AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0426810


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426810 MtrunA17_Chr3g0129011 97.552 286 7 0 1 286 1 286 0.0 591
Msa0426810 MtrunA17_Chr1g0197631 45.745 188 95 3 66 247 68 254 5.83e-44 153
Msa0426810 MtrunA17_Chr7g0228091 34.137 249 153 5 2 247 247 487 1.83e-30 120
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0426810 AT3G10940.1 72.692 260 62 3 28 286 31 282 5.46e-141 398
Msa0426810 AT3G52180.3 42.927 205 115 2 65 268 66 269 1.86e-46 157
Msa0426810 AT3G52180.2 42.927 205 115 2 65 268 66 269 3.50e-46 157
Msa0426810 AT3G52180.1 42.927 205 115 2 65 268 66 269 5.69e-45 156
Msa0426810 AT3G52180.4 44.571 175 95 2 95 268 1 174 2.31e-39 139
Msa0426810 AT3G01510.3 35.983 239 144 5 9 247 69 298 4.69e-32 123
Msa0426810 AT3G01510.2 35.983 239 144 5 9 247 69 298 4.69e-32 123
Msa0426810 AT3G01510.1 38.743 191 114 3 57 247 253 440 1.05e-31 124

Find 69 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATACTACATGGAATATT+TGG 0.229020 3_2:+77441208 None:intergenic
TGACAATTGCTTATTTGTTC+TGG 0.251643 3_2:-77442382 Msa0426810:CDS
TTCAACATTCAGAGCTTCTT+TGG 0.262998 3_2:-77444438 Msa0426810:CDS
AGTCTTCCAGACCATGCTTT+TGG 0.273596 3_2:-77441554 Msa0426810:CDS
GAATATTTGGTACCAGTTAC+AGG 0.278378 3_2:+77441221 None:intergenic
TCTAAGGATGACACTGCTTT+AGG 0.291760 3_2:+77442476 None:intergenic
TTAAGGTGATCTACATCTTC+AGG 0.294100 3_2:+77443137 None:intergenic
CTCAGAAATTGCCCATTCTA+AGG 0.297875 3_2:+77442460 None:intergenic
GATTGACAGGTCAGTGCTTA+TGG 0.313968 3_2:-77441354 Msa0426810:intron
CCACACCTTCTTCCTTCTTA+AGG 0.313968 3_2:+77443120 None:intergenic
AGGATAAGGATGCTGAGTTT+TGG 0.315172 3_2:-77443076 Msa0426810:CDS
ATCTTCAGGTTTCTGTGGTT+GGG 0.320424 3_2:+77443151 None:intergenic
TTCCTATCAACTACTCTATT+AGG 0.345630 3_2:-77444361 Msa0426810:CDS
AGTGCACTTCGCAAAGAGTT+TGG 0.350408 3_2:+77442500 None:intergenic
CATCTTCAGGTTTCTGTGGT+TGG 0.355320 3_2:+77443150 None:intergenic
ACAAGGAGCAACTTATGATT+TGG 0.358184 3_2:-77441609 Msa0426810:CDS
AGAACAGAATTTAGATTCAA+TGG 0.367500 3_2:+77441100 None:intergenic
CTTTGAAGTTAGCATATCAT+AGG 0.392022 3_2:+77441661 None:intergenic
ATAGGTATATTGCCTGTAAC+TGG 0.397078 3_2:-77441233 Msa0426810:three_prime_UTR
ATATTCCATGTAGTATTGAT+TGG 0.399152 3_2:-77441204 Msa0426810:three_prime_UTR
TCTAAACTTGCAACAGGATA+AGG 0.402340 3_2:-77443090 Msa0426810:CDS
GCATATTTATATAGATATAT+AGG 0.402680 3_2:-77441251 Msa0426810:three_prime_UTR
ATCTAAATCTAATGATTTGA+TGG 0.417040 3_2:-77444273 Msa0426810:CDS
AACCGTGTCCGCGCTCTTCG+TGG 0.426634 3_2:-77441497 Msa0426810:CDS
TTATGAGTATCATCACGATC+TGG 0.441184 3_2:-77444210 Msa0426810:CDS
CAAATAATAAATCAACTTTG+TGG 0.446478 3_2:-77441181 Msa0426810:three_prime_UTR
ATATATTCTAAACTTGCAAC+AGG 0.450710 3_2:-77443096 Msa0426810:CDS
AGATCGTGATGATACTCATA+AGG 0.451970 3_2:+77444212 None:intergenic
AAGAGAATCCTACCAGCAAA+AGG 0.453326 3_2:-77444298 Msa0426810:CDS
AAGCAGTGTCATCCTTAGAA+TGG 0.458306 3_2:-77442472 Msa0426810:CDS
CTCTCAAATGGCTCCTTCCA+TGG 0.458673 3_2:+77441575 None:intergenic
AAATAAGCAATTGTCACTGC+TGG 0.476094 3_2:+77442389 None:intergenic
ATAACTGACAATTTGATTGT+GGG 0.477333 3_2:-77443176 Msa0426810:CDS
ATATCCCCAAAAGCATGGTC+TGG 0.485767 3_2:+77441548 None:intergenic
TATAACTGACAATTTGATTG+TGG 0.487738 3_2:-77443177 Msa0426810:CDS
AAATCTACATTCTACAATCA+TGG 0.497529 3_2:+77441150 None:intergenic
TTCGTGGAACCTGACGAATT+AGG 0.502926 3_2:-77441481 Msa0426810:intron
GTTTATGTGCACTGTACTGC+AGG 0.506912 3_2:-77442425 Msa0426810:CDS
GAATTTAGATTCAATGGAAG+AGG 0.507146 3_2:+77441106 None:intergenic
AGCAGTGTCATCCTTAGAAT+GGG 0.512745 3_2:-77442471 Msa0426810:CDS
GGGATATAGCAGATTGGGAG+AGG 0.512919 3_2:-77441532 Msa0426810:CDS
ATGGAAAGTGTAAGTAACAT+TGG 0.515333 3_2:-77444467 Msa0426810:CDS
GATCGTGATGATACTCATAA+GGG 0.517872 3_2:+77444213 None:intergenic
TGGGCAATTTCTGAGGGAAA+AGG 0.518950 3_2:-77442452 Msa0426810:CDS
TGTTGTACACTATCAGAAAG+TGG 0.520687 3_2:-77444326 Msa0426810:CDS
TGGTCTGGAAGACTCTCAAA+TGG 0.522030 3_2:+77441563 None:intergenic
AGACTAATACCTAATTCGTC+AGG 0.528930 3_2:+77441472 None:intergenic
GTTGTACACTATCAGAAAGT+GGG 0.529921 3_2:-77444325 Msa0426810:CDS
ATCCTAATAGAGTAGTTGAT+AGG 0.532101 3_2:+77444359 None:intergenic
CTTAGAATGGGCAATTTCTG+AGG 0.532588 3_2:-77442459 Msa0426810:CDS
TCTACATCTTCAGGTTTCTG+TGG 0.534119 3_2:+77443146 None:intergenic
TATGAGTATCATCACGATCT+GGG 0.535409 3_2:-77444209 Msa0426810:intron
GTGCACTGTACTGCAGGACT+TGG 0.536912 3_2:-77442419 Msa0426810:CDS
ATTTGCCAATCAATACTACA+TGG 0.557524 3_2:+77441199 None:intergenic
GATCACCTTAAGAAGGAAGA+AGG 0.559918 3_2:-77443125 Msa0426810:CDS
AAAAGAACAACAACTTGTGT+AGG 0.570717 3_2:+77441326 None:intergenic
AGAGAATCCTACCAGCAAAA+GGG 0.572763 3_2:-77444297 Msa0426810:CDS
CCAAATAAAAGAGCAATACA+AGG 0.573394 3_2:-77441626 Msa0426810:CDS
TTAGAATGGGCAATTTCTGA+GGG 0.579734 3_2:-77442458 Msa0426810:CDS
TAACTGACAATTTGATTGTG+GGG 0.583931 3_2:-77443175 Msa0426810:CDS
AGATGTAGATCACCTTAAGA+AGG 0.584321 3_2:-77443132 Msa0426810:CDS
TTCCACGAAGAGCGCGGACA+CGG 0.585377 3_2:+77441495 None:intergenic
CTGCTATATCCCCAAAAGCA+TGG 0.592436 3_2:+77441543 None:intergenic
TCAAACAAGCAAAAGAACAA+TGG 0.593305 3_2:-77444486 Msa0426810:exon
CAAAAGTACTTTCAAAGCAG+AGG 0.607347 3_2:-77444412 Msa0426810:CDS
CCTTAAGAAGGAAGAAGGTG+TGG 0.624960 3_2:-77443120 Msa0426810:CDS
GTCAGGTTCCACGAAGAGCG+CGG 0.664911 3_2:+77441489 None:intergenic
CTAACTTCAAAGAGACCTTG+TGG 0.666372 3_2:-77441650 Msa0426810:CDS
AACTTGAAATTAGACACATG+AGG 0.731891 3_2:-77443016 Msa0426810:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACAATTAATGAAAAATAAT+TGG + chr3_2:77442282-77442301 None:intergenic 10.0%
!!! ATCACATTTTTAAAAAAATT+GGG + chr3_2:77442774-77442793 None:intergenic 10.0%
!!! TATCACATTTTTAAAAAAAT+TGG + chr3_2:77442775-77442794 None:intergenic 10.0%
!!! TTTTGTTTATTTACATTATT+AGG - chr3_2:77443016-77443035 Msa0426810:CDS 10.0%
!!! CTATTTATTTTCATAAAAAA+AGG + chr3_2:77443720-77443739 None:intergenic 10.0%
!!! AGAAAAACATATTTTGAAAT+TGG - chr3_2:77441763-77441782 Msa0426810:intron 15.0%
!!! AAAAATAATTGGTTTTCTTA+GGG + chr3_2:77442271-77442290 None:intergenic 15.0%
!! TAAATTAATGTACTAAAAAG+GGG + chr3_2:77442578-77442597 None:intergenic 15.0%
!! CTAAATTAATGTACTAAAAA+GGG + chr3_2:77442579-77442598 None:intergenic 15.0%
!! TCTAAATTAATGTACTAAAA+AGG + chr3_2:77442580-77442599 None:intergenic 15.0%
!!! TCACATTTTTAAAAAAATTG+GGG + chr3_2:77442773-77442792 None:intergenic 15.0%
!!! AAATTTTTCACAAATGAATA+TGG - chr3_2:77443840-77443859 Msa0426810:intron 15.0%
!! GCATATTTATATAGATATAT+AGG - chr3_2:77444302-77444321 Msa0426810:CDS 15.0%
!! ATCTAAATCTAATGATTTGA+TGG - chr3_2:77441280-77441299 Msa0426810:three_prime_UTR 20.0%
!! AATTGAATTTACATAGGAAT+TGG + chr3_2:77441409-77441428 None:intergenic 20.0%
!!! GAAAAATAATTGGTTTTCTT+AGG + chr3_2:77442272-77442291 None:intergenic 20.0%
!! TATAATTCATACCTGAAATT+AGG + chr3_2:77442352-77442371 None:intergenic 20.0%
!!! TTTTAAAAAAATTGGGGAAA+GGG + chr3_2:77442767-77442786 None:intergenic 20.0%
!!! TTTTTAAAAAAATTGGGGAA+AGG + chr3_2:77442768-77442787 None:intergenic 20.0%
!!! TTGACTGTTTTATATAACAA+AGG + chr3_2:77443568-77443587 None:intergenic 20.0%
!! CAAATAATAAATCAACTTTG+TGG - chr3_2:77444372-77444391 Msa0426810:CDS 20.0%
! AGTAGCAATTGAATTTACAT+AGG + chr3_2:77441415-77441434 None:intergenic 25.0%
! ATAGGAATGAATGAAATTGT+TGG - chr3_2:77441477-77441496 Msa0426810:intron 25.0%
!!! TTTTTTTCCTTCATTGCATT+TGG - chr3_2:77441565-77441584 Msa0426810:CDS 25.0%
!! TCTCCATTTCTTTTCAAAAT+TGG + chr3_2:77441706-77441725 None:intergenic 25.0%
!!! TATAGTTTTCGAGTTTATAG+AGG - chr3_2:77441736-77441755 Msa0426810:intron 25.0%
! GTCTTTATACACTAAAATTG+TGG - chr3_2:77441799-77441818 Msa0426810:intron 25.0%
! AAACAAGATACTATTGGAAT+GGG + chr3_2:77441913-77441932 None:intergenic 25.0%
! TTATCCAAACAAGATACTAT+TGG + chr3_2:77441919-77441938 None:intergenic 25.0%
! GAAAGCAACTTATATGAAAA+TGG + chr3_2:77442034-77442053 None:intergenic 25.0%
!! ACTTTTACAATTCATGTGAA+TGG - chr3_2:77442245-77442264 Msa0426810:intron 25.0%
! TATAACTGACAATTTGATTG+TGG - chr3_2:77442376-77442395 Msa0426810:CDS 25.0%
! ATAACTGACAATTTGATTGT+GGG - chr3_2:77442377-77442396 Msa0426810:CDS 25.0%
! ATATATTCTAAACTTGCAAC+AGG - chr3_2:77442457-77442476 Msa0426810:CDS 25.0%
! TTTAAAAAAATTGGGGAAAG+GGG + chr3_2:77442766-77442785 None:intergenic 25.0%
! ACTAAATATGTTTGTAGCTT+AGG - chr3_2:77442808-77442827 Msa0426810:intron 25.0%
!! TTAGGTTGTATTAGGAAATA+GGG - chr3_2:77442826-77442845 Msa0426810:intron 25.0%
! TAATTCAATCAAGAACAAGT+AGG + chr3_2:77442987-77443006 None:intergenic 25.0%
!!! TGTTTTTTGATTCAAAGACA+AGG + chr3_2:77443230-77443249 None:intergenic 25.0%
! TAGAAAAGACACTATAAATC+AGG - chr3_2:77443354-77443373 Msa0426810:intron 25.0%
! AGAAAAGACACTATAAATCA+GGG - chr3_2:77443355-77443374 Msa0426810:intron 25.0%
! AATAAGCTGAAAACAACTTA+TGG + chr3_2:77443472-77443491 None:intergenic 25.0%
! TTAAGTTATATATCCCATAC+AGG - chr3_2:77443779-77443798 Msa0426810:intron 25.0%
! TAAGTTATATATCCCATACA+GGG - chr3_2:77443780-77443799 Msa0426810:intron 25.0%
! TTAGCTGTGCAAAAAATAAA+AGG + chr3_2:77443866-77443885 None:intergenic 25.0%
! TCAATACTACATGGAATATT+TGG + chr3_2:77444348-77444367 None:intergenic 25.0%
!!! ATATTCCATGTAGTATTGAT+TGG - chr3_2:77444349-77444368 Msa0426810:CDS 25.0%
! AAATCTACATTCTACAATCA+TGG + chr3_2:77444406-77444425 None:intergenic 25.0%
! AGAACAGAATTTAGATTCAA+TGG + chr3_2:77444456-77444475 None:intergenic 25.0%
TCAAACAAGCAAAAGAACAA+TGG - chr3_2:77441067-77441086 Msa0426810:three_prime_UTR 30.0%
! ATGGAAAGTGTAAGTAACAT+TGG - chr3_2:77441086-77441105 Msa0426810:three_prime_UTR 30.0%
AAAGCAGAGGAAACAAAAAT+CGG - chr3_2:77441154-77441173 Msa0426810:three_prime_UTR 30.0%
TTCCTATCAACTACTCTATT+AGG - chr3_2:77441192-77441211 Msa0426810:three_prime_UTR 30.0%
ATCCTAATAGAGTAGTTGAT+AGG + chr3_2:77441197-77441216 None:intergenic 30.0%
TAGGAATTGGCAAAACAAAT+GGG + chr3_2:77441396-77441415 None:intergenic 30.0%
ATAGGAATTGGCAAAACAAA+TGG + chr3_2:77441397-77441416 None:intergenic 30.0%
TATGAATACTCTTGAGAGAT+AGG - chr3_2:77441459-77441478 Msa0426810:intron 30.0%
! ATAGAAGTATAGAACTACGA+AGG - chr3_2:77441536-77441555 Msa0426810:CDS 30.0%
! TGTGCCTTTTAGATTTAAAC+CGG - chr3_2:77441624-77441643 Msa0426810:CDS 30.0%
! CTTTTAGATTTAAACCGGAA+GGG - chr3_2:77441629-77441648 Msa0426810:CDS 30.0%
!! GCTCCAATTTTGAAAAGAAA+TGG - chr3_2:77441700-77441719 Msa0426810:intron 30.0%
CAAACAAGATACTATTGGAA+TGG + chr3_2:77441914-77441933 None:intergenic 30.0%
CATTCCAATAGTATCTTGTT+TGG - chr3_2:77441912-77441931 Msa0426810:intron 30.0%
CTTCTATAAACTATCTCAGA+TGG + chr3_2:77442062-77442081 None:intergenic 30.0%
!!! TTGCATTTTAGGATCTGTTT+GGG + chr3_2:77442172-77442191 None:intergenic 30.0%
!!! TTTGCATTTTAGGATCTGTT+TGG + chr3_2:77442173-77442192 None:intergenic 30.0%
TAACTGACAATTTGATTGTG+GGG - chr3_2:77442378-77442397 Msa0426810:CDS 30.0%
AACTTGAAATTAGACACATG+AGG - chr3_2:77442537-77442556 Msa0426810:intron 30.0%
CTAGATTATCACATAATGCA+TGG + chr3_2:77442616-77442635 None:intergenic 30.0%
! TTTGTAGCTTAGGTTGTATT+AGG - chr3_2:77442818-77442837 Msa0426810:intron 30.0%
! CTTAGGTTGTATTAGGAAAT+AGG - chr3_2:77442825-77442844 Msa0426810:intron 30.0%
CTTGAAGTGTGCATATAAAT+TGG + chr3_2:77442871-77442890 None:intergenic 30.0%
CAATTTATATGCACACTTCA+AGG - chr3_2:77442869-77442888 Msa0426810:intron 30.0%
CTTGAAACTATTTCAAGAGT+CGG + chr3_2:77442948-77442967 None:intergenic 30.0%
TGACAATTGCTTATTTGTTC+TGG - chr3_2:77443171-77443190 Msa0426810:CDS 30.0%
TCGTATAAGCAAATCAAAAC+AGG + chr3_2:77443381-77443400 None:intergenic 30.0%
!!! TGTTTTGATTTGCTTATACG+AGG - chr3_2:77443380-77443399 Msa0426810:intron 30.0%
TAATCACTTGTGAGATTGTT+TGG - chr3_2:77443416-77443435 Msa0426810:intron 30.0%
AGATTGTTTGGAAGAGTTTA+TGG - chr3_2:77443428-77443447 Msa0426810:intron 30.0%
CAAATTTATAGTTCAAGTCC+TGG - chr3_2:77443585-77443604 Msa0426810:intron 30.0%
AACCTCTTGTGTAAAAAAAC+AGG - chr3_2:77443612-77443631 Msa0426810:intron 30.0%
ACCTCTTGTGTAAAAAAACA+GGG - chr3_2:77443613-77443632 Msa0426810:intron 30.0%
TTGTGTAAAAAAACAGGGTA+AGG - chr3_2:77443618-77443637 Msa0426810:intron 30.0%
!! CTTTGAAGTTAGCATATCAT+AGG + chr3_2:77443895-77443914 None:intergenic 30.0%
! CCTTGTATTGCTCTTTTATT+TGG + chr3_2:77443930-77443949 None:intergenic 30.0%
CCAAATAAAAGAGCAATACA+AGG - chr3_2:77443927-77443946 Msa0426810:intron 30.0%
ATTTGGCTAAAAATGATCCA+TGG - chr3_2:77443961-77443980 Msa0426810:intron 30.0%
AAAAGAACAACAACTTGTGT+AGG + chr3_2:77444230-77444249 None:intergenic 30.0%
ATTTGCCAATCAATACTACA+TGG + chr3_2:77444357-77444376 None:intergenic 30.0%
GAATTTAGATTCAATGGAAG+AGG + chr3_2:77444450-77444469 None:intergenic 30.0%
TTCAACATTCAGAGCTTCTT+TGG - chr3_2:77441115-77441134 Msa0426810:three_prime_UTR 35.0%
!! CAAAAGTACTTTCAAAGCAG+AGG - chr3_2:77441141-77441160 Msa0426810:three_prime_UTR 35.0%
! AAAATCGGCATGCAGTTTTA+TGG - chr3_2:77441169-77441188 Msa0426810:three_prime_UTR 35.0%
TGTTGTACACTATCAGAAAG+TGG - chr3_2:77441227-77441246 Msa0426810:three_prime_UTR 35.0%
GTTGTACACTATCAGAAAGT+GGG - chr3_2:77441228-77441247 Msa0426810:three_prime_UTR 35.0%
! AGATTTAGATACCCTTTTGC+TGG + chr3_2:77441270-77441289 None:intergenic 35.0%
GATCGTGATGATACTCATAA+GGG + chr3_2:77441343-77441362 None:intergenic 35.0%
AGATCGTGATGATACTCATA+AGG + chr3_2:77441344-77441363 None:intergenic 35.0%
TTATGAGTATCATCACGATC+TGG - chr3_2:77441343-77441362 Msa0426810:three_prime_UTR 35.0%
TATGAGTATCATCACGATCT+GGG - chr3_2:77441344-77441363 Msa0426810:three_prime_UTR 35.0%
GCTACTGTTGCATTAGATTT+AGG - chr3_2:77441499-77441518 Msa0426810:CDS 35.0%
ACACAAACCAAATGCAATGA+AGG + chr3_2:77441575-77441594 None:intergenic 35.0%
CCTTCCGGTTTAAATCTAAA+AGG + chr3_2:77441631-77441650 None:intergenic 35.0%
! CCTTTTAGATTTAAACCGGA+AGG - chr3_2:77441628-77441647 Msa0426810:CDS 35.0%
! CAGCACAAAGTTTGCATTTT+AGG + chr3_2:77442183-77442202 None:intergenic 35.0%
TATCAGTGATGCCTAATTTC+AGG - chr3_2:77442338-77442357 Msa0426810:intron 35.0%
TTAAGGTGATCTACATCTTC+AGG + chr3_2:77442419-77442438 None:intergenic 35.0%
AGATGTAGATCACCTTAAGA+AGG - chr3_2:77442421-77442440 Msa0426810:CDS 35.0%
TCTAAACTTGCAACAGGATA+AGG - chr3_2:77442463-77442482 Msa0426810:CDS 35.0%
TGAAATGTTAGCTCAACAGT+AGG - chr3_2:77442646-77442665 Msa0426810:intron 35.0%
! CATCATTTGAAGTGCACTAA+GGG + chr3_2:77442736-77442755 None:intergenic 35.0%
! TCATCATTTGAAGTGCACTA+AGG + chr3_2:77442737-77442756 None:intergenic 35.0%
TTAGAATGGGCAATTTCTGA+GGG - chr3_2:77443095-77443114 Msa0426810:CDS 35.0%
AAATAAGCAATTGTCACTGC+TGG + chr3_2:77443167-77443186 None:intergenic 35.0%
TTGATTCAAAGACAAGGTGA+GGG + chr3_2:77443224-77443243 None:intergenic 35.0%
TTTGATTCAAAGACAAGGTG+AGG + chr3_2:77443225-77443244 None:intergenic 35.0%
TATTGTTGCACAAAACCTCT+TGG - chr3_2:77443287-77443306 Msa0426810:intron 35.0%
GAACTATCATTGAGAGCTTA+TGG + chr3_2:77443496-77443515 None:intergenic 35.0%
!!! ACCCTGTTTTTTTACACAAG+AGG + chr3_2:77443617-77443636 None:intergenic 35.0%
TTTGAATCCATGTCAGATTG+AGG + chr3_2:77443806-77443825 None:intergenic 35.0%
ACAAGGAGCAACTTATGATT+TGG - chr3_2:77443944-77443963 Msa0426810:intron 35.0%
!! TTTTGGGGATATAGCAGATT+GGG - chr3_2:77444016-77444035 Msa0426810:intron 35.0%
AGACTAATACCTAATTCGTC+AGG + chr3_2:77444084-77444103 None:intergenic 35.0%
ACACACAAAATCCAATATCC+TGG + chr3_2:77444123-77444142 None:intergenic 35.0%
ATGCTATACTTGTGATTGAC+AGG - chr3_2:77444186-77444205 Msa0426810:intron 35.0%
!! ACAAGTTGTTGTTCTTTTGC+AGG - chr3_2:77444232-77444251 Msa0426810:CDS 35.0%
!! TTGTTGTTCTTTTGCAGGAT+TGG - chr3_2:77444237-77444256 Msa0426810:CDS 35.0%
ATAGGTATATTGCCTGTAAC+TGG - chr3_2:77444320-77444339 Msa0426810:CDS 35.0%
GAATATTTGGTACCAGTTAC+AGG + chr3_2:77444335-77444354 None:intergenic 35.0%
AAGAGAATCCTACCAGCAAA+AGG - chr3_2:77441255-77441274 Msa0426810:three_prime_UTR 40.0%
AGAGAATCCTACCAGCAAAA+GGG - chr3_2:77441256-77441275 Msa0426810:three_prime_UTR 40.0%
! TTAGATACCCTTTTGCTGGT+AGG + chr3_2:77441266-77441285 None:intergenic 40.0%
GATCTCTACTGAAACTCCTT+CGG + chr3_2:77441663-77441682 None:intergenic 40.0%
TCAACCACTGAACATAACAG+GGG + chr3_2:77441874-77441893 None:intergenic 40.0%
CTCAACCACTGAACATAACA+GGG + chr3_2:77441875-77441894 None:intergenic 40.0%
TCTCAACCACTGAACATAAC+AGG + chr3_2:77441876-77441895 None:intergenic 40.0%
GATACTATTGGAATGGGAAG+TGG + chr3_2:77441907-77441926 None:intergenic 40.0%
CAGCTTATGACAAAAGCTGA+TGG - chr3_2:77442093-77442112 Msa0426810:intron 40.0%
! ATCTTCAGGTTTCTGTGGTT+GGG + chr3_2:77442405-77442424 None:intergenic 40.0%
! TCTACATCTTCAGGTTTCTG+TGG + chr3_2:77442410-77442429 None:intergenic 40.0%
GATCACCTTAAGAAGGAAGA+AGG - chr3_2:77442428-77442447 Msa0426810:CDS 40.0%
! AGGATAAGGATGCTGAGTTT+TGG - chr3_2:77442477-77442496 Msa0426810:CDS 40.0%
! GGATAAGGATGCTGAGTTTT+GGG - chr3_2:77442478-77442497 Msa0426810:CDS 40.0%
! GATAAGGATGCTGAGTTTTG+GGG - chr3_2:77442479-77442498 Msa0426810:CDS 40.0%
! CTAAAAAGGGGTTTGCTTAC+AGG + chr3_2:77442566-77442585 None:intergenic 40.0%
TCTCTGGCGTTGTAATTTCT+AGG - chr3_2:77442671-77442690 Msa0426810:intron 40.0%
CTCTGGCGTTGTAATTTCTA+GGG - chr3_2:77442672-77442691 Msa0426810:intron 40.0%
TCTAAGGATGACACTGCTTT+AGG + chr3_2:77443080-77443099 None:intergenic 40.0%
AAGCAGTGTCATCCTTAGAA+TGG - chr3_2:77443081-77443100 Msa0426810:CDS 40.0%
AGCAGTGTCATCCTTAGAAT+GGG - chr3_2:77443082-77443101 Msa0426810:CDS 40.0%
CTCAGAAATTGCCCATTCTA+AGG + chr3_2:77443096-77443115 None:intergenic 40.0%
CTTAGAATGGGCAATTTCTG+AGG - chr3_2:77443094-77443113 Msa0426810:CDS 40.0%
TTGCACAAAACCTCTTGGTT+TGG - chr3_2:77443292-77443311 Msa0426810:intron 40.0%
!! ACAAAACCTCTTGGTTTGGT+GGG - chr3_2:77443296-77443315 Msa0426810:intron 40.0%
TTTGGTGGGAACAACTAACA+AGG - chr3_2:77443310-77443329 Msa0426810:intron 40.0%
TTTCTACTCTTAGCAGCTCA+AGG + chr3_2:77443340-77443359 None:intergenic 40.0%
! TTACACAAGAGGTTGTTTCC+AGG + chr3_2:77443606-77443625 None:intergenic 40.0%
GCTACGTACAATACACCAAA+TGG - chr3_2:77443640-77443659 Msa0426810:intron 40.0%
ACGTACAATACACCAAATGG+TGG - chr3_2:77443643-77443662 Msa0426810:intron 40.0%
CGTACAATACACCAAATGGT+GGG - chr3_2:77443644-77443663 Msa0426810:intron 40.0%
CTAACTTCAAAGAGACCTTG+TGG - chr3_2:77443903-77443922 Msa0426810:intron 40.0%
!! GCTCTTTTATTTGGTCCACA+AGG + chr3_2:77443921-77443940 None:intergenic 40.0%
GGCTAAAAATGATCCATGGA+AGG - chr3_2:77443965-77443984 Msa0426810:intron 40.0%
!! CTTTTGGGGATATAGCAGAT+TGG - chr3_2:77444015-77444034 Msa0426810:intron 40.0%
CTATTGTGAAAATCAGCTCC+AGG - chr3_2:77444102-77444121 Msa0426810:intron 40.0%
GAAAATCAGCTCCAGGATAT+TGG - chr3_2:77444109-77444128 Msa0426810:intron 40.0%
!!! CTCTCAAGTTTTGAGCACTA+TGG + chr3_2:77444272-77444291 None:intergenic 40.0%
TTTAAACCGGAAGGGTGATG+TGG - chr3_2:77441637-77441656 Msa0426810:CDS 45.0%
TCTACCCCTGTTATGTTCAG+TGG - chr3_2:77441867-77441886 Msa0426810:intron 45.0%
! CATCTTCAGGTTTCTGTGGT+TGG + chr3_2:77442406-77442425 None:intergenic 45.0%
CCACACCTTCTTCCTTCTTA+AGG + chr3_2:77442436-77442455 None:intergenic 45.0%
CCTTAAGAAGGAAGAAGGTG+TGG - chr3_2:77442433-77442452 Msa0426810:CDS 45.0%
ACAGAATCCAAAACACGTCG+AGG - chr3_2:77442695-77442714 Msa0426810:intron 45.0%
CGTCGAGGACGATTGTAAAA+TGG - chr3_2:77442710-77442729 Msa0426810:intron 45.0%
AGTGCACTTCGCAAAGAGTT+TGG + chr3_2:77443056-77443075 None:intergenic 45.0%
! TGGGCAATTTCTGAGGGAAA+AGG - chr3_2:77443101-77443120 Msa0426810:CDS 45.0%
GTTTATGTGCACTGTACTGC+AGG - chr3_2:77443128-77443147 Msa0426810:CDS 45.0%
!! CACAAAACCTCTTGGTTTGG+TGG - chr3_2:77443295-77443314 Msa0426810:intron 45.0%
TGGTCTGGAAGACTCTCAAA+TGG + chr3_2:77443993-77444012 None:intergenic 45.0%
! AGTCTTCCAGACCATGCTTT+TGG - chr3_2:77443999-77444018 Msa0426810:intron 45.0%
! GTCTTCCAGACCATGCTTTT+GGG - chr3_2:77444000-77444019 Msa0426810:intron 45.0%
! TCTTCCAGACCATGCTTTTG+GGG - chr3_2:77444001-77444020 Msa0426810:intron 45.0%
! ATATCCCCAAAAGCATGGTC+TGG + chr3_2:77444008-77444027 None:intergenic 45.0%
CTGCTATATCCCCAAAAGCA+TGG + chr3_2:77444013-77444032 None:intergenic 45.0%
TTCGTGGAACCTGACGAATT+AGG - chr3_2:77444072-77444091 Msa0426810:intron 45.0%
GATTGACAGGTCAGTGCTTA+TGG - chr3_2:77444199-77444218 Msa0426810:intron 45.0%
!!! TATTTATTTTCATAAAAAAA+GGG + chr3_2:77443719-77443738 None:intergenic 5.0%
AGCTCAACAGTAGGAGTCTC+TGG - chr3_2:77442655-77442674 Msa0426810:intron 50.0%
! CAATCGTCCTCGACGTGTTT+TGG + chr3_2:77442705-77442724 None:intergenic 50.0%
GTTGTTCCCACCAAACCAAG+AGG + chr3_2:77443305-77443324 None:intergenic 50.0%
GTCAGATTGAGGCCCTGTAT+GGG + chr3_2:77443795-77443814 None:intergenic 50.0%
TGTCAGATTGAGGCCCTGTA+TGG + chr3_2:77443796-77443815 None:intergenic 50.0%
TACAGGGCCTCAATCTGACA+TGG - chr3_2:77443796-77443815 Msa0426810:intron 50.0%
CTCTCAAATGGCTCCTTCCA+TGG + chr3_2:77443981-77444000 None:intergenic 50.0%
GGGATATAGCAGATTGGGAG+AGG - chr3_2:77444021-77444040 Msa0426810:intron 50.0%
GTGCACTGTACTGCAGGACT+TGG - chr3_2:77443134-77443153 Msa0426810:CDS 55.0%
TAGGAAGGGGTCCCACCATT+TGG + chr3_2:77443658-77443677 None:intergenic 55.0%
ATACGCAGGGGTCTAGGAAG+GGG + chr3_2:77443671-77443690 None:intergenic 55.0%
CATACGCAGGGGTCTAGGAA+GGG + chr3_2:77443672-77443691 None:intergenic 55.0%
TTCCTAGACCCCTGCGTATG+CGG - chr3_2:77443672-77443691 Msa0426810:intron 55.0%
TAAAGCTCCCGCATACGCAG+GGG + chr3_2:77443683-77443702 None:intergenic 55.0%
CTAAAGCTCCCGCATACGCA+GGG + chr3_2:77443684-77443703 None:intergenic 55.0%
ACTAAAGCTCCCGCATACGC+AGG + chr3_2:77443685-77443704 None:intergenic 55.0%
! ATGCGGGAGCTTTAGTGCAC+TGG - chr3_2:77443689-77443708 Msa0426810:intron 55.0%
!!! CGCGGACACGGTTTTGAATC+AGG + chr3_2:77444049-77444068 None:intergenic 55.0%
CTTCGGCCACATCACCCTTC+CGG + chr3_2:77441646-77441665 None:intergenic 60.0%
GCATACGCAGGGGTCTAGGA+AGG + chr3_2:77443673-77443692 None:intergenic 60.0%
TCCTAGACCCCTGCGTATGC+GGG - chr3_2:77443673-77443692 Msa0426810:intron 60.0%
! TTCCACGAAGAGCGCGGACA+CGG + chr3_2:77444061-77444080 None:intergenic 60.0%
GTCAGGTTCCACGAAGAGCG+CGG + chr3_2:77444067-77444086 None:intergenic 60.0%
CGGAAGGGTGATGTGGCCGA+AGG - chr3_2:77441644-77441663 Msa0426810:CDS 65.0%
TCCCGCATACGCAGGGGTCT+AGG + chr3_2:77443677-77443696 None:intergenic 65.0%
AACCGTGTCCGCGCTCTTCG+TGG - chr3_2:77444056-77444075 Msa0426810:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 77441052 77444523 77441052 ID=Msa0426810;Name=Msa0426810
chr3_2 mRNA 77441052 77444523 77441052 ID=Msa0426810-mRNA-1;Parent=Msa0426810;Name=Msa0426810-mRNA-1;_AED=0.13;_eAED=0.13;_QI=34|1|1|1|0.75|0.6|5|324|286
chr3_2 exon 77441052 77441367 77441052 ID=Msa0426810-mRNA-1:exon:20192;Parent=Msa0426810-mRNA-1
chr3_2 exon 77441482 77441693 77441482 ID=Msa0426810-mRNA-1:exon:20191;Parent=Msa0426810-mRNA-1
chr3_2 exon 77442367 77442537 77442367 ID=Msa0426810-mRNA-1:exon:20190;Parent=Msa0426810-mRNA-1
chr3_2 exon 77443010 77443215 77443010 ID=Msa0426810-mRNA-1:exon:20189;Parent=Msa0426810-mRNA-1
chr3_2 exon 77444210 77444523 77444210 ID=Msa0426810-mRNA-1:exon:20188;Parent=Msa0426810-mRNA-1
chr3_2 five_prime_UTR 77444490 77444523 77444490 ID=Msa0426810-mRNA-1:five_prime_utr;Parent=Msa0426810-mRNA-1
chr3_2 CDS 77444210 77444489 77444210 ID=Msa0426810-mRNA-1:cds;Parent=Msa0426810-mRNA-1
chr3_2 CDS 77443010 77443215 77443010 ID=Msa0426810-mRNA-1:cds;Parent=Msa0426810-mRNA-1
chr3_2 CDS 77442367 77442537 77442367 ID=Msa0426810-mRNA-1:cds;Parent=Msa0426810-mRNA-1
chr3_2 CDS 77441490 77441693 77441490 ID=Msa0426810-mRNA-1:cds;Parent=Msa0426810-mRNA-1
chr3_2 three_prime_UTR 77441482 77441489 77441482 ID=Msa0426810-mRNA-1:three_prime_utr;Parent=Msa0426810-mRNA-1
chr3_2 three_prime_UTR 77441052 77441367 77441052 ID=Msa0426810-mRNA-1:three_prime_utr;Parent=Msa0426810-mRNA-1
Gene Sequence

>Msa0426810

ATGGAAAGTGTAAGTAACATTGGTTTCTCTTCAACATTCAGAGCTTCTTTGGACACAAAAGTACTTTCAAAGCAGAGGAAACAAAAATCGGCATGCAGTTTTATGGTTCCTATCAACTACTCTATTAGGATGAACAAAATTTGTTGTACACTATCAGAAAGTGGGATTGAAGAGAATCCTACCAGCAAAAGGGTATCTAAATCTAATGATTTGATGGAAGAATACAATATAGCTATGAAGAAGATGATGAGAAACCCTTATGAGTATCATCACGATCTGGGTATGAATTATACAGTTATAACTGACAATTTGATTGTGGGGTCCCAACCACAGAAACCTGAAGATGTAGATCACCTTAAGAAGGAAGAAGGTGTGGCATATATTCTAAACTTGCAACAGGATAAGGATGCTGAGTTTTGGGGAATAGACTTGCAGTCAATAGTAAAAAAGTGTCGCGAACTTGAAATTAGACACATGAGGAGACCTGCAGTAGACTTTGATCCAAACTCTTTGCGAAGTGCACTACCTAAAGCAGTGTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTGCACTGTACTGCAGGACTTGGAAGAGCTCCAGCAGTGACAATTGCTTATTTGTTCTGGTTTTGTGACATGAATCTAAATGAAGCCTATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAGAGCAATACAAGGAGCAACTTATGATTTGGCTAAAAATGATCCATGGAAGGAGCCATTTGAGAGTCTTCCAGACCATGCTTTTGGGGATATAGCAGATTGGGAGAGGAACCTGATTCAAAACCGTGTCCGCGCTCTTCGTGGAACCTGA

Protein sequence

>Msa0426810

MESVSNIGFSSTFRASLDTKVLSKQRKQKSACSFMVPINYSIRMNKICCTLSESGIEENPTSKRVSKSNDLMEEYNIAMKKMMRNPYEYHHDLGMNYTVITDNLIVGSQPQKPEDVDHLKKEEGVAYILNLQQDKDAEFWGIDLQSIVKKCRELEIRHMRRPAVDFDPNSLRSALPKAVSSLEWAISEGKGRVYVHCTAGLGRAPAVTIAYLFWFCDMNLNEAYDMLTSKRPCGPNKRAIQGATYDLAKNDPWKEPFESLPDHAFGDIADWERNLIQNRVRALRGT*