Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463540 | XP_003625016.2 | 95.251 | 379 | 18 | 0 | 1 | 379 | 1 | 379 | 0.0 | 748 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463540 | sp|F4K933|ET2_ARATH | 42.308 | 390 | 186 | 9 | 1 | 380 | 11 | 371 | 2.01e-90 | 283 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463540 | G7KQU4 | 95.251 | 379 | 18 | 0 | 1 | 379 | 1 | 379 | 0.0 | 748 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1463540 | TF | HRT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1160430 | Msa1463540 | 0.890020 | 1.436390e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463540 | MtrunA17_Chr7g0256351 | 95.251 | 379 | 18 | 0 | 1 | 379 | 1 | 379 | 0.0 | 748 |
| Msa1463540 | MtrunA17_Chr6g0488451 | 73.995 | 373 | 86 | 3 | 6 | 378 | 2 | 363 | 0.0 | 551 |
| Msa1463540 | MtrunA17_Chr6g0488431 | 60.909 | 110 | 38 | 1 | 6 | 115 | 4 | 108 | 2.31e-40 | 139 |
| Msa1463540 | MtrunA17_Chr6g0488421 | 50.000 | 106 | 27 | 1 | 125 | 230 | 22 | 101 | 7.62e-26 | 109 |
| Msa1463540 | MtrunA17_Chr6g0488421 | 65.909 | 44 | 15 | 0 | 270 | 313 | 331 | 374 | 1.26e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463540 | AT5G56780.1 | 42.308 | 390 | 186 | 9 | 1 | 380 | 11 | 371 | 2.04e-91 | 283 |
| Msa1463540 | AT5G56770.1 | 42.529 | 174 | 76 | 4 | 2 | 174 | 51 | 201 | 6.85e-36 | 132 |
Find 138 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACAACCTTCCTCAGAAAT+TGG | 0.157069 | tig0043366:-8623 | Msa1463540:CDS |
| TTATTCACTTGCGTCGTCTT+AGG | 0.164654 | tig0043366:+9502 | None:intergenic |
| CTACATCATGGCTGGCATTT+TGG | 0.209063 | tig0043366:+7057 | None:intergenic |
| AACGGGAAGGTCATTGTTTC+AGG | 0.214002 | tig0043366:-8401 | Msa1463540:CDS |
| TTCTCCTCCCTTTATGTTCC+TGG | 0.242712 | tig0043366:+6907 | None:intergenic |
| GGCAGCTTGCTTGATTTAAT+TGG | 0.245613 | tig0043366:+7383 | None:intergenic |
| CCGATGGTTCTATTTGTAAA+AGG | 0.246592 | tig0043366:-7205 | Msa1463540:CDS |
| AGCTGTGTCGCGTAGTAATC+TGG | 0.263388 | tig0043366:-8575 | Msa1463540:CDS |
| GCTTCCCAATTGTTTATAGA+TGG | 0.289991 | tig0043366:-8363 | Msa1463540:CDS |
| TTGGTATCCCCACTTTCCTC+TGG | 0.290433 | tig0043366:+7402 | None:intergenic |
| AAACCATCTAAATTCATATA+TGG | 0.291135 | tig0043366:+6757 | None:intergenic |
| CAAGATGATTCCACATATAA+TGG | 0.291500 | tig0043366:+6980 | None:intergenic |
| ATTCTCATTCCTTTGTGTTC+AGG | 0.303340 | tig0043366:+7155 | None:intergenic |
| TGTAGAAGACAACCGGTTAA+AGG | 0.332466 | tig0043366:-6942 | Msa1463540:CDS |
| TCAAGTTAAGGAACTTTGTT+TGG | 0.338399 | tig0043366:-9566 | Msa1463540:five_prime_UTR |
| AAACCATATATGAATTTAGA+TGG | 0.345737 | tig0043366:-6760 | Msa1463540:three_prime_UTR |
| CTTGGGTGATCTGATTGCTT+TGG | 0.351144 | tig0043366:+7118 | None:intergenic |
| GGCATTTCACAACTTGCTTC+GGG | 0.351871 | tig0043366:-9609 | Msa1463540:five_prime_UTR |
| TTCTTATTGGTCCTTCTGAT+TGG | 0.353606 | tig0043366:-8690 | Msa1463540:CDS |
| GTCAAATAGTCGTAGCTAAT+AGG | 0.355671 | tig0043366:-6598 | Msa1463540:three_prime_UTR |
| GCATTGTAGGTAATGCTTAT+AGG | 0.363449 | tig0043366:-7082 | Msa1463540:CDS |
| TCAGAATTAGAAAGCATTGT+AGG | 0.383504 | tig0043366:-7095 | Msa1463540:CDS |
| AAGGTCTTAATTCCAGCATC+TGG | 0.388956 | tig0043366:-6680 | Msa1463540:three_prime_UTR |
| TGGCATTTCACAACTTGCTT+CGG | 0.391389 | tig0043366:-9610 | Msa1463540:five_prime_UTR |
| GGTGAAAGGTAGAAGCAATT+TGG | 0.393179 | tig0043366:+7424 | None:intergenic |
| AAAAGGTGCCAGGAACATAA+AGG | 0.395561 | tig0043366:-6915 | Msa1463540:CDS |
| GGAGCCCATCTATAAACAAT+TGG | 0.397811 | tig0043366:+8358 | None:intergenic |
| GAAGAATCTAATTCAAGTTA+AGG | 0.403150 | tig0043366:-9578 | Msa1463540:five_prime_UTR |
| AAACTTGAAGAAATTCTCAT+TGG | 0.408901 | tig0043366:-9645 | Msa1463540:five_prime_UTR |
| AACCGGTTAAAGGAAGAAAA+AGG | 0.410668 | tig0043366:-6932 | Msa1463540:CDS |
| TATTTGTATTAATTCCTTGA+AGG | 0.412691 | tig0043366:-6521 | Msa1463540:three_prime_UTR |
| CATGAGAATGCTAAAATTTG+CGG | 0.413022 | tig0043366:-7239 | Msa1463540:CDS |
| CTGATACAATACAACCTTCA+AGG | 0.419898 | tig0043366:+6507 | None:intergenic |
| CGCATAGTTGTGGTTTACCT+TGG | 0.426319 | tig0043366:-8517 | Msa1463540:CDS |
| GCCTCTGACAGATGACAAAC+TGG | 0.430967 | tig0043366:-7363 | Msa1463540:CDS |
| TCTTATTGGTCCTTCTGATT+GGG | 0.433564 | tig0043366:-8689 | Msa1463540:CDS |
| CACAACCTTCCTCAGAAATT+GGG | 0.434094 | tig0043366:-8622 | Msa1463540:CDS |
| GTCACGTCCTTGGATAGTTC+AGG | 0.435030 | tig0043366:-7285 | Msa1463540:CDS |
| CCCGTGTGTTCAAATTAAAC+AGG | 0.435752 | tig0043366:-7307 | Msa1463540:CDS |
| AATTAAACAGGTCACGTCCT+TGG | 0.438593 | tig0043366:-7295 | Msa1463540:CDS |
| TATTCACTTGCGTCGTCTTA+GGG | 0.441443 | tig0043366:+9503 | None:intergenic |
| GCAGCTGAGATTCTGTTCTC+AGG | 0.444652 | tig0043366:+7561 | None:intergenic |
| CATTATATGTGGAATCATCT+TGG | 0.451174 | tig0043366:-6979 | Msa1463540:CDS |
| GAAATAACAAACAGCTCTCT+AGG | 0.454495 | tig0043366:-6626 | Msa1463540:three_prime_UTR |
| TACTTGTTGAAGCAGGAGTT+AGG | 0.457015 | tig0043366:-6470 | Msa1463540:three_prime_UTR |
| AAGACGACGCAAGTGAATAA+TGG | 0.458982 | tig0043366:-9499 | Msa1463540:exon |
| GTGGAGGGTCTTCTACATCA+TGG | 0.463412 | tig0043366:+7045 | None:intergenic |
| CTTCCCAATTGTTTATAGAT+GGG | 0.464946 | tig0043366:-8362 | Msa1463540:CDS |
| GGGTGATCTGATTGCTTTGG+CGG | 0.466767 | tig0043366:+7121 | None:intergenic |
| AGAGCAAGACTCCAGCGTTA+TGG | 0.467691 | tig0043366:-8478 | Msa1463540:CDS |
| CCTTCCTCAGAAATTGGGTC+CGG | 0.470635 | tig0043366:-8617 | Msa1463540:CDS |
| TGACTCTTAACCATTCTTTG+TGG | 0.474955 | tig0043366:+7026 | None:intergenic |
| GGAAGACTATTCCAAAGAAA+AGG | 0.474965 | tig0043366:-8668 | Msa1463540:CDS |
| TGCAATCTGTGAAAAGAAAT+CGG | 0.475332 | tig0043366:+9688 | None:intergenic |
| AAGGTTGTGAATCCTGTATC+TGG | 0.479106 | tig0043366:+8636 | None:intergenic |
| AACAATGTGCGAAGACGTAA+AGG | 0.484874 | tig0043366:-6720 | Msa1463540:three_prime_UTR |
| AGCATTTGAAGAATATCATC+AGG | 0.489085 | tig0043366:+7488 | None:intergenic |
| AGGAAGGATCTACCAGATAC+AGG | 0.491164 | tig0043366:-8648 | Msa1463540:CDS |
| ATGCTCAACAAATTAGCTTC+AGG | 0.496009 | tig0043366:-7470 | Msa1463540:CDS |
| CTCCAGCGTTATGGCAGGAA+TGG | 0.496259 | tig0043366:-8469 | Msa1463540:CDS |
| TGGCAAGCTTGTAAATTTCA+CGG | 0.499268 | tig0043366:+8551 | None:intergenic |
| CTTCCTCAGAAATTGGGTCC+GGG | 0.499654 | tig0043366:-8616 | Msa1463540:CDS |
| CCCACTTTCCTCTGGGTGAA+AGG | 0.500019 | tig0043366:+7410 | None:intergenic |
| AATGCTTTCTAATTCTGACT+TGG | 0.501548 | tig0043366:+7100 | None:intergenic |
| TGGTATCCCCACTTTCCTCT+GGG | 0.502512 | tig0043366:+7403 | None:intergenic |
| ATGCTTTCTAATTCTGACTT+GGG | 0.502963 | tig0043366:+7101 | None:intergenic |
| TCTTAACCATTCTTTGTGGA+GGG | 0.504208 | tig0043366:+7030 | None:intergenic |
| TGTGATAACCGTTGTTCACT+AGG | 0.504562 | tig0043366:+9536 | None:intergenic |
| CTCTTAACCATTCTTTGTGG+AGG | 0.504735 | tig0043366:+7029 | None:intergenic |
| ATCCACTTGTAGAAGACAAC+CGG | 0.506149 | tig0043366:-6949 | Msa1463540:CDS |
| AGAAGACCCTCCACAAAGAA+TGG | 0.506283 | tig0043366:-7036 | Msa1463540:CDS |
| GAGCCCATCTATAAACAATT+GGG | 0.508603 | tig0043366:+8359 | None:intergenic |
| GGGTAGAAGAAGGCGGTTGA+AGG | 0.508905 | tig0043366:-6699 | Msa1463540:three_prime_UTR |
| ATCGTCAAAACCATTATATG+TGG | 0.512247 | tig0043366:-6990 | Msa1463540:CDS |
| ACTTGCATATATCCAGATGC+TGG | 0.516224 | tig0043366:+6668 | None:intergenic |
| TTCTATTTGTAAAAGGCCAC+CGG | 0.517076 | tig0043366:-7198 | Msa1463540:CDS |
| ATGATTCTAGCTTCTCCCGC+TGG | 0.517190 | tig0043366:-9434 | Msa1463540:CDS |
| TGTTGAAGCAGGAGTTAGGT+TGG | 0.521433 | tig0043366:-6466 | Msa1463540:three_prime_UTR |
| ACCTGTTTAATTTGAACACA+CGG | 0.522258 | tig0043366:+7306 | None:intergenic |
| GATGACTCTTCTCTACGAAC+GGG | 0.523910 | tig0043366:-8418 | Msa1463540:CDS |
| AGGGTCTTCTACATCATGGC+TGG | 0.525907 | tig0043366:+7049 | None:intergenic |
| CTCATTGGAATACAATATGA+TGG | 0.528612 | tig0043366:-9630 | Msa1463540:five_prime_UTR |
| AACCGGTTGTCTTCTACAAG+TGG | 0.530917 | tig0043366:+6947 | None:intergenic |
| TTAGTACATTTGATTATGCA+TGG | 0.537544 | tig0043366:-7538 | Msa1463540:CDS |
| AAAGGTGCCAGGAACATAAA+GGG | 0.538956 | tig0043366:-6914 | Msa1463540:CDS |
| ACCTTTCACCCAGAGGAAAG+TGG | 0.539145 | tig0043366:-7411 | Msa1463540:CDS |
| TGTGGAATCATCTTGGATGA+TGG | 0.539642 | tig0043366:-6972 | Msa1463540:CDS |
| CAGCTGAGATTCTGTTCTCA+GGG | 0.541120 | tig0043366:+7562 | None:intergenic |
| CCTTTCACCCAGAGGAAAGT+GGG | 0.542001 | tig0043366:-7410 | Msa1463540:CDS |
| TGACCCTCGTCGCATAGTTG+TGG | 0.547054 | tig0043366:-8527 | Msa1463540:CDS |
| ACTCCAAGCTCGTACACCCC+CGG | 0.547377 | tig0043366:+8598 | None:intergenic |
| TTAATTTGAACACACGGGAT+AGG | 0.547956 | tig0043366:+7312 | None:intergenic |
| CAAGACTCCAGCGTTATGGC+AGG | 0.554748 | tig0043366:-8474 | Msa1463540:CDS |
| CTCCATTCCTGCCATAACGC+TGG | 0.555122 | tig0043366:+8467 | None:intergenic |
| TTCTAGCTTCTCCCGCTGGA+AGG | 0.556013 | tig0043366:-9430 | Msa1463540:intron |
| ATCTGTGAAAAGAAATCGGA+TGG | 0.556468 | tig0043366:+9692 | None:intergenic |
| GCTGTGTCGCGTAGTAATCT+GGG | 0.557788 | tig0043366:-8574 | Msa1463540:CDS |
| TTCCTCAGAAATTGGGTCCG+GGG | 0.559029 | tig0043366:-8615 | Msa1463540:CDS |
| TAAAATTTGCGGAGTGATGT+TGG | 0.559942 | tig0043366:-7228 | Msa1463540:CDS |
| ACAAGAATACTTGTTGAAGC+AGG | 0.561254 | tig0043366:-6477 | Msa1463540:three_prime_UTR |
| GTTAAGAGTCATGTTGATGA+GGG | 0.562383 | tig0043366:-7014 | Msa1463540:CDS |
| GAATAGTCTTCCCAATCAGA+AGG | 0.574116 | tig0043366:+8679 | None:intergenic |
| GGTTAAGAGTCATGTTGATG+AGG | 0.575589 | tig0043366:-7015 | Msa1463540:CDS |
| CCGGACCCAATTTCTGAGGA+AGG | 0.577737 | tig0043366:+8617 | None:intergenic |
| GGTCGTCAACAGATTGAAGC+GGG | 0.577925 | tig0043366:-9478 | Msa1463540:CDS |
| AGATGACTCTTCTCTACGAA+CGG | 0.578063 | tig0043366:-8419 | Msa1463540:CDS |
| TCCTCAGAAATTGGGTCCGG+GGG | 0.579255 | tig0043366:-8614 | Msa1463540:CDS |
| GCAAGTATAAATTGACATTG+TGG | 0.581260 | tig0043366:-6651 | Msa1463540:three_prime_UTR |
| TGGATAGTTCAGGATACCAC+TGG | 0.582070 | tig0043366:-7275 | Msa1463540:CDS |
| TGCGGAGTGATGTTGGCCGA+TGG | 0.582561 | tig0043366:-7221 | Msa1463540:CDS |
| AACTATGCGACGAGGGTCAG+TGG | 0.584771 | tig0043366:+8531 | None:intergenic |
| CCTGTTTAATTTGAACACAC+GGG | 0.590009 | tig0043366:+7307 | None:intergenic |
| TGATCTGATTGCTTTGGCGG+CGG | 0.601310 | tig0043366:+7124 | None:intergenic |
| TCCAGTTTGTCATCTGTCAG+AGG | 0.601705 | tig0043366:+7362 | None:intergenic |
| AAGACGTAAAGGGTAGAAGA+AGG | 0.610367 | tig0043366:-6709 | Msa1463540:three_prime_UTR |
| TGCTTCTACCTTTCACCCAG+AGG | 0.610412 | tig0043366:-7418 | Msa1463540:CDS |
| GACTATTCCAAAGAAAAGGA+AGG | 0.610651 | tig0043366:-8664 | Msa1463540:CDS |
| GTGGTATCCTGAACTATCCA+AGG | 0.621004 | tig0043366:+7278 | None:intergenic |
| ACAATGTGCGAAGACGTAAA+GGG | 0.627108 | tig0043366:-6719 | Msa1463540:three_prime_UTR |
| ATTGATATGAACCTTCCAGC+GGG | 0.629000 | tig0043366:+9419 | None:intergenic |
| ACACAATCAGCAATGGTACA+CGG | 0.630313 | tig0043366:-7514 | Msa1463540:CDS |
| GCATGGAACACAATCAGCAA+TGG | 0.645734 | tig0043366:-7521 | Msa1463540:CDS |
| TGGTCGTCAACAGATTGAAG+CGG | 0.649124 | tig0043366:-9479 | Msa1463540:CDS |
| TATTGAACAGATGCAAAACG+AGG | 0.650690 | tig0043366:-7591 | Msa1463540:intron |
| GCACTTCTCCTAGTGAACAA+CGG | 0.659176 | tig0043366:-9544 | Msa1463540:five_prime_UTR |
| ATGAGTGGCACTACCACCAG+TGG | 0.671537 | tig0043366:+7259 | None:intergenic |
| ACTCTTCTCTACGAACGGGA+AGG | 0.673197 | tig0043366:-8414 | Msa1463540:CDS |
| CTTTCACCCAGAGGAAAGTG+GGG | 0.681368 | tig0043366:-7409 | Msa1463540:CDS |
| ATTGAACAGATGCAAAACGA+GGG | 0.682609 | tig0043366:-7590 | Msa1463540:intron |
| AAACCACAACTATGCGACGA+GGG | 0.687191 | tig0043366:+8524 | None:intergenic |
| AATTGATATGAACCTTCCAG+CGG | 0.711586 | tig0043366:+9418 | None:intergenic |
| ACGTAAAGGGTAGAAGAAGG+CGG | 0.717504 | tig0043366:-6706 | Msa1463540:three_prime_UTR |
| GTGAGGTGTCCTGAACACAA+AGG | 0.719035 | tig0043366:-7164 | Msa1463540:CDS |
| ATAGTTCAGGATACCACTGG+TGG | 0.727765 | tig0043366:-7272 | Msa1463540:CDS |
| TAAACCACAACTATGCGACG+AGG | 0.730870 | tig0043366:+8523 | None:intergenic |
| GGTGCCAGGAACATAAAGGG+AGG | 0.732457 | tig0043366:-6911 | Msa1463540:CDS |
| AAACTGGATGAAGCTGACAG+TGG | 0.772229 | tig0043366:-7347 | Msa1463540:CDS |
| CAATCAGCAATGGTACACGG+CGG | 0.806089 | tig0043366:-7511 | Msa1463540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTTATTTGGTTAT+TGG | - | tig0043366:7081-7100 | Msa1463540:CDS | 10.0% |
| !! | TTGAAAAAATAATTGAATTT+AGG | - | tig0043366:9293-9312 | Msa1463540:intron | 10.0% |
| !!! | GAACAAGATATTTTTTTATT+TGG | - | tig0043366:7074-7093 | Msa1463540:CDS | 15.0% |
| !! | TTGTTAACTTAACTATAATA+TGG | + | tig0043366:7327-7346 | None:intergenic | 15.0% |
| !!! | TATATAAAAGTGCAATTTTT+TGG | - | tig0043366:8521-8540 | Msa1463540:CDS | 15.0% |
| !!! | TTCCATTTAGATAATTTTCT+GGG | - | tig0043366:6936-6955 | Msa1463540:CDS | 20.0% |
| !!! | AAATTGAAAGCTTTAAAAAG+TGG | + | tig0043366:6965-6984 | None:intergenic | 20.0% |
| !! | ATTTCAAAAAAGTCATTGAT+TGG | - | tig0043366:7955-7974 | Msa1463540:intron | 20.0% |
| !! | AAACCATATATGAATTTAGA+TGG | - | tig0043366:9406-9425 | Msa1463540:intron | 20.0% |
| !! | AAACCATCTAAATTCATATA+TGG | + | tig0043366:9412-9431 | None:intergenic | 20.0% |
| !! | TATTTGTATTAATTCCTTGA+AGG | - | tig0043366:9645-9664 | Msa1463540:five_prime_UTR | 20.0% |
| ! | AAACTTGAAGAAATTCTCAT+TGG | - | tig0043366:6521-6540 | Msa1463540:three_prime_UTR | 25.0% |
| !! | GAAGAATCTAATTCAAGTTA+AGG | - | tig0043366:6588-6607 | Msa1463540:three_prime_UTR | 25.0% |
| !! | CACTAAAAGAATGAAGTATT+AGG | + | tig0043366:6893-6912 | None:intergenic | 25.0% |
| ! | CAGAAAATTATCTAAATGGA+AGG | + | tig0043366:6937-6956 | None:intergenic | 25.0% |
| !! | CTTCCATTTAGATAATTTTC+TGG | - | tig0043366:6935-6954 | Msa1463540:CDS | 25.0% |
| !! | AAAAGCTATTGATTGTATGA+TGG | - | tig0043366:6997-7016 | Msa1463540:CDS | 25.0% |
| !! | TAGTTTTCGTCATTCTATTA+TGG | + | tig0043366:7383-7402 | None:intergenic | 25.0% |
| !! | AACTGTTTTCAGATTCTTAT+TGG | - | tig0043366:7463-7482 | Msa1463540:CDS | 25.0% |
| ! | AATATCAGATATGTACTTAC+AGG | + | tig0043366:7832-7851 | None:intergenic | 25.0% |
| ! | ACGTTATCATATGATAGTAT+AGG | - | tig0043366:7984-8003 | Msa1463540:intron | 25.0% |
| ! | CGTTATCATATGATAGTATA+GGG | - | tig0043366:7985-8004 | Msa1463540:intron | 25.0% |
| ! | ACCTAAATTACATAGATTTC+AGG | + | tig0043366:8092-8111 | None:intergenic | 25.0% |
| !! | TAACCCAATTCCATTTTAAA+TGG | - | tig0043366:8232-8251 | Msa1463540:intron | 25.0% |
| !! | AACCCAATTCCATTTTAAAT+GGG | - | tig0043366:8233-8252 | Msa1463540:intron | 25.0% |
| !!! | AATTTTGATTGTGTCACTTT+TGG | + | tig0043366:8325-8344 | None:intergenic | 25.0% |
| ! | AAGTGACACAATCAAAATTT+AGG | - | tig0043366:8326-8345 | Msa1463540:intron | 25.0% |
| ! | GAATTATCATAATAGACTAG+TGG | + | tig0043366:8389-8408 | None:intergenic | 25.0% |
| !!! | GCAATTTTTTGGAACTATAA+TGG | - | tig0043366:8532-8551 | Msa1463540:CDS | 25.0% |
| ! | TTAGTACATTTGATTATGCA+TGG | - | tig0043366:8628-8647 | Msa1463540:CDS | 25.0% |
| !! | GCTATAATAAGTACATTTTG+TGG | + | tig0043366:9363-9382 | None:intergenic | 25.0% |
| ! | AGGTAGTAAGATAAAAATGT+TGG | - | tig0043366:9588-9607 | Msa1463540:five_prime_UTR | 25.0% |
| TGCAATCTGTGAAAAGAAAT+CGG | + | tig0043366:6481-6500 | None:intergenic | 30.0% | |
| CTCATTGGAATACAATATGA+TGG | - | tig0043366:6536-6555 | Msa1463540:three_prime_UTR | 30.0% | |
| TCAAGTTAAGGAACTTTGTT+TGG | - | tig0043366:6600-6619 | Msa1463540:three_prime_UTR | 30.0% | |
| !! | AGCTAGAATCATGTTTTGTT+CGG | + | tig0043366:6724-6743 | None:intergenic | 30.0% |
| ! | TTAATGTTTCTACGAATCTG+TGG | - | tig0043366:6820-6839 | Msa1463540:three_prime_UTR | 30.0% |
| ! | AGAATGAAGTATTAGGCTTT+AGG | + | tig0043366:6886-6905 | None:intergenic | 30.0% |
| AGCCCAGAAAATTATCTAAA+TGG | + | tig0043366:6941-6960 | None:intergenic | 30.0% | |
| TCAAATAAACACACATACAC+AGG | - | tig0043366:7123-7142 | Msa1463540:CDS | 30.0% | |
| CAAATAAACACACATACACA+GGG | - | tig0043366:7124-7143 | Msa1463540:CDS | 30.0% | |
| TTCTTTCAACTGTACAAATC+TGG | - | tig0043366:7404-7423 | Msa1463540:CDS | 30.0% | |
| ! | TTTCAGGAGATATTTTCACA+AGG | - | tig0043366:7781-7800 | Msa1463540:intron | 30.0% |
| CTTCCCAATTGTTTATAGAT+GGG | - | tig0043366:7804-7823 | Msa1463540:intron | 30.0% | |
| TGCAACTGAACATGTATTAA+TGG | - | tig0043366:7885-7904 | Msa1463540:intron | 30.0% | |
| GCAACTGAACATGTATTAAT+GGG | - | tig0043366:7886-7905 | Msa1463540:intron | 30.0% | |
| !! | TGAACATGTATTAATGGGTT+CGG | - | tig0043366:7891-7910 | Msa1463540:intron | 30.0% |
| TAGTATAGGGTATAACTCAA+AGG | - | tig0043366:7998-8017 | Msa1463540:intron | 30.0% | |
| AATTCATAGCTTAAGAATGG+AGG | + | tig0043366:8050-8069 | None:intergenic | 30.0% | |
| GCTAATTCATAGCTTAAGAA+TGG | + | tig0043366:8053-8072 | None:intergenic | 30.0% | |
| AATTAGCAGTGCTCATTTAA+AGG | - | tig0043366:8066-8085 | Msa1463540:intron | 30.0% | |
| GCCTGAAATCTATGTAATTT+AGG | - | tig0043366:8088-8107 | Msa1463540:intron | 30.0% | |
| ! | GACCCATTTAAAATGGAATT+GGG | + | tig0043366:8238-8257 | None:intergenic | 30.0% |
| AAAACTGGACCCATTTAAAA+TGG | + | tig0043366:8245-8264 | None:intergenic | 30.0% | |
| !! | TTCAGTTCTAGAGATATGTT+AGG | - | tig0043366:8297-8316 | Msa1463540:intron | 30.0% |
| ! | CACAATCAAAATTTAGGACA+AGG | - | tig0043366:8332-8351 | Msa1463540:intron | 30.0% |
| ! | TCAAAATTTAGGACAAGGTT+AGG | - | tig0043366:8337-8356 | Msa1463540:intron | 30.0% |
| ! | CAAAATTTAGGACAAGGTTA+GGG | - | tig0043366:8338-8357 | Msa1463540:intron | 30.0% |
| CAAAATCTACTGTTGATATG+TGG | - | tig0043366:8445-8464 | Msa1463540:CDS | 30.0% | |
| AGCATTTGAAGAATATCATC+AGG | + | tig0043366:8681-8700 | None:intergenic | 30.0% | |
| !! | ACCTGTTTAATTTGAACACA+CGG | + | tig0043366:8863-8882 | None:intergenic | 30.0% |
| !! | AATTTTAGCATTCTCATGAG+TGG | + | tig0043366:8925-8944 | None:intergenic | 30.0% |
| CATGAGAATGCTAAAATTTG+CGG | - | tig0043366:8927-8946 | Msa1463540:intron | 30.0% | |
| ! | CCTTTTACAAATAGAACCAT+CGG | + | tig0043366:8964-8983 | None:intergenic | 30.0% |
| ATGCTTTCTAATTCTGACTT+GGG | + | tig0043366:9068-9087 | None:intergenic | 30.0% | |
| AATGCTTTCTAATTCTGACT+TGG | + | tig0043366:9069-9088 | None:intergenic | 30.0% | |
| !! | TCAGAATTAGAAAGCATTGT+AGG | - | tig0043366:9071-9090 | Msa1463540:intron | 30.0% |
| ATCGTCAAAACCATTATATG+TGG | - | tig0043366:9176-9195 | Msa1463540:intron | 30.0% | |
| CAAGATGATTCCACATATAA+TGG | + | tig0043366:9189-9208 | None:intergenic | 30.0% | |
| CATTATATGTGGAATCATCT+TGG | - | tig0043366:9187-9206 | Msa1463540:intron | 30.0% | |
| !! | TAGATGGTTTTTGTTGTACA+AGG | - | tig0043366:9422-9441 | Msa1463540:intron | 30.0% |
| GCAAGTATAAATTGACATTG+TGG | - | tig0043366:9515-9534 | Msa1463540:five_prime_UTR | 30.0% | |
| ATCTGTGAAAAGAAATCGGA+TGG | + | tig0043366:6477-6496 | None:intergenic | 35.0% | |
| AATTGATATGAACCTTCCAG+CGG | + | tig0043366:6751-6770 | None:intergenic | 35.0% | |
| GTGTTTATTTGAGCATGTGT+TGG | + | tig0043366:7115-7134 | None:intergenic | 35.0% | |
| GTTACCTTCTTACCTTGATT+TGG | - | tig0043366:7426-7445 | Msa1463540:CDS | 35.0% | |
| TTCTTATTGGTCCTTCTGAT+TGG | - | tig0043366:7476-7495 | Msa1463540:CDS | 35.0% | |
| TCTTATTGGTCCTTCTGATT+GGG | - | tig0043366:7477-7496 | Msa1463540:CDS | 35.0% | |
| GGAAGACTATTCCAAAGAAA+AGG | - | tig0043366:7498-7517 | Msa1463540:CDS | 35.0% | |
| GACTATTCCAAAGAAAAGGA+AGG | - | tig0043366:7502-7521 | Msa1463540:CDS | 35.0% | |
| TGGCAAGCTTGTAAATTTCA+CGG | + | tig0043366:7618-7637 | None:intergenic | 35.0% | |
| GCTTCCCAATTGTTTATAGA+TGG | - | tig0043366:7803-7822 | Msa1463540:intron | 35.0% | |
| GAGCCCATCTATAAACAATT+GGG | + | tig0043366:7810-7829 | None:intergenic | 35.0% | |
| ! | ACTATTAGCTTCAGCATCTT+AGG | - | tig0043366:7929-7948 | Msa1463540:intron | 35.0% |
| ! | AGGGTATAACTCAAAGGTTT+TGG | - | tig0043366:8004-8023 | Msa1463540:intron | 35.0% |
| ! | GGACCCATTTAAAATGGAAT+TGG | + | tig0043366:8239-8258 | None:intergenic | 35.0% |
| TCTATACCTAATGTCTCTGA+TGG | - | tig0043366:8418-8437 | Msa1463540:CDS | 35.0% | |
| TGAATTCCATCAGAGACATT+AGG | + | tig0043366:8427-8446 | None:intergenic | 35.0% | |
| ! | GTGTCGCATTTTACGAAATT+TGG | - | tig0043366:8467-8486 | Msa1463540:CDS | 35.0% |
| TATTGAACAGATGCAAAACG+AGG | - | tig0043366:8575-8594 | Msa1463540:CDS | 35.0% | |
| ATTGAACAGATGCAAAACGA+GGG | - | tig0043366:8576-8595 | Msa1463540:CDS | 35.0% | |
| ! | ATGCTCAACAAATTAGCTTC+AGG | - | tig0043366:8696-8715 | Msa1463540:intron | 35.0% |
| ! | CACTAGAACATTTTCAGATG+TGG | - | tig0043366:8719-8738 | Msa1463540:intron | 35.0% |
| ! | TTAATTTGAACACACGGGAT+AGG | + | tig0043366:8857-8876 | None:intergenic | 35.0% |
| !! | CCTGTTTAATTTGAACACAC+GGG | + | tig0043366:8862-8881 | None:intergenic | 35.0% |
| TAAAATTTGCGGAGTGATGT+TGG | - | tig0043366:8938-8957 | Msa1463540:intron | 35.0% | |
| ! | CCGATGGTTCTATTTGTAAA+AGG | - | tig0043366:8961-8980 | Msa1463540:intron | 35.0% |
| TTCTATTTGTAAAAGGCCAC+CGG | - | tig0043366:8968-8987 | Msa1463540:intron | 35.0% | |
| ATTCTCATTCCTTTGTGTTC+AGG | + | tig0043366:9014-9033 | None:intergenic | 35.0% | |
| GCATTGTAGGTAATGCTTAT+AGG | - | tig0043366:9084-9103 | Msa1463540:intron | 35.0% | |
| TCTTAACCATTCTTTGTGGA+GGG | + | tig0043366:9139-9158 | None:intergenic | 35.0% | |
| TGACTCTTAACCATTCTTTG+TGG | + | tig0043366:9143-9162 | None:intergenic | 35.0% | |
| ! | GTTAAGAGTCATGTTGATGA+GGG | - | tig0043366:9152-9171 | Msa1463540:intron | 35.0% |
| AACCGGTTAAAGGAAGAAAA+AGG | - | tig0043366:9234-9253 | Msa1463540:intron | 35.0% | |
| ! | CACCTTTTTCTTCCTTTAAC+CGG | + | tig0043366:9239-9258 | None:intergenic | 35.0% |
| GAAATAACAAACAGCTCTCT+AGG | - | tig0043366:9540-9559 | Msa1463540:five_prime_UTR | 35.0% | |
| GTCAAATAGTCGTAGCTAAT+AGG | - | tig0043366:9568-9587 | Msa1463540:five_prime_UTR | 35.0% | |
| CTGATACAATACAACCTTCA+AGG | + | tig0043366:9662-9681 | None:intergenic | 35.0% | |
| ! | ACAAGAATACTTGTTGAAGC+AGG | - | tig0043366:9689-9708 | Msa1463540:five_prime_UTR | 35.0% |
| ! | TGGCATTTCACAACTTGCTT+CGG | - | tig0043366:6556-6575 | Msa1463540:three_prime_UTR | 40.0% |
| TGTGATAACCGTTGTTCACT+AGG | + | tig0043366:6633-6652 | None:intergenic | 40.0% | |
| TATTCACTTGCGTCGTCTTA+GGG | + | tig0043366:6666-6685 | None:intergenic | 40.0% | |
| TTATTCACTTGCGTCGTCTT+AGG | + | tig0043366:6667-6686 | None:intergenic | 40.0% | |
| AAGACGACGCAAGTGAATAA+TGG | - | tig0043366:6667-6686 | Msa1463540:three_prime_UTR | 40.0% | |
| ATTGATATGAACCTTCCAGC+GGG | + | tig0043366:6750-6769 | None:intergenic | 40.0% | |
| !! | TATTAGGCTTTAGGCATCAC+TGG | + | tig0043366:6877-6896 | None:intergenic | 40.0% |
| TTATTTGGTTATTGGCCCAG+TGG | - | tig0043366:7089-7108 | Msa1463540:CDS | 40.0% | |
| ATAAACACACATACACAGGG+AGG | - | tig0043366:7127-7146 | Msa1463540:CDS | 40.0% | |
| TAAACACACATACACAGGGA+GGG | - | tig0043366:7128-7147 | Msa1463540:CDS | 40.0% | |
| GCTATTACAGTCTAGTGGTT+TGG | + | tig0043366:7209-7228 | None:intergenic | 40.0% | |
| ACCACTAGACTGTAATAGCA+AGG | - | tig0043366:7210-7229 | Msa1463540:CDS | 40.0% | |
| !! | TCCTTGCTATTACAGTCTAG+TGG | + | tig0043366:7214-7233 | None:intergenic | 40.0% |
| GCAACCAAATCAAGGTAAGA+AGG | + | tig0043366:7433-7452 | None:intergenic | 40.0% | |
| TAACACGAGCAACCAAATCA+AGG | + | tig0043366:7441-7460 | None:intergenic | 40.0% | |
| GAATAGTCTTCCCAATCAGA+AGG | + | tig0043366:7490-7509 | None:intergenic | 40.0% | |
| ! | GGTAGATCCTTCCTTTTCTT+TGG | + | tig0043366:7512-7531 | None:intergenic | 40.0% |
| AAGGTTGTGAATCCTGTATC+TGG | + | tig0043366:7533-7552 | None:intergenic | 40.0% | |
| TCACAACCTTCCTCAGAAAT+TGG | - | tig0043366:7543-7562 | Msa1463540:CDS | 40.0% | |
| CACAACCTTCCTCAGAAATT+GGG | - | tig0043366:7544-7563 | Msa1463540:CDS | 40.0% | |
| ! | TCACATTGTCAGCTTTTCCA+AGG | + | tig0043366:7669-7688 | None:intergenic | 40.0% |
| AGATGACTCTTCTCTACGAA+CGG | - | tig0043366:7747-7766 | Msa1463540:intron | 40.0% | |
| GGAGCCCATCTATAAACAAT+TGG | + | tig0043366:7811-7830 | None:intergenic | 40.0% | |
| ! | AAATGGGTCCAGTTTTGCTT+TGG | - | tig0043366:8249-8268 | Msa1463540:intron | 40.0% |
| ACACAATCAGCAATGGTACA+CGG | - | tig0043366:8652-8671 | Msa1463540:CDS | 40.0% | |
| GGTGAAAGGTAGAAGCAATT+TGG | + | tig0043366:8745-8764 | None:intergenic | 40.0% | |
| ! | GGCAGCTTGCTTGATTTAAT+TGG | + | tig0043366:8786-8805 | None:intergenic | 40.0% |
| CCCGTGTGTTCAAATTAAAC+AGG | - | tig0043366:8859-8878 | Msa1463540:intron | 40.0% | |
| AATTAAACAGGTCACGTCCT+TGG | - | tig0043366:8871-8890 | Msa1463540:intron | 40.0% | |
| !!! | CACCTCACTCTTTTTTCAAC+CGG | + | tig0043366:8990-9009 | None:intergenic | 40.0% |
| CTCTTAACCATTCTTTGTGG+AGG | + | tig0043366:9140-9159 | None:intergenic | 40.0% | |
| GGTTAAGAGTCATGTTGATG+AGG | - | tig0043366:9151-9170 | Msa1463540:intron | 40.0% | |
| TGTGGAATCATCTTGGATGA+TGG | - | tig0043366:9194-9213 | Msa1463540:intron | 40.0% | |
| ATCCACTTGTAGAAGACAAC+CGG | - | tig0043366:9217-9236 | Msa1463540:intron | 40.0% | |
| TGTAGAAGACAACCGGTTAA+AGG | - | tig0043366:9224-9243 | Msa1463540:intron | 40.0% | |
| !! | TAAAGGAAGAAAAAGGTGCC+AGG | - | tig0043366:9241-9260 | Msa1463540:intron | 40.0% |
| !! | AAAAGGTGCCAGGAACATAA+AGG | - | tig0043366:9251-9270 | Msa1463540:intron | 40.0% |
| !! | AAAGGTGCCAGGAACATAAA+GGG | - | tig0043366:9252-9271 | Msa1463540:intron | 40.0% |
| AACAATGTGCGAAGACGTAA+AGG | - | tig0043366:9446-9465 | Msa1463540:CDS | 40.0% | |
| ACAATGTGCGAAGACGTAAA+GGG | - | tig0043366:9447-9466 | Msa1463540:CDS | 40.0% | |
| AAGACGTAAAGGGTAGAAGA+AGG | - | tig0043366:9457-9476 | Msa1463540:CDS | 40.0% | |
| AAGGTCTTAATTCCAGCATC+TGG | - | tig0043366:9486-9505 | Msa1463540:exon | 40.0% | |
| ACTTGCATATATCCAGATGC+TGG | + | tig0043366:9501-9520 | None:intergenic | 40.0% | |
| ! | TACTTGTTGAAGCAGGAGTT+AGG | - | tig0043366:9696-9715 | Msa1463540:five_prime_UTR | 40.0% |
| ! | GGCATTTCACAACTTGCTTC+GGG | - | tig0043366:6557-6576 | Msa1463540:three_prime_UTR | 45.0% |
| GCACTTCTCCTAGTGAACAA+CGG | - | tig0043366:6622-6641 | Msa1463540:three_prime_UTR | 45.0% | |
| TGGTCGTCAACAGATTGAAG+CGG | - | tig0043366:6687-6706 | Msa1463540:three_prime_UTR | 45.0% | |
| ! | TGATGGCGTAGTGCTTAAAG+AGG | - | tig0043366:7014-7033 | Msa1463540:CDS | 45.0% |
| AAACACACATACACAGGGAG+GGG | - | tig0043366:7129-7148 | Msa1463540:CDS | 45.0% | |
| ! | GACATTTTACGTGGAATCCC+AGG | + | tig0043366:7179-7198 | None:intergenic | 45.0% |
| !!! | GGCTTTGAGGACATTTTACG+TGG | + | tig0043366:7188-7207 | None:intergenic | 45.0% |
| !! | AGTCTAGTGGTTTGGCTTTG+AGG | + | tig0043366:7201-7220 | None:intergenic | 45.0% |
| AGGAAGGATCTACCAGATAC+AGG | - | tig0043366:7518-7537 | Msa1463540:CDS | 45.0% | |
| AAACCACAACTATGCGACGA+GGG | + | tig0043366:7645-7664 | None:intergenic | 45.0% | |
| TAAACCACAACTATGCGACG+AGG | + | tig0043366:7646-7665 | None:intergenic | 45.0% | |
| CGCATAGTTGTGGTTTACCT+TGG | - | tig0043366:7649-7668 | Msa1463540:intron | 45.0% | |
| GATGACTCTTCTCTACGAAC+GGG | - | tig0043366:7748-7767 | Msa1463540:intron | 45.0% | |
| AACGGGAAGGTCATTGTTTC+AGG | - | tig0043366:7765-7784 | Msa1463540:intron | 45.0% | |
| ACTACAGGCCAAAGCAAAAC+TGG | + | tig0043366:8260-8279 | None:intergenic | 45.0% | |
| AACCCAATACACAGCACTAC+AGG | + | tig0043366:8275-8294 | None:intergenic | 45.0% | |
| CAGCTGAGATTCTGTTCTCA+GGG | + | tig0043366:8607-8626 | None:intergenic | 45.0% | |
| GCATGGAACACAATCAGCAA+TGG | - | tig0043366:8645-8664 | Msa1463540:CDS | 45.0% | |
| TCCAGTTTGTCATCTGTCAG+AGG | + | tig0043366:8807-8826 | None:intergenic | 45.0% | |
| AAACTGGATGAAGCTGACAG+TGG | - | tig0043366:8819-8838 | Msa1463540:intron | 45.0% | |
| GTGGTATCCTGAACTATCCA+AGG | + | tig0043366:8891-8910 | None:intergenic | 45.0% | |
| TGGATAGTTCAGGATACCAC+TGG | - | tig0043366:8891-8910 | Msa1463540:intron | 45.0% | |
| ATAGTTCAGGATACCACTGG+TGG | - | tig0043366:8894-8913 | Msa1463540:intron | 45.0% | |
| !!! | CTCACTCTTTTTTCAACCGG+TGG | + | tig0043366:8987-9006 | None:intergenic | 45.0% |
| ! | CACCGGTTGAAAAAAGAGTG+AGG | - | tig0043366:8985-9004 | Msa1463540:intron | 45.0% |
| CTTGGGTGATCTGATTGCTT+TGG | + | tig0043366:9051-9070 | None:intergenic | 45.0% | |
| ! | CTACATCATGGCTGGCATTT+TGG | + | tig0043366:9112-9131 | None:intergenic | 45.0% |
| AGAAGACCCTCCACAAAGAA+TGG | - | tig0043366:9130-9149 | Msa1463540:intron | 45.0% | |
| AACCGGTTGTCTTCTACAAG+TGG | + | tig0043366:9222-9241 | None:intergenic | 45.0% | |
| TTCTCCTCCCTTTATGTTCC+TGG | + | tig0043366:9262-9281 | None:intergenic | 45.0% | |
| ACGTAAAGGGTAGAAGAAGG+CGG | - | tig0043366:9460-9479 | Msa1463540:CDS | 45.0% | |
| TGTTGAAGCAGGAGTTAGGT+TGG | - | tig0043366:9700-9719 | Msa1463540:five_prime_UTR | 45.0% | |
| GGTCGTCAACAGATTGAAGC+GGG | - | tig0043366:6688-6707 | Msa1463540:three_prime_UTR | 50.0% | |
| !! | ATGATTCTAGCTTCTCCCGC+TGG | - | tig0043366:6732-6751 | Msa1463540:three_prime_UTR | 50.0% |
| ! | TTGAGCATGTGTTGGCCACT+GGG | + | tig0043366:7107-7126 | None:intergenic | 50.0% |
| ! | TTTGAGCATGTGTTGGCCAC+TGG | + | tig0043366:7108-7127 | None:intergenic | 50.0% |
| AACACACATACACAGGGAGG+GGG | - | tig0043366:7130-7149 | Msa1463540:CDS | 50.0% | |
| CCTTCCTCAGAAATTGGGTC+CGG | - | tig0043366:7549-7568 | Msa1463540:CDS | 50.0% | |
| CTTCCTCAGAAATTGGGTCC+GGG | - | tig0043366:7550-7569 | Msa1463540:CDS | 50.0% | |
| TTCCTCAGAAATTGGGTCCG+GGG | - | tig0043366:7551-7570 | Msa1463540:CDS | 50.0% | |
| AGCTGTGTCGCGTAGTAATC+TGG | - | tig0043366:7591-7610 | Msa1463540:intron | 50.0% | |
| GCTGTGTCGCGTAGTAATCT+GGG | - | tig0043366:7592-7611 | Msa1463540:intron | 50.0% | |
| AGAGCAAGACTCCAGCGTTA+TGG | - | tig0043366:7688-7707 | Msa1463540:intron | 50.0% | |
| ACTCTTCTCTACGAACGGGA+AGG | - | tig0043366:7752-7771 | Msa1463540:intron | 50.0% | |
| TGGCCTGTAGTGCTGTGTAT+TGG | - | tig0043366:8269-8288 | Msa1463540:intron | 50.0% | |
| GGCCTGTAGTGCTGTGTATT+GGG | - | tig0043366:8270-8289 | Msa1463540:intron | 50.0% | |
| ACTAGTGGCAAGCAAGAGAC+GGG | + | tig0043366:8374-8393 | None:intergenic | 50.0% | |
| GACTAGTGGCAAGCAAGAGA+CGG | + | tig0043366:8375-8394 | None:intergenic | 50.0% | |
| GCAGCTGAGATTCTGTTCTC+AGG | + | tig0043366:8608-8627 | None:intergenic | 50.0% | |
| CAATCAGCAATGGTACACGG+CGG | - | tig0043366:8655-8674 | Msa1463540:CDS | 50.0% | |
| TGCTTCTACCTTTCACCCAG+AGG | - | tig0043366:8748-8767 | Msa1463540:intron | 50.0% | |
| ACCTTTCACCCAGAGGAAAG+TGG | - | tig0043366:8755-8774 | Msa1463540:intron | 50.0% | |
| CCTTTCACCCAGAGGAAAGT+GGG | - | tig0043366:8756-8775 | Msa1463540:intron | 50.0% | |
| CTTTCACCCAGAGGAAAGTG+GGG | - | tig0043366:8757-8776 | Msa1463540:intron | 50.0% | |
| TGGTATCCCCACTTTCCTCT+GGG | + | tig0043366:8766-8785 | None:intergenic | 50.0% | |
| TTGGTATCCCCACTTTCCTC+TGG | + | tig0043366:8767-8786 | None:intergenic | 50.0% | |
| GCCTCTGACAGATGACAAAC+TGG | - | tig0043366:8803-8822 | Msa1463540:intron | 50.0% | |
| GTCACGTCCTTGGATAGTTC+AGG | - | tig0043366:8881-8900 | Msa1463540:intron | 50.0% | |
| ! | GTGAGGTGTCCTGAACACAA+AGG | - | tig0043366:9002-9021 | Msa1463540:intron | 50.0% |
| TGATCTGATTGCTTTGGCGG+CGG | + | tig0043366:9045-9064 | None:intergenic | 50.0% | |
| GGGTGATCTGATTGCTTTGG+CGG | + | tig0043366:9048-9067 | None:intergenic | 50.0% | |
| AGGGTCTTCTACATCATGGC+TGG | + | tig0043366:9120-9139 | None:intergenic | 50.0% | |
| GTGGAGGGTCTTCTACATCA+TGG | + | tig0043366:9124-9143 | None:intergenic | 50.0% | |
| !! | TTCTAGCTTCTCCCGCTGGA+AGG | - | tig0043366:6736-6755 | Msa1463540:three_prime_UTR | 55.0% |
| TGGTGACCTGGGATCAAACC+TGG | - | tig0043366:7158-7177 | Msa1463540:CDS | 55.0% | |
| GGTGACCTGGGATCAAACCT+GGG | - | tig0043366:7159-7178 | Msa1463540:CDS | 55.0% | |
| GGAATCCCAGGTTTGATCCC+AGG | + | tig0043366:7167-7186 | None:intergenic | 55.0% | |
| ! | CCGGACCCAATTTCTGAGGA+AGG | + | tig0043366:7552-7571 | None:intergenic | 55.0% |
| TCCTCAGAAATTGGGTCCGG+GGG | - | tig0043366:7552-7571 | Msa1463540:CDS | 55.0% | |
| AACTATGCGACGAGGGTCAG+TGG | + | tig0043366:7638-7657 | None:intergenic | 55.0% | |
| TGACCCTCGTCGCATAGTTG+TGG | - | tig0043366:7639-7658 | Msa1463540:intron | 55.0% | |
| CAAGACTCCAGCGTTATGGC+AGG | - | tig0043366:7692-7711 | Msa1463540:intron | 55.0% | |
| CTCCAGCGTTATGGCAGGAA+TGG | - | tig0043366:7697-7716 | Msa1463540:intron | 55.0% | |
| CTCCATTCCTGCCATAACGC+TGG | + | tig0043366:7702-7721 | None:intergenic | 55.0% | |
| CCCACTTTCCTCTGGGTGAA+AGG | + | tig0043366:8759-8778 | None:intergenic | 55.0% | |
| ATGAGTGGCACTACCACCAG+TGG | + | tig0043366:8910-8929 | None:intergenic | 55.0% | |
| GGTGCCAGGAACATAAAGGG+AGG | - | tig0043366:9255-9274 | Msa1463540:intron | 55.0% | |
| GGGTAGAAGAAGGCGGTTGA+AGG | - | tig0043366:9467-9486 | Msa1463540:CDS | 55.0% | |
| TACACAGGGAGGGGGAAGTG+TGG | - | tig0043366:7138-7157 | Msa1463540:CDS | 60.0% | |
| ! | AGGGGGAAGTGTGGTGACCT+GGG | - | tig0043366:7147-7166 | Msa1463540:CDS | 60.0% |
| ACCCCCGGACCCAATTTCTG+AGG | + | tig0043366:7556-7575 | None:intergenic | 60.0% | |
| ACTCCAAGCTCGTACACCCC+CGG | + | tig0043366:7571-7590 | None:intergenic | 60.0% | |
| TGCGGAGTGATGTTGGCCGA+TGG | - | tig0043366:8945-8964 | Msa1463540:intron | 60.0% | |
| ! | GAGGGGGAAGTGTGGTGACC+TGG | - | tig0043366:7146-7165 | Msa1463540:CDS | 65.0% |
| ! | GGTCCGGGGGTGTACGAGCT+TGG | - | tig0043366:7565-7584 | Msa1463540:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043366 | gene | 6460 | 9728 | 6460 | ID=Msa1463540;Name=Msa1463540 |
| tig0043366 | mRNA | 6460 | 9728 | 6460 | ID=Msa1463540-mRNA-1;Parent=Msa1463540;Name=Msa1463540-mRNA-1;_AED=0.05;_eAED=0.05;_QI=226|1|1|1|1|1|3|424|382 |
| tig0043366 | exon | 6460 | 7603 | 6460 | ID=Msa1463540-mRNA-1:exon:24105;Parent=Msa1463540-mRNA-1 |
| tig0043366 | exon | 8357 | 8713 | 8357 | ID=Msa1463540-mRNA-1:exon:24104;Parent=Msa1463540-mRNA-1 |
| tig0043366 | exon | 9431 | 9728 | 9431 | ID=Msa1463540-mRNA-1:exon:24103;Parent=Msa1463540-mRNA-1 |
| tig0043366 | five_prime_UTR | 9503 | 9728 | 9503 | ID=Msa1463540-mRNA-1:five_prime_utr;Parent=Msa1463540-mRNA-1 |
| tig0043366 | CDS | 9431 | 9502 | 9431 | ID=Msa1463540-mRNA-1:cds;Parent=Msa1463540-mRNA-1 |
| tig0043366 | CDS | 8357 | 8713 | 8357 | ID=Msa1463540-mRNA-1:cds;Parent=Msa1463540-mRNA-1 |
| tig0043366 | CDS | 6884 | 7603 | 6884 | ID=Msa1463540-mRNA-1:cds;Parent=Msa1463540-mRNA-1 |
| tig0043366 | three_prime_UTR | 6460 | 6883 | 6460 | ID=Msa1463540-mRNA-1:three_prime_utr;Parent=Msa1463540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
