AlfalfaGEDB | Msa0426810

M. sativa cultivar zhongmu-4 / Msa0426810

KEGG: K14165
GO: GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005982 GO:0005983 GO:0006073 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009507 GO:0009536 GO:0009987 GO:0016052 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0030246 GO:0030247 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046838 GO:0050308 GO:0071704 GO:1901575 GO:2001070
PFAM: PF00782.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426810	XP_013461538.1	97.552	286	7	0	1	286	1	286	0.0	591

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426810	sp\|Q9SRK5\|LSF2_ARATH	72.692	260	62	3	28	286	31	282	5.37e-140	398

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426810	A0A072V2I1	97.552	286	7	0	1	286	1	286	0.0	591

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0426810	-0.904351	1.344650e-79	-8.615850e-47
Msa0003280	Msa0426810	0.815726	7.975168e-52	-8.615850e-47
Msa0003470	Msa0426810	0.837238	5.849915e-57	-8.615850e-47
Msa0005350	Msa0426810	0.845882	3.077061e-59	-8.615850e-47
Msa0006820	Msa0426810	0.802860	4.591462e-49	-8.615850e-47
Msa0008850	Msa0426810	0.818101	2.336248e-52	-8.615850e-47
Msa0011720	Msa0426810	0.813729	2.209018e-51	-8.615850e-47
Msa0017120	Msa0426810	0.806125	9.573429e-50	-8.615850e-47
Msa0023830	Msa0426810	-0.844762	6.184860e-59	-8.615850e-47
Msa0027580	Msa0426810	0.813005	3.186378e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426810	MtrunA17_Chr3g0129011	97.552	286	7	0	1	286	1	286	0.0	591
Msa0426810	MtrunA17_Chr1g0197631	45.745	188	95	3	66	247	68	254	5.83e-44	153
Msa0426810	MtrunA17_Chr7g0228091	34.137	249	153	5	2	247	247	487	1.83e-30	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0426810	AT3G10940.1	72.692	260	62	3	28	286	31	282	5.46e-141	398
Msa0426810	AT3G52180.3	42.927	205	115	2	65	268	66	269	1.86e-46	157
Msa0426810	AT3G52180.2	42.927	205	115	2	65	268	66	269	3.50e-46	157
Msa0426810	AT3G52180.1	42.927	205	115	2	65	268	66	269	5.69e-45	156
Msa0426810	AT3G52180.4	44.571	175	95	2	95	268	1	174	2.31e-39	139
Msa0426810	AT3G01510.3	35.983	239	144	5	9	247	69	298	4.69e-32	123
Msa0426810	AT3G01510.2	35.983	239	144	5	9	247	69	298	4.69e-32	123
Msa0426810	AT3G01510.1	38.743	191	114	3	57	247	253	440	1.05e-31	124

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Find 69 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAACAACAACTTGTGT+AGG	0.570717	3_2:+77441326	None:intergenic
AAATAAGCAATTGTCACTGC+TGG	0.476094	3_2:+77442389	None:intergenic
AAATCTACATTCTACAATCA+TGG	0.497529	3_2:+77441150	None:intergenic
AACCGTGTCCGCGCTCTTCG+TGG	0.426634	3_2:-77441497	Msa0426810:CDS
AACTTGAAATTAGACACATG+AGG	0.731891	3_2:-77443016	Msa0426810:CDS
AAGAGAATCCTACCAGCAAA+AGG	0.453326	3_2:-77444298	Msa0426810:CDS
AAGCAGTGTCATCCTTAGAA+TGG	0.458306	3_2:-77442472	Msa0426810:CDS
ACAAGGAGCAACTTATGATT+TGG	0.358184	3_2:-77441609	Msa0426810:CDS
AGAACAGAATTTAGATTCAA+TGG	0.367500	3_2:+77441100	None:intergenic
AGACTAATACCTAATTCGTC+AGG	0.528930	3_2:+77441472	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCAAACAAGCAAAAGAACAA+TGG	-	chr3_2:77441067-77441086	Msa0426810:three_prime_UTR	30.0%
AAAGCAGAGGAAACAAAAAT+CGG	-	chr3_2:77441154-77441173	Msa0426810:three_prime_UTR	30.0%
TTCCTATCAACTACTCTATT+AGG	-	chr3_2:77441192-77441211	Msa0426810:three_prime_UTR	30.0%
ATCCTAATAGAGTAGTTGAT+AGG	+	chr3_2:77441197-77441216	None:intergenic	30.0%
TAGGAATTGGCAAAACAAAT+GGG	+	chr3_2:77441396-77441415	None:intergenic	30.0%
ATAGGAATTGGCAAAACAAA+TGG	+	chr3_2:77441397-77441416	None:intergenic	30.0%
TATGAATACTCTTGAGAGAT+AGG	-	chr3_2:77441459-77441478	Msa0426810:intron	30.0%
CAAACAAGATACTATTGGAA+TGG	+	chr3_2:77441914-77441933	None:intergenic	30.0%
CATTCCAATAGTATCTTGTT+TGG	-	chr3_2:77441912-77441931	Msa0426810:intron	30.0%
CTTCTATAAACTATCTCAGA+TGG	+	chr3_2:77442062-77442081	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_2	gene	77441052	77444523	77441052	ID=Msa0426810;Name=Msa0426810
chr3_2	mRNA	77441052	77444523	77441052	ID=Msa0426810-mRNA-1;Parent=Msa0426810;Name=Msa0426810-mRNA-1;_AED=0.13;_eAED=0.13;_QI=34\|1\|1\|1\|0.75\|0.6\|5\|324\|286
chr3_2	exon	77441052	77441367	77441052	ID=Msa0426810-mRNA-1:exon:20192;Parent=Msa0426810-mRNA-1
chr3_2	exon	77441482	77441693	77441482	ID=Msa0426810-mRNA-1:exon:20191;Parent=Msa0426810-mRNA-1
chr3_2	exon	77442367	77442537	77442367	ID=Msa0426810-mRNA-1:exon:20190;Parent=Msa0426810-mRNA-1
chr3_2	exon	77443010	77443215	77443010	ID=Msa0426810-mRNA-1:exon:20189;Parent=Msa0426810-mRNA-1
chr3_2	exon	77444210	77444523	77444210	ID=Msa0426810-mRNA-1:exon:20188;Parent=Msa0426810-mRNA-1
chr3_2	five_prime_UTR	77444490	77444523	77444490	ID=Msa0426810-mRNA-1:five_prime_utr;Parent=Msa0426810-mRNA-1
chr3_2	CDS	77444210	77444489	77444210	ID=Msa0426810-mRNA-1:cds;Parent=Msa0426810-mRNA-1
chr3_2	CDS	77443010	77443215	77443010	ID=Msa0426810-mRNA-1:cds;Parent=Msa0426810-mRNA-1
chr3_2	CDS	77442367	77442537	77442367	ID=Msa0426810-mRNA-1:cds;Parent=Msa0426810-mRNA-1
chr3_2	CDS	77441490	77441693	77441490	ID=Msa0426810-mRNA-1:cds;Parent=Msa0426810-mRNA-1
chr3_2	three_prime_UTR	77441482	77441489	77441482	ID=Msa0426810-mRNA-1:three_prime_utr;Parent=Msa0426810-mRNA-1
chr3_2	three_prime_UTR	77441052	77441367	77441052	ID=Msa0426810-mRNA-1:three_prime_utr;Parent=Msa0426810-mRNA-1

Gene Sequence

>Msa0426810

ATGGAAAGTGTAAGTAACATTGGTTTCTCTTCAACATTCAGAGCTTCTTTGGACACAAAAGTACTTTCAAAGCAGAGGAAACAAAAATCGGCATGCAGTTTTATGGTTCCTATCAACTACTCTATTAGGATGAACAAAATTTGTTGTACACTATCAGAAAGTGGGATTGAAGAGAATCCTACCAGCAAAAGGGTATCTAAATCTAATGATTTGATGGAAGAATACAATATAGCTATGAAGAAGATGATGAGAAACCCTTATGAGTATCATCACGATCTGGGTATGAATTATACAGTTATAACTGACAATTTGATTGTGGGGTCCCAACCACAGAAACCTGAAGATGTAGATCACCTTAAGAAGGAAGAAGGTGTGGCATATATTCTAAACTTGCAACAGGATAAGGATGCTGAGTTTTGGGGAATAGACTTGCAGTCAATAGTAAAAAAGTGTCGCGAACTTGAAATTAGACACATGAGGAGACCTGCAGTAGACTTTGATCCAAACTCTTTGCGAAGTGCACTACCTAAAGCAGTGTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCACTGTACTGCAGGACTTGGAAGAGCTCCAGCAGTGACAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCCTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACAAGGAGCAACTTATGATTTGGCTAAAAATGATCCATGGAAGGAGCCATTTGAGAGTCTTCCAGACCATGCTTTTGGGGATATAGCAGATTGGGAGAGGAACCTGATTCAAAACCGTGTCCGCGCTCTTCGTGGAACCTGA

Protein sequence

>Msa0426810

MESVSNIGFSSTFRASLDTKVLSKQRKQKSACSFMVPINYSIRMNKICCTLSESGIEENPTSKRVSKSNDLMEEYNIAMKKMMRNPYEYHHDLGMNYTVITDNLIVGSQPQKPEDVDHLKKEEGVAYILNLQQDKDAEFWGIDLQSIVKKCRELEIRHMRRPAVDFDPNSLRSALPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVTIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIQGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNRVRALRGT*