTCT+CGG + tig0042094:8286-8305 None:intergenic 40.0%
GTGATGCATCAATACCATCT+TGG - tig0042094:8300-8319 Msa1462240:intron 40.0%
CTTCTTCATGTTGTCCAAGA+TGG + tig0042094:8317-8336 None:intergenic 40.0%
TCAGACCAATTACACTGTCT+TGG + tig0042094:8387-8406 None:intergenic 40.0%
AAGTGGAAGTTCTTCTTCCA+AGG - tig0042094:8500-8519 Msa1462240:intron 40.0%
GATGAAATGTCTGCTGTTGT+TGG - tig0042094:8546-8565 Msa1462240:intron 40.0%
!! GTGAAGCTTGTTAAAGGACT+AGG + tig0042094:8576-8595 None:intergenic 40.0%
AACAAGCTTCACAAATGCCT+TGG - tig0042094:8584-8603 Msa1462240:intron 40.0%
GTAACTATGTATGTCGGTGT+CGG + tig0042094:8747-8766 None:intergenic 40.0%
!! CACTGATTTATCATCTGGTC+AGG + tig0042094:9232-9251 None:intergenic 40.0%
ACAAGAGAAATGCAAGCATC+AGG - tig0042094:9419-9438 Msa1462240:CDS 40.0%
ACGCAGCTTTCCATATAAGT+AGG - tig0042094:9579-9598 Msa1462240:CDS 40.0%
GATTGGAAGGCCTACTTATA+TGG + tig0042094:9592-9611 None:intergenic 40.0%
GGAGCATGATTGTTGAAACA+TGG + tig0042094:9685-9704 None:intergenic 40.0%
CGCTAGGAAAAAACTATAGC+GGG - tig0042094:9860-9879 Msa1462240:intron 40.0%
CATGTGGAAAGTGAGAAAAG+AGG - tig0042094:10553-10572 Msa1462240:CDS 40.0%
! ATGCACAATCAACCCCATTT+TGG + tig0042094:10623-10642 None:intergenic 40.0%
! AAAATGGGGTTGATTGTGCA+TGG - tig0042094:10622-10641 Msa1462240:CDS 40.0%
CAACATCATAAACTAGGTGG+TGG - tig0042094:10850-10869 Msa1462240:CDS 40.0%
!! ATCATAAACTAGGTGGTGGA+AGG - tig0042094:10854-10873 Msa1462240:CDS 40.0%
AACGTCGTCTGATATCAAAG+AGG - tig0042094:10918-10937 Msa1462240:CDS 40.0%
! CTCTTTTCTCTTTCCCTAGT+GGG + tig0042094:11009-11028 None:intergenic 40.0%
CACTAGGGAAAGAGAAAAGA+GGG - tig0042094:11008-11027 Msa1462240:CDS 40.0%
!! AGCTTTTGACTATGATGACG+TGG - tig0042094:11455-11474 Msa1462240:CDS 40.0%
! GATGATGGTTGTTGTCATGA+GGG + tig0042094:11696-11715 None:intergenic 40.0%
!! TGATGATGGTTGTTGTCATG+AGG + tig0042094:11697-11716 None:intergenic 40.0%
! TTGGAAAGTGAGTTGAGGTA+TGG + tig0042094:11803-11822 None:intergenic 40.0%
!! GTGCCTCTCATTTTTCTCAT+TGG - tig0042094:11901-11920 Msa1462240:five_prime_UTR 40.0%
GAAACACTAACTGTGTGCAA+CGG - tig0042094:11923-11942 Msa1462240:five_prime_UTR 40.0%
AGTGTTTGGATCCACACAAC+TGG + tig0042094:7296-7315 None:intergenic 45.0%
CAAATTTGTGTCCACAGCGA+GGG + tig0042094:7320-7339 None:intergenic 45.0%
TCAAATTTGTGTCCACAGCG+AGG + tig0042094:7321-7340 None:intergenic 45.0%
ACCGCGACTATTATACGTAC+CGG + tig0042094:7354-7373 None:intergenic 45.0%
!! TGGAACTAACAGGATTGGCT+AGG - tig0042094:7584-7603 Msa1462240:intron 45.0%
GGATCAAATTTCACTCCTGC+TGG + tig0042094:7614-7633 None:intergenic 45.0%
ACCCATCCTGAAAAACTTCC+AGG - tig0042094:7755-7774 Msa1462240:intron 45.0%
! ACCGAAGAGTGTGACTTACA+AGG - tig0042094:8135-8154 Msa1462240:intron 45.0%
! GACTTACAAGGAAGTACAGG+AGG - tig0042094:8147-8166 Msa1462240:intron 45.0%
GTACAGGAGGAGAAACAAGA+TGG - tig0042094:8160-8179 Msa1462240:intron 45.0%
TGGTAAGACCAGACCTGTTA+TGG - tig0042094:8191-8210 Msa1462240:CDS 45.0%
CACAGCCAAGACAGTGTAAT+TGG - tig0042094:8379-8398 Msa1462240:intron 45.0%
GCAACAACAACAACTGGTGA+AGG - tig0042094:8429-8448 Msa1462240:intron 45.0%
ACAACAACTGGTGAAGGAAG+TGG - tig0042094:8435-8454 Msa1462240:intron 45.0%
!! GGAAGAAGAGATAGTGGAAG+TGG - tig0042094:8483-8502 Msa1462240:intron 45.0%
AGTAGCTAGCTAACCAACGT+TGG - tig0042094:9254-9273 Msa1462240:intron 45.0%
AGAGAAATGCAAGCATCAGG+AGG - tig0042094:9422-9441 Msa1462240:CDS 45.0%
! ATAGTGGAGATGGGATTGGA+AGG + tig0042094:9605-9624 None:intergenic 45.0%
!! GATGATAGTGGAGATGGGAT+TGG + tig0042094:9609-9628 None:intergenic 45.0%
!! GGAGAGATGATAGTGGAGAT+GGG + tig0042094:9614-9633 None:intergenic 45.0%
!! TGGAGAGATGATAGTGGAGA+TGG + tig0042094:9615-9634 None:intergenic 45.0%
! ATGGTAGATGTGTGATGGAG+GGG + tig0042094:9641-9660 None:intergenic 45.0%
! GATGGTAGATGTGTGATGGA+GGG + tig0042094:9642-9661 None:intergenic 45.0%
TGATGGTAGATGTGTGATGG+AGG + tig0042094:9643-9662 None:intergenic 45.0%
! GGATGATGGTAGATGTGTGA+TGG + tig0042094:9646-9665 None:intergenic 45.0%
! CCTCTTTTCTCTTTCCCTAG+TGG + tig0042094:11010-11029 None:intergenic 45.0%
CCACTAGGGAAAGAGAAAAG+AGG - tig0042094:11007-11026 Msa1462240:CDS 45.0%
GAAACCAACAAGAAGCTGAG+TGG - tig0042094:11641-11660 Msa1462240:intron 45.0%
TCAACCACTCAGCTTCTTGT+TGG + tig0042094:11648-11667 None:intergenic 45.0%
!! AGGCACCGAAGTTCATAAAC+CGG + tig0042094:11887-11906 None:intergenic 45.0%
! GTGTGCAACGGAACAAGTTT+TGG - tig0042094:11935-11954 Msa1462240:five_prime_UTR 45.0%
!!! TTTTTTCTAATATTTTTTAT+TGG - tig0042094:8929-8948 Msa1462240:intron 5.0%
!!! AATTATTAAAGTTTTATTAA+TGG - tig0042094:10068-10087 Msa1462240:intron 5.0%
!!! TCTTTTTTATAAATAAAAAT+TGG - tig0042094:10204-10223 Msa1462240:intron 5.0%
!!! CTTTTTTATAAATAAAAATT+GGG - tig0042094:10205-10224 Msa1462240:intron 5.0%
!!! TTTTTTATAAATAAAAATTG+GGG - tig0042094:10206-10225 Msa1462240:intron 5.0%
!! AATAAATATAAATAATATGA+TGG + tig0042094:12177-12196 None:intergenic 5.0%
GCCGGTACGTATAATAGTCG+CGG - tig0042094:7350-7369 Msa1462240:three_prime_UTR 50.0%
ACGTATAATAGTCGCGGTCG+CGG - tig0042094:7356-7375 Msa1462240:three_prime_UTR 50.0%
ACAACTGGTGAAGGAAGTGG+TGG - tig0042094:8438-8457 Msa1462240:intron 50.0%
!! ATGTATGTCGGTGTCGGACA+TGG + tig0042094:8741-8760 None:intergenic 50.0%
CTAGGTGGGTAAACCAACGT+TGG + tig0042094:9270-9289 None:intergenic 50.0%
ATCAGGAGGCTCATGTGATC+AGG - tig0042094:9436-9455 Msa1462240:CDS 50.0%
CTGCGTTTGCACTAATCTGC+TGG + tig0042094:9565-9584 None:intergenic 50.0%
ACAACTGCGATTGCATCGCT+AGG - tig0042094:9844-9863 Msa1462240:intron 50.0%
! AAGGTCTGCGTCTGGTTTAG+AGG - tig0042094:10873-10892 Msa1462240:CDS 50.0%
TTGTTGTCATGAGGGTCGAC+TGG + tig0042094:11688-11707 None:intergenic 50.0%
! TCCCTCGTGACATCAAGTTG+AGG - tig0042094:12064-12083 Msa1462240:intron 50.0%
CCCTCAACTTGATGTCACGA+GGG + tig0042094:12068-12087 None:intergenic 50.0%
!! CCCTCGTGACATCAAGTTGA+GGG - tig0042094:12065-12084 Msa1462240:intron 50.0%
TCCCTCAACTTGATGTCACG+AGG + tig0042094:12069-12088 None:intergenic 50.0%
!! CTGGAAGAGCACCAGTTGTG+TGG - tig0042094:7282-7301 Msa1462240:three_prime_UTR 55.0%
! GATTGGCTAGGTCTACCAGC+AGG - tig0042094:7596-7615 Msa1462240:intron 55.0%
AGGAGGCTCATGTGATCAGG+AGG - tig0042094:9439-9458 Msa1462240:CDS 55.0%
GGGAGGTGGAGAGATGATAG+TGG + tig0042094:9621-9640 None:intergenic 55.0%
! GTAGATGTGTGATGGAGGGG+AGG + tig0042094:9638-9657 None:intergenic 55.0%
TCCAAACACTGCCCTCGCTG+TGG - tig0042094:7306-7325 Msa1462240:three_prime_UTR 60.0%
TCCACAGCGAGGGCAGTGTT+TGG + tig0042094:7310-7329 None:intergenic 60.0%
! GATGTGTGATGGAGGGGAGG+TGG + tig0042094:9635-9654 None:intergenic 60.0%
CTGCTGCTGTTGCTGCCATG+TGG + tig0042094:10827-10846 None:intergenic 60.0%
!! GGTGGTGGAAGGTCTGCGTC+TGG - tig0042094:10865-10884 Msa1462240:CDS 65.0%
Chromosome Type Strat End Strand Name
tig0042094 gene 6641 12465 6641 ID=Msa1462240;Name=Msa1462240
tig0042094 mRNA 6641 12465 6641 ID=Msa1462240-mRNA-1;Parent=Msa1462240;Name=Msa1462240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=351|1|1|1|0.83|0.71|7|739|487
tig0042094 exon 6641 7478 6641 ID=Msa1462240-mRNA-1:exon:23580;Parent=Msa1462240-mRNA-1
tig0042094 exon 8167 8271 8167 ID=Msa1462240-mRNA-1:exon:23579;Parent=Msa1462240-mRNA-1
tig0042094 exon 9382 9711 9382 ID=Msa1462240-mRNA-1:exon:23578;Parent=Msa1462240-mRNA-1
tig0042094 exon 10438 11060 10438 ID=Msa1462240-mRNA-1:exon:23577;Parent=Msa1462240-mRNA-1
tig0042094 exon 11330 11510 11330 ID=Msa1462240-mRNA-1:exon:23576;Parent=Msa1462240-mRNA-1
tig0042094 exon 11753 12029 11753 ID=Msa1462240-mRNA-1:exon:23575;Parent=Msa1462240-mRNA-1
tig0042094 exon 12266 12465 12266 ID=Msa1462240-mRNA-1:exon:23574;Parent=Msa1462240-mRNA-1
tig0042094 five_prime_UTR 12266 12465 12266 ID=Msa1462240-mRNA-1:five_prime_utr;Parent=Msa1462240-mRNA-1
tig0042094 five_prime_UTR 11879 12029 11879 ID=Msa1462240-mRNA-1:five_prime_utr;Parent=Msa1462240-mRNA-1
tig0042094 CDS 11753 11878 11753 ID=Msa1462240-mRNA-1:cds;Parent=Msa1462240-mRNA-1
tig0042094 CDS 11330 11510 11330 ID=Msa1462240-mRNA-1:cds;Parent=Msa1462240-mRNA-1
tig0042094 CDS 10438 11060 10438 ID=Msa1462240-mRNA-1:cds;Parent=Msa1462240-mRNA-1
tig0042094 CDS 9382 9711 9382 ID=Msa1462240-mRNA-1:cds;Parent=Msa1462240-mRNA-1
tig0042094 CDS 8167 8271 8167 ID=Msa1462240-mRNA-1:cds;Parent=Msa1462240-mRNA-1
tig0042094 CDS 7380 7478 7380 ID=Msa1462240-mRNA-1:cds;Parent=Msa1462240-mRNA-1
tig0042094 three_prime_UTR 6641 7379 6641 ID=Msa1462240-mRNA-1:three_prime_utr;Parent=Msa1462240-mRNA-1
Gene Sequence

>Msa1462240

ATGATGAATAATAAGATGAGCAACGTTAGTAGCTCTGATCTCATAGATTCTAAGCTGGAAGAGCACCAGTTGTGTGGATCCAAACACTGCCCTCGCTGTGGACACAAATTTGATCAAGGCAAGCCGGATTGGCTAGGTCTACCAGCAGGAGTGAAATTTGATCCAACAGATCAAGAATTGATTGAACATCTTGAAGCCAAAGTTGAGTCAAAGAACATGCAGAAATCACACCCTTTGATTGATGAATTCATTCTCACTATTGAAGGAGAAGATGGAATTTGTTACACCCATCCTGAAAAACTTCCAGGAGTGACAAGAGATGGATTAAGCAGACACTTTTTCCATAGACCATCAAAGGCATATACAACAGGAACACGAAAGAGGAGAAAGATTCAAACCGAAGAGTGTGACTTACAAGGAAGTACAGGAGGAGAAACAAGATGGCACAAAACTGGTAAGACCAGACCTGTTATGGTTAATGGTAAACAAAAAGGTTGCAAGAAAATTCTTGTTCTCTACACCAACTTCGGCAAGAATCGAAAACCCGAGAAGACAAATTGGGTGATGCATCAATACCATCTTGGACAACATGAAGAAGAGAAAGAAGGAGAGCTTGTTGTTTCAAAGATATTTTATCAGACACAGCCAAGACAGTGTAATTGGTCTGATAATAATCAAAGAATAATTAGTGCAACAACAACAACTGGTGAAGGAAGTGGTGGAGAACCTAATTATAATATCAATGGAAGAAGAGATAGTGGAAGTGGAAGTTCTTCTTCCAAGGAAATTGTTACTCAGATTCATAGAGATGAAATGTCTGCTGTTGTTGGTGTCCCTAGTCCTTTAACAAGCTTCACAAATGCCTTGGATATTCAACACCTTAAATCTGATCATTTCGGCTTCAACCCATTTCGAAAAAGCTATGATGAGGTTGGAATAGGAGAAGGTTCTACAACAAGAGAAATGCAAGCATCAGGAGGCTCATGTGATCAGGAGGTGCATGAAAGACAGCATCATGTATTAGCACATCATCATCAACAACAACAACAACATCATCAGCAACAGCAACAGCAACAGCAACATGAGCATCATGTGCACCAGCAGATTAGTGCAAACGCAGCTTTCCATATAAGTAGGCCTTCCAATCCCATCTCCACTATCATCTCTCCACCTCCCCTCCATCACACATCTACCATCATCCTTGATGACAATTCTTACCATGTTTCAACAATCATGCTCCAACAAAATGAAAATTTTCAGCAACAGCAGCAGCAACAACATCATAAACTAGGTGGTGGAAGGTCTGCGTCTGGTTTAGAGGAAGTCATTATGGGGTGCACTTCAACGTCGTCTGATATCAAAGAGGAGTCATCCATTAGAAACCAACAAGAAGCTGAGTGGTTGAAATACTCTTCTTACTGGCCAGTCGACCCTCATGACAACAACCATCATCATCATGATTAG
Protein sequence

>Msa1462240

MMNNKMSNVSSSDLIDSKLEEHQLCGSKHCPRCGHKFDQGKPDWLGLPAGVKFDPTDQELIEHLEAKVESKNMQKSHPLIDEFILTIEGEDGICYTHPEKLPGVTRDGLSRHFFHRPSKAYTTGTRKRRKIQTEECDLQGSTGGETRWHKTGKTRPVMVNGKQKGCKKILVLYTNFGKNRKPEKTNWVMHQYHLGQHEEEKEGELVVSKIFYQTQPRQCNWSDNNQRIISATTTTGEGSGGEPNYNINGRRDSGSGSSSSKEIVTQIHRDEMSAVVGVPSPLTSFTNALDIQHLKSDHFGFNPFRKSYDEVGIGEGSTTREMQASGGSCDQEVHERQHHVLAHHHQQQQQHHQQQQQQQQHEHHVHQQISANAAFHISRPSNPISTIISPPPLHHTSTIILDDNSYHVSTIMLQQNENFQQQQQQQHHKLGGGRSASGLEEVIMGCTSTSSDIKEESSIRNQQEAEWLKYSSYWPVDPHDNNHHHHD*