Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707510 | XP_039685390.1 | 97.959 | 490 | 7 | 2 | 1 | 490 | 1 | 487 | 0.0 | 989 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707510 | sp|Q9M0F8|NAC75_ARATH | 60.078 | 511 | 162 | 19 | 3 | 488 | 4 | 497 | 3.61e-177 | 509 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707510 | G7L7D0 | 97.755 | 490 | 6 | 3 | 1 | 490 | 1 | 485 | 0.0 | 984 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0707510 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0704920 | Msa0707510 | 0.807986 | 3.866550e-50 | -8.615850e-47 |
| Msa0707510 | Msa1462240 | 0.856681 | 2.728735e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707510 | MtrunA17_Chr8g0389661 | 97.755 | 490 | 6 | 3 | 1 | 490 | 1 | 485 | 0.0 | 984 |
| Msa0707510 | MtrunA17_Chr4g0046431 | 69.484 | 213 | 52 | 5 | 30 | 238 | 47 | 250 | 7.79e-98 | 297 |
| Msa0707510 | MtrunA17_Chr4g0040541 | 73.846 | 195 | 40 | 4 | 30 | 219 | 26 | 214 | 5.25e-95 | 289 |
| Msa0707510 | MtrunA17_Chr2g0282871 | 63.182 | 220 | 67 | 5 | 3 | 218 | 8 | 217 | 7.36e-90 | 276 |
| Msa0707510 | MtrunA17_Chr2g0324961 | 73.737 | 198 | 40 | 4 | 30 | 222 | 27 | 217 | 5.17e-89 | 273 |
| Msa0707510 | MtrunA17_Chr8g0367761 | 71.739 | 184 | 41 | 4 | 30 | 209 | 47 | 223 | 3.25e-87 | 268 |
| Msa0707510 | MtrunA17_Chr1g0198751 | 53.394 | 221 | 92 | 5 | 27 | 245 | 36 | 247 | 5.25e-75 | 244 |
| Msa0707510 | MtrunA17_Chr5g0422431 | 59.162 | 191 | 68 | 3 | 27 | 215 | 36 | 218 | 4.09e-73 | 238 |
| Msa0707510 | MtrunA17_Chr7g0227071 | 53.646 | 192 | 80 | 4 | 25 | 213 | 30 | 215 | 3.75e-62 | 211 |
| Msa0707510 | MtrunA17_Chr1g0198741 | 48.951 | 143 | 66 | 3 | 104 | 246 | 8 | 143 | 3.24e-36 | 135 |
| Msa0707510 | MtrunA17_Chr6g0484441 | 29.680 | 219 | 117 | 9 | 47 | 256 | 5 | 195 | 1.54e-13 | 71.6 |
| Msa0707510 | MtrunA17_Chr8g0359921 | 32.895 | 152 | 76 | 5 | 45 | 194 | 12 | 139 | 2.06e-13 | 71.2 |
| Msa0707510 | MtrunA17_Chr3g0124761 | 34.416 | 154 | 72 | 8 | 45 | 195 | 5 | 132 | 1.13e-12 | 68.6 |
| Msa0707510 | MtrunA17_Chr1g0147421 | 31.176 | 170 | 90 | 6 | 47 | 211 | 27 | 174 | 1.36e-12 | 68.9 |
| Msa0707510 | MtrunA17_Chr2g0318081 | 32.895 | 152 | 76 | 5 | 45 | 194 | 14 | 141 | 1.79e-12 | 68.6 |
| Msa0707510 | MtrunA17_Chr7g0253011 | 30.851 | 188 | 94 | 8 | 38 | 213 | 8 | 171 | 2.00e-12 | 68.9 |
| Msa0707510 | MtrunA17_Chr2g0318101 | 32.258 | 155 | 79 | 7 | 47 | 198 | 15 | 146 | 3.24e-12 | 67.8 |
| Msa0707510 | MtrunA17_Chr4g0047841 | 34.437 | 151 | 73 | 8 | 47 | 194 | 15 | 142 | 3.95e-12 | 67.4 |
| Msa0707510 | MtrunA17_Chr3g0139331 | 31.579 | 190 | 95 | 9 | 47 | 226 | 11 | 175 | 7.08e-12 | 66.6 |
| Msa0707510 | MtrunA17_Chr4g0060931 | 30.286 | 175 | 90 | 7 | 45 | 211 | 15 | 165 | 1.23e-11 | 66.2 |
| Msa0707510 | MtrunA17_Chr2g0309891 | 32.051 | 156 | 74 | 7 | 45 | 194 | 4 | 133 | 1.30e-11 | 65.9 |
| Msa0707510 | MtrunA17_Chr7g0263931 | 31.788 | 151 | 77 | 6 | 47 | 194 | 11 | 138 | 1.35e-11 | 65.9 |
| Msa0707510 | MtrunA17_Chr7g0217711 | 32.000 | 150 | 76 | 6 | 47 | 194 | 19 | 144 | 2.03e-11 | 62.8 |
| Msa0707510 | MtrunA17_Chr3g0091921 | 31.638 | 177 | 89 | 7 | 43 | 211 | 12 | 164 | 2.07e-11 | 65.1 |
| Msa0707510 | MtrunA17_Chr5g0433781 | 29.341 | 167 | 86 | 6 | 45 | 205 | 4 | 144 | 2.61e-11 | 66.2 |
| Msa0707510 | MtrunA17_Chr7g0214071 | 28.571 | 203 | 109 | 11 | 47 | 243 | 15 | 187 | 3.11e-11 | 63.9 |
| Msa0707510 | MtrunA17_Chr2g0309331 | 32.000 | 175 | 87 | 9 | 45 | 211 | 8 | 158 | 5.24e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0707510 | AT4G29230.2 | 60.196 | 510 | 162 | 18 | 3 | 488 | 4 | 496 | 4.11e-180 | 514 |
| Msa0707510 | AT4G29230.1 | 60.078 | 511 | 162 | 19 | 3 | 488 | 4 | 497 | 3.67e-178 | 509 |
| Msa0707510 | AT4G29230.3 | 60.690 | 435 | 140 | 14 | 3 | 423 | 4 | 421 | 1.39e-152 | 442 |
| Msa0707510 | AT5G56620.3 | 48.454 | 485 | 147 | 14 | 10 | 477 | 4 | 402 | 3.81e-135 | 397 |
| Msa0707510 | AT5G56620.2 | 48.454 | 485 | 147 | 14 | 10 | 477 | 4 | 402 | 4.24e-135 | 396 |
| Msa0707510 | AT5G56620.1 | 51.456 | 412 | 117 | 11 | 10 | 402 | 4 | 351 | 4.36e-122 | 362 |
| Msa0707510 | AT4G28500.1 | 66.514 | 218 | 63 | 3 | 9 | 222 | 17 | 228 | 3.40e-97 | 296 |
| Msa0707510 | AT1G28470.1 | 67.513 | 197 | 50 | 3 | 30 | 219 | 53 | 242 | 1.94e-89 | 276 |
| Msa0707510 | AT1G25580.1 | 58.247 | 194 | 65 | 5 | 27 | 218 | 36 | 215 | 9.76e-69 | 227 |
| Msa0707510 | AT5G14490.4 | 53.299 | 197 | 81 | 7 | 25 | 218 | 30 | 218 | 3.26e-58 | 196 |
| Msa0707510 | AT5G14490.2 | 53.299 | 197 | 81 | 7 | 25 | 218 | 30 | 218 | 3.52e-58 | 194 |
| Msa0707510 | AT5G14490.1 | 53.299 | 197 | 81 | 7 | 25 | 218 | 33 | 221 | 3.57e-58 | 196 |
| Msa0707510 | AT5G14490.3 | 53.299 | 197 | 81 | 7 | 25 | 218 | 33 | 221 | 4.79e-58 | 196 |
| Msa0707510 | AT3G01600.1 | 50.510 | 196 | 87 | 5 | 23 | 215 | 28 | 216 | 4.74e-55 | 188 |
| Msa0707510 | AT1G01720.1 | 35.065 | 154 | 71 | 8 | 45 | 195 | 5 | 132 | 5.66e-14 | 72.8 |
| Msa0707510 | AT5G09330.5 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.20e-12 | 70.5 |
| Msa0707510 | AT5G09330.2 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.20e-12 | 70.5 |
| Msa0707510 | AT5G09330.4 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.20e-12 | 70.5 |
| Msa0707510 | AT5G09330.3 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.20e-12 | 70.5 |
| Msa0707510 | AT5G09330.1 | 35.526 | 152 | 70 | 8 | 47 | 194 | 6 | 133 | 1.20e-12 | 70.5 |
| Msa0707510 | AT1G02220.1 | 30.872 | 149 | 76 | 5 | 48 | 193 | 4 | 128 | 3.26e-12 | 68.6 |
| Msa0707510 | AT3G15500.1 | 31.579 | 152 | 78 | 5 | 45 | 194 | 12 | 139 | 3.61e-12 | 67.8 |
| Msa0707510 | AT1G33060.2 | 28.814 | 177 | 92 | 7 | 46 | 213 | 23 | 174 | 4.86e-12 | 68.9 |
| Msa0707510 | AT1G33060.1 | 28.814 | 177 | 92 | 7 | 46 | 213 | 23 | 174 | 5.15e-12 | 68.6 |
| Msa0707510 | AT1G52890.1 | 30.921 | 152 | 79 | 5 | 45 | 194 | 12 | 139 | 1.17e-11 | 66.2 |
| Msa0707510 | AT3G29035.1 | 30.682 | 176 | 88 | 7 | 45 | 211 | 22 | 172 | 2.08e-11 | 65.5 |
| Msa0707510 | AT4G27410.3 | 27.919 | 197 | 95 | 7 | 45 | 218 | 12 | 184 | 2.42e-11 | 65.5 |
| Msa0707510 | AT5G39610.1 | 29.778 | 225 | 118 | 10 | 45 | 260 | 18 | 211 | 2.88e-11 | 64.7 |
Find 134 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCGAAATGATCAGATTTA+AGG | 0.202690 | 4_4:-80825570 | None:intergenic |
| CTTCCATTGATATTATAATT+AGG | 0.223614 | 4_4:-80825418 | None:intergenic |
| GCATTTGTGAAGCTTGTTAA+AGG | 0.254170 | 4_4:-80825532 | None:intergenic |
| AGCTTCTTGTTGGTTTCTAA+TGG | 0.256606 | 4_4:-80828693 | None:intergenic |
| ACCAGACCTGTTATGGTTAA+TGG | 0.262903 | 4_4:+80825148 | Msa0707510:CDS |
| CCTGTTGTATATGCCTTTGA+TGG | 0.263920 | 4_4:-80825037 | None:intergenic |
| GGTTGAAATACTCTTCTTAC+TGG | 0.281746 | 4_4:+80828720 | Msa0707510:CDS |
| TGTTTACCATTAACCATAAC+AGG | 0.301271 | 4_4:-80825154 | None:intergenic |
| CATCAAAACAAGTTCATGAT+TGG | 0.304962 | 4_4:+80829465 | Msa0707510:three_prime_UTR |
| CACCTTAAATCTGATCATTT+CGG | 0.305151 | 4_4:+80825568 | Msa0707510:CDS |
| GATTGGAAGGCCTACTTATA+TGG | 0.307907 | 4_4:-80826547 | None:intergenic |
| TGGTTTGGAGGAAGTCATTA+TGG | 0.313328 | 4_4:+80827944 | Msa0707510:CDS |
| CATCACCCAATTTGTCTTCT+CGG | 0.314134 | 4_4:-80825233 | None:intergenic |
| CAGTAGAAACTTTGAGTCTT+AGG | 0.334208 | 4_4:-80829153 | None:intergenic |
| CACAGCCAAGACAGTGTAAT+TGG | 0.340413 | 4_4:+80825329 | Msa0707510:CDS |
| ATGGTTAATGGTAAACAAAA+AGG | 0.341742 | 4_4:+80825160 | Msa0707510:CDS |
| GTGTGCAACGGAACAAGTTT+TGG | 0.344961 | 4_4:+80828993 | Msa0707510:three_prime_UTR |
| AGGAAGAAACTGTTAGAATA+AGG | 0.352029 | 4_4:-80823745 | None:intergenic |
| TATATGCCTTTGATGGTCTA+TGG | 0.358040 | 4_4:-80825030 | None:intergenic |
| GAAAACCCGAGAAGACAAAT+TGG | 0.361472 | 4_4:+80825227 | Msa0707510:CDS |
| GATGTGTGATGGAGGGGAGC+TGG | 0.370060 | 4_4:-80826590 | None:intergenic |
| TCAACCACTCAGCTTCTTGT+TGG | 0.371776 | 4_4:-80828703 | None:intergenic |
| TGGAAGGTCTGCGTCTGGTT+TGG | 0.383750 | 4_4:+80827929 | Msa0707510:CDS |
| CATGTTCTTTGACTCAACTT+TGG | 0.392039 | 4_4:-80824617 | None:intergenic |
| GGTTTGGAGGAAGTCATTAT+GGG | 0.397618 | 4_4:+80827945 | Msa0707510:CDS |
| TATAATAATGATATTAATGT+AGG | 0.399708 | 4_4:-80829189 | None:intergenic |
| TCCACAGCGAGGGCAGTGTT+TGG | 0.404918 | 4_4:-80824258 | None:intergenic |
| TCAATCAATTCTTGATCTGT+TGG | 0.405063 | 4_4:-80824583 | None:intergenic |
| GGGAGCTGGAGAGATGATAG+TGG | 0.405439 | 4_4:-80826576 | None:intergenic |
| TGGTAAGACCAGACCTGTTA+TGG | 0.407089 | 4_4:+80825141 | Msa0707510:CDS |
| GTGAAGCTTGTTAAAGGACT+AGG | 0.412943 | 4_4:-80825526 | None:intergenic |
| TTAAAGTAGAGAGCAAATTC+TGG | 0.413171 | 4_4:+80823665 | Msa0707510:five_prime_UTR |
| ATCACCCAATTTGTCTTCTC+GGG | 0.413577 | 4_4:-80825232 | None:intergenic |
| CTTCTTCATGTTGTCCAAGA+TGG | 0.416813 | 4_4:-80825264 | None:intergenic |
| TGGAGAGATGATAGTGGAGA+TGG | 0.419657 | 4_4:-80826570 | None:intergenic |
| GGAAGAAGAGATAGTGGAAG+TGG | 0.419947 | 4_4:+80825436 | Msa0707510:CDS |
| AATCTGAGTAACAATTTCCT+TGG | 0.423878 | 4_4:-80825470 | None:intergenic |
| GAATTCATTCTCACTATTGA+AGG | 0.424881 | 4_4:+80824664 | Msa0707510:CDS |
| GATGGATATGATGATTACTT+TGG | 0.425161 | 4_4:-80828887 | None:intergenic |
| ATCAATGGAAGAAGAGATAG+TGG | 0.430228 | 4_4:+80825430 | Msa0707510:CDS |
| TCCTTGTAAGTCACACTCTT+CGG | 0.430646 | 4_4:-80825086 | None:intergenic |
| GAAACAAGATGGCACAAAAC+TGG | 0.433929 | 4_4:+80825121 | Msa0707510:CDS |
| AACAAGCTTCACAAATGCCT+TGG | 0.435738 | 4_4:+80825537 | Msa0707510:CDS |
| GATAGAAAGAAAGAAATAGA+AGG | 0.438700 | 4_4:-80823776 | None:intergenic |
| GATGATAGTGGAGATGGGAT+TGG | 0.442110 | 4_4:-80826564 | None:intergenic |
| ATCAGGAGGCTCATGTGATC+AGG | 0.445075 | 4_4:+80826388 | Msa0707510:CDS |
| CCATCAAAGGCATATACAAC+AGG | 0.455100 | 4_4:+80825037 | Msa0707510:CDS |
| ACCATTAACCATAACAGGTC+TGG | 0.456313 | 4_4:-80825149 | None:intergenic |
| CTATCATTATAGGTTGGAAT+AGG | 0.457175 | 4_4:+80826335 | Msa0707510:intron |
| TACAATATGCACAAACTCAA+TGG | 0.460608 | 4_4:-80829351 | None:intergenic |
| GAACCTAATTATAATATCAA+TGG | 0.462340 | 4_4:+80825415 | Msa0707510:CDS |
| AATAAATATAAATAATATGA+TGG | 0.464405 | 4_4:-80829232 | None:intergenic |
| GGATCAAATTTCACTCCTGC+TGG | 0.469166 | 4_4:-80824562 | None:intergenic |
| CATCATCATGATTAGAATGA+AGG | 0.470307 | 4_4:+80828770 | Msa0707510:exon |
| CCCTCGTGACATCAAGTTGA+GGG | 0.476486 | 4_4:+80829123 | Msa0707510:three_prime_UTR |
| TCAGACCAATTACACTGTCT+TGG | 0.476749 | 4_4:-80825334 | None:intergenic |
| GATGAAATGTCTGCTGTTGT+TGG | 0.479390 | 4_4:+80825499 | Msa0707510:CDS |
| CTCACTATTGAAGGAGAAGA+TGG | 0.486078 | 4_4:+80824673 | Msa0707510:CDS |
| AAGGTCTGCGTCTGGTTTGG+AGG | 0.488566 | 4_4:+80827932 | Msa0707510:CDS |
| CTGCGTTTGCACTAATCTGC+TGG | 0.490246 | 4_4:-80826520 | None:intergenic |
| ACAAGAGAAATGCAAGCATC+AGG | 0.490268 | 4_4:+80826371 | Msa0707510:CDS |
| TGATGGTGGATGTGTGATGG+AGG | 0.493985 | 4_4:-80826598 | None:intergenic |
| AACTAAGGTGGCTTTAAAGA+AGG | 0.494819 | 4_4:-80823697 | None:intergenic |
| CTTGTTCTCTACACCAACTT+CGG | 0.499621 | 4_4:+80825196 | Msa0707510:CDS |
| GGAGAGATGATAGTGGAGAT+GGG | 0.502154 | 4_4:-80826569 | None:intergenic |
| CTAATATATCAATCTCTTGA+GGG | 0.504687 | 4_4:+80824053 | Msa0707510:five_prime_UTR |
| AGTGTTTGGATCCACACAAC+TGG | 0.507034 | 4_4:-80824244 | None:intergenic |
| CATTCTAATCATGATGATGA+TGG | 0.514227 | 4_4:-80828766 | None:intergenic |
| TGAAGCTTGTTAAAGGACTA+GGG | 0.515511 | 4_4:-80825525 | None:intergenic |
| AGGCACCGAAGTTCATAAAC+CGG | 0.516038 | 4_4:-80828942 | None:intergenic |
| GATGGTGGATGTGTGATGGA+GGG | 0.519141 | 4_4:-80826597 | None:intergenic |
| ATAATAATGATATTAATGTA+GGG | 0.525986 | 4_4:-80829188 | None:intergenic |
| GGTGGTGGAAGGTCTGCGTC+TGG | 0.526615 | 4_4:+80827924 | Msa0707510:CDS |
| TGTGACTTACAAGGAAGTAC+AGG | 0.531187 | 4_4:+80825094 | Msa0707510:CDS |
| GTGATTATGCTAAGTGGTGT+TGG | 0.531304 | 4_4:+80824075 | Msa0707510:five_prime_UTR |
| AGAATGAATTCATCAATCAA+AGG | 0.532417 | 4_4:-80824652 | None:intergenic |
| CTCTCTACTTTAACTGACTG+AGG | 0.532592 | 4_4:-80823655 | None:intergenic |
| AAAACCCGAGAAGACAAATT+GGG | 0.533154 | 4_4:+80825228 | Msa0707510:CDS |
| CATGGTAAGAATTGTCATCA+AGG | 0.534349 | 4_4:-80826622 | None:intergenic |
| GTGATGCATCAATACCATCT+TGG | 0.536833 | 4_4:+80825250 | Msa0707510:CDS |
| TTGGAAAGTGAGTTGAGGTA+TGG | 0.540037 | 4_4:-80828858 | None:intergenic |
| TTTAAGGTGTTGAATATCCA+AGG | 0.540367 | 4_4:-80825554 | None:intergenic |
| CAGCAACAACATCATAAACT+AGG | 0.542717 | 4_4:+80827903 | Msa0707510:CDS |
| AAGTGGAAGTTCTTCTTCCA+AGG | 0.544042 | 4_4:+80825453 | Msa0707510:CDS |
| TCTAATATATCAATCTCTTG+AGG | 0.544719 | 4_4:+80824052 | Msa0707510:five_prime_UTR |
| ACAACAACTGGTGAAGGAAG+TGG | 0.551888 | 4_4:+80825388 | Msa0707510:CDS |
| CAACATGAAGAAGAGAAAGA+AGG | 0.555164 | 4_4:+80825274 | Msa0707510:CDS |
| AGAATTGTCATCAAGGATGA+TGG | 0.555788 | 4_4:-80826615 | None:intergenic |
| GAATGAATTCATCAATCAAA+GGG | 0.558039 | 4_4:-80824651 | None:intergenic |
| GGATGATGGTGGATGTGTGA+TGG | 0.559886 | 4_4:-80826601 | None:intergenic |
| ACGCAGCTTTCCATATAAGT+AGG | 0.560422 | 4_4:+80826537 | Msa0707510:CDS |
| TGTGGACACAAATTTGATCA+AGG | 0.561466 | 4_4:+80824275 | Msa0707510:CDS |
| TTATAGGTTGGAATAGGAGA+AGG | 0.569160 | 4_4:+80826341 | Msa0707510:intron |
| CAACATCATAAACTAGGTGG+TGG | 0.571157 | 4_4:+80827909 | Msa0707510:CDS |
| AGATAGATAGATATAAACTA+AGG | 0.572710 | 4_4:-80823712 | None:intergenic |
| ACCGAAGAGTGTGACTTACA+AGG | 0.573730 | 4_4:+80825085 | Msa0707510:CDS |
| ATGGTGGATGTGTGATGGAG+GGG | 0.573744 | 4_4:-80826596 | None:intergenic |
| TGATCTCATAGATTCTAAGC+TGG | 0.574339 | 4_4:+80824214 | Msa0707510:CDS |
| AAACTGTTAGAATAAGGTTG+AGG | 0.575223 | 4_4:-80823739 | None:intergenic |
| CAAATTTGTGTCCACAGCGA+GGG | 0.577429 | 4_4:-80824268 | None:intergenic |
| TCCCTCGTGACATCAAGTTG+AGG | 0.584358 | 4_4:+80829122 | Msa0707510:three_prime_UTR |
| CAAATTTGATCAAGGCAAGC+CGG | 0.585518 | 4_4:+80824283 | Msa0707510:CDS |
| CTGTTAGAATAAGGTTGAGG+TGG | 0.589168 | 4_4:-80823736 | None:intergenic |
| ATCATAAACTAGGTGGTGGA+AGG | 0.591383 | 4_4:+80827913 | Msa0707510:CDS |
| TCCAAACACTGCCCTCGCTG+TGG | 0.598125 | 4_4:+80824257 | Msa0707510:CDS |
| CTGGAAGAGCACCAGTTGTG+TGG | 0.599801 | 4_4:+80824233 | Msa0707510:CDS |
| ATACAACAGGAACACGAAAG+AGG | 0.605890 | 4_4:+80825050 | Msa0707510:CDS |
| TACTTTAACTGACTGAGGCA+AGG | 0.609591 | 4_4:-80823650 | None:intergenic |
| GTTTGGAGGAAGTCATTATG+GGG | 0.614581 | 4_4:+80827946 | Msa0707510:CDS |
| TGGAACTAACAGGATTGGCT+AGG | 0.614683 | 4_4:+80824535 | Msa0707510:intron |
| ATAGTGGAGATGGGATTGGA+AGG | 0.617201 | 4_4:-80826560 | None:intergenic |
| TCCCTCAACTTGATGTCACG+AGG | 0.618575 | 4_4:-80829124 | None:intergenic |
| TTGTTGTCATGAGGGTCGAC+TGG | 0.619843 | 4_4:-80828743 | None:intergenic |
| ACAACAACAACAACTGGTGA+AGG | 0.627737 | 4_4:+80825382 | Msa0707510:CDS |
| TTGAGGGTGATTATGCTAAG+TGG | 0.628559 | 4_4:+80824069 | Msa0707510:five_prime_UTR |
| TAGATAGATATAAACTAAGG+TGG | 0.629951 | 4_4:-80823709 | None:intergenic |
| TCAAATTTGTGTCCACAGCG+AGG | 0.631442 | 4_4:-80824269 | None:intergenic |
| GATTGGCTAGGTCTACCAGC+AGG | 0.635385 | 4_4:+80824547 | Msa0707510:CDS |
| TGATGATGGTTGTTGTCATG+AGG | 0.638720 | 4_4:-80828752 | None:intergenic |
| AGGAGGCTCATGTGATCAGG+AGG | 0.640907 | 4_4:+80826391 | Msa0707510:CDS |
| TTATTAATATAATACTAACA+AGG | 0.644453 | 4_4:-80824140 | None:intergenic |
| GATGATGGTTGTTGTCATGA+GGG | 0.647114 | 4_4:-80828751 | None:intergenic |
| CCCTCAACTTGATGTCACGA+GGG | 0.649331 | 4_4:-80829123 | None:intergenic |
| AGAGAAATGCAAGCATCAGG+AGG | 0.653970 | 4_4:+80826374 | Msa0707510:CDS |
| GAAACACTAACTGTGTGCAA+CGG | 0.654931 | 4_4:+80828981 | Msa0707510:three_prime_UTR |
| GTACAGGAGGAGAAACAAGA+TGG | 0.661050 | 4_4:+80825110 | Msa0707510:CDS |
| ACAACTGGTGAAGGAAGTGG+TGG | 0.665064 | 4_4:+80825391 | Msa0707510:CDS |
| GACTTACAAGGAAGTACAGG+AGG | 0.666650 | 4_4:+80825097 | Msa0707510:CDS |
| ATTGTCATCAAGGATGATGG+TGG | 0.672021 | 4_4:-80826612 | None:intergenic |
| AAAAGTGACAAAGAACAAAG+GGG | 0.680561 | 4_4:+80829019 | Msa0707510:three_prime_UTR |
| AACGTCGTCTGATATCAAAG+AGG | 0.681906 | 4_4:+80827977 | Msa0707510:CDS |
| GAAACCAACAAGAAGCTGAG+TGG | 0.685593 | 4_4:+80828699 | Msa0707510:CDS |
| GGAGCATGATTGTTGAAACA+TGG | 0.690838 | 4_4:-80826640 | None:intergenic |
| CAACAACATCATAAACTAGG+TGG | 0.704443 | 4_4:+80827906 | Msa0707510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAATAAAAAATTAAGAAAAT+TGG | - | chr4_4:80823999-80824018 | None:intergenic | 10.0% |
| !!! | CAATTTTCTTAATTTTTTAT+TGG | + | chr4_4:80823997-80824016 | Msa0707510:intron | 10.0% |
| !! | TTATTAATATAATACTAACA+AGG | - | chr4_4:80824143-80824162 | None:intergenic | 10.0% |
| !! | AAAAATAAAAAGCAATTAAA+GGG | - | chr4_4:80824501-80824520 | None:intergenic | 10.0% |
| !! | TAAAAATAAAAAGCAATTAA+AGG | - | chr4_4:80824502-80824521 | None:intergenic | 10.0% |
| !!! | ATTTTTAATTTGAATTTCAA+TGG | + | chr4_4:80824515-80824534 | Msa0707510:intron | 10.0% |
| !! | AATTAATTAATTAATTAACC+TGG | - | chr4_4:80824727-80824746 | None:intergenic | 10.0% |
| !!! | AAAAAAATTATCTCTAATTT+TGG | - | chr4_4:80825868-80825887 | None:intergenic | 10.0% |
| !! | ACTAGTAAATTAAATAAAAT+CGG | - | chr4_4:80827184-80827203 | None:intergenic | 10.0% |
| !! | AAAAAGAAAAGAAAAAAAAA+AGG | + | chr4_4:80829066-80829085 | Msa0707510:three_prime_UTR | 10.0% |
| !! | ATAATAATGATATTAATGTA+GGG | - | chr4_4:80829191-80829210 | None:intergenic | 10.0% |
| !! | TATAATAATGATATTAATGT+AGG | - | chr4_4:80829192-80829211 | None:intergenic | 10.0% |
| !! | ATCATGTAGAAATTAAAATT+TGG | - | chr4_4:80823945-80823964 | None:intergenic | 15.0% |
| !!! | TAATTTTTTATTGGTTTTGT+AGG | + | chr4_4:80824006-80824025 | Msa0707510:intron | 15.0% |
| !! | ATTAATTTAAATTCTCAGTT+AGG | + | chr4_4:80824800-80824819 | Msa0707510:intron | 15.0% |
| !! | ATAATTTGAAAAAATGAAAG+TGG | - | chr4_4:80825729-80825748 | None:intergenic | 15.0% |
| !!! | TTTCCTCTAATATTTTTTAT+TGG | + | chr4_4:80825885-80825904 | Msa0707510:intron | 15.0% |
| !! | TTACCAATAAAAAATATTAG+AGG | - | chr4_4:80825891-80825910 | None:intergenic | 15.0% |
| !! | TTATATGAAATTTCAACATT+CGG | + | chr4_4:80826029-80826048 | Msa0707510:intron | 15.0% |
| !! | ATATTTGATACTATCATTAT+AGG | + | chr4_4:80826325-80826344 | Msa0707510:intron | 15.0% |
| !!! | AATAATTTTCAATTTTGTCT+TGG | + | chr4_4:80826916-80826935 | Msa0707510:intron | 15.0% |
| !! | CTAGTAAATTAAATAAAATC+GGG | - | chr4_4:80827183-80827202 | None:intergenic | 15.0% |
| !! | AAAAAAAAATAGTGTTTGTT+CGG | + | chr4_4:80827522-80827541 | Msa0707510:intron | 15.0% |
| !!! | TAAATTCATTGATTTATACT+AGG | + | chr4_4:80827718-80827737 | Msa0707510:intron | 15.0% |
| !! | AGTCTTTAGTTATAAAAAAT+AGG | - | chr4_4:80828126-80828145 | None:intergenic | 15.0% |
| !! | AGATAGATAGATATAAACTA+AGG | - | chr4_4:80823715-80823734 | None:intergenic | 20.0% |
| !! | AGAAATAGAAGGAAAAAAAA+AGG | - | chr4_4:80823768-80823787 | None:intergenic | 20.0% |
| !! | GAACCTAATTATAATATCAA+TGG | + | chr4_4:80825415-80825434 | Msa0707510:CDS | 20.0% |
| !! | CTTCCATTGATATTATAATT+AGG | - | chr4_4:80825421-80825440 | None:intergenic | 20.0% |
| !! | AACTTTAATAATTTGACTCA+CGG | - | chr4_4:80827019-80827038 | None:intergenic | 20.0% |
| !!! | TAGATTTTTAAAAGAGAATG+AGG | + | chr4_4:80827090-80827109 | Msa0707510:intron | 20.0% |
| !!! | AAACTTTTATTTTGCCAAAT+AGG | - | chr4_4:80827121-80827140 | None:intergenic | 20.0% |
| !! | TAGTTCTCTTAAGTTAATAA+AGG | - | chr4_4:80827292-80827311 | None:intergenic | 20.0% |
| !!! | TTGTGAATTTTAACAAATCA+TGG | - | chr4_4:80827373-80827392 | None:intergenic | 20.0% |
| !!! | GATTAGTTTTTTTTTGACTT+TGG | + | chr4_4:80827445-80827464 | Msa0707510:intron | 20.0% |
| !! | AATAAAGATGAAGATGAAAA+TGG | - | chr4_4:80828154-80828173 | None:intergenic | 20.0% |
| !! | GAAAAAAAAGAAGATGAATA+TGG | - | chr4_4:80828244-80828263 | None:intergenic | 20.0% |
| !! | CATGAAAAGAAGATTAATTA+GGG | - | chr4_4:80828641-80828660 | None:intergenic | 20.0% |
| !! | TCATGAAAAGAAGATTAATT+AGG | - | chr4_4:80828642-80828661 | None:intergenic | 20.0% |
| !!! | ATGTTGTCTTTTGTTTATTT+GGG | - | chr4_4:80828812-80828831 | None:intergenic | 20.0% |
| !! | AAAAAGAGCAAAAATAACTA+AGG | - | chr4_4:80828912-80828931 | None:intergenic | 20.0% |
| ! | TAGATAGATATAAACTAAGG+TGG | - | chr4_4:80823712-80823731 | None:intergenic | 25.0% |
| ! | GATAGAAAGAAAGAAATAGA+AGG | - | chr4_4:80823779-80823798 | None:intergenic | 25.0% |
| ! | GACTGAGAATATAAAAGAAA+TGG | - | chr4_4:80823866-80823885 | None:intergenic | 25.0% |
| ! | TCTAATATATCAATCTCTTG+AGG | + | chr4_4:80824052-80824071 | Msa0707510:five_prime_UTR | 25.0% |
| ! | CTAATATATCAATCTCTTGA+GGG | + | chr4_4:80824053-80824072 | Msa0707510:five_prime_UTR | 25.0% |
| !!! | TTATGTCACCATAGTTTTAA+AGG | - | chr4_4:80824345-80824364 | None:intergenic | 25.0% |
| ! | ACTATGGTGACATAATTTAA+TGG | + | chr4_4:80824350-80824369 | Msa0707510:intron | 25.0% |
| !! | TATAATCCCTTTTCTCATTT+AGG | + | chr4_4:80824377-80824396 | Msa0707510:intron | 25.0% |
| ! | GAATGAATTCATCAATCAAA+GGG | - | chr4_4:80824654-80824673 | None:intergenic | 25.0% |
| ! | AGAATGAATTCATCAATCAA+AGG | - | chr4_4:80824655-80824674 | None:intergenic | 25.0% |
| ! | ATGGTTAATGGTAAACAAAA+AGG | + | chr4_4:80825160-80825179 | Msa0707510:CDS | 25.0% |
| ! | TTGAATGTAACTATGTATGT+CGG | - | chr4_4:80825706-80825725 | None:intergenic | 25.0% |
| ! | TCAAACACTTACAAATACTT+TGG | - | chr4_4:80825780-80825799 | None:intergenic | 25.0% |
| ! | ACATGAAATGAGTTTAATGA+AGG | - | chr4_4:80825813-80825832 | None:intergenic | 25.0% |
| ! | AATATAGCATAGCATTTGAT+TGG | + | chr4_4:80825925-80825944 | Msa0707510:intron | 25.0% |
| ! | AAAGAACATGCATGAAATTA+AGG | + | chr4_4:80826084-80826103 | Msa0707510:intron | 25.0% |
| ! | AAGAACATGCATGAAATTAA+GGG | + | chr4_4:80826085-80826104 | Msa0707510:intron | 25.0% |
| !! | GTCCATACAAATTAATTTTG+CGG | - | chr4_4:80826166-80826185 | None:intergenic | 25.0% |
| !! | AACATTTTCTTTTCTTAGCT+AGG | - | chr4_4:80826244-80826263 | None:intergenic | 25.0% |
| ! | TTGATACTATCATTATAGGT+TGG | + | chr4_4:80826329-80826348 | Msa0707510:intron | 25.0% |
| !! | CCTGAAAATTTTCATTTTGT+TGG | - | chr4_4:80826664-80826683 | None:intergenic | 25.0% |
| !! | CCAACAAAATGAAAATTTTC+AGG | + | chr4_4:80826661-80826680 | Msa0707510:CDS | 25.0% |
| ! | TAAAAGTTCTATCACGATTT+AGG | - | chr4_4:80827266-80827285 | None:intergenic | 25.0% |
| !! | ATAACAAGATTTTACTGGAA+AGG | - | chr4_4:80827396-80827415 | None:intergenic | 25.0% |
| !! | ACAAGATAACAAGATTTTAC+TGG | - | chr4_4:80827401-80827420 | None:intergenic | 25.0% |
| !!! | TTAACTTGGTGCAAATTAAT+GGG | + | chr4_4:80827639-80827658 | Msa0707510:intron | 25.0% |
| ! | TCAATATGTTGAACCAAAAT+GGG | + | chr4_4:80827666-80827685 | Msa0707510:intron | 25.0% |
| !!! | TCATTGATTTATACTAGGAA+AGG | + | chr4_4:80827723-80827742 | Msa0707510:intron | 25.0% |
| !!! | TAGGAAAGGTTTTATATATG+TGG | + | chr4_4:80827737-80827756 | Msa0707510:intron | 25.0% |
| ! | ATGTATAATATGTATCCACA+TGG | + | chr4_4:80827868-80827887 | Msa0707510:intron | 25.0% |
| !!! | CATTTTAAAGATCTAAAGAG+AGG | - | chr4_4:80828266-80828285 | None:intergenic | 25.0% |
| !!! | ATTTTTTACAAACAAGACCA+AGG | - | chr4_4:80828483-80828502 | None:intergenic | 25.0% |
| !!! | GATGTTGTCTTTTGTTTATT+TGG | - | chr4_4:80828813-80828832 | None:intergenic | 25.0% |
| ! | AAAAAAGTGACAAAGAACAA+AGG | + | chr4_4:80829017-80829036 | Msa0707510:three_prime_UTR | 25.0% |
| ! | AAAAAGTGACAAAGAACAAA+GGG | + | chr4_4:80829018-80829037 | Msa0707510:three_prime_UTR | 25.0% |
| ! | AAAAATATCTCAATATCGCT+TGG | - | chr4_4:80829503-80829522 | None:intergenic | 25.0% |
| CAGTGAGAGAAGAAAAATAA+AGG | - | chr4_4:80823630-80823649 | None:intergenic | 30.0% | |
| TTAAAGTAGAGAGCAAATTC+TGG | + | chr4_4:80823665-80823684 | Msa0707510:five_prime_UTR | 30.0% | |
| AAACTGTTAGAATAAGGTTG+AGG | - | chr4_4:80823742-80823761 | None:intergenic | 30.0% | |
| AGGAAGAAACTGTTAGAATA+AGG | - | chr4_4:80823748-80823767 | None:intergenic | 30.0% | |
| TAGCTACCTAAATGAGAAAA+GGG | - | chr4_4:80824386-80824405 | None:intergenic | 30.0% | |
| ATAGCTACCTAAATGAGAAA+AGG | - | chr4_4:80824387-80824406 | None:intergenic | 30.0% | |
| TAAAGGGAGAGAAATCAATA+AGG | - | chr4_4:80824485-80824504 | None:intergenic | 30.0% | |
| TGAATTTCAATGGAACTAAC+AGG | + | chr4_4:80824525-80824544 | Msa0707510:intron | 30.0% | |
| TCAATCAATTCTTGATCTGT+TGG | - | chr4_4:80824586-80824605 | None:intergenic | 30.0% | |
| GAATTCATTCTCACTATTGA+AGG | + | chr4_4:80824664-80824683 | Msa0707510:CDS | 30.0% | |
| ! | AATTAACCTGGAAGTTTTTC+AGG | - | chr4_4:80824715-80824734 | None:intergenic | 30.0% |
| AAGAAATAAACTTGAGCAAG+AGG | + | chr4_4:80824903-80824922 | Msa0707510:intron | 30.0% | |
| AGAAATAAACTTGAGCAAGA+GGG | + | chr4_4:80824904-80824923 | Msa0707510:intron | 30.0% | |
| CAAAGTTAGGTGACTTAATT+AGG | - | chr4_4:80824955-80824974 | None:intergenic | 30.0% | |
| !! | AAGTCACCTAACTTTGATTT+TGG | + | chr4_4:80824959-80824978 | Msa0707510:intron | 30.0% |
| TCATTGCCAAAATCAAAGTT+AGG | - | chr4_4:80824968-80824987 | None:intergenic | 30.0% | |
| !! | GATTTTGGCAATGAATTTTC+AGG | + | chr4_4:80824974-80824993 | Msa0707510:intron | 30.0% |
| TGTTTACCATTAACCATAAC+AGG | - | chr4_4:80825157-80825176 | None:intergenic | 30.0% | |
| AATCTGAGTAACAATTTCCT+TGG | - | chr4_4:80825473-80825492 | None:intergenic | 30.0% | |
| !! | TTTAAGGTGTTGAATATCCA+AGG | - | chr4_4:80825557-80825576 | None:intergenic | 30.0% |
| CACCTTAAATCTGATCATTT+CGG | + | chr4_4:80825568-80825587 | Msa0707510:CDS | 30.0% | |
| !!! | CATCATAGCTTTTTCGAAAT+GGG | - | chr4_4:80825600-80825619 | None:intergenic | 30.0% |
| !!! | TCATCATAGCTTTTTCGAAA+TGG | - | chr4_4:80825601-80825620 | None:intergenic | 30.0% |
| ATTTCGAAAAAGCTATGATG+AGG | + | chr4_4:80825600-80825619 | Msa0707510:CDS | 30.0% | |
| ATGAAATTTCAACATTCGGT+TGG | + | chr4_4:80826033-80826052 | Msa0707510:intron | 30.0% | |
| ATGCATGAAATTAAGGGTTA+AGG | + | chr4_4:80826091-80826110 | Msa0707510:intron | 30.0% | |
| !! | CACCGCAAAATTAATTTGTA+TGG | + | chr4_4:80826161-80826180 | Msa0707510:intron | 30.0% |
| ! | TTTTCTTTTCTTAGCTAGGT+GGG | - | chr4_4:80826240-80826259 | None:intergenic | 30.0% |
| ! | ATTTTCTTTTCTTAGCTAGG+TGG | - | chr4_4:80826241-80826260 | None:intergenic | 30.0% |
| ! | CTATCATTATAGGTTGGAAT+AGG | + | chr4_4:80826335-80826354 | Msa0707510:intron | 30.0% |
| ! | ACTCATCGTTAAACTTTTTG+AGG | + | chr4_4:80826885-80826904 | Msa0707510:intron | 30.0% |
| ! | AATCTTGTTATCTTGTCCTT+AGG | + | chr4_4:80827405-80827424 | Msa0707510:intron | 30.0% |
| !!! | TAGATTTTAACTTGTGCCTA+AGG | - | chr4_4:80827424-80827443 | None:intergenic | 30.0% |
| TTTACTCAACCAAATACATG+TGG | + | chr4_4:80827596-80827615 | Msa0707510:intron | 30.0% | |
| !! | CTTAACTTGGTGCAAATTAA+TGG | + | chr4_4:80827638-80827657 | Msa0707510:intron | 30.0% |
| !!! | TTTTGGTTCAACATATTGAG+TGG | - | chr4_4:80827665-80827684 | None:intergenic | 30.0% |
| CTCAATATGTTGAACCAAAA+TGG | + | chr4_4:80827665-80827684 | Msa0707510:intron | 30.0% | |
| CAATATGTTGAACCAAAATG+GGG | + | chr4_4:80827667-80827686 | Msa0707510:intron | 30.0% | |
| !! | ACAGTTTCATGCTTGTTATT+TGG | - | chr4_4:80827766-80827785 | None:intergenic | 30.0% |
| ! | TTAGCTATTTCACACAAGAA+AGG | + | chr4_4:80828400-80828419 | Msa0707510:intron | 30.0% |
| !! | TCATGTATTTTTGCATTCCT+TGG | + | chr4_4:80828463-80828482 | Msa0707510:intron | 30.0% |
| GATATTCATTTCAAACTCTG+AGG | - | chr4_4:80828588-80828607 | None:intergenic | 30.0% | |
| ! | CATTCTAATCATGATGATGA+TGG | - | chr4_4:80828769-80828788 | None:intergenic | 30.0% |
| CATCATCATGATTAGAATGA+AGG | + | chr4_4:80828770-80828789 | Msa0707510:exon | 30.0% | |
| !!! | ATGATTACTTTGGCTTTTGT+TGG | - | chr4_4:80828880-80828899 | None:intergenic | 30.0% |
| GATGGATATGATGATTACTT+TGG | - | chr4_4:80828890-80828909 | None:intergenic | 30.0% | |
| AGAGCAAAAATAACTAAGGA+TGG | - | chr4_4:80828908-80828927 | None:intergenic | 30.0% | |
| !!! | GCTCTTTTTTCTTTCTTTTC+CGG | + | chr4_4:80828923-80828942 | Msa0707510:three_prime_UTR | 30.0% |
| TTTCCAATGAGAAAAATGAG+AGG | - | chr4_4:80828965-80828984 | None:intergenic | 30.0% | |
| AAAAGTGACAAAGAACAAAG+GGG | + | chr4_4:80829019-80829038 | Msa0707510:three_prime_UTR | 30.0% | |
| TACAATATGCACAAACTCAA+TGG | - | chr4_4:80829354-80829373 | None:intergenic | 30.0% | |
| CATCAAAACAAGTTCATGAT+TGG | + | chr4_4:80829465-80829484 | Msa0707510:three_prime_UTR | 30.0% | |
| !! | AACTAAGGTGGCTTTAAAGA+AGG | - | chr4_4:80823700-80823719 | None:intergenic | 35.0% |
| CTAGTATGCAGTTACTTACA+AGG | - | chr4_4:80823807-80823826 | None:intergenic | 35.0% | |
| TGATCTCATAGATTCTAAGC+TGG | + | chr4_4:80824214-80824233 | Msa0707510:CDS | 35.0% | |
| TGTGGACACAAATTTGATCA+AGG | + | chr4_4:80824275-80824294 | Msa0707510:CDS | 35.0% | |
| TTCAATGGAACTAACAGGAT+TGG | + | chr4_4:80824530-80824549 | Msa0707510:intron | 35.0% | |
| CATGTTCTTTGACTCAACTT+TGG | - | chr4_4:80824620-80824639 | None:intergenic | 35.0% | |
| ! | CTTTTTCCATAGACCATCAA+AGG | + | chr4_4:80825024-80825043 | Msa0707510:CDS | 35.0% |
| ! | TATATGCCTTTGATGGTCTA+TGG | - | chr4_4:80825033-80825052 | None:intergenic | 35.0% |
| AAAACCCGAGAAGACAAATT+GGG | + | chr4_4:80825228-80825247 | Msa0707510:CDS | 35.0% | |
| CAACATGAAGAAGAGAAAGA+AGG | + | chr4_4:80825274-80825293 | Msa0707510:CDS | 35.0% | |
| ATCAATGGAAGAAGAGATAG+TGG | + | chr4_4:80825430-80825449 | Msa0707510:CDS | 35.0% | |
| !! | TGAAGCTTGTTAAAGGACTA+GGG | - | chr4_4:80825528-80825547 | None:intergenic | 35.0% |
| !! | GCATTTGTGAAGCTTGTTAA+AGG | - | chr4_4:80825535-80825554 | None:intergenic | 35.0% |
| AGCCGAAATGATCAGATTTA+AGG | - | chr4_4:80825573-80825592 | None:intergenic | 35.0% | |
| CATAGCATTTGATTGGAACA+TGG | + | chr4_4:80825932-80825951 | Msa0707510:intron | 35.0% | |
| !! | ACTGACACTGATTTATCATC+TGG | - | chr4_4:80826193-80826212 | None:intergenic | 35.0% |
| ! | TTATAGGTTGGAATAGGAGA+AGG | + | chr4_4:80826341-80826360 | Msa0707510:intron | 35.0% |
| AGAATTGTCATCAAGGATGA+TGG | - | chr4_4:80826618-80826637 | None:intergenic | 35.0% | |
| CATGGTAAGAATTGTCATCA+AGG | - | chr4_4:80826625-80826644 | None:intergenic | 35.0% | |
| TCGCTAGGAAAAAACTATAG+CGG | + | chr4_4:80826817-80826836 | Msa0707510:intron | 35.0% | |
| ! | ACTCACGGTTAAACATTTTG+AGG | - | chr4_4:80827004-80827023 | None:intergenic | 35.0% |
| AGAATGAGGTAACACCTATT+TGG | + | chr4_4:80827104-80827123 | Msa0707510:intron | 35.0% | |
| TATCGTCATCGTTGATATTG+TGG | + | chr4_4:80827209-80827228 | Msa0707510:intron | 35.0% | |
| GTCTCACATCAAGTATATTG+AGG | - | chr4_4:80827244-80827263 | None:intergenic | 35.0% | |
| TCTCACTTTCCACATGTATT+TGG | - | chr4_4:80827608-80827627 | None:intergenic | 35.0% | |
| AGAAAAGAGGTCTCTTAACT+TGG | + | chr4_4:80827625-80827644 | Msa0707510:intron | 35.0% | |
| TGATTGTCAATTGTCATCGA+TGG | + | chr4_4:80827798-80827817 | Msa0707510:intron | 35.0% | |
| CAGCAACAACATCATAAACT+AGG | + | chr4_4:80827903-80827922 | Msa0707510:CDS | 35.0% | |
| CAACAACATCATAAACTAGG+TGG | + | chr4_4:80827906-80827925 | Msa0707510:CDS | 35.0% | |
| TTCTCATAATAATGCCCACT+AGG | + | chr4_4:80828050-80828069 | Msa0707510:intron | 35.0% | |
| TCTCATAATAATGCCCACTA+GGG | + | chr4_4:80828051-80828070 | Msa0707510:intron | 35.0% | |
| ! | ACTATGATGACGTGGAAAAA+AGG | + | chr4_4:80828521-80828540 | Msa0707510:intron | 35.0% |
| ACAATGCAATGGAAATTGAC+TGG | - | chr4_4:80828548-80828567 | None:intergenic | 35.0% | |
| GTACACAGAAAACAATGCAA+TGG | - | chr4_4:80828559-80828578 | None:intergenic | 35.0% | |
| ATCTTCATTACACTTCTCAC+AGG | + | chr4_4:80828664-80828683 | Msa0707510:intron | 35.0% | |
| !! | AGCTTCTTGTTGGTTTCTAA+TGG | - | chr4_4:80828696-80828715 | None:intergenic | 35.0% |
| GGTTGAAATACTCTTCTTAC+TGG | + | chr4_4:80828720-80828739 | Msa0707510:CDS | 35.0% | |
| ! | TTTTGTTGGAAAGTGAGTTG+AGG | - | chr4_4:80828866-80828885 | None:intergenic | 35.0% |
| ! | CTTTTCCGGTTTATGAACTT+CGG | + | chr4_4:80828937-80828956 | Msa0707510:three_prime_UTR | 35.0% |
| CAGTAGAAACTTTGAGTCTT+AGG | - | chr4_4:80829156-80829175 | None:intergenic | 35.0% | |
| TACTTTAACTGACTGAGGCA+AGG | - | chr4_4:80823653-80823672 | None:intergenic | 40.0% | |
| CTCTCTACTTTAACTGACTG+AGG | - | chr4_4:80823658-80823677 | None:intergenic | 40.0% | |
| CTGTTAGAATAAGGTTGAGG+TGG | - | chr4_4:80823739-80823758 | None:intergenic | 40.0% | |
| ACAATGAACTGTGCAGGATA+AGG | - | chr4_4:80823837-80823856 | None:intergenic | 40.0% | |
| ATCCTGCACAGTTCATTGTA+TGG | + | chr4_4:80823838-80823857 | Msa0707510:intron | 40.0% | |
| ATCCATACAATGAACTGTGC+AGG | - | chr4_4:80823843-80823862 | None:intergenic | 40.0% | |
| TTGAGGGTGATTATGCTAAG+TGG | + | chr4_4:80824069-80824088 | Msa0707510:five_prime_UTR | 40.0% | |
| GTGATTATGCTAAGTGGTGT+TGG | + | chr4_4:80824075-80824094 | Msa0707510:five_prime_UTR | 40.0% | |
| CAAATTTGATCAAGGCAAGC+CGG | + | chr4_4:80824283-80824302 | Msa0707510:CDS | 40.0% | |
| !! | GCTGCGAACCTTTAAAACTA+TGG | + | chr4_4:80824334-80824353 | Msa0707510:intron | 40.0% |
| CTCACTATTGAAGGAGAAGA+TGG | + | chr4_4:80824673-80824692 | Msa0707510:CDS | 40.0% | |
| !!! | ACCTGGAAGTTTTTCAGGAT+GGG | - | chr4_4:80824710-80824729 | None:intergenic | 40.0% |
| !!! | AACCTGGAAGTTTTTCAGGA+TGG | - | chr4_4:80824711-80824730 | None:intergenic | 40.0% |
| !! | TTTTCAGGAGTGACAAGAGA+TGG | + | chr4_4:80824989-80825008 | Msa0707510:intron | 40.0% |
| CCTGTTGTATATGCCTTTGA+TGG | - | chr4_4:80825040-80825059 | None:intergenic | 40.0% | |
| ! | CCATCAAAGGCATATACAAC+AGG | + | chr4_4:80825037-80825056 | Msa0707510:CDS | 40.0% |
| ATACAACAGGAACACGAAAG+AGG | + | chr4_4:80825050-80825069 | Msa0707510:CDS | 40.0% | |
| TCCTTGTAAGTCACACTCTT+CGG | - | chr4_4:80825089-80825108 | None:intergenic | 40.0% | |
| ! | TGTGACTTACAAGGAAGTAC+AGG | + | chr4_4:80825094-80825113 | Msa0707510:CDS | 40.0% |
| GAAACAAGATGGCACAAAAC+TGG | + | chr4_4:80825121-80825140 | Msa0707510:CDS | 40.0% | |
| ACCAGACCTGTTATGGTTAA+TGG | + | chr4_4:80825148-80825167 | Msa0707510:CDS | 40.0% | |
| ACCATTAACCATAACAGGTC+TGG | - | chr4_4:80825152-80825171 | None:intergenic | 40.0% | |
| CTTGTTCTCTACACCAACTT+CGG | + | chr4_4:80825196-80825215 | Msa0707510:CDS | 40.0% | |
| ! | TTTTCGATTCTTGCCGAAGT+TGG | - | chr4_4:80825212-80825231 | None:intergenic | 40.0% |
| GAAAACCCGAGAAGACAAAT+TGG | + | chr4_4:80825227-80825246 | Msa0707510:CDS | 40.0% | |
| ATCACCCAATTTGTCTTCTC+GGG | - | chr4_4:80825235-80825254 | None:intergenic | 40.0% | |
| CATCACCCAATTTGTCTTCT+CGG | - | chr4_4:80825236-80825255 | None:intergenic | 40.0% | |
| GTGATGCATCAATACCATCT+TGG | + | chr4_4:80825250-80825269 | Msa0707510:CDS | 40.0% | |
| CTTCTTCATGTTGTCCAAGA+TGG | - | chr4_4:80825267-80825286 | None:intergenic | 40.0% | |
| TCAGACCAATTACACTGTCT+TGG | - | chr4_4:80825337-80825356 | None:intergenic | 40.0% | |
| AGTGCAACAACAACAACAAC+TGG | + | chr4_4:80825376-80825395 | Msa0707510:CDS | 40.0% | |
| ACAACAACAACAACTGGTGA+AGG | + | chr4_4:80825382-80825401 | Msa0707510:CDS | 40.0% | |
| AAGTGGAAGTTCTTCTTCCA+AGG | + | chr4_4:80825453-80825472 | Msa0707510:CDS | 40.0% | |
| GATGAAATGTCTGCTGTTGT+TGG | + | chr4_4:80825499-80825518 | Msa0707510:CDS | 40.0% | |
| !! | GTGAAGCTTGTTAAAGGACT+AGG | - | chr4_4:80825529-80825548 | None:intergenic | 40.0% |
| AACAAGCTTCACAAATGCCT+TGG | + | chr4_4:80825537-80825556 | Msa0707510:CDS | 40.0% | |
| GTAACTATGTATGTCGGTGT+CGG | - | chr4_4:80825700-80825719 | None:intergenic | 40.0% | |
| !! | CACTGATTTATCATCTGGTC+AGG | - | chr4_4:80826188-80826207 | None:intergenic | 40.0% |
| ACAAGAGAAATGCAAGCATC+AGG | + | chr4_4:80826371-80826390 | Msa0707510:CDS | 40.0% | |
| ACGCAGCTTTCCATATAAGT+AGG | + | chr4_4:80826537-80826556 | Msa0707510:CDS | 40.0% | |
| GATTGGAAGGCCTACTTATA+TGG | - | chr4_4:80826550-80826569 | None:intergenic | 40.0% | |
| ! | ATTGTCATCAAGGATGATGG+TGG | - | chr4_4:80826615-80826634 | None:intergenic | 40.0% |
| GGAGCATGATTGTTGAAACA+TGG | - | chr4_4:80826643-80826662 | None:intergenic | 40.0% | |
| CGCTAGGAAAAAACTATAGC+GGG | + | chr4_4:80826818-80826837 | Msa0707510:intron | 40.0% | |
| CATGTGGAAAGTGAGAAAAG+AGG | + | chr4_4:80827612-80827631 | Msa0707510:intron | 40.0% | |
| ! | ATGCACAATCAACCCCATTT+TGG | - | chr4_4:80827682-80827701 | None:intergenic | 40.0% |
| ! | AAAATGGGGTTGATTGTGCA+TGG | + | chr4_4:80827681-80827700 | Msa0707510:intron | 40.0% |
| CAACATCATAAACTAGGTGG+TGG | + | chr4_4:80827909-80827928 | Msa0707510:CDS | 40.0% | |
| !! | ATCATAAACTAGGTGGTGGA+AGG | + | chr4_4:80827913-80827932 | Msa0707510:CDS | 40.0% |
| ! | TGGTTTGGAGGAAGTCATTA+TGG | + | chr4_4:80827944-80827963 | Msa0707510:CDS | 40.0% |
| GGTTTGGAGGAAGTCATTAT+GGG | + | chr4_4:80827945-80827964 | Msa0707510:CDS | 40.0% | |
| GTTTGGAGGAAGTCATTATG+GGG | + | chr4_4:80827946-80827965 | Msa0707510:CDS | 40.0% | |
| AACGTCGTCTGATATCAAAG+AGG | + | chr4_4:80827977-80827996 | Msa0707510:CDS | 40.0% | |
| ! | CTCTTTTCTCTTTCCCTAGT+GGG | - | chr4_4:80828067-80828086 | None:intergenic | 40.0% |
| CACTAGGGAAAGAGAAAAGA+GGG | + | chr4_4:80828066-80828085 | Msa0707510:intron | 40.0% | |
| !! | AGCTTTTGACTATGATGACG+TGG | + | chr4_4:80828513-80828532 | Msa0707510:intron | 40.0% |
| ! | GATGATGGTTGTTGTCATGA+GGG | - | chr4_4:80828754-80828773 | None:intergenic | 40.0% |
| !! | TGATGATGGTTGTTGTCATG+AGG | - | chr4_4:80828755-80828774 | None:intergenic | 40.0% |
| ! | TTGGAAAGTGAGTTGAGGTA+TGG | - | chr4_4:80828861-80828880 | None:intergenic | 40.0% |
| !! | GTGCCTCTCATTTTTCTCAT+TGG | + | chr4_4:80828959-80828978 | Msa0707510:three_prime_UTR | 40.0% |
| GAAACACTAACTGTGTGCAA+CGG | + | chr4_4:80828981-80829000 | Msa0707510:three_prime_UTR | 40.0% | |
| AGTGTTTGGATCCACACAAC+TGG | - | chr4_4:80824247-80824266 | None:intergenic | 45.0% | |
| CAAATTTGTGTCCACAGCGA+GGG | - | chr4_4:80824271-80824290 | None:intergenic | 45.0% | |
| TCAAATTTGTGTCCACAGCG+AGG | - | chr4_4:80824272-80824291 | None:intergenic | 45.0% | |
| ACCGCGACTATTATACGTAC+CGG | - | chr4_4:80824305-80824324 | None:intergenic | 45.0% | |
| !! | TGGAACTAACAGGATTGGCT+AGG | + | chr4_4:80824535-80824554 | Msa0707510:intron | 45.0% |
| GGATCAAATTTCACTCCTGC+TGG | - | chr4_4:80824565-80824584 | None:intergenic | 45.0% | |
| ACCCATCCTGAAAAACTTCC+AGG | + | chr4_4:80824706-80824725 | Msa0707510:CDS | 45.0% | |
| ! | ACCGAAGAGTGTGACTTACA+AGG | + | chr4_4:80825085-80825104 | Msa0707510:CDS | 45.0% |
| ! | GACTTACAAGGAAGTACAGG+AGG | + | chr4_4:80825097-80825116 | Msa0707510:CDS | 45.0% |
| GTACAGGAGGAGAAACAAGA+TGG | + | chr4_4:80825110-80825129 | Msa0707510:CDS | 45.0% | |
| TGGTAAGACCAGACCTGTTA+TGG | + | chr4_4:80825141-80825160 | Msa0707510:CDS | 45.0% | |
| CACAGCCAAGACAGTGTAAT+TGG | + | chr4_4:80825329-80825348 | Msa0707510:CDS | 45.0% | |
| ACAACAACTGGTGAAGGAAG+TGG | + | chr4_4:80825388-80825407 | Msa0707510:CDS | 45.0% | |
| !! | GGAAGAAGAGATAGTGGAAG+TGG | + | chr4_4:80825436-80825455 | Msa0707510:CDS | 45.0% |
| AGTAGCTAGCTAACCAACGT+TGG | + | chr4_4:80826210-80826229 | Msa0707510:intron | 45.0% | |
| AGAGAAATGCAAGCATCAGG+AGG | + | chr4_4:80826374-80826393 | Msa0707510:CDS | 45.0% | |
| ! | ATAGTGGAGATGGGATTGGA+AGG | - | chr4_4:80826563-80826582 | None:intergenic | 45.0% |
| !! | GATGATAGTGGAGATGGGAT+TGG | - | chr4_4:80826567-80826586 | None:intergenic | 45.0% |
| !! | GGAGAGATGATAGTGGAGAT+GGG | - | chr4_4:80826572-80826591 | None:intergenic | 45.0% |
| !! | TGGAGAGATGATAGTGGAGA+TGG | - | chr4_4:80826573-80826592 | None:intergenic | 45.0% |
| ACAATTGCGATTGCATCGCT+AGG | + | chr4_4:80826802-80826821 | Msa0707510:intron | 45.0% | |
| ! | CCTCTTTTCTCTTTCCCTAG+TGG | - | chr4_4:80828068-80828087 | None:intergenic | 45.0% |
| CCACTAGGGAAAGAGAAAAG+AGG | + | chr4_4:80828065-80828084 | Msa0707510:intron | 45.0% | |
| GAAACCAACAAGAAGCTGAG+TGG | + | chr4_4:80828699-80828718 | Msa0707510:CDS | 45.0% | |
| TCAACCACTCAGCTTCTTGT+TGG | - | chr4_4:80828706-80828725 | None:intergenic | 45.0% | |
| !! | AGGCACCGAAGTTCATAAAC+CGG | - | chr4_4:80828945-80828964 | None:intergenic | 45.0% |
| ! | GTGTGCAACGGAACAAGTTT+TGG | + | chr4_4:80828993-80829012 | Msa0707510:three_prime_UTR | 45.0% |
| !!! | AATTATTAAAGTTTTATTAA+TGG | + | chr4_4:80827026-80827045 | Msa0707510:intron | 5.0% |
| !!! | TCTTTTTTATAAATAAAAAT+TGG | + | chr4_4:80827149-80827168 | Msa0707510:intron | 5.0% |
| !!! | CTTTTTTATAAATAAAAATT+GGG | + | chr4_4:80827150-80827169 | Msa0707510:intron | 5.0% |
| !!! | TTTTTTATAAATAAAAATTG+GGG | + | chr4_4:80827151-80827170 | Msa0707510:intron | 5.0% |
| !! | AATAAATATAAATAATATGA+TGG | - | chr4_4:80829235-80829254 | None:intergenic | 5.0% |
| GCCGGTACGTATAATAGTCG+CGG | + | chr4_4:80824301-80824320 | Msa0707510:intron | 50.0% | |
| ACGTATAATAGTCGCGGTCG+CGG | + | chr4_4:80824307-80824326 | Msa0707510:intron | 50.0% | |
| ACAACTGGTGAAGGAAGTGG+TGG | + | chr4_4:80825391-80825410 | Msa0707510:CDS | 50.0% | |
| !! | ATGTATGTCGGTGTCGGACA+TGG | - | chr4_4:80825694-80825713 | None:intergenic | 50.0% |
| CTAGGTGGGTAAACCAACGT+TGG | - | chr4_4:80826226-80826245 | None:intergenic | 50.0% | |
| ATCAGGAGGCTCATGTGATC+AGG | + | chr4_4:80826388-80826407 | Msa0707510:CDS | 50.0% | |
| CTGCGTTTGCACTAATCTGC+TGG | - | chr4_4:80826523-80826542 | None:intergenic | 50.0% | |
| !! | ATGGTGGATGTGTGATGGAG+GGG | - | chr4_4:80826599-80826618 | None:intergenic | 50.0% |
| !! | GATGGTGGATGTGTGATGGA+GGG | - | chr4_4:80826600-80826619 | None:intergenic | 50.0% |
| !! | TGATGGTGGATGTGTGATGG+AGG | - | chr4_4:80826601-80826620 | None:intergenic | 50.0% |
| !! | GGATGATGGTGGATGTGTGA+TGG | - | chr4_4:80826604-80826623 | None:intergenic | 50.0% |
| TTGTTGTCATGAGGGTCGAC+TGG | - | chr4_4:80828746-80828765 | None:intergenic | 50.0% | |
| ! | TCCCTCGTGACATCAAGTTG+AGG | + | chr4_4:80829122-80829141 | Msa0707510:three_prime_UTR | 50.0% |
| CCCTCAACTTGATGTCACGA+GGG | - | chr4_4:80829126-80829145 | None:intergenic | 50.0% | |
| !! | CCCTCGTGACATCAAGTTGA+GGG | + | chr4_4:80829123-80829142 | Msa0707510:three_prime_UTR | 50.0% |
| TCCCTCAACTTGATGTCACG+AGG | - | chr4_4:80829127-80829146 | None:intergenic | 50.0% | |
| !! | CTGGAAGAGCACCAGTTGTG+TGG | + | chr4_4:80824233-80824252 | Msa0707510:CDS | 55.0% |
| ! | GATTGGCTAGGTCTACCAGC+AGG | + | chr4_4:80824547-80824566 | Msa0707510:CDS | 55.0% |
| AGGAGGCTCATGTGATCAGG+AGG | + | chr4_4:80826391-80826410 | Msa0707510:CDS | 55.0% | |
| GGGAGCTGGAGAGATGATAG+TGG | - | chr4_4:80826579-80826598 | None:intergenic | 55.0% | |
| TGGAAGGTCTGCGTCTGGTT+TGG | + | chr4_4:80827929-80827948 | Msa0707510:CDS | 55.0% | |
| !! | AAGGTCTGCGTCTGGTTTGG+AGG | + | chr4_4:80827932-80827951 | Msa0707510:CDS | 55.0% |
| TCCAAACACTGCCCTCGCTG+TGG | + | chr4_4:80824257-80824276 | Msa0707510:CDS | 60.0% | |
| TCCACAGCGAGGGCAGTGTT+TGG | - | chr4_4:80824261-80824280 | None:intergenic | 60.0% | |
| ! | GATGTGTGATGGAGGGGAGC+TGG | - | chr4_4:80826593-80826612 | None:intergenic | 60.0% |
| CTGCTGCTGTTGCTGCCATG+TGG | - | chr4_4:80827886-80827905 | None:intergenic | 60.0% | |
| !! | GGTGGTGGAAGGTCTGCGTC+TGG | + | chr4_4:80827924-80827943 | Msa0707510:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 80823608 | 80829523 | 80823608 | ID=Msa0707510;Name=Msa0707510 |
| chr4_4 | mRNA | 80823608 | 80829523 | 80823608 | ID=Msa0707510-mRNA-1;Parent=Msa0707510;Name=Msa0707510-mRNA-1;_AED=0.06;_eAED=0.06;_QI=351|1|1|1|0.83|0.71|7|739|490 |
| chr4_4 | exon | 80823608 | 80823807 | 80823608 | ID=Msa0707510-mRNA-1:exon:26358;Parent=Msa0707510-mRNA-1 |
| chr4_4 | exon | 80824028 | 80824304 | 80824028 | ID=Msa0707510-mRNA-1:exon:26359;Parent=Msa0707510-mRNA-1 |
| chr4_4 | exon | 80824547 | 80824727 | 80824547 | ID=Msa0707510-mRNA-1:exon:26360;Parent=Msa0707510-mRNA-1 |
| chr4_4 | exon | 80824996 | 80825621 | 80824996 | ID=Msa0707510-mRNA-1:exon:26361;Parent=Msa0707510-mRNA-1 |
| chr4_4 | exon | 80826347 | 80826682 | 80826347 | ID=Msa0707510-mRNA-1:exon:26362;Parent=Msa0707510-mRNA-1 |
| chr4_4 | exon | 80827894 | 80827998 | 80827894 | ID=Msa0707510-mRNA-1:exon:26363;Parent=Msa0707510-mRNA-1 |
| chr4_4 | exon | 80828686 | 80829523 | 80828686 | ID=Msa0707510-mRNA-1:exon:26364;Parent=Msa0707510-mRNA-1 |
| chr4_4 | five_prime_UTR | 80823608 | 80823807 | 80823608 | ID=Msa0707510-mRNA-1:five_prime_utr;Parent=Msa0707510-mRNA-1 |
| chr4_4 | five_prime_UTR | 80824028 | 80824178 | 80824028 | ID=Msa0707510-mRNA-1:five_prime_utr;Parent=Msa0707510-mRNA-1 |
| chr4_4 | CDS | 80824179 | 80824304 | 80824179 | ID=Msa0707510-mRNA-1:cds;Parent=Msa0707510-mRNA-1 |
| chr4_4 | CDS | 80824547 | 80824727 | 80824547 | ID=Msa0707510-mRNA-1:cds;Parent=Msa0707510-mRNA-1 |
| chr4_4 | CDS | 80824996 | 80825621 | 80824996 | ID=Msa0707510-mRNA-1:cds;Parent=Msa0707510-mRNA-1 |
| chr4_4 | CDS | 80826347 | 80826682 | 80826347 | ID=Msa0707510-mRNA-1:cds;Parent=Msa0707510-mRNA-1 |
| chr4_4 | CDS | 80827894 | 80827998 | 80827894 | ID=Msa0707510-mRNA-1:cds;Parent=Msa0707510-mRNA-1 |
| chr4_4 | CDS | 80828686 | 80828784 | 80828686 | ID=Msa0707510-mRNA-1:cds;Parent=Msa0707510-mRNA-1 |
| chr4_4 | three_prime_UTR | 80828785 | 80829523 | 80828785 | ID=Msa0707510-mRNA-1:three_prime_utr;Parent=Msa0707510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
