Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463760 | AES67507.1 | 98.364 | 428 | 7 | 0 | 1 | 428 | 328 | 755 | 0.0 | 879 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463760 | sp|Q653H7|ARFR_ORYSJ | 55.819 | 421 | 150 | 9 | 3 | 402 | 295 | 700 | 2.71e-151 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463760 | G7IRU1 | 98.364 | 428 | 7 | 0 | 1 | 428 | 328 | 755 | 0.0 | 879 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0426810 | Msa1463760 | 0.808646 | 2.796624e-50 | -8.615850e-47 |
| Msa0301380 | Msa1463760 | 0.960326 | 1.973222e-118 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463760 | MtrunA17_Chr2g0326761 | 98.364 | 428 | 7 | 0 | 1 | 428 | 272 | 699 | 0.0 | 879 |
| Msa1463760 | MtrunA17_Chr4g0028971 | 68.565 | 439 | 108 | 10 | 1 | 428 | 279 | 698 | 0.0 | 543 |
| Msa1463760 | MtrunA17_Chr1g0181211 | 54.258 | 411 | 149 | 10 | 3 | 395 | 298 | 687 | 1.32e-136 | 407 |
| Msa1463760 | MtrunA17_Chr1g0199681 | 51.536 | 293 | 116 | 5 | 1 | 269 | 354 | 644 | 2.04e-78 | 256 |
| Msa1463760 | MtrunA17_Chr7g0264171 | 48.679 | 265 | 111 | 8 | 1 | 254 | 304 | 554 | 4.90e-72 | 238 |
| Msa1463760 | MtrunA17_Chr3g0115271 | 38.346 | 266 | 144 | 9 | 10 | 264 | 286 | 542 | 4.75e-38 | 145 |
| Msa1463760 | MtrunA17_Chr7g0264161 | 64.286 | 84 | 29 | 1 | 1 | 84 | 219 | 301 | 2.00e-31 | 122 |
| Msa1463760 | MtrunA17_Chr5g0424931 | 37.500 | 208 | 101 | 8 | 1 | 198 | 267 | 455 | 1.96e-27 | 114 |
| Msa1463760 | MtrunA17_Chr5g0436761 | 40.212 | 189 | 99 | 6 | 2 | 188 | 237 | 413 | 2.90e-27 | 113 |
| Msa1463760 | MtrunA17_Chr4g0070181 | 40.625 | 128 | 71 | 3 | 6 | 133 | 258 | 380 | 5.61e-22 | 99.0 |
| Msa1463760 | MtrunA17_Chr5g0417281 | 33.778 | 225 | 121 | 10 | 1 | 210 | 232 | 443 | 3.69e-20 | 92.8 |
| Msa1463760 | MtrunA17_Chr5g0433301 | 42.520 | 127 | 65 | 4 | 6 | 130 | 260 | 380 | 1.13e-19 | 91.7 |
| Msa1463760 | MtrunA17_Chr5g0425651 | 41.071 | 112 | 59 | 3 | 1 | 108 | 4 | 112 | 3.81e-19 | 83.2 |
| Msa1463760 | MtrunA17_Chr7g0239061 | 24.153 | 443 | 263 | 17 | 4 | 398 | 245 | 662 | 1.62e-18 | 88.2 |
| Msa1463760 | MtrunA17_Chr8g0376771 | 40.310 | 129 | 71 | 4 | 6 | 133 | 258 | 381 | 2.95e-18 | 87.4 |
| Msa1463760 | MtrunA17_Chr2g0282961 | 38.583 | 127 | 69 | 3 | 9 | 127 | 293 | 418 | 4.93e-18 | 86.7 |
| Msa1463760 | MtrunA17_Chr2g0301251 | 43.137 | 102 | 57 | 1 | 5 | 106 | 257 | 357 | 5.33e-18 | 87.0 |
| Msa1463760 | MtrunA17_Chr3g0109391 | 40.945 | 127 | 67 | 4 | 6 | 130 | 262 | 382 | 1.22e-17 | 85.5 |
| Msa1463760 | MtrunA17_Chr2g0285461 | 39.535 | 129 | 72 | 4 | 6 | 133 | 259 | 382 | 2.87e-17 | 84.3 |
| Msa1463760 | MtrunA17_Chr1g0156321 | 43.750 | 96 | 52 | 2 | 10 | 104 | 282 | 376 | 1.14e-16 | 82.4 |
| Msa1463760 | MtrunA17_Chr2g0277461 | 41.085 | 129 | 63 | 6 | 1 | 128 | 241 | 357 | 1.96e-16 | 81.3 |
| Msa1463760 | MtrunA17_Chr8g0385791 | 39.474 | 114 | 66 | 2 | 10 | 123 | 298 | 408 | 4.72e-16 | 80.5 |
| Msa1463760 | MtrunA17_Chr8g0389081 | 46.465 | 99 | 51 | 2 | 10 | 107 | 272 | 369 | 5.28e-16 | 80.5 |
| Msa1463760 | MtrunA17_Chr1g0178011 | 33.533 | 167 | 96 | 6 | 2 | 163 | 240 | 396 | 6.38e-16 | 79.7 |
| Msa1463760 | MtrunA17_Chr4g0009751 | 39.200 | 125 | 70 | 5 | 4 | 125 | 250 | 371 | 1.13e-15 | 79.3 |
| Msa1463760 | MtrunA17_Chr4g0046371 | 39.583 | 96 | 56 | 2 | 9 | 104 | 283 | 376 | 6.84e-15 | 77.0 |
| Msa1463760 | MtrunA17_Chr2g0326281 | 33.333 | 129 | 85 | 1 | 5 | 133 | 312 | 439 | 1.37e-14 | 76.3 |
| Msa1463760 | MtrunA17_Chr5g0425261 | 41.818 | 110 | 54 | 4 | 2 | 105 | 231 | 336 | 6.99e-14 | 72.8 |
| Msa1463760 | MtrunA17_Chr5g0424741 | 37.615 | 109 | 61 | 4 | 1 | 105 | 266 | 371 | 1.63e-13 | 72.4 |
| Msa1463760 | MtrunA17_Chr4g0029671 | 35.000 | 100 | 65 | 0 | 5 | 104 | 297 | 396 | 7.87e-13 | 70.5 |
| Msa1463760 | MtrunA17_Chr2g0276781 | 40.404 | 99 | 57 | 2 | 10 | 107 | 261 | 358 | 6.59e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463760 | AT2G28350.1 | 53.986 | 439 | 156 | 10 | 7 | 428 | 284 | 693 | 1.48e-146 | 433 |
| Msa1463760 | AT2G28350.2 | 53.511 | 413 | 146 | 10 | 7 | 402 | 284 | 667 | 7.79e-134 | 400 |
| Msa1463760 | AT4G30080.1 | 52.206 | 408 | 160 | 9 | 3 | 398 | 282 | 666 | 5.91e-128 | 385 |
| Msa1463760 | AT1G77850.1 | 34.694 | 294 | 156 | 11 | 4 | 278 | 278 | 554 | 1.07e-33 | 133 |
| Msa1463760 | AT1G77850.2 | 34.694 | 294 | 156 | 11 | 4 | 278 | 278 | 554 | 1.38e-33 | 133 |
| Msa1463760 | AT5G20730.2 | 38.095 | 126 | 73 | 3 | 10 | 135 | 263 | 383 | 4.21e-19 | 90.9 |
| Msa1463760 | AT1G59750.1 | 27.318 | 399 | 236 | 14 | 10 | 391 | 260 | 621 | 4.58e-19 | 90.1 |
| Msa1463760 | AT1G59750.3 | 27.318 | 399 | 236 | 14 | 10 | 391 | 260 | 621 | 4.58e-19 | 90.1 |
| Msa1463760 | AT1G19220.1 | 37.302 | 126 | 74 | 3 | 10 | 135 | 262 | 382 | 5.38e-19 | 90.5 |
| Msa1463760 | AT5G37020.2 | 42.991 | 107 | 59 | 2 | 6 | 111 | 258 | 363 | 1.86e-18 | 88.6 |
| Msa1463760 | AT5G37020.3 | 42.991 | 107 | 59 | 2 | 6 | 111 | 163 | 268 | 1.94e-18 | 88.2 |
| Msa1463760 | AT5G37020.1 | 42.991 | 107 | 59 | 2 | 6 | 111 | 258 | 363 | 2.00e-18 | 88.6 |
| Msa1463760 | AT1G19850.1 | 48.958 | 96 | 47 | 2 | 10 | 104 | 294 | 388 | 2.60e-18 | 88.2 |
| Msa1463760 | AT1G19850.2 | 48.958 | 96 | 47 | 2 | 10 | 104 | 283 | 377 | 2.76e-18 | 88.2 |
| Msa1463760 | AT5G20730.1 | 37.795 | 127 | 73 | 4 | 10 | 135 | 263 | 384 | 7.88e-18 | 86.7 |
| Msa1463760 | AT5G20730.3 | 37.795 | 127 | 73 | 4 | 10 | 135 | 263 | 384 | 9.06e-18 | 86.7 |
| Msa1463760 | AT5G60450.1 | 40.833 | 120 | 68 | 2 | 4 | 123 | 306 | 422 | 9.25e-18 | 86.3 |
| Msa1463760 | AT5G60450.2 | 40.833 | 120 | 68 | 2 | 4 | 123 | 282 | 398 | 9.76e-18 | 86.3 |
| Msa1463760 | AT1G30330.1 | 40.310 | 129 | 71 | 4 | 6 | 133 | 259 | 382 | 1.67e-17 | 85.5 |
| Msa1463760 | AT1G30330.3 | 40.310 | 129 | 71 | 4 | 6 | 133 | 261 | 384 | 1.74e-17 | 85.5 |
| Msa1463760 | AT1G30330.2 | 40.310 | 129 | 71 | 4 | 6 | 133 | 261 | 384 | 1.74e-17 | 85.5 |
| Msa1463760 | AT5G62000.2 | 41.228 | 114 | 64 | 2 | 10 | 123 | 300 | 410 | 4.57e-17 | 84.3 |
| Msa1463760 | AT5G62000.5 | 41.228 | 114 | 64 | 2 | 10 | 123 | 300 | 410 | 4.57e-17 | 84.3 |
| Msa1463760 | AT5G62000.3 | 41.228 | 114 | 64 | 2 | 10 | 123 | 300 | 410 | 4.57e-17 | 84.3 |
| Msa1463760 | AT5G62000.1 | 41.228 | 114 | 64 | 2 | 10 | 123 | 300 | 410 | 4.57e-17 | 84.3 |
| Msa1463760 | AT5G62000.4 | 41.228 | 114 | 64 | 2 | 10 | 123 | 300 | 410 | 4.80e-17 | 84.3 |
| Msa1463760 | ATMG00940.1 | 50.649 | 77 | 35 | 2 | 4 | 79 | 74 | 148 | 1.37e-15 | 74.7 |
| Msa1463760 | AT2G33860.2 | 36.090 | 133 | 80 | 4 | 5 | 134 | 133 | 263 | 1.13e-14 | 76.3 |
| Msa1463760 | AT2G33860.1 | 34.848 | 132 | 83 | 3 | 5 | 134 | 290 | 420 | 1.76e-14 | 75.9 |
| Msa1463760 | AT1G59750.4 | 37.903 | 124 | 74 | 2 | 10 | 133 | 260 | 380 | 1.55e-13 | 73.2 |
| Msa1463760 | AT1G59750.2 | 37.903 | 124 | 74 | 2 | 10 | 133 | 260 | 380 | 1.75e-13 | 72.8 |
| Msa1463760 | AT4G23980.2 | 39.815 | 108 | 60 | 4 | 2 | 108 | 243 | 346 | 1.99e-12 | 69.7 |
| Msa1463760 | AT4G23980.1 | 39.815 | 108 | 60 | 4 | 2 | 108 | 243 | 346 | 1.99e-12 | 69.7 |
| Msa1463760 | AT2G46530.2 | 38.739 | 111 | 51 | 5 | 10 | 119 | 173 | 267 | 1.83e-11 | 66.2 |
| Msa1463760 | AT2G46530.1 | 38.739 | 111 | 51 | 5 | 10 | 119 | 260 | 354 | 2.42e-11 | 66.2 |
| Msa1463760 | AT2G46530.3 | 38.136 | 118 | 55 | 6 | 4 | 119 | 274 | 375 | 3.11e-11 | 65.9 |
Find 99 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCGTCTCTCGATTATT+TGG | 0.140943 | tig0043600:+6210 | Msa1463760:intergenic |
| TTAAATTTGAAACTATTAAT+TGG | 0.156727 | tig0043600:-5097 | Msa1463760:three_prime_UTR |
| CGCTCCTGCCGCAGGCATTC+AGG | 0.178149 | tig0043600:-6310 | Msa1463760:CDS |
| ATACAACACAAAGGGTTAAA+AGG | 0.216528 | tig0043600:+6354 | Msa1463760:intergenic |
| TCGAAACCGAAGATTCTTCT+AGG | 0.244012 | tig0043600:-7471 | Msa1463760:CDS |
| CTTCAAATTTAATCAAATAT+TGG | 0.256686 | tig0043600:-5225 | Msa1463760:three_prime_UTR |
| GGGAACTATTTCTTCTGTTC+AGG | 0.264499 | tig0043600:-7434 | Msa1463760:CDS |
| TTGACAATTCTGATGGATTC+AGG | 0.309644 | tig0043600:-5520 | Msa1463760:CDS |
| TTCCCCTTGGAGACTTCTTC+AGG | 0.314727 | tig0043600:-7386 | Msa1463760:intron |
| TTCACATTGTGTAGTAAATC+TGG | 0.325303 | tig0043600:+6531 | Msa1463760:intergenic |
| AGAAGTCTCCAAGGGGAATT+AGG | 0.326359 | tig0043600:+7391 | Msa1463760:intergenic |
| AGAAAACTGGCTAAGATGTT+TGG | 0.333734 | tig0043600:-5763 | Msa1463760:CDS |
| TGAAGAACTTTATAGAAAAC+TGG | 0.335874 | tig0043600:-5776 | Msa1463760:CDS |
| GGAGCCAGGCATGCTCAAAT+TGG | 0.343033 | tig0043600:-6288 | Msa1463760:CDS |
| ATGAGAATTCAATGGTGTTC+TGG | 0.351703 | tig0043600:-7514 | Msa1463760:CDS |
| TAAATTTGAAACTATTAATT+GGG | 0.355409 | tig0043600:-5096 | Msa1463760:three_prime_UTR |
| TTCTAATGTTAACCAACATT+TGG | 0.365021 | tig0043600:-5138 | Msa1463760:three_prime_UTR |
| TTCTAGGATTAGTTGGTTCA+TGG | 0.372148 | tig0043600:-7455 | Msa1463760:CDS |
| AAGTCCATGGTTGGTTGAAT+TGG | 0.376626 | tig0043600:-6502 | Msa1463760:CDS |
| TCAAATTGGAATATCTTTAT+CGG | 0.377207 | tig0043600:-6274 | Msa1463760:CDS |
| ACTGAAATTTGTTGTTGTTA+AGG | 0.379784 | tig0043600:+6244 | Msa1463760:intergenic |
| AAAATGTTGGTATCTGAAAC+TGG | 0.382111 | tig0043600:+6385 | Msa1463760:intergenic |
| TTTCTTTGCTCTTATTATCA+TGG | 0.382194 | tig0043600:+6163 | Msa1463760:intergenic |
| TTTGTGTTGTATATCTTCTT+CGG | 0.389379 | tig0043600:-6343 | Msa1463760:CDS |
| AAATTCTCACAAGAGAAGTT+TGG | 0.389679 | tig0043600:-6115 | Msa1463760:CDS |
| CAATATTTGATTAAATTTGA+AGG | 0.401250 | tig0043600:+5226 | Msa1463760:intergenic |
| ACCAACACATGACAAATCTA+AGG | 0.412661 | tig0043600:+5804 | Msa1463760:intergenic |
| AAGATTCTTCTAGGATTAGT+TGG | 0.415313 | tig0043600:-7462 | Msa1463760:CDS |
| TGCTAGTAATCAAACATTTG+AGG | 0.416661 | tig0043600:-7602 | Msa1463760:CDS |
| GCTCCTGCCGCAGGCATTCA+GGG | 0.419621 | tig0043600:-6309 | Msa1463760:CDS |
| GCTCCCTGAATGCCTGCGGC+AGG | 0.423621 | tig0043600:+6306 | Msa1463760:intergenic |
| ATATCATGTCTGTTGACTAT+AGG | 0.423697 | tig0043600:-6138 | Msa1463760:CDS |
| ATTAGATACTGGTCATTGTA+AGG | 0.424326 | tig0043600:-5857 | Msa1463760:CDS |
| ATTTGCAGGGTTTGTATCAC+AGG | 0.434573 | tig0043600:-5396 | Msa1463760:intron |
| TGGCAACTTGGATTAGATAC+TGG | 0.435835 | tig0043600:-5868 | Msa1463760:CDS |
| AACAACAACAAATTTCAGTT+AGG | 0.435844 | tig0043600:-6240 | Msa1463760:CDS |
| GTGGCATTTACCATGGGAAA+GGG | 0.437415 | tig0043600:-5062 | Msa1463760:three_prime_UTR |
| TTCAATGGTGTTCTGGGATG+AGG | 0.437710 | tig0043600:-7507 | Msa1463760:CDS |
| ACCTTAGATTTGTCATGTGT+TGG | 0.444478 | tig0043600:-5805 | Msa1463760:CDS |
| TTCTTCCTTGGTGGTGAGAA+GGG | 0.447097 | tig0043600:+6450 | Msa1463760:intergenic |
| TTTCTTCCTTGGTGGTGAGA+AGG | 0.447588 | tig0043600:+6449 | Msa1463760:intergenic |
| CCGCAGGCATTCAGGGAGCC+AGG | 0.455283 | tig0043600:-6302 | Msa1463760:CDS |
| TTCGTTGGCCTAATTCCCCT+TGG | 0.456414 | tig0043600:-7399 | Msa1463760:CDS |
| TAACCTAATTGCAGGTCACT+TGG | 0.458129 | tig0043600:-6560 | Msa1463760:intron |
| TGTGTTGTTGTCCAAGAAAA+AGG | 0.460383 | tig0043600:-5992 | Msa1463760:CDS |
| ATTTGTTGCTCAGTGAGAAT+TGG | 0.462091 | tig0043600:+6039 | Msa1463760:intergenic |
| GTACTCTATCGTGATGCAAC+AGG | 0.463246 | tig0043600:-5712 | Msa1463760:CDS |
| TGAGAATTCAATGGTGTTCT+GGG | 0.468565 | tig0043600:-7513 | Msa1463760:CDS |
| TACAACACAAAGGGTTAAAA+GGG | 0.478847 | tig0043600:+6355 | Msa1463760:intergenic |
| AATCGAGAGACGATTTCTAA+TGG | 0.484316 | tig0043600:-6204 | Msa1463760:CDS |
| TATTCCAATTTGAGCATGCC+TGG | 0.486937 | tig0043600:+6284 | Msa1463760:intergenic |
| CAGGCAGCAAAGATACTAGA+AGG | 0.487275 | tig0043600:-5501 | Msa1463760:intron |
| TCTAGGATTAGTTGGTTCAT+GGG | 0.488794 | tig0043600:-7454 | Msa1463760:CDS |
| ACAGGTGCTGTTAAACAAAC+TGG | 0.490968 | tig0043600:-5694 | Msa1463760:CDS |
| AATTATAACGCTCCTGCCGC+AGG | 0.493589 | tig0043600:-6318 | Msa1463760:CDS |
| GGGGAATTAGGCCAACGAAT+AGG | 0.495789 | tig0043600:+7403 | Msa1463760:intergenic |
| ACTAATCCTAGAAGAATCTT+CGG | 0.501263 | tig0043600:+7465 | Msa1463760:intergenic |
| AATCCGGATGTTGTGGAAAA+CGG | 0.502333 | tig0043600:+6424 | Msa1463760:intergenic |
| ACAACATCGAGAGGGAAATC+CGG | 0.506711 | tig0043600:+6408 | Msa1463760:intergenic |
| AAGCTTCCATGAGAATTCAA+TGG | 0.508420 | tig0043600:-7522 | Msa1463760:CDS |
| AAACGGAGTTTCTTCCTTGG+TGG | 0.510040 | tig0043600:+6441 | Msa1463760:intergenic |
| TCTTAAACAAAGATGCTCAT+AGG | 0.516080 | tig0043600:+5327 | Msa1463760:intergenic |
| AGCACTAGCACTAGTGGTAG+AGG | 0.519267 | tig0043600:+5900 | Msa1463760:intergenic |
| GGAAAACGGAGTTTCTTCCT+TGG | 0.523736 | tig0043600:+6438 | Msa1463760:intergenic |
| AGAACACCATTGAATTCTCA+TGG | 0.530726 | tig0043600:+7516 | Msa1463760:intergenic |
| AAGAAGATATACAACACAAA+GGG | 0.535342 | tig0043600:+6346 | Msa1463760:intergenic |
| AGAGGGAAATCCGGATGTTG+TGG | 0.540838 | tig0043600:+6417 | Msa1463760:intergenic |
| AAACTGGTGAAGAACCCTTC+AGG | 0.541832 | tig0043600:-5678 | Msa1463760:intron |
| TATGTGATTTCAGAAGTTGA+AGG | 0.554805 | tig0043600:-5271 | Msa1463760:three_prime_UTR |
| AGGTTGTTGATCCTATTCGT+TGG | 0.555272 | tig0043600:-7414 | Msa1463760:CDS |
| TTAGATGCATCAAATAAGAC+AGG | 0.558939 | tig0043600:-5351 | Msa1463760:CDS |
| AAAGGGTTGCCTGAAAATGT+TGG | 0.562489 | tig0043600:+6372 | Msa1463760:intergenic |
| AACCTAATTGCAGGTCACTT+GGG | 0.568780 | tig0043600:-6559 | Msa1463760:intron |
| GGGTTTGTATCACAGGAACT+AGG | 0.573351 | tig0043600:-5389 | Msa1463760:CDS |
| TGCAAATGGAAACCAAATGT+TGG | 0.573639 | tig0043600:+5126 | Msa1463760:intergenic |
| GTGTATGGTGGCATTTACCA+TGG | 0.576925 | tig0043600:-5069 | Msa1463760:three_prime_UTR |
| TTCTTGGAGTCACAGGATGT+TGG | 0.577784 | tig0043600:-5832 | Msa1463760:CDS |
| GAAGAATCTTCGGTTTCGAA+TGG | 0.590530 | tig0043600:+7475 | Msa1463760:intergenic |
| TGAAACTGGACAACATCGAG+AGG | 0.594801 | tig0043600:+6399 | Msa1463760:intergenic |
| GATACCAATTCAACCAACCA+TGG | 0.596253 | tig0043600:+6498 | Msa1463760:intergenic |
| GAAGTCTTGATACAAAACTC+AGG | 0.598538 | tig0043600:+7553 | Msa1463760:intergenic |
| AAAGTCAGCACTAGCACTAG+TGG | 0.602500 | tig0043600:+5894 | Msa1463760:intergenic |
| AACTCAGGAGTACTTGCTCT+AGG | 0.603509 | tig0043600:+7568 | Msa1463760:intergenic |
| TGGCATTTACCATGGGAAAG+GGG | 0.607320 | tig0043600:-5061 | Msa1463760:three_prime_UTR |
| GAAAGGATTCCCCTTTCCCA+TGG | 0.614702 | tig0043600:+5052 | Msa1463760:intergenic |
| GGTGGCATTTACCATGGGAA+AGG | 0.618400 | tig0043600:-5063 | Msa1463760:three_prime_UTR |
| TGTATGGTGGCATTTACCAT+GGG | 0.618417 | tig0043600:-5068 | Msa1463760:three_prime_UTR |
| ATGTGAAGCGAGTAAGTCCA+TGG | 0.621045 | tig0043600:-6515 | Msa1463760:CDS |
| GTACCTGAAGAAGTCTCCAA+GGG | 0.630331 | tig0043600:+7383 | Msa1463760:intergenic |
| AGTACCTGAAGAAGTCTCCA+AGG | 0.632710 | tig0043600:+7382 | Msa1463760:intergenic |
| AGTGAGTGGTGAATCAGTGA+AGG | 0.641115 | tig0043600:-7641 | Msa1463760:five_prime_UTR |
| GAAGAAGATATACAACACAA+AGG | 0.641708 | tig0043600:+6345 | Msa1463760:intergenic |
| CCTGGCTCCCTGAATGCCTG+CGG | 0.642327 | tig0043600:+6302 | Msa1463760:intergenic |
| GGTGGAAGAGTGAAAGTGAG+TGG | 0.649082 | tig0043600:-7655 | Msa1463760:five_prime_UTR |
| GGAACTAGGAATGCTGAACG+TGG | 0.666679 | tig0043600:-5375 | Msa1463760:CDS |
| GAAACTGGACAACATCGAGA+GGG | 0.676432 | tig0043600:+6400 | Msa1463760:intergenic |
| GAAGCGAGTAAGTCCATGGT+TGG | 0.687985 | tig0043600:-6511 | Msa1463760:CDS |
| TCGCACCCTTCTCACCACCA+AGG | 0.717374 | tig0043600:-6455 | Msa1463760:CDS |
| TACCTGAAGAAGTCTCCAAG+GGG | 0.745887 | tig0043600:+7384 | Msa1463750:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTGAAACTATTAAT+TGG | - | tig0043600:7610-7629 | Msa1463760:CDS | 10.0% |
| !!! | TAAATTTGAAACTATTAATT+GGG | - | tig0043600:7611-7630 | Msa1463760:CDS | 10.0% |
| !!! | GTTTGTTTTTTATTTTGTTT+AGG | - | tig0043600:5376-5395 | Msa1463760:CDS | 15.0% |
| !!! | TTCCTTTTTTTTTTTTTTTG+AGG | - | tig0043600:5806-5825 | Msa1463760:CDS | 15.0% |
| !!! | TCCTTTTTTTTTTTTTTTGA+GGG | - | tig0043600:5807-5826 | Msa1463760:CDS | 15.0% |
| !! | TTAATCCATGAATATATTTA+TGG | - | tig0043600:5854-5873 | Msa1463760:CDS | 15.0% |
| !! | GAAAAATATTCATATTCATA+TGG | + | tig0043600:7080-7099 | Msa1463760:intergenic | 15.0% |
| !! | CAATATTTGATTAAATTTGA+AGG | + | tig0043600:7484-7503 | Msa1463760:intergenic | 15.0% |
| !! | CTTCAAATTTAATCAAATAT+TGG | - | tig0043600:7482-7501 | Msa1463760:CDS | 15.0% |
| !! | AAATTTAAAAAAGTTGCAAA+TGG | + | tig0043600:7598-7617 | Msa1463760:intergenic | 15.0% |
| !!! | AACTTAACAAGAATTTGTTA+AGG | + | tig0043600:5427-5446 | Msa1463760:intergenic | 20.0% |
| !!! | ATTTTTAAGCTGTTTTGTTA+AGG | - | tig0043600:5466-5485 | Msa1463760:intron | 20.0% |
| !! | TATGTATAATGTATAACCAA+TGG | - | tig0043600:5549-5568 | Msa1463760:intron | 20.0% |
| !! | ATTCAATATTTACTAGAAAC+TGG | + | tig0043600:5593-5612 | Msa1463760:intergenic | 20.0% |
| !! | ACACTAACTGAAATAATATT+TGG | - | tig0043600:5636-5655 | Msa1463760:intron | 20.0% |
| !!! | ATGTAAAATACTCTTGTTTA+TGG | - | tig0043600:5708-5727 | Msa1463760:CDS | 20.0% |
| !! | TCCCTCAAAAAAAAAAAAAA+AGG | + | tig0043600:5811-5830 | Msa1463760:intergenic | 20.0% |
| !! | TACAACCATAAATATATTCA+TGG | + | tig0043600:5862-5881 | Msa1463760:intergenic | 20.0% |
| !! | TCAAATTGGAATATCTTTAT+CGG | - | tig0043600:6433-6452 | Msa1463760:CDS | 20.0% |
| !! | AGAAAAAAAACTATTATTCC+TGG | - | tig0043600:7529-7548 | Msa1463760:CDS | 20.0% |
| ! | AAAAAACAAACTCCAAACAT+AGG | + | tig0043600:5367-5386 | Msa1463760:intergenic | 25.0% |
| !!! | ACAAGAATTTGTTAAGGAAT+CGG | + | tig0043600:5421-5440 | Msa1463760:intergenic | 25.0% |
| !!! | AAAGACTCTTTTTTAGAGTT+TGG | - | tig0043600:5506-5525 | Msa1463760:CDS | 25.0% |
| ! | AATATTTGGTATTTACCTAC+CGG | - | tig0043600:5650-5669 | Msa1463760:intron | 25.0% |
| ! | AGGGAGTAAAATAAAATTCT+TGG | - | tig0043600:5826-5845 | Msa1463760:CDS | 25.0% |
| !! | CGTTTATATTTAAGACTAGA+TGG | - | tig0043600:6020-6039 | Msa1463760:CDS | 25.0% |
| ! | AAGAAGATATACAACACAAA+GGG | + | tig0043600:6364-6383 | Msa1463760:intergenic | 25.0% |
| ! | TTTGTGTTGTATATCTTCTT+CGG | - | tig0043600:6364-6383 | Msa1463760:CDS | 25.0% |
| !!! | ACTGAAATTTGTTGTTGTTA+AGG | + | tig0043600:6466-6485 | Msa1463760:intergenic | 25.0% |
| ! | AACAACAACAAATTTCAGTT+AGG | - | tig0043600:6467-6486 | Msa1463760:CDS | 25.0% |
| ! | TTTCTTTGCTCTTATTATCA+TGG | + | tig0043600:6547-6566 | Msa1463760:intergenic | 25.0% |
| ! | TGAAGAACTTTATAGAAAAC+TGG | - | tig0043600:6931-6950 | Msa1463760:intron | 25.0% |
| ! | AAACAAGAAAAATACCTGAA+GGG | + | tig0043600:7046-7065 | Msa1463760:intergenic | 25.0% |
| !! | ACGTAAACTTTTTACATTGT+CGG | - | tig0043600:7124-7143 | Msa1463760:intron | 25.0% |
| ! | AAAAAGATTGACAATTCTGA+TGG | - | tig0043600:7180-7199 | Msa1463760:intron | 25.0% |
| !!! | AGGTACTAAACATTTTTTTG+TGG | - | tig0043600:7284-7303 | Msa1463760:intron | 25.0% |
| !!! | TTTTTTGTGGAATTATTTGC+AGG | - | tig0043600:7297-7316 | Msa1463760:intron | 25.0% |
| !! | TTTTTGTGGAATTATTTGCA+GGG | - | tig0043600:7298-7317 | Msa1463760:intron | 25.0% |
| ! | TTCTAATGTTAACCAACATT+TGG | - | tig0043600:7569-7588 | Msa1463760:CDS | 25.0% |
| !!! | TATTAATTGGGTTTTGTGTA+TGG | - | tig0043600:7623-7642 | Msa1463760:exon | 25.0% |
| TGCTAGTAATCAAACATTTG+AGG | - | tig0043600:5105-5124 | Msa1463760:three_prime_UTR | 30.0% | |
| ACTAATCCTAGAAGAATCTT+CGG | + | tig0043600:5245-5264 | Msa1463760:intergenic | 30.0% | |
| !! | AAGATTCTTCTAGGATTAGT+TGG | - | tig0043600:5245-5264 | Msa1463760:three_prime_UTR | 30.0% |
| CATATTCATGAATTAAGCCT+TGG | + | tig0043600:5691-5710 | Msa1463760:intergenic | 30.0% | |
| ! | TCTTATTTCAAACAAGCGAA+TGG | - | tig0043600:5749-5768 | Msa1463760:CDS | 30.0% |
| !! | CCTAATGTTTGTTGTTTACT+CGG | - | tig0043600:5932-5951 | Msa1463760:CDS | 30.0% |
| !! | CTAATGTTTGTTGTTTACTC+GGG | - | tig0043600:5933-5952 | Msa1463760:CDS | 30.0% |
| GGTTTGTATATAAGCAAACA+TGG | - | tig0043600:5954-5973 | Msa1463760:CDS | 30.0% | |
| AGCAAACATGGATAAGTATT+TGG | - | tig0043600:5966-5985 | Msa1463760:CDS | 30.0% | |
| AACAACCTTGATTGAACTTA+TGG | - | tig0043600:6121-6140 | Msa1463760:CDS | 30.0% | |
| TATTGCCATAAGTTCAATCA+AGG | + | tig0043600:6129-6148 | Msa1463760:intergenic | 30.0% | |
| TTCACATTGTGTAGTAAATC+TGG | + | tig0043600:6179-6198 | Msa1463760:intergenic | 30.0% | |
| ! | AAAATGTTGGTATCTGAAAC+TGG | + | tig0043600:6325-6344 | Msa1463760:intergenic | 30.0% |
| ! | TTTCAGATACCAACATTTTC+AGG | - | tig0043600:6326-6345 | Msa1463760:CDS | 30.0% |
| TACAACACAAAGGGTTAAAA+GGG | + | tig0043600:6355-6374 | Msa1463760:intergenic | 30.0% | |
| ATACAACACAAAGGGTTAAA+AGG | + | tig0043600:6356-6375 | Msa1463760:intergenic | 30.0% | |
| GAAGAAGATATACAACACAA+AGG | + | tig0043600:6365-6384 | Msa1463760:intergenic | 30.0% | |
| ! | ATATCATGTCTGTTGACTAT+AGG | - | tig0043600:6569-6588 | Msa1463760:intron | 30.0% |
| AAATTCTCACAAGAGAAGTT+TGG | - | tig0043600:6592-6611 | Msa1463760:intron | 30.0% | |
| !! | AGACACCAATTTTTGCTTTT+TGG | - | tig0043600:6641-6660 | Msa1463760:intron | 30.0% |
| GTTGACCAAAAAGCAAAAAT+TGG | + | tig0043600:6649-6668 | Msa1463760:intergenic | 30.0% | |
| ATTAGATACTGGTCATTGTA+AGG | - | tig0043600:6850-6869 | Msa1463760:intron | 30.0% | |
| GAAACAAGAAAAATACCTGA+AGG | + | tig0043600:7047-7066 | Msa1463760:intergenic | 30.0% | |
| TTAGATGCATCAAATAAGAC+AGG | - | tig0043600:7356-7375 | Msa1463760:intron | 30.0% | |
| TCTTAAACAAAGATGCTCAT+AGG | + | tig0043600:7383-7402 | Msa1463760:intergenic | 30.0% | |
| TATGTGATTTCAGAAGTTGA+AGG | - | tig0043600:7436-7455 | Msa1463760:CDS | 30.0% | |
| ! | ATAGTAATTTTGCATGATCC+AGG | + | tig0043600:7550-7569 | Msa1463760:intergenic | 30.0% |
| GAAGTCTTGATACAAAACTC+AGG | + | tig0043600:5157-5176 | Msa1463760:intergenic | 35.0% | |
| AAGCTTCCATGAGAATTCAA+TGG | - | tig0043600:5185-5204 | Msa1463760:three_prime_UTR | 35.0% | |
| AGAACACCATTGAATTCTCA+TGG | + | tig0043600:5194-5213 | Msa1463760:intergenic | 35.0% | |
| ATGAGAATTCAATGGTGTTC+TGG | - | tig0043600:5193-5212 | Msa1463760:three_prime_UTR | 35.0% | |
| TGAGAATTCAATGGTGTTCT+GGG | - | tig0043600:5194-5213 | Msa1463760:three_prime_UTR | 35.0% | |
| !! | TTCTAGGATTAGTTGGTTCA+TGG | - | tig0043600:5252-5271 | Msa1463760:three_prime_UTR | 35.0% |
| !! | TCTAGGATTAGTTGGTTCAT+GGG | - | tig0043600:5253-5272 | Msa1463760:three_prime_UTR | 35.0% |
| AAGCATTTGAGCAAAACCAT+TGG | + | tig0043600:5568-5587 | Msa1463760:intergenic | 35.0% | |
| TTCAGTTAGTGTTCGAACTT+AGG | + | tig0043600:5628-5647 | Msa1463760:intergenic | 35.0% | |
| CCGAGTAAACAACAAACATT+AGG | + | tig0043600:5935-5954 | Msa1463760:intergenic | 35.0% | |
| GATCAAATTGAGCTCAACTA+AGG | + | tig0043600:6077-6096 | Msa1463760:intergenic | 35.0% | |
| TATGGCAATAACCTAATTGC+AGG | - | tig0043600:6139-6158 | Msa1463760:CDS | 35.0% | |
| GAAATCGTCTCTCGATTATT+TGG | + | tig0043600:6500-6519 | Msa1463760:intergenic | 35.0% | |
| AATCGAGAGACGATTTCTAA+TGG | - | tig0043600:6503-6522 | Msa1463760:CDS | 35.0% | |
| ! | ATTTGTTGCTCAGTGAGAAT+TGG | + | tig0043600:6671-6690 | Msa1463760:intergenic | 35.0% |
| ! | TGTGTTGTTGTCCAAGAAAA+AGG | - | tig0043600:6715-6734 | Msa1463760:intron | 35.0% |
| ! | CTTCTCTTTGTCCTTTTTCT+TGG | + | tig0043600:6729-6748 | Msa1463760:intergenic | 35.0% |
| AGAAAAAGGACAAAGAGAAG+TGG | - | tig0043600:6729-6748 | Msa1463760:intron | 35.0% | |
| ! | TGGTCATTGTAAGGTTTTCT+TGG | - | tig0043600:6859-6878 | Msa1463760:intron | 35.0% |
| ACCTTAGATTTGTCATGTGT+TGG | - | tig0043600:6902-6921 | Msa1463760:intron | 35.0% | |
| ACCAACACATGACAAATCTA+AGG | + | tig0043600:6906-6925 | Msa1463760:intergenic | 35.0% | |
| AGAAAACTGGCTAAGATGTT+TGG | - | tig0043600:6944-6963 | Msa1463760:intron | 35.0% | |
| !! | TTGACAATTCTGATGGATTC+AGG | - | tig0043600:7187-7206 | Msa1463760:intron | 35.0% |
| GTGTCTTTAGATGTGTATGA+AGG | - | tig0043600:7264-7283 | Msa1463760:intron | 35.0% | |
| TGCAAATGGAAACCAAATGT+TGG | + | tig0043600:7584-7603 | Msa1463760:intergenic | 35.0% | |
| !! | TAATTGGGTTTTGTGTATGG+TGG | - | tig0043600:7626-7645 | Msa1463760:exon | 35.0% |
| GAAGAATCTTCGGTTTCGAA+TGG | + | tig0043600:5235-5254 | Msa1463760:intergenic | 40.0% | |
| TCGAAACCGAAGATTCTTCT+AGG | - | tig0043600:5236-5255 | Msa1463760:three_prime_UTR | 40.0% | |
| ! | GGGAACTATTTCTTCTGTTC+AGG | - | tig0043600:5273-5292 | Msa1463760:three_prime_UTR | 40.0% |
| AGGTTGTTGATCCTATTCGT+TGG | - | tig0043600:5293-5312 | Msa1463760:three_prime_UTR | 40.0% | |
| CTACTCTCTTGTCCTATGTT+TGG | - | tig0043600:5352-5371 | Msa1463760:CDS | 40.0% | |
| TAACCTAATTGCAGGTCACT+TGG | - | tig0043600:6147-6166 | Msa1463760:CDS | 40.0% | |
| AACCTAATTGCAGGTCACTT+GGG | - | tig0043600:6148-6167 | Msa1463760:CDS | 40.0% | |
| ! | AAGTCCATGGTTGGTTGAAT+TGG | - | tig0043600:6205-6224 | Msa1463760:CDS | 40.0% |
| GATACCAATTCAACCAACCA+TGG | + | tig0043600:6212-6231 | Msa1463760:intergenic | 40.0% | |
| AATCCGGATGTTGTGGAAAA+CGG | + | tig0043600:6286-6305 | Msa1463760:intergenic | 40.0% | |
| AAAGGGTTGCCTGAAAATGT+TGG | + | tig0043600:6338-6357 | Msa1463760:intergenic | 40.0% | |
| TATTCCAATTTGAGCATGCC+TGG | + | tig0043600:6426-6445 | Msa1463760:intergenic | 40.0% | |
| ! | TGGCAACTTGGATTAGATAC+TGG | - | tig0043600:6839-6858 | Msa1463760:intron | 40.0% |
| ! | TAAGGTTTTCTTGGAGTCAC+AGG | - | tig0043600:6868-6887 | Msa1463760:intron | 40.0% |
| !! | ACAGGTGCTGTTAAACAAAC+TGG | - | tig0043600:7013-7032 | Msa1463760:intron | 40.0% |
| ATTTGCAGGGTTTGTATCAC+AGG | - | tig0043600:7311-7330 | Msa1463760:intron | 40.0% | |
| TGTATGGTGGCATTTACCAT+GGG | - | tig0043600:7639-7658 | Msa1463760:five_prime_UTR | 40.0% | |
| AGTGAGTGGTGAATCAGTGA+AGG | - | tig0043600:5066-5085 | Msa1463760:three_prime_UTR | 45.0% | |
| !! | AACTCAGGAGTACTTGCTCT+AGG | + | tig0043600:5142-5161 | Msa1463760:intergenic | 45.0% |
| !! | TTCAATGGTGTTCTGGGATG+AGG | - | tig0043600:5200-5219 | Msa1463760:three_prime_UTR | 45.0% |
| AGAAGTCTCCAAGGGGAATT+AGG | + | tig0043600:5319-5338 | Msa1463760:intergenic | 45.0% | |
| TACCTGAAGAAGTCTCCAAG+GGG | + | tig0043600:5326-5345 | Msa1463760:intergenic | 45.0% | |
| GTACCTGAAGAAGTCTCCAA+GGG | + | tig0043600:5327-5346 | Msa1463760:intergenic | 45.0% | |
| AGTACCTGAAGAAGTCTCCA+AGG | + | tig0043600:5328-5347 | Msa1463760:intergenic | 45.0% | |
| TTGGCTATCAAGAGCTTGAC+CGG | + | tig0043600:5672-5691 | Msa1463760:intergenic | 45.0% | |
| ATGTGAAGCGAGTAAGTCCA+TGG | - | tig0043600:6192-6211 | Msa1463760:CDS | 45.0% | |
| !! | TTCTTCCTTGGTGGTGAGAA+GGG | + | tig0043600:6260-6279 | Msa1463760:intergenic | 45.0% |
| !! | TTTCTTCCTTGGTGGTGAGA+AGG | + | tig0043600:6261-6280 | Msa1463760:intergenic | 45.0% |
| AAACGGAGTTTCTTCCTTGG+TGG | + | tig0043600:6269-6288 | Msa1463760:intergenic | 45.0% | |
| GGAAAACGGAGTTTCTTCCT+TGG | + | tig0043600:6272-6291 | Msa1463760:intergenic | 45.0% | |
| ! | ACTCCGTTTTCCACAACATC+CGG | - | tig0043600:6280-6299 | Msa1463760:CDS | 45.0% |
| ACAACATCGAGAGGGAAATC+CGG | + | tig0043600:6302-6321 | Msa1463760:intergenic | 45.0% | |
| GAAACTGGACAACATCGAGA+GGG | + | tig0043600:6310-6329 | Msa1463760:intergenic | 45.0% | |
| TGAAACTGGACAACATCGAG+AGG | + | tig0043600:6311-6330 | Msa1463760:intergenic | 45.0% | |
| ! | CTAGTGGTAGAGGATTTTGC+TGG | + | tig0043600:6800-6819 | Msa1463760:intergenic | 45.0% |
| AAAGTCAGCACTAGCACTAG+TGG | + | tig0043600:6816-6835 | Msa1463760:intergenic | 45.0% | |
| !!! | GTGCTAGTGCTGACTTTTGT+TGG | - | tig0043600:6819-6838 | Msa1463760:intron | 45.0% |
| !! | GCTGACTTTTGTTGGCAACT+TGG | - | tig0043600:6827-6846 | Msa1463760:intron | 45.0% |
| TTCTTGGAGTCACAGGATGT+TGG | - | tig0043600:6875-6894 | Msa1463760:intron | 45.0% | |
| GTACTCTATCGTGATGCAAC+AGG | - | tig0043600:6995-7014 | Msa1463760:intron | 45.0% | |
| AAACTGGTGAAGAACCCTTC+AGG | - | tig0043600:7029-7048 | Msa1463760:intron | 45.0% | |
| CAGGCAGCAAAGATACTAGA+AGG | - | tig0043600:7206-7225 | Msa1463760:intron | 45.0% | |
| GGGTTTGTATCACAGGAACT+AGG | - | tig0043600:7318-7337 | Msa1463760:intron | 45.0% | |
| GTGTATGGTGGCATTTACCA+TGG | - | tig0043600:7638-7657 | Msa1463760:five_prime_UTR | 45.0% | |
| GTGGCATTTACCATGGGAAA+GGG | - | tig0043600:7645-7664 | Msa1463760:five_prime_UTR | 45.0% | |
| TGGCATTTACCATGGGAAAG+GGG | - | tig0043600:7646-7665 | Msa1463760:five_prime_UTR | 45.0% | |
| GGGGAATTAGGCCAACGAAT+AGG | + | tig0043600:5307-5326 | Msa1463760:intergenic | 50.0% | |
| ! | TTCGTTGGCCTAATTCCCCT+TGG | - | tig0043600:5308-5327 | Msa1463760:three_prime_UTR | 50.0% |
| TTCCCCTTGGAGACTTCTTC+AGG | - | tig0043600:5321-5340 | Msa1463760:exon | 50.0% | |
| CTATCAAGAGCTTGACCGGT+AGG | + | tig0043600:5668-5687 | Msa1463760:intergenic | 50.0% | |
| ! | GGTCAAGCTCTTGATAGCCA+AGG | - | tig0043600:5671-5690 | Msa1463760:intron | 50.0% |
| GTCCCAAGTGACCTGCAATT+AGG | + | tig0043600:6153-6172 | Msa1463760:intergenic | 50.0% | |
| GAAGCGAGTAAGTCCATGGT+TGG | - | tig0043600:6196-6215 | Msa1463760:CDS | 50.0% | |
| AGAGGGAAATCCGGATGTTG+TGG | + | tig0043600:6293-6312 | Msa1463760:intergenic | 50.0% | |
| AATTATAACGCTCCTGCCGC+AGG | - | tig0043600:6389-6408 | Msa1463760:CDS | 50.0% | |
| AGCACTAGCACTAGTGGTAG+AGG | + | tig0043600:6810-6829 | Msa1463760:intergenic | 50.0% | |
| GGAACTAGGAATGCTGAACG+TGG | - | tig0043600:7332-7351 | Msa1463760:intron | 50.0% | |
| GGTGGCATTTACCATGGGAA+AGG | - | tig0043600:7644-7663 | Msa1463760:five_prime_UTR | 50.0% | |
| GGAGCCAGGCATGCTCAAAT+TGG | - | tig0043600:6419-6438 | Msa1463760:CDS | 55.0% | |
| TCGCACCCTTCTCACCACCA+AGG | - | tig0043600:6252-6271 | Msa1463760:CDS | 60.0% | |
| GCTCCTGCCGCAGGCATTCA+GGG | - | tig0043600:6398-6417 | Msa1463760:CDS | 65.0% | |
| CCTGGCTCCCTGAATGCCTG+CGG | + | tig0043600:6408-6427 | Msa1463760:intergenic | 65.0% | |
| CGCTCCTGCCGCAGGCATTC+AGG | - | tig0043600:6397-6416 | Msa1463760:CDS | 70.0% | |
| GCTCCCTGAATGCCTGCGGC+AGG | + | tig0043600:6404-6423 | Msa1463760:intergenic | 70.0% | |
| CCGCAGGCATTCAGGGAGCC+AGG | - | tig0043600:6405-6424 | Msa1463760:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0043600 | gene | 5053 | 7676 | 5053 | ID=Msa1463760;Name=Msa1463760 |
| tig0043600 | mRNA | 5053 | 7676 | 5053 | ID=Msa1463760-mRNA-1;Parent=Msa1463760;Name=Msa1463760-mRNA-1;_AED=0.09;_eAED=0.09;_QI=41|1|1|1|1|1|4|276|428 |
| tig0043600 | exon | 5053 | 5410 | 5053 | ID=Msa1463760-mRNA-1:exon:24178;Parent=Msa1463760-mRNA-1 |
| tig0043600 | exon | 5502 | 5567 | 5502 | ID=Msa1463760-mRNA-1:exon:24177;Parent=Msa1463760-mRNA-1 |
| tig0043600 | exon | 5679 | 6568 | 5679 | ID=Msa1463760-mRNA-1:exon:24176;Parent=Msa1463760-mRNA-1 |
| tig0043600 | exon | 7387 | 7676 | 7387 | ID=Msa1463760-mRNA-1:exon:24175;Parent=Msa1463760-mRNA-1 |
| tig0043600 | five_prime_UTR | 7636 | 7676 | 7636 | ID=Msa1463760-mRNA-1:five_prime_utr;Parent=Msa1463760-mRNA-1 |
| tig0043600 | CDS | 7387 | 7635 | 7387 | ID=Msa1463760-mRNA-1:cds;Parent=Msa1463760-mRNA-1 |
| tig0043600 | CDS | 5679 | 6568 | 5679 | ID=Msa1463760-mRNA-1:cds;Parent=Msa1463760-mRNA-1 |
| tig0043600 | CDS | 5502 | 5567 | 5502 | ID=Msa1463760-mRNA-1:cds;Parent=Msa1463760-mRNA-1 |
| tig0043600 | CDS | 5329 | 5410 | 5329 | ID=Msa1463760-mRNA-1:cds;Parent=Msa1463760-mRNA-1 |
| tig0043600 | three_prime_UTR | 5053 | 5328 | 5053 | ID=Msa1463760-mRNA-1:three_prime_utr;Parent=Msa1463760-mRNA-1 |
| Gene Sequence |
| Protein sequence |
