Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463710 | AES67120.2 | 89.536 | 755 | 71 | 2 | 1 | 748 | 12 | 765 | 0.0 | 1286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463710 | sp|Q0WPH8|NEK5_ARATH | 50.201 | 249 | 111 | 6 | 502 | 743 | 700 | 942 | 3.46e-50 | 193 |
| Msa1463710 | sp|Q0WPH8|NEK5_ARATH | 35.309 | 388 | 237 | 14 | 1 | 381 | 253 | 633 | 6.36e-32 | 137 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463710 | G7IHI2 | 89.536 | 755 | 71 | 2 | 1 | 748 | 12 | 765 | 0.0 | 1286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0336210 | Msa1463710 | 0.958216 | 4.076221e-116 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463710 | MtrunA17_Chr2g0321841 | 89.536 | 755 | 71 | 2 | 1 | 748 | 249 | 1002 | 0.0 | 1282 |
| Msa1463710 | MtrunA17_Chr4g0025671 | 49.202 | 815 | 305 | 17 | 1 | 747 | 253 | 1026 | 0.0 | 560 |
| Msa1463710 | MtrunA17_Chr1g0190831 | 65.079 | 63 | 22 | 0 | 676 | 738 | 546 | 608 | 2.46e-17 | 86.3 |
| Msa1463710 | MtrunA17_Chr1g0185221 | 67.742 | 62 | 20 | 0 | 680 | 741 | 540 | 601 | 5.87e-17 | 85.1 |
| Msa1463710 | MtrunA17_Chr7g0260191 | 68.966 | 58 | 18 | 0 | 680 | 737 | 553 | 610 | 7.38e-17 | 84.7 |
| Msa1463710 | MtrunA17_Chr1g0173921 | 73.585 | 53 | 14 | 0 | 684 | 736 | 932 | 984 | 5.55e-16 | 82.4 |
| Msa1463710 | MtrunA17_Chr7g0258051 | 78.000 | 50 | 11 | 0 | 687 | 736 | 583 | 632 | 1.74e-15 | 80.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463710 | AT3G44200.2 | 50.201 | 249 | 111 | 6 | 502 | 743 | 700 | 942 | 3.52e-51 | 193 |
| Msa1463710 | AT3G44200.2 | 35.309 | 388 | 237 | 14 | 1 | 381 | 253 | 633 | 6.47e-33 | 137 |
| Msa1463710 | AT3G44200.1 | 50.201 | 249 | 111 | 6 | 502 | 743 | 700 | 942 | 3.52e-51 | 193 |
| Msa1463710 | AT3G44200.1 | 35.309 | 388 | 237 | 14 | 1 | 381 | 253 | 633 | 6.47e-33 | 137 |
| Msa1463710 | AT1G54510.5 | 72.414 | 58 | 16 | 0 | 680 | 737 | 359 | 416 | 5.38e-18 | 87.8 |
| Msa1463710 | AT1G54510.4 | 72.414 | 58 | 16 | 0 | 680 | 737 | 532 | 589 | 2.46e-17 | 86.7 |
| Msa1463710 | AT1G54510.2 | 72.414 | 58 | 16 | 0 | 680 | 737 | 532 | 589 | 2.46e-17 | 86.7 |
| Msa1463710 | AT1G54510.1 | 72.414 | 58 | 16 | 0 | 680 | 737 | 532 | 589 | 2.46e-17 | 86.7 |
| Msa1463710 | AT1G54510.3 | 72.414 | 58 | 16 | 0 | 680 | 737 | 532 | 589 | 2.46e-17 | 86.7 |
| Msa1463710 | AT3G63280.2 | 68.966 | 58 | 18 | 0 | 680 | 737 | 494 | 551 | 6.08e-17 | 85.5 |
| Msa1463710 | AT3G63280.3 | 68.966 | 58 | 18 | 0 | 680 | 737 | 494 | 551 | 6.08e-17 | 85.5 |
| Msa1463710 | AT3G63280.1 | 68.966 | 58 | 18 | 0 | 680 | 737 | 494 | 551 | 6.08e-17 | 85.5 |
| Msa1463710 | AT3G63280.4 | 64.516 | 62 | 22 | 0 | 676 | 737 | 544 | 605 | 7.24e-17 | 85.1 |
| Msa1463710 | AT3G04810.2 | 63.934 | 61 | 22 | 0 | 677 | 737 | 537 | 597 | 5.70e-16 | 82.4 |
| Msa1463710 | AT3G04810.1 | 63.934 | 61 | 22 | 0 | 677 | 737 | 537 | 597 | 5.70e-16 | 82.4 |
| Msa1463710 | AT3G04810.3 | 63.934 | 61 | 22 | 0 | 677 | 737 | 537 | 597 | 5.70e-16 | 82.4 |
| Msa1463710 | AT5G28290.1 | 65.000 | 60 | 21 | 0 | 678 | 737 | 499 | 558 | 3.91e-15 | 79.7 |
| Msa1463710 | AT5G28290.2 | 65.000 | 60 | 21 | 0 | 678 | 737 | 499 | 558 | 3.91e-15 | 79.7 |
| Msa1463710 | AT5G28290.3 | 65.000 | 60 | 21 | 0 | 678 | 737 | 484 | 543 | 4.08e-15 | 79.3 |
| Msa1463710 | AT3G20860.1 | 67.308 | 52 | 17 | 0 | 685 | 736 | 351 | 402 | 1.45e-12 | 70.9 |
| Msa1463710 | AT3G12200.3 | 61.538 | 52 | 20 | 0 | 685 | 736 | 438 | 489 | 2.28e-11 | 67.4 |
| Msa1463710 | AT3G12200.4 | 61.538 | 52 | 20 | 0 | 685 | 736 | 444 | 495 | 2.37e-11 | 67.4 |
| Msa1463710 | AT3G12200.2 | 61.538 | 52 | 20 | 0 | 685 | 736 | 520 | 571 | 2.43e-11 | 67.4 |
| Msa1463710 | AT3G12200.1 | 61.538 | 52 | 20 | 0 | 685 | 736 | 510 | 561 | 2.50e-11 | 67.4 |
Find 172 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTTCTTGTAAAACTTTC+TGG | 0.056366 | tig0043592:+3712 | Msa1463710:intergenic |
| CTCATTCTTCAGTGCCTTTA+TGG | 0.082279 | tig0043592:-2910 | Msa1463710:three_prime_UTR |
| CTCAAATACTATTGATAATT+TGG | 0.084649 | tig0043592:-3424 | Msa1463710:CDS |
| CAGAGCAATTTGAAGATTTA+AGG | 0.096427 | tig0043592:+3463 | Msa1463710:intergenic |
| AAACATTCACTTTCCATTTC+TGG | 0.153915 | tig0043592:-3909 | Msa1463710:CDS |
| ACTTAAGCCACCCTCATTTC+TGG | 0.158535 | tig0043592:-4513 | Msa1463710:CDS |
| ACTTTATGAGGCCTATTATT+TGG | 0.161911 | tig0043592:+3849 | Msa1463710:intergenic |
| AACCTCCTGTTTATCTGTTT+TGG | 0.180009 | tig0043592:+5067 | Msa1463710:intergenic |
| AAATCAGATTTCGGTGTTAA+TGG | 0.223289 | tig0043592:-4873 | Msa1463710:CDS |
| TTCTCAGTTGATTCCATTAC+TGG | 0.231813 | tig0043592:+3570 | Msa1463710:intergenic |
| TGAACATAAGGCTGCAAATA+AGG | 0.242452 | tig0043592:+5365 | Msa1463710:intergenic |
| TCTTTATCATTTGCTGCATT+TGG | 0.249403 | tig0043592:+4461 | Msa1463710:intergenic |
| GGACCTGATGAAAATATTTC+TGG | 0.250986 | tig0043592:-4155 | Msa1463710:CDS |
| CTATTATTTGGCAAGCTTAC+TGG | 0.257808 | tig0043592:+3861 | Msa1463710:intergenic |
| AATAGTTCGTGTAGTGAAAA+AGG | 0.295155 | tig0043592:-5257 | Msa1463710:CDS |
| TTGTTATATTTAGCGAAATC+AGG | 0.305724 | tig0043592:+3330 | Msa1463710:intergenic |
| AATAAACACACACATGAATA+TGG | 0.312518 | tig0043592:-2792 | Msa1463710:three_prime_UTR |
| TGGTTGGCCAAGAGTCTAAA+AGG | 0.312931 | tig0043592:-3108 | Msa1463710:CDS |
| TAGTAAGGTTTCTTTATTCT+TGG | 0.319864 | tig0043592:-3054 | Msa1463710:three_prime_UTR |
| TGATTAAAACTCCCATGTTC+AGG | 0.329512 | tig0043592:+4212 | Msa1463710:intergenic |
| CCTCAAGGGAGACAGCTATT+TGG | 0.331225 | tig0043592:-3128 | Msa1463710:CDS |
| ATTTGTTGCGATTGGCCTAA+TGG | 0.339614 | tig0043592:-2829 | Msa1463710:three_prime_UTR |
| TACTTTCTCATTACGAGTTA+TGG | 0.342562 | tig0043592:+4097 | Msa1463710:intergenic |
| TCATCTTCAGTCTCTGTTCA+AGG | 0.344257 | tig0043592:-4290 | Msa1463710:CDS |
| TTGAGTATGCGTTAGCCATT+AGG | 0.353868 | tig0043592:+2814 | Msa1463710:intergenic |
| CAGTAAGCTTGCCAAATAAT+AGG | 0.355017 | tig0043592:-3860 | Msa1463710:CDS |
| AGAGCAATTTGAAGATTTAA+GGG | 0.358746 | tig0043592:+3464 | Msa1463710:intergenic |
| TTTGGCTGTGCAGAAACTTC+AGG | 0.365199 | tig0043592:+4557 | Msa1463710:intergenic |
| TCTGCTACTACTTGTTTGAT+AGG | 0.366933 | tig0043592:+4581 | Msa1463710:intergenic |
| TTCTGAAAAGTTGGTGTAAA+CGG | 0.371230 | tig0043592:+4122 | Msa1463710:intergenic |
| AGTAGGGGACGTAGTTAGTA+AGG | 0.378318 | tig0043592:-3069 | Msa1463710:exon |
| AAAGTTGGCACCTCTACATT+AGG | 0.381919 | tig0043592:+4825 | Msa1463710:intergenic |
| CAACATTAGATTTGTGTTCA+AGG | 0.383815 | tig0043592:+5030 | Msa1463710:intergenic |
| AAGTGCATCCGCTCTCTGTT+TGG | 0.387223 | tig0043592:+3245 | Msa1463710:intergenic |
| CTTAAGCCACCCTCATTTCT+GGG | 0.391533 | tig0043592:-4512 | Msa1463710:CDS |
| TTAACACCGAAATCTGATTT+CGG | 0.398389 | tig0043592:+4858 | Msa1463710:intergenic |
| GATGTCTCATCTTAGCCTCC+TGG | 0.404571 | tig0043592:+4414 | Msa1463710:intergenic |
| GCAGTTGTTCTCAAGCCCTT+TGG | 0.409875 | tig0043592:-3165 | Msa1463710:CDS |
| CAAACAACTACATCTGATTC+CGG | 0.411034 | tig0043592:-4020 | Msa1463710:CDS |
| TACTATTTACAGCACCATAA+AGG | 0.411899 | tig0043592:+2896 | Msa1463710:intergenic |
| AAATTTCCGAAATCAGATTT+CGG | 0.413272 | tig0043592:-4882 | Msa1463710:CDS |
| TTTGATTTCTTGTGTGACTT+TGG | 0.418815 | tig0043592:+3977 | Msa1463710:intergenic |
| TTCATCAGGCTCCCTCTCAT+TGG | 0.418996 | tig0043592:+4933 | Msa1463710:intergenic |
| CAATGCCAAAACAGATAAAC+AGG | 0.423118 | tig0043592:-5090 | Msa1463710:CDS |
| CAAGAGTCTAAAAGGATTGA+TGG | 0.429192 | tig0043592:-3100 | Msa1463710:CDS |
| TTTCTCTACCGGGCATGATA+AGG | 0.429286 | tig0043592:+5114 | Msa1463710:intergenic |
| AATGCCAGAAAAGGAATCAT+TGG | 0.429595 | tig0043592:-3280 | Msa1463710:CDS |
| TTTGGCAGGCTAACTTTATG+AGG | 0.436653 | tig0043592:+3837 | Msa1463710:intergenic |
| AGAGCTATTTCTTTCTCTAC+CGG | 0.437249 | tig0043592:+5103 | Msa1463710:intergenic |
| ATAAGGGTGCTTTAAGATAT+CGG | 0.437476 | tig0043592:+5382 | Msa1463710:intergenic |
| AAGGTTTCTTTATTCTTGGT+TGG | 0.440792 | tig0043592:-3050 | Msa1463710:three_prime_UTR |
| AAACAGATAAACAGGAGGTT+AGG | 0.444849 | tig0043592:-5082 | Msa1463710:CDS |
| TTTGCTGCAGCAAAATAGAT+TGG | 0.444854 | tig0043592:-3196 | Msa1463710:CDS |
| GTTGAGATGCACATAAGCTT+TGG | 0.450902 | tig0043592:+3819 | Msa1463710:intergenic |
| AAGCTTATGTGCATCTCAAC+TGG | 0.451241 | tig0043592:-3816 | Msa1463710:CDS |
| GTTCTCAAGCCCTTTGGAAA+AGG | 0.451584 | tig0043592:-3159 | Msa1463710:CDS |
| GATAGTTAAGAATGCAAAGA+TGG | 0.452260 | tig0043592:-5009 | Msa1463710:CDS |
| GAACAATATTGATGAACATA+AGG | 0.453885 | tig0043592:+5353 | Msa1463710:intergenic |
| GATTGATGGTTGAGGAAAGT+AGG | 0.456243 | tig0043592:-3086 | Msa1463710:CDS |
| GAACATAAGGCTGCAAATAA+GGG | 0.456479 | tig0043592:+5366 | Msa1463710:intergenic |
| TGTTTCTAGAGAGCCTTTGA+AGG | 0.461345 | tig0043592:-4363 | Msa1463710:CDS |
| ATATACAGCCAGCCTTCATC+AGG | 0.462228 | tig0043592:+4919 | Msa1463710:intergenic |
| TCATTCTGCAAAACGAATCC+AGG | 0.465479 | tig0043592:-4799 | Msa1463710:CDS |
| GCAACAGAAAGACCAGCTTC+TGG | 0.465675 | tig0043592:-3666 | Msa1463710:CDS |
| TGCATTTGGCATATCATGCC+CGG | 0.465754 | tig0043592:+4475 | Msa1463710:intergenic |
| ATTGATGGTTGAGGAAAGTA+GGG | 0.467294 | tig0043592:-3085 | Msa1463710:CDS |
| TTTAATCACACTGAAATTGT+GGG | 0.470350 | tig0043592:-4197 | Msa1463710:CDS |
| CAGAGAGCGGATGCACTTGA+AGG | 0.470476 | tig0043592:-3240 | Msa1463710:CDS |
| CATCGAGAGCTCGGGGAAGA+TGG | 0.475367 | tig0043592:+3643 | Msa1463710:intergenic |
| TGAAGAGGAAATGCCAGAAA+AGG | 0.476529 | tig0043592:-3289 | Msa1463710:CDS |
| GGATGACATCATCGAGAGCT+CGG | 0.483712 | tig0043592:+3634 | Msa1463710:intergenic |
| ATCACATACTTCAAAACATC+AGG | 0.483771 | tig0043592:-4775 | Msa1463710:CDS |
| CTTATTGCGTCCCAGAAATG+AGG | 0.492643 | tig0043592:+4502 | Msa1463710:intergenic |
| GATGGGACCAAAACATGAAA+AGG | 0.492866 | tig0043592:-4991 | Msa1463710:CDS |
| TTCATCAGGTCCACTACTGT+TGG | 0.493321 | tig0043592:+4166 | Msa1463710:intergenic |
| AGATGAAACAGAATTGTTGC+TGG | 0.494410 | tig0043592:+4307 | Msa1463710:intergenic |
| CGGGGAAGATGGCCAGAAGC+TGG | 0.496088 | tig0043592:+3654 | Msa1463710:intergenic |
| GATTTAGAAATGAGAAATGT+GGG | 0.496580 | tig0043592:-3498 | Msa1463710:CDS |
| TGAGTGATCCAGAGTTAACC+TGG | 0.496820 | tig0043592:+4070 | Msa1463710:intergenic |
| GATGACATCATCGAGAGCTC+GGG | 0.500494 | tig0043592:+3635 | Msa1463710:intergenic |
| CGTTTCAAAAGCAGCACCAA+AGG | 0.502236 | tig0043592:-5210 | Msa1463710:CDS |
| GTTATGGTATTCTGAAAAGT+TGG | 0.504816 | tig0043592:+4113 | Msa1463710:intergenic |
| GCATCTTGCTCTTCAACGCC+AGG | 0.504860 | tig0043592:+3360 | Msa1463710:intergenic |
| GAGGGTGGCTTAAGTAGGCT+TGG | 0.506069 | tig0043592:+4521 | Msa1463710:intergenic |
| CTTGAATTAAGAGAACAAAC+AGG | 0.508307 | tig0043592:-2963 | Msa1463710:three_prime_UTR |
| AACTGGTGATGACAAATTCA+TGG | 0.513357 | tig0043592:-3799 | Msa1463710:CDS |
| AGTAAGTCCCAGGTTAACTC+TGG | 0.514549 | tig0043592:-4078 | Msa1463710:CDS |
| TGTTATATTTAGCGAAATCA+GGG | 0.515384 | tig0043592:+3331 | Msa1463710:intergenic |
| ATGCAGCAAATGATAAAGAA+AGG | 0.517256 | tig0043592:-4457 | Msa1463710:CDS |
| AATGAGAGGGAGCCTGATGA+AGG | 0.518083 | tig0043592:-4949 | Msa1463710:CDS |
| CAAGCCCTTTGGAAAAGGTA+AGG | 0.518547 | tig0043592:-3154 | Msa1463710:CDS |
| AGATGCACATAAGCTTTGGC+AGG | 0.522574 | tig0043592:+3823 | Msa1463710:intergenic |
| TTATACGCCATAGCAGTTAC+CGG | 0.522768 | tig0043592:-3608 | Msa1463710:CDS |
| GGCATTTCCTCTTCAGCTGT+AGG | 0.526388 | tig0043592:+3297 | Msa1463710:intergenic |
| TAGCCTTCCTACAGCTGAAG+AGG | 0.526685 | tig0043592:-3304 | Msa1463710:CDS |
| GCTGGTTGTTTGCATTCCGT+TGG | 0.528845 | tig0043592:+4325 | Msa1463710:intergenic |
| GTTTGTTCTCTTAATTCAAG+TGG | 0.529657 | tig0043592:+2966 | Msa1463710:intergenic |
| GCCATAGCAGTTACCGGGTA+GGG | 0.530520 | tig0043592:-3602 | Msa1463710:CDS |
| CTACTTTCAAAAGCCTTCAA+AGG | 0.530710 | tig0043592:+4350 | Msa1463710:intergenic |
| CTTGAACACAAATCTAATGT+TGG | 0.532695 | tig0043592:-5047 | Msa1463710:CDS |
| TTTGAAGATTTAAGGGACAA+AGG | 0.533872 | tig0043592:+3471 | Msa1463710:intergenic |
| TACACTCATCAACGTTGTAA+AGG | 0.534911 | tig0043592:-3523 | Msa1463710:CDS |
| TTTACAAGAAGAGAAGGGAA+TGG | 0.535007 | tig0043592:-3703 | Msa1463710:CDS |
| TGATTTAGAAATGAGAAATG+TGG | 0.537615 | tig0043592:-3499 | Msa1463710:CDS |
| ATCACTGACCTTATCATGCC+CGG | 0.539865 | tig0043592:-5140 | Msa1463710:CDS |
| ATGTCTCATCTTAGCCTCCT+GGG | 0.542261 | tig0043592:+4415 | Msa1463710:intergenic |
| CTGGGACGCAATAAGCAAGC+CGG | 0.547616 | tig0043592:-4494 | Msa1463710:CDS |
| TGGGACGCAATAAGCAAGCC+GGG | 0.548530 | tig0043592:-4493 | Msa1463710:CDS |
| GAAATGAGGGTGGCTTAAGT+AGG | 0.549253 | tig0043592:+4516 | Msa1463710:intergenic |
| AGTAATGGAATCAACTGAGA+AGG | 0.550186 | tig0043592:-3568 | Msa1463710:CDS |
| GAGCTATTTCTTTCTCTACC+GGG | 0.551674 | tig0043592:+5104 | Msa1463710:intergenic |
| ACATGTGGCAGATGACCGTT+AGG | 0.553212 | tig0043592:+4383 | Msa1463710:intergenic |
| TCCCTACCCGGTAACTGCTA+TGG | 0.553321 | tig0043592:+3601 | Msa1463710:intergenic |
| AGAGGGAGCCTGATGAAGGC+TGG | 0.555078 | tig0043592:-4945 | Msa1463710:CDS |
| GATTAAAACTCCCATGTTCA+GGG | 0.557748 | tig0043592:+4213 | Msa1463710:intergenic |
| AACTGCTATGGCGTATAACA+TGG | 0.559388 | tig0043592:+3613 | Msa1463710:intergenic |
| TTTGGTGTAGGTTCTATCAT+CGG | 0.559432 | tig0043592:+4641 | Msa1463710:intergenic |
| ATTAAAACTCCCATGTTCAG+GGG | 0.561553 | tig0043592:+4214 | Msa1463710:intergenic |
| TTTCCTCTTCAGCTGTAGGA+AGG | 0.562670 | tig0043592:+3301 | Msa1463710:intergenic |
| GGTGGCTTAAGTAGGCTTGG+AGG | 0.564875 | tig0043592:+4524 | Msa1463710:intergenic |
| AGGGAGTGATCTTCCAGTAA+TGG | 0.565681 | tig0043592:-3583 | Msa1463710:CDS |
| TCTAAAAGGATTGATGGTTG+AGG | 0.567989 | tig0043592:-3094 | Msa1463710:CDS |
| TACATCTGATTCCGGTGAGT+GGG | 0.569362 | tig0043592:-4012 | Msa1463710:CDS |
| GCTGCAGCAAAATAGATTGG+AGG | 0.571472 | tig0043592:-3193 | Msa1463710:CDS |
| CTGGAAGATCACTCCCTACC+CGG | 0.572422 | tig0043592:+3589 | Msa1463710:intergenic |
| GTTTCAAAAGCAGCACCAAA+GGG | 0.572935 | tig0043592:-5209 | Msa1463710:CDS |
| GGATCACTTGCCAACAGTAG+TGG | 0.572970 | tig0043592:-4176 | Msa1463710:CDS |
| ATAGTTAAGAATGCAAAGAT+GGG | 0.573852 | tig0043592:-5008 | Msa1463710:CDS |
| TCAAGTATTTCTGAACATCC+TGG | 0.576432 | tig0043592:-3378 | Msa1463710:CDS |
| AAGGGAGACAGCTATTTGGT+TGG | 0.577031 | tig0043592:-3124 | Msa1463710:CDS |
| GAGGTAGACCTGTCATCGAT+TGG | 0.581199 | tig0043592:-5170 | Msa1463710:CDS |
| AGACATCATCGGTTGCCTAA+CGG | 0.582304 | tig0043592:-4398 | Msa1463710:CDS |
| AGAGAGCGGATGCACTTGAA+GGG | 0.587056 | tig0043592:-3239 | Msa1463710:CDS |
| CTACATCTGATTCCGGTGAG+TGG | 0.594165 | tig0043592:-4013 | Msa1463710:CDS |
| TCTTGTGTGACTTTGGCAGA+CGG | 0.594755 | tig0043592:+3984 | Msa1463710:intergenic |
| AGACGGAACATCCCACTCAC+CGG | 0.596350 | tig0043592:+4001 | Msa1463710:intergenic |
| GAGATGAGTTCTCCAATGAG+AGG | 0.596694 | tig0043592:-4963 | Msa1463710:CDS |
| AGATGAGTTCTCCAATGAGA+GGG | 0.598649 | tig0043592:-4962 | Msa1463710:CDS |
| AGATACAAATAAAATAGCCC+AGG | 0.599130 | tig0043592:-4432 | Msa1463710:CDS |
| TGGTTTGAAGCCTAATGTAG+AGG | 0.600008 | tig0043592:-4853 | Msa1463710:CDS |
| GAAAAGGTAAGGTCTCCTCA+AGG | 0.606367 | tig0043592:-3143 | Msa1463710:CDS |
| TACAAATAAAATAGCCCAGG+AGG | 0.608281 | tig0043592:-4429 | Msa1463710:CDS |
| GGAGTTACAAACGTAGATGT+TGG | 0.608825 | tig0043592:-3546 | Msa1463710:CDS |
| GTAATGAGAAAGTAAGTCCC+AGG | 0.608907 | tig0043592:-4088 | Msa1463710:CDS |
| GGTGGTGTCACCTTCTGTCG+AGG | 0.610399 | tig0043592:+4611 | Msa1463710:intergenic |
| CGCCATAGCAGTTACCGGGT+AGG | 0.615638 | tig0043592:-3603 | Msa1463710:CDS |
| CCAAATAGCTGTCTCCCTTG+AGG | 0.618117 | tig0043592:+3128 | Msa1463710:intergenic |
| CATTCTGCAAAACGAATCCA+GGG | 0.622466 | tig0043592:-4798 | Msa1463710:CDS |
| AAAAGGTAAGGTCTCCTCAA+GGG | 0.624519 | tig0043592:-3142 | Msa1463710:CDS |
| TTATTGCGTCCCAGAAATGA+GGG | 0.635494 | tig0043592:+4503 | Msa1463710:intergenic |
| GTAATGGAATCAACTGAGAA+GGG | 0.635839 | tig0043592:-3567 | Msa1463710:CDS |
| AGGCTAAGATGAGACATCAT+CGG | 0.641986 | tig0043592:-4409 | Msa1463710:CDS |
| TAAATCTTCCAAACAGAGAG+CGG | 0.642979 | tig0043592:-3253 | Msa1463710:CDS |
| TATACGCCATAGCAGTTACC+GGG | 0.646342 | tig0043592:-3607 | Msa1463710:CDS |
| AAAGGCTCTCTAGAAACATG+TGG | 0.658063 | tig0043592:+4368 | Msa1463710:intergenic |
| TGATGACAAATTCATGGTGA+GGG | 0.659209 | tig0043592:-3793 | Msa1463710:CDS |
| ATGTTGGATCTAAGCAAGCA+AGG | 0.669645 | tig0043592:-5031 | Msa1463710:CDS |
| AAAAGTTGGTGTAAACGGAG+AGG | 0.671095 | tig0043592:+4127 | Msa1463710:intergenic |
| TTAAAACTCCCATGTTCAGG+GGG | 0.672609 | tig0043592:+4215 | Msa1463710:intergenic |
| GTGATGACAAATTCATGGTG+AGG | 0.673342 | tig0043592:-3794 | Msa1463710:CDS |
| ATGACATCATCGAGAGCTCG+GGG | 0.674350 | tig0043592:+3636 | Msa1463710:intergenic |
| TGATTTCGGAAATTTACACA+AGG | 0.675327 | tig0043592:+4872 | Msa1463710:intergenic |
| GAGTGATCCAGAGTTAACCT+GGG | 0.687311 | tig0043592:+4071 | Msa1463710:intergenic |
| TGCCAAAACAGATAAACAGG+AGG | 0.687360 | tig0043592:-5087 | Msa1463710:CDS |
| AGGAGCAATTTCAGCCACTG+AGG | 0.690173 | tig0043592:+3761 | Msa1463710:intergenic |
| TTGCGTCCCAGAAATGAGGG+TGG | 0.690369 | tig0043592:+4506 | Msa1463710:intergenic |
| ACTTGTTTGATAGGACCACA+TGG | 0.709845 | tig0043592:+4590 | Msa1463710:intergenic |
| TTGATGGTTGAGGAAAGTAG+GGG | 0.721472 | tig0043592:-3084 | Msa1463710:CDS |
| CAGAAGGTGACACCACCATG+TGG | 0.741956 | tig0043592:-4605 | Msa1463710:CDS |
| GGGTGATGACAAAATCACTG+AGG | 0.760210 | tig0043592:-5189 | Msa1463710:CDS |
| GAGGGAAAGAGTGTCCTCAG+TGG | 0.761042 | tig0043592:-3775 | Msa1463710:CDS |
| TGTTTGATAGGACCACATGG+TGG | 0.804449 | tig0043592:+4593 | Msa1463700:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAACAAATATATCATTCTAA+TGG | + | tig0043592:3452-3471 | Msa1463710:intergenic | 15.0% |
| !!! | ATTTTAGTAGATATATTCAC+AGG | + | tig0043592:4438-4457 | Msa1463710:intergenic | 20.0% |
| !!! | CTCAAATACTATTGATAATT+TGG | - | tig0043592:4752-4771 | Msa1463710:intron | 20.0% |
| !!! | TATTTTTAATTTGTTGCGAT+TGG | - | tig0043592:5339-5358 | Msa1463710:CDS | 20.0% |
| ! | GAACAATATTGATGAACATA+AGG | + | tig0043592:2826-2845 | Msa1396410:intergenic | 25.0% |
| ! | ATAGTTAAGAATGCAAAGAT+GGG | - | tig0043592:3186-3205 | Msa1463710:CDS | 25.0% |
| !! | TCTTTAACCTTTTCATGTTT+TGG | + | tig0043592:3213-3232 | Msa1463710:intergenic | 25.0% |
| ! | AAATTTCCGAAATCAGATTT+CGG | - | tig0043592:3312-3331 | Msa1463710:CDS | 25.0% |
| ! | AAATAAGTTTCAGTGTCATA+GGG | + | tig0043592:3487-3506 | Msa1463710:intergenic | 25.0% |
| !! | TTTTAATCACACTGAAATTG+TGG | - | tig0043592:3978-3997 | Msa1463710:CDS | 25.0% |
| ! | TTTAATCACACTGAAATTGT+GGG | - | tig0043592:3979-3998 | Msa1463710:CDS | 25.0% |
| ! | TTTCCTTACAAAAATCTTGA+AGG | + | tig0043592:4227-4246 | Msa1463710:intergenic | 25.0% |
| !! | TCAAGATTTTTGTAAGGAAA+TGG | - | tig0043592:4227-4246 | Msa1463710:CDS | 25.0% |
| !! | AAAGTTTTACAAGAAGAGAA+GGG | - | tig0043592:4468-4487 | Msa1463710:CDS | 25.0% |
| ! | TGATTTAGAAATGAGAAATG+TGG | - | tig0043592:4677-4696 | Msa1463710:intron | 25.0% |
| ! | GATTTAGAAATGAGAAATGT+GGG | - | tig0043592:4678-4697 | Msa1463710:intron | 25.0% |
| ! | AGAGCAATTTGAAGATTTAA+GGG | + | tig0043592:4715-4734 | Msa1463710:intergenic | 25.0% |
| ! | TGTTATATTTAGCGAAATCA+GGG | + | tig0043592:4848-4867 | Msa1463710:intergenic | 25.0% |
| ! | TTGTTATATTTAGCGAAATC+AGG | + | tig0043592:4849-4868 | Msa1463710:intergenic | 25.0% |
| ! | TAGTAAGGTTTCTTTATTCT+TGG | - | tig0043592:5122-5141 | Msa1463710:CDS | 25.0% |
| !!! | GTCTTTTCTTGTTTTGTTTT+TGG | - | tig0043592:5169-5188 | Msa1463710:CDS | 25.0% |
| ! | AATAAACACACACATGAATA+TGG | - | tig0043592:5384-5403 | Msa1463710:CDS | 25.0% |
| !! | ATAAGGGTGCTTTAAGATAT+CGG | + | tig0043592:2797-2816 | Msa1396410:intergenic | 30.0% |
| AATAGTTCGTGTAGTGAAAA+AGG | - | tig0043592:2937-2956 | Msa1463710:three_prime_UTR | 30.0% | |
| CAACATTAGATTTGTGTTCA+AGG | + | tig0043592:3149-3168 | Msa1463710:intergenic | 30.0% | |
| CTTGAACACAAATCTAATGT+TGG | - | tig0043592:3147-3166 | Msa1463710:CDS | 30.0% | |
| GATAGTTAAGAATGCAAAGA+TGG | - | tig0043592:3185-3204 | Msa1463710:CDS | 30.0% | |
| TGATTTCGGAAATTTACACA+AGG | + | tig0043592:3307-3326 | Msa1463710:intergenic | 30.0% | |
| TTAACACCGAAATCTGATTT+CGG | + | tig0043592:3321-3340 | Msa1463710:intergenic | 30.0% | |
| !! | AAATCAGATTTCGGTGTTAA+TGG | - | tig0043592:3321-3340 | Msa1463710:CDS | 30.0% |
| ATCACATACTTCAAAACATC+AGG | - | tig0043592:3419-3438 | Msa1463710:CDS | 30.0% | |
| GAAATAAGTTTCAGTGTCAT+AGG | + | tig0043592:3488-3507 | Msa1463710:intergenic | 30.0% | |
| ! | TCTTTATCATTTGCTGCATT+TGG | + | tig0043592:3718-3737 | Msa1463710:intergenic | 30.0% |
| ATGCAGCAAATGATAAAGAA+AGG | - | tig0043592:3719-3738 | Msa1463710:CDS | 30.0% | |
| AGATACAAATAAAATAGCCC+AGG | - | tig0043592:3744-3763 | Msa1463710:CDS | 30.0% | |
| !! | TTCTGAAAAGTTGGTGTAAA+CGG | + | tig0043592:4057-4076 | Msa1463710:intergenic | 30.0% |
| ! | GTTATGGTATTCTGAAAAGT+TGG | + | tig0043592:4066-4085 | Msa1463710:intergenic | 30.0% |
| TACTTTCTCATTACGAGTTA+TGG | + | tig0043592:4082-4101 | Msa1463710:intergenic | 30.0% | |
| ! | TTTGATTTCTTGTGTGACTT+TGG | + | tig0043592:4202-4221 | Msa1463710:intergenic | 30.0% |
| ! | AGACCTTCAAGATTTTTGTA+AGG | - | tig0043592:4221-4240 | Msa1463710:CDS | 30.0% |
| AAACATTCACTTTCCATTTC+TGG | - | tig0043592:4267-4286 | Msa1463710:CDS | 30.0% | |
| !!! | AACTGACTTTTTTCCAGAAA+TGG | + | tig0043592:4283-4302 | Msa1463710:intergenic | 30.0% |
| ACTTTATGAGGCCTATTATT+TGG | + | tig0043592:4330-4349 | Msa1463710:intergenic | 30.0% | |
| TCTCTTCTTGTAAAACTTTC+TGG | + | tig0043592:4467-4486 | Msa1463710:intergenic | 30.0% | |
| ! | GAAAGTTTTACAAGAAGAGA+AGG | - | tig0043592:4467-4486 | Msa1463710:CDS | 30.0% |
| TTTGAAGATTTAAGGGACAA+AGG | + | tig0043592:4708-4727 | Msa1463710:intergenic | 30.0% | |
| CAGAGCAATTTGAAGATTTA+AGG | + | tig0043592:4716-4735 | Msa1463710:intergenic | 30.0% | |
| AAGGTTTCTTTATTCTTGGT+TGG | - | tig0043592:5126-5145 | Msa1463710:CDS | 30.0% | |
| GTTTGTTCTCTTAATTCAAG+TGG | + | tig0043592:5213-5232 | Msa1463710:intergenic | 30.0% | |
| CTTGAATTAAGAGAACAAAC+AGG | - | tig0043592:5213-5232 | Msa1463710:CDS | 30.0% | |
| TACTATTTACAGCACCATAA+AGG | + | tig0043592:5283-5302 | Msa1463710:intergenic | 30.0% | |
| GAACATAAGGCTGCAAATAA+GGG | + | tig0043592:2813-2832 | Msa1396410:intergenic | 35.0% | |
| TGAACATAAGGCTGCAAATA+AGG | + | tig0043592:2814-2833 | Msa1396410:intergenic | 35.0% | |
| !!! | ACAGCAAAAATTGGCTTTTC+AGG | + | tig0043592:2877-2896 | Msa1396410:intergenic | 35.0% |
| GGAACATGAACAGCAAAAAT+TGG | + | tig0043592:2886-2905 | Msa1396410:intergenic | 35.0% | |
| !!! | ACTTTTTTCACTTTCTGCCA+TGG | + | tig0043592:2917-2936 | Msa1463710:intergenic | 35.0% |
| !! | AGAGCTATTTCTTTCTCTAC+CGG | + | tig0043592:3076-3095 | Msa1463710:intergenic | 35.0% |
| CAATGCCAAAACAGATAAAC+AGG | - | tig0043592:3104-3123 | Msa1463710:CDS | 35.0% | |
| ! | AACCTCCTGTTTATCTGTTT+TGG | + | tig0043592:3112-3131 | Msa1463710:intergenic | 35.0% |
| AAACAGATAAACAGGAGGTT+AGG | - | tig0043592:3112-3131 | Msa1463710:CDS | 35.0% | |
| ! | GATTCGTTTTGCAGAATGAA+GGG | + | tig0043592:3394-3413 | Msa1463710:intergenic | 35.0% |
| ! | TTTGGTGTAGGTTCTATCAT+CGG | + | tig0043592:3538-3557 | Msa1463710:intergenic | 35.0% |
| !!! | TTCTGTCGAGGTTTAGTTTT+TGG | + | tig0043592:3556-3575 | Msa1463710:intergenic | 35.0% |
| AAAAACTAAACCTCGACAGA+AGG | - | tig0043592:3555-3574 | Msa1463710:CDS | 35.0% | |
| TCTGCTACTACTTGTTTGAT+AGG | + | tig0043592:3598-3617 | Msa1463710:intergenic | 35.0% | |
| TACAAATAAAATAGCCCAGG+AGG | - | tig0043592:3747-3766 | Msa1463710:CDS | 35.0% | |
| CTACTTTCAAAAGCCTTCAA+AGG | + | tig0043592:3829-3848 | Msa1463710:intergenic | 35.0% | |
| !! | GCTTTTGAAAGTAGTACCAA+CGG | - | tig0043592:3835-3854 | Msa1463710:CDS | 35.0% |
| AGATGAAACAGAATTGTTGC+TGG | + | tig0043592:3872-3891 | Msa1463710:intergenic | 35.0% | |
| ATTAAAACTCCCATGTTCAG+GGG | + | tig0043592:3965-3984 | Msa1463710:intergenic | 35.0% | |
| GATTAAAACTCCCATGTTCA+GGG | + | tig0043592:3966-3985 | Msa1463710:intergenic | 35.0% | |
| TGATTAAAACTCCCATGTTC+AGG | + | tig0043592:3967-3986 | Msa1463710:intergenic | 35.0% | |
| GGACCTGATGAAAATATTTC+TGG | - | tig0043592:4021-4040 | Msa1463710:CDS | 35.0% | |
| ! | TCGCCAGAAATATTTTCATC+AGG | + | tig0043592:4027-4046 | Msa1463710:intergenic | 35.0% |
| CAAACAACTACATCTGATTC+CGG | - | tig0043592:4156-4175 | Msa1463710:CDS | 35.0% | |
| CTATTATTTGGCAAGCTTAC+TGG | + | tig0043592:4318-4337 | Msa1463710:intergenic | 35.0% | |
| CAGTAAGCTTGCCAAATAAT+AGG | - | tig0043592:4316-4335 | Msa1463710:CDS | 35.0% | |
| ! | AACTGGTGATGACAAATTCA+TGG | - | tig0043592:4377-4396 | Msa1463710:CDS | 35.0% |
| TGATGACAAATTCATGGTGA+GGG | - | tig0043592:4383-4402 | Msa1463710:CDS | 35.0% | |
| TTTACAAGAAGAGAAGGGAA+TGG | - | tig0043592:4473-4492 | Msa1463710:CDS | 35.0% | |
| ! | TTCTCAGTTGATTCCATTAC+TGG | + | tig0043592:4609-4628 | Msa1463710:intergenic | 35.0% |
| ! | AGTAATGGAATCAACTGAGA+AGG | - | tig0043592:4608-4627 | Msa1463710:CDS | 35.0% |
| ! | GTAATGGAATCAACTGAGAA+GGG | - | tig0043592:4609-4628 | Msa1463710:CDS | 35.0% |
| TACACTCATCAACGTTGTAA+AGG | - | tig0043592:4653-4672 | Msa1463710:intron | 35.0% | |
| ! | TCAAGTATTTCTGAACATCC+TGG | - | tig0043592:4798-4817 | Msa1463710:CDS | 35.0% |
| AATGCCAGAAAAGGAATCAT+TGG | - | tig0043592:4896-4915 | Msa1463710:CDS | 35.0% | |
| ! | ACATCCAATGATTCCTTTTC+TGG | + | tig0043592:4903-4922 | Msa1463710:intergenic | 35.0% |
| TAAATCTTCCAAACAGAGAG+CGG | - | tig0043592:4923-4942 | Msa1463710:CDS | 35.0% | |
| TTTGCTGCAGCAAAATAGAT+TGG | - | tig0043592:4980-4999 | Msa1463710:CDS | 35.0% | |
| ! | CATCAATCCTTTTAGACTCT+TGG | + | tig0043592:5078-5097 | Msa1463710:intergenic | 35.0% |
| CAAGAGTCTAAAAGGATTGA+TGG | - | tig0043592:5076-5095 | Msa1463710:CDS | 35.0% | |
| ! | TCTAAAAGGATTGATGGTTG+AGG | - | tig0043592:5082-5101 | Msa1463710:CDS | 35.0% |
| ! | ATTGATGGTTGAGGAAAGTA+GGG | - | tig0043592:5091-5110 | Msa1463710:CDS | 35.0% |
| !!! | AATTGGCTTTTCAGGAGAAG+AGG | + | tig0043592:2869-2888 | Msa1396410:intergenic | 40.0% |
| TCATGTTCCTCGAAAAACCA+TGG | - | tig0043592:2897-2916 | Msa1463710:three_prime_UTR | 40.0% | |
| AGTTCGTGTAGTGAAAAAGG+TGG | - | tig0043592:2940-2959 | Msa1463710:three_prime_UTR | 40.0% | |
| GTTTCAAAAGCAGCACCAAA+GGG | - | tig0043592:2985-3004 | Msa1463710:three_prime_UTR | 40.0% | |
| ! | GTGATTTTGTCATCACCCTT+TGG | + | tig0043592:3003-3022 | Msa1463710:intergenic | 40.0% |
| ! | TTTTCTCACCAATCGATGAC+AGG | + | tig0043592:3035-3054 | Msa1463710:intergenic | 40.0% |
| !! | GAGCTATTTCTTTCTCTACC+GGG | + | tig0043592:3075-3094 | Msa1463710:intergenic | 40.0% |
| TGCCAAAACAGATAAACAGG+AGG | - | tig0043592:3107-3126 | Msa1463710:CDS | 40.0% | |
| ATGTTGGATCTAAGCAAGCA+AGG | - | tig0043592:3163-3182 | Msa1463710:CDS | 40.0% | |
| GATGGGACCAAAACATGAAA+AGG | - | tig0043592:3203-3222 | Msa1463710:CDS | 40.0% | |
| AGATGAGTTCTCCAATGAGA+GGG | - | tig0043592:3232-3251 | Msa1463710:CDS | 40.0% | |
| ! | TGGTTTGAAGCCTAATGTAG+AGG | - | tig0043592:3341-3360 | Msa1463710:CDS | 40.0% |
| AAAGTTGGCACCTCTACATT+AGG | + | tig0043592:3354-3373 | Msa1463710:intergenic | 40.0% | |
| !!! | GCTTTTGAAGGTGCTAAAGT+TGG | + | tig0043592:3369-3388 | Msa1463710:intergenic | 40.0% |
| !!! | GAATGAAGGGTTGCTTTTGA+AGG | + | tig0043592:3381-3400 | Msa1463710:intergenic | 40.0% |
| ! | GGATTCGTTTTGCAGAATGA+AGG | + | tig0043592:3395-3414 | Msa1463710:intergenic | 40.0% |
| TCATTCTGCAAAACGAATCC+AGG | - | tig0043592:3395-3414 | Msa1463710:CDS | 40.0% | |
| CATTCTGCAAAACGAATCCA+GGG | - | tig0043592:3396-3415 | Msa1463710:CDS | 40.0% | |
| !!! | GTTTTGAAGTATGTGATCCC+TGG | + | tig0043592:3416-3435 | Msa1463710:intergenic | 40.0% |
| ATCATCGGTAACTGCTATCA+TGG | + | tig0043592:3523-3542 | Msa1463710:intergenic | 40.0% | |
| !!! | CGAGGTTTAGTTTTTGGTGT+AGG | + | tig0043592:3550-3569 | Msa1463710:intergenic | 40.0% |
| ACTTGTTTGATAGGACCACA+TGG | + | tig0043592:3589-3608 | Msa1463710:intergenic | 40.0% | |
| !! | CTTGGAGGAGTCTTTTGTTT+TGG | + | tig0043592:3640-3659 | Msa1463710:intergenic | 40.0% |
| TTATTGCGTCCCAGAAATGA+GGG | + | tig0043592:3676-3695 | Msa1463710:intergenic | 40.0% | |
| AGGCTAAGATGAGACATCAT+CGG | - | tig0043592:3767-3786 | Msa1463710:CDS | 40.0% | |
| ! | AAAGGCTCTCTAGAAACATG+TGG | + | tig0043592:3811-3830 | Msa1463710:intergenic | 40.0% |
| !! | TGTTTCTAGAGAGCCTTTGA+AGG | - | tig0043592:3813-3832 | Msa1463710:CDS | 40.0% |
| TCATCTTCAGTCTCTGTTCA+AGG | - | tig0043592:3886-3905 | Msa1463710:CDS | 40.0% | |
| TTAAAACTCCCATGTTCAGG+GGG | + | tig0043592:3964-3983 | Msa1463710:intergenic | 40.0% | |
| !! | AAAAGTTGGTGTAAACGGAG+AGG | + | tig0043592:4052-4071 | Msa1463710:intergenic | 40.0% |
| GTAATGAGAAAGTAAGTCCC+AGG | - | tig0043592:4088-4107 | Msa1463710:CDS | 40.0% | |
| TTTGGCAGGCTAACTTTATG+AGG | + | tig0043592:4342-4361 | Msa1463710:intergenic | 40.0% | |
| GTTGAGATGCACATAAGCTT+TGG | + | tig0043592:4360-4379 | Msa1463710:intergenic | 40.0% | |
| AAGCTTATGTGCATCTCAAC+TGG | - | tig0043592:4360-4379 | Msa1463710:CDS | 40.0% | |
| GTGATGACAAATTCATGGTG+AGG | - | tig0043592:4382-4401 | Msa1463710:CDS | 40.0% | |
| AACTGCTATGGCGTATAACA+TGG | + | tig0043592:4566-4585 | Msa1463710:intergenic | 40.0% | |
| TTATACGCCATAGCAGTTAC+CGG | - | tig0043592:4568-4587 | Msa1463710:CDS | 40.0% | |
| GGAGTTACAAACGTAGATGT+TGG | - | tig0043592:4630-4649 | Msa1463710:CDS | 40.0% | |
| TGAAGAGGAAATGCCAGAAA+AGG | - | tig0043592:4887-4906 | Msa1463710:CDS | 40.0% | |
| ! | GAGACCTTACCTTTTCCAAA+GGG | + | tig0043592:5029-5048 | Msa1463710:intergenic | 40.0% |
| AAAAGGTAAGGTCTCCTCAA+GGG | - | tig0043592:5034-5053 | Msa1463710:CDS | 40.0% | |
| ! | GATTGATGGTTGAGGAAAGT+AGG | - | tig0043592:5090-5109 | Msa1463710:CDS | 40.0% |
| ! | TTGATGGTTGAGGAAAGTAG+GGG | - | tig0043592:5092-5111 | Msa1463710:CDS | 40.0% |
| CTCATTCTTCAGTGCCTTTA+TGG | - | tig0043592:5266-5285 | Msa1463710:CDS | 40.0% | |
| !! | ATTTGTTGCGATTGGCCTAA+TGG | - | tig0043592:5347-5366 | Msa1463710:CDS | 40.0% |
| TTGAGTATGCGTTAGCCATT+AGG | + | tig0043592:5365-5384 | Msa1463710:intergenic | 40.0% | |
| !! | TTTTCAGGAGAAGAGGCTGA+TGG | + | tig0043592:2862-2881 | Msa1396410:intergenic | 45.0% |
| ! | CTTTCTGCCATGGTTTTTCG+AGG | + | tig0043592:2907-2926 | Msa1463710:intergenic | 45.0% |
| CGTTTCAAAAGCAGCACCAA+AGG | - | tig0043592:2984-3003 | Msa1463710:three_prime_UTR | 45.0% | |
| GGGTGATGACAAAATCACTG+AGG | - | tig0043592:3005-3024 | Msa1463710:three_prime_UTR | 45.0% | |
| ATCACTGACCTTATCATGCC+CGG | - | tig0043592:3054-3073 | Msa1463710:three_prime_UTR | 45.0% | |
| TTTCTCTACCGGGCATGATA+AGG | + | tig0043592:3065-3084 | Msa1463710:intergenic | 45.0% | |
| GAGATGAGTTCTCCAATGAG+AGG | - | tig0043592:3231-3250 | Msa1463710:CDS | 45.0% | |
| ATATACAGCCAGCCTTCATC+AGG | + | tig0043592:3260-3279 | Msa1463710:intergenic | 45.0% | |
| TGTTTGATAGGACCACATGG+TGG | + | tig0043592:3586-3605 | Msa1463710:intergenic | 45.0% | |
| TTTGGCTGTGCAGAAACTTC+AGG | + | tig0043592:3622-3641 | Msa1463710:intergenic | 45.0% | |
| GAAATGAGGGTGGCTTAAGT+AGG | + | tig0043592:3663-3682 | Msa1463710:intergenic | 45.0% | |
| ACTTAAGCCACCCTCATTTC+TGG | - | tig0043592:3663-3682 | Msa1463710:CDS | 45.0% | |
| CTTAAGCCACCCTCATTTCT+GGG | - | tig0043592:3664-3683 | Msa1463710:CDS | 45.0% | |
| CTTATTGCGTCCCAGAAATG+AGG | + | tig0043592:3677-3696 | Msa1463710:intergenic | 45.0% | |
| TGCATTTGGCATATCATGCC+CGG | + | tig0043592:3704-3723 | Msa1463710:intergenic | 45.0% | |
| ATGTCTCATCTTAGCCTCCT+GGG | + | tig0043592:3764-3783 | Msa1463710:intergenic | 45.0% | |
| ! | AGACATCATCGGTTGCCTAA+CGG | - | tig0043592:3778-3797 | Msa1463710:CDS | 45.0% |
| TTCATCAGGTCCACTACTGT+TGG | + | tig0043592:4013-4032 | Msa1463710:intergenic | 45.0% | |
| AGTAAGTCCCAGGTTAACTC+TGG | - | tig0043592:4098-4117 | Msa1463710:CDS | 45.0% | |
| GAGTGATCCAGAGTTAACCT+GGG | + | tig0043592:4108-4127 | Msa1463710:intergenic | 45.0% | |
| TGAGTGATCCAGAGTTAACC+TGG | + | tig0043592:4109-4128 | Msa1463710:intergenic | 45.0% | |
| TACATCTGATTCCGGTGAGT+GGG | - | tig0043592:4164-4183 | Msa1463710:CDS | 45.0% | |
| TCTTGTGTGACTTTGGCAGA+CGG | + | tig0043592:4195-4214 | Msa1463710:intergenic | 45.0% | |
| ! | AGATGCACATAAGCTTTGGC+AGG | + | tig0043592:4356-4375 | Msa1463710:intergenic | 45.0% |
| TATACGCCATAGCAGTTACC+GGG | - | tig0043592:4569-4588 | Msa1463710:CDS | 45.0% | |
| AGGGAGTGATCTTCCAGTAA+TGG | - | tig0043592:4593-4612 | Msa1463710:CDS | 45.0% | |
| TTTCCTCTTCAGCTGTAGGA+AGG | + | tig0043592:4878-4897 | Msa1463710:intergenic | 45.0% | |
| GCTGCAGCAAAATAGATTGG+AGG | - | tig0043592:4983-5002 | Msa1463710:CDS | 45.0% | |
| ! | GTTCTCAAGCCCTTTGGAAA+AGG | - | tig0043592:5017-5036 | Msa1463710:CDS | 45.0% |
| ! | CAAGCCCTTTGGAAAAGGTA+AGG | - | tig0043592:5022-5041 | Msa1463710:CDS | 45.0% |
| ! | GGAGACCTTACCTTTTCCAA+AGG | + | tig0043592:5030-5049 | Msa1463710:intergenic | 45.0% |
| GAAAAGGTAAGGTCTCCTCA+AGG | - | tig0043592:5033-5052 | Msa1463710:CDS | 45.0% | |
| AAGGGAGACAGCTATTTGGT+TGG | - | tig0043592:5052-5071 | Msa1463710:CDS | 45.0% | |
| ! | TGGTTGGCCAAGAGTCTAAA+AGG | - | tig0043592:5068-5087 | Msa1463710:CDS | 45.0% |
| AGTAGGGGACGTAGTTAGTA+AGG | - | tig0043592:5107-5126 | Msa1463710:CDS | 45.0% | |
| GAGGTAGACCTGTCATCGAT+TGG | - | tig0043592:3024-3043 | Msa1463710:three_prime_UTR | 50.0% | |
| TTCATCAGGCTCCCTCTCAT+TGG | + | tig0043592:3246-3265 | Msa1463710:intergenic | 50.0% | |
| AATGAGAGGGAGCCTGATGA+AGG | - | tig0043592:3245-3264 | Msa1463710:CDS | 50.0% | |
| GATGTCTCATCTTAGCCTCC+TGG | + | tig0043592:3765-3784 | Msa1463710:intergenic | 50.0% | |
| ACATGTGGCAGATGACCGTT+AGG | + | tig0043592:3796-3815 | Msa1463710:intergenic | 50.0% | |
| GCTGGTTGTTTGCATTCCGT+TGG | + | tig0043592:3854-3873 | Msa1463710:intergenic | 50.0% | |
| AACCAACACCCCCTGAACAT+GGG | - | tig0043592:3953-3972 | Msa1463710:CDS | 50.0% | |
| GGATCACTTGCCAACAGTAG+TGG | - | tig0043592:4000-4019 | Msa1463710:CDS | 50.0% | |
| CTACATCTGATTCCGGTGAG+TGG | - | tig0043592:4163-4182 | Msa1463710:CDS | 50.0% | |
| AGGAGCAATTTCAGCCACTG+AGG | + | tig0043592:4418-4437 | Msa1463710:intergenic | 50.0% | |
| GCAACAGAAAGACCAGCTTC+TGG | - | tig0043592:4510-4529 | Msa1463710:CDS | 50.0% | |
| ATGACATCATCGAGAGCTCG+GGG | + | tig0043592:4543-4562 | Msa1463710:intergenic | 50.0% | |
| GATGACATCATCGAGAGCTC+GGG | + | tig0043592:4544-4563 | Msa1463710:intergenic | 50.0% | |
| GGATGACATCATCGAGAGCT+CGG | + | tig0043592:4545-4564 | Msa1463710:intergenic | 50.0% | |
| TAGCCTTCCTACAGCTGAAG+AGG | - | tig0043592:4872-4891 | Msa1463710:CDS | 50.0% | |
| GGCATTTCCTCTTCAGCTGT+AGG | + | tig0043592:4882-4901 | Msa1463710:intergenic | 50.0% | |
| AAGTGCATCCGCTCTCTGTT+TGG | + | tig0043592:4934-4953 | Msa1463710:intergenic | 50.0% | |
| AGAGAGCGGATGCACTTGAA+GGG | - | tig0043592:4937-4956 | Msa1463710:CDS | 50.0% | |
| GCAGTTGTTCTCAAGCCCTT+TGG | - | tig0043592:5011-5030 | Msa1463710:CDS | 50.0% | |
| CCAAATAGCTGTCTCCCTTG+AGG | + | tig0043592:5051-5070 | Msa1463710:intergenic | 50.0% | |
| CCTCAAGGGAGACAGCTATT+TGG | - | tig0043592:5048-5067 | Msa1463710:CDS | 50.0% | |
| CAGAAGGTGACACCACCATG+TGG | - | tig0043592:3571-3590 | Msa1463710:CDS | 55.0% | |
| GGTGGCTTAAGTAGGCTTGG+AGG | + | tig0043592:3655-3674 | Msa1463710:intergenic | 55.0% | |
| GAGGGTGGCTTAAGTAGGCT+TGG | + | tig0043592:3658-3677 | Msa1463710:intergenic | 55.0% | |
| TTGCGTCCCAGAAATGAGGG+TGG | + | tig0043592:3673-3692 | Msa1463710:intergenic | 55.0% | |
| CTGGGACGCAATAAGCAAGC+CGG | - | tig0043592:3682-3701 | Msa1463710:CDS | 55.0% | |
| TGGGACGCAATAAGCAAGCC+GGG | - | tig0043592:3683-3702 | Msa1463710:CDS | 55.0% | |
| GAACCAACACCCCCTGAACA+TGG | - | tig0043592:3952-3971 | Msa1463710:CDS | 55.0% | |
| AGACGGAACATCCCACTCAC+CGG | + | tig0043592:4178-4197 | Msa1463710:intergenic | 55.0% | |
| !! | GAGGGAAAGAGTGTCCTCAG+TGG | - | tig0043592:4401-4420 | Msa1463710:CDS | 55.0% |
| GCCATAGCAGTTACCGGGTA+GGG | - | tig0043592:4574-4593 | Msa1463710:CDS | 55.0% | |
| TCCCTACCCGGTAACTGCTA+TGG | + | tig0043592:4578-4597 | Msa1463710:intergenic | 55.0% | |
| CTGGAAGATCACTCCCTACC+CGG | + | tig0043592:4590-4609 | Msa1463710:intergenic | 55.0% | |
| GCATCTTGCTCTTCAACGCC+AGG | + | tig0043592:4819-4838 | Msa1463710:intergenic | 55.0% | |
| CAGAGAGCGGATGCACTTGA+AGG | - | tig0043592:4936-4955 | Msa1463710:CDS | 55.0% | |
| AGAGGGAGCCTGATGAAGGC+TGG | - | tig0043592:3249-3268 | Msa1463710:CDS | 60.0% | |
| !! | GGTGGTGTCACCTTCTGTCG+AGG | + | tig0043592:3568-3587 | Msa1463710:intergenic | 60.0% |
| ! | CTCCCATGTTCAGGGGGTGT+TGG | + | tig0043592:3958-3977 | Msa1463710:intergenic | 60.0% |
| CATCGAGAGCTCGGGGAAGA+TGG | + | tig0043592:4536-4555 | Msa1463710:intergenic | 60.0% | |
| CGCCATAGCAGTTACCGGGT+AGG | - | tig0043592:4573-4592 | Msa1463710:CDS | 60.0% | |
| CGGGGAAGATGGCCAGAAGC+TGG | + | tig0043592:4525-4544 | Msa1463710:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043592 | gene | 2790 | 5408 | 2790 | ID=Msa1463710;Name=Msa1463710 |
| tig0043592 | mRNA | 2790 | 5408 | 2790 | ID=Msa1463710-mRNA-1;Parent=Msa1463710;Name=Msa1463710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|284|748 |
| tig0043592 | exon | 2790 | 4669 | 2790 | ID=Msa1463710-mRNA-1:exon:24162;Parent=Msa1463710-mRNA-1 |
| tig0043592 | exon | 4758 | 5408 | 4758 | ID=Msa1463710-mRNA-1:exon:24161;Parent=Msa1463710-mRNA-1 |
| tig0043592 | CDS | 4758 | 5408 | 4758 | ID=Msa1463710-mRNA-1:cds;Parent=Msa1463710-mRNA-1 |
| tig0043592 | CDS | 3074 | 4669 | 3074 | ID=Msa1463710-mRNA-1:cds;Parent=Msa1463710-mRNA-1 |
| tig0043592 | three_prime_UTR | 2790 | 3073 | 2790 | ID=Msa1463710-mRNA-1:three_prime_utr;Parent=Msa1463710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
