Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465830 | XP_024627347.2 | 96.565 | 262 | 6 | 1 | 12 | 273 | 56 | 314 | 2.76e-173 | 521 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465830 | sp|F4IM84|DEXH5_ARATH | 44.167 | 240 | 91 | 7 | 35 | 273 | 8 | 205 | 5.32e-48 | 174 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465830 | A0A072VR43 | 96.565 | 262 | 6 | 1 | 12 | 273 | 56 | 314 | 1.32e-173 | 521 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0136800 | Msa1465830 | 0.838664 | 2.514850e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465830 | MtrunA17_Chr1g0208961 | 96.565 | 262 | 6 | 1 | 12 | 273 | 56 | 314 | 2.54e-177 | 521 |
| Msa1465830 | MtrunA17_Chr8g0392581 | 52.532 | 158 | 75 | 0 | 116 | 273 | 101 | 258 | 4.36e-48 | 171 |
| Msa1465830 | MtrunA17_Chr8g0355291 | 40.500 | 200 | 94 | 4 | 85 | 273 | 49 | 234 | 1.54e-37 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1465830 | AT2G01130.1 | 44.167 | 240 | 91 | 7 | 35 | 273 | 8 | 205 | 5.41e-49 | 174 |
| Msa1465830 | AT2G01130.2 | 56.081 | 148 | 56 | 3 | 127 | 273 | 1 | 140 | 1.42e-40 | 150 |
| Msa1465830 | AT1G48650.1 | 47.531 | 162 | 80 | 1 | 111 | 272 | 127 | 283 | 3.00e-40 | 149 |
| Msa1465830 | AT1G48650.2 | 47.531 | 162 | 80 | 1 | 111 | 272 | 127 | 283 | 3.54e-40 | 149 |
| Msa1465830 | AT5G04895.1 | 42.236 | 161 | 81 | 2 | 117 | 273 | 93 | 245 | 2.73e-34 | 132 |
Find 86 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGATGAAATGAGAGGTTT+AGG | 0.249796 | tig0045599:-973 | Msa1465830:intergenic |
| TTTCTCCACAACAGACTTAC+TGG | 0.250673 | tig0045599:-2536 | Msa1465830:intergenic |
| TCCGAATTACAGATATGATT+TGG | 0.304280 | tig0045599:+2115 | Msa1465830:CDS |
| TTACTGGATGCTAGTGGTTC+AGG | 0.313607 | tig0045599:-2520 | Msa1465830:intergenic |
| TAGGTGGCGGTGGTTGATTT+TGG | 0.321890 | tig0045599:-1123 | Msa1465830:intergenic |
| TTGGCTGAGTTTGACGGAAA+TGG | 0.329951 | tig0045599:-1104 | Msa1465830:intergenic |
| GTAAGCAAGAGGTGATTTCT+AGG | 0.332143 | tig0045599:+1881 | Msa1465830:CDS |
| CAACAACCTTCGAATACTTA+TGG | 0.354503 | tig0045599:-2073 | Msa1465830:intergenic |
| TTTGCATTGTTGTTGGATAA+GGG | 0.358184 | tig0045599:-1160 | Msa1465830:intergenic |
| ATTTGCATTGTTGTTGGATA+AGG | 0.358840 | tig0045599:-1161 | Msa1465830:intergenic |
| TCCAAATCATATCTGTAATT+CGG | 0.376353 | tig0045599:-2116 | Msa1465830:intergenic |
| GCGAGAATTTGCATTGTTGT+TGG | 0.385626 | tig0045599:-1167 | Msa1465830:intergenic |
| CAGCGAAGGGCGGTCCTTCA+TGG | 0.385627 | tig0045599:-999 | Msa1465830:intergenic |
| ATGATGAAATGAGAGGTTTA+GGG | 0.388661 | tig0045599:-972 | Msa1465830:intergenic |
| TGGAGAGTGGTAGGTGGCGG+TGG | 0.392491 | tig0045599:-1133 | Msa1465830:intergenic |
| CAATGCAAGGTTCGGTAAAA+CGG | 0.397118 | tig0045599:-903 | Msa1465830:intergenic |
| TGGCTGAGTTTGACGGAAAT+GGG | 0.409880 | tig0045599:-1103 | Msa1465830:intergenic |
| GAAGGTTGTTGTCTTTAGTA+AGG | 0.423332 | tig0045599:+2085 | Msa1465830:CDS |
| GTTTGGAGAGTGGTAGGTGG+CGG | 0.427082 | tig0045599:-1136 | Msa1465830:intergenic |
| TGCATTGTTGTTGGATAAGG+GGG | 0.441221 | tig0045599:-1158 | Msa1465830:intergenic |
| ATTGGAGCAATCCTCGGAAA+TGG | 0.446317 | tig0045599:-1212 | Msa1465830:intergenic |
| TCGGTAAAACGGCGTCGTGC+TGG | 0.456826 | tig0045599:-892 | Msa1465830:intergenic |
| TGCACCAACCCGCTTGAATA+CGG | 0.457905 | tig0045599:-2380 | Msa1465830:intergenic |
| CAACTAGAATGGGACTGTAT+AGG | 0.464743 | tig0045599:+1947 | Msa1465830:CDS |
| GGGGTTTGGAGAGTGGTAGG+TGG | 0.468957 | tig0045599:-1139 | Msa1465830:intergenic |
| GGCAGTCTTGGTACAGATGA+AGG | 0.469058 | tig0045599:+2484 | Msa1465830:CDS |
| CGCCCTTCGCTGTCCTCCCA+TGG | 0.471220 | tig0045599:+1010 | Msa1465830:CDS |
| AGGAACGTGAAGTTGATGAT+TGG | 0.484041 | tig0045599:-1230 | Msa1465830:intergenic |
| AGTTTGACGGAAATGGGAGC+GGG | 0.484538 | tig0045599:-1097 | Msa1465830:intergenic |
| ATTCATTCATGTTCTCATTG+AGG | 0.486248 | tig0045599:-1822 | Msa1465830:intergenic |
| TCAAGCAGTGATGGCAGTCT+TGG | 0.491979 | tig0045599:+2472 | Msa1465830:CDS |
| GAGTTTGACGGAAATGGGAG+CGG | 0.493357 | tig0045599:-1098 | Msa1465830:intergenic |
| TCAATGAGAACATGAATGAA+TGG | 0.499349 | tig0045599:+1824 | Msa1465830:CDS |
| GCATTTGTAAGCTTATCTGC+CGG | 0.501770 | tig0045599:-2564 | Msa1465830:intergenic |
| TTGGGAAATGGTGATGATGA+TGG | 0.503619 | tig0045599:-944 | Msa1465830:intergenic |
| AATACCTTAGCCAAAAGTCC+AGG | 0.511826 | tig0045599:+2413 | Msa1465830:CDS |
| ATGCAATGCAATGCAAGGTT+CGG | 0.512399 | tig0045599:-911 | Msa1465830:intergenic |
| CGCCATGGGAGGACAGCGAA+GGG | 0.520336 | tig0045599:-1012 | Msa1465830:intergenic |
| AGAACATGAATGAATGGAAG+AGG | 0.521095 | tig0045599:+1830 | Msa1465830:CDS |
| TGATCAACAACAAGCCTGGC+AGG | 0.525736 | tig0045599:+2588 | Msa1465830:CDS |
| TGCGTGATCAACAACAAGCC+TGG | 0.534615 | tig0045599:+2584 | Msa1465830:CDS |
| ATAAGTCAAAATAACCTGCC+AGG | 0.535224 | tig0045599:-2602 | Msa1465830:intergenic |
| CGATATAACAATGCAGAACA+AGG | 0.536860 | tig0045599:-2649 | Msa1465830:intergenic |
| ATTTCATCATCTCGCCATGA+AGG | 0.540138 | tig0045599:+985 | Msa1465830:CDS |
| TAAGCAAGAGGTGATTTCTA+GGG | 0.547522 | tig0045599:+1882 | Msa1465830:CDS |
| TTGCATTGTTGTTGGATAAG+GGG | 0.549617 | tig0045599:-1159 | Msa1465830:intergenic |
| AATGGTGATGATGATGGAGT+TGG | 0.552564 | tig0045599:-938 | Msa1465830:intergenic |
| CATTTGTAAGCTTATCTGCC+GGG | 0.555167 | tig0045599:-2563 | Msa1465830:intergenic |
| GCCTCTCACCGTATTCAAGC+GGG | 0.557077 | tig0045599:+2372 | Msa1465830:CDS |
| TCATATCTGTAATTCGGAAG+TGG | 0.560496 | tig0045599:-2110 | Msa1465830:intergenic |
| ACTTCACGTTCCTTCCCTAC+CGG | 0.560609 | tig0045599:+1240 | Msa1465830:CDS |
| TTTGCAAGATCAAGCAGTGA+TGG | 0.561713 | tig0045599:+2463 | Msa1465830:CDS |
| GCGCCATGGGAGGACAGCGA+AGG | 0.562050 | tig0045599:-1013 | Msa1465830:intergenic |
| TTTAAATGAAGTTACCGGTA+GGG | 0.567148 | tig0045599:-1254 | Msa1465830:intergenic |
| AGGTAACGACGGAGCGGAGA+CGG | 0.570624 | tig0045599:-1057 | Msa1465830:intergenic |
| AGGAACGTAGATGGCGCCAT+GGG | 0.573825 | tig0045599:-1026 | Msa1465830:intergenic |
| AGCATCCAGTAAGTCTGTTG+TGG | 0.574492 | tig0045599:+2531 | Msa1465830:CDS |
| AATGAAGTTACCGGTAGGGA+AGG | 0.576255 | tig0045599:-1250 | Msa1465830:intergenic |
| GAATGATAAGAGTAAGCAAG+AGG | 0.578822 | tig0045599:+1870 | Msa1465830:CDS |
| GAGCGGAGACGGTGGTGAGG+AGG | 0.581688 | tig0045599:-1046 | Msa1465830:intergenic |
| CGAAAGACGGCCTCAGAGAG+AGG | 0.581724 | tig0045599:+2139 | Msa1465830:CDS |
| TGGCAGCCATAAGTATTCGA+AGG | 0.582788 | tig0045599:+2067 | Msa1465830:intron |
| GATATGATTTGGACGAAAGA+CGG | 0.583487 | tig0045599:+2126 | Msa1465830:CDS |
| TTGATGATTGGAGCAATCCT+CGG | 0.587443 | tig0045599:-1218 | Msa1465830:intergenic |
| GTGGTGAGGAGGAACGTAGA+TGG | 0.589128 | tig0045599:-1035 | Msa1465830:intergenic |
| CTGTTGTGGAGAAAATTGCC+CGG | 0.593445 | tig0045599:+2545 | Msa1465830:CDS |
| AACGTAGATGGCGCCATGGG+AGG | 0.598039 | tig0045599:-1023 | Msa1465830:intergenic |
| GAGGAACGTAGATGGCGCCA+TGG | 0.598697 | tig0045599:-1027 | Msa1465830:intergenic |
| GCAGTCTTGGTACAGATGAA+GGG | 0.604863 | tig0045599:+2485 | Msa1465830:CDS |
| GTTTGACGGAAATGGGAGCG+GGG | 0.610236 | tig0045599:-1096 | Msa1465830:intergenic |
| TGCCTCTCACCGTATTCAAG+CGG | 0.620064 | tig0045599:+2371 | Msa1465830:CDS |
| ACGGAGCGGAGACGGTGGTG+AGG | 0.621277 | tig0045599:-1049 | Msa1465830:intergenic |
| TGGCGAGATGATGAAATGAG+AGG | 0.626093 | tig0045599:-979 | Msa1465830:intergenic |
| GAAGCATGCAATGCAATGCA+AGG | 0.630140 | tig0045599:-916 | Msa1465830:intergenic |
| GTATCTGTGTGTCAGTGTGA+CGG | 0.634018 | tig0045599:-835 | Msa1465830:intergenic |
| ACCCGCTTGAATACGGTGAG+AGG | 0.634900 | tig0045599:-2373 | Msa1465830:intergenic |
| ATACCTTAGCCAAAAGTCCA+GGG | 0.641918 | tig0045599:+2414 | Msa1465830:CDS |
| CTCACCGTATTCAAGCGGGT+TGG | 0.642411 | tig0045599:+2376 | Msa1465830:CDS |
| CATGGGAGGACAGCGAAGGG+CGG | 0.644713 | tig0045599:-1009 | Msa1465830:intergenic |
| TTACGACGATGCCATTTCCG+AGG | 0.647450 | tig0045599:+1201 | Msa1465830:CDS |
| AGCGGCGGCGGAGGTAACGA+CGG | 0.650245 | tig0045599:-1068 | Msa1465820:intergenic |
| TTTGACGGAAATGGGAGCGG+GGG | 0.653466 | tig0045599:-1095 | Msa1465820:intergenic |
| TAACGACGGAGCGGAGACGG+TGG | 0.663720 | tig0045599:-1054 | Msa1465820:intergenic |
| CGGCGGAGGTAACGACGGAG+CGG | 0.665360 | tig0045599:-1063 | Msa1465820:intergenic |
| ATGACATATACCTCTCTCTG+AGG | 0.684269 | tig0045599:-2149 | Msa1465820:intergenic |
| ACAGACTTACTGGATGCTAG+TGG | 0.684761 | tig0045599:-2526 | Msa1465820:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATAAAATTAAGTGT+CGG | + | tig0045599:1567-1586 | Msa1465830:intron | 10.0% |
| !! | ATATATATAAAATTAAGTGT+CGG | + | tig0045599:1567-1586 | Msa1465830:intron | 10.0% |
| !! | CATGTAAATATTTGAAAAAA+TGG | + | tig0045599:1621-1640 | Msa1465830:intron | 15.0% |
| !!! | TATCTAAAATCATAGAAAAT+GGG | - | tig0045599:2199-2218 | Msa1465830:intergenic | 15.0% |
| !! | CATGTAAATATTTGAAAAAA+TGG | + | tig0045599:1621-1640 | Msa1465830:intron | 15.0% |
| !!! | TATCTAAAATCATAGAAAAT+GGG | - | tig0045599:2199-2218 | Msa1465830:intergenic | 15.0% |
| !! | AGAAATTTAAATGAAGTTAC+CGG | - | tig0045599:1262-1281 | Msa1465830:intergenic | 20.0% |
| !! | AAAGATAAATAAACATACGA+AGG | - | tig0045599:1285-1304 | Msa1465830:intergenic | 20.0% |
| !! | ATTATTTACACATGAATAGA+AGG | - | tig0045599:1542-1561 | Msa1465830:intergenic | 20.0% |
| !!! | AAACAATACTTTTGATTCAA+AGG | - | tig0045599:2007-2026 | Msa1465830:intergenic | 20.0% |
| !!! | TTTGAATCAAAAGTATTGTT+TGG | + | tig0045599:2006-2025 | Msa1465830:intron | 20.0% |
| !!! | GTATCTAAAATCATAGAAAA+TGG | - | tig0045599:2200-2219 | Msa1465830:intergenic | 20.0% |
| !!! | AATAACTAATAGCTTTACTA+AGG | - | tig0045599:2339-2358 | Msa1465830:intergenic | 20.0% |
| !! | TAAAGCTATTAGTTATTGAT+AGG | + | tig0045599:2342-2361 | Msa1465830:intron | 20.0% |
| !! | AGAAATTTAAATGAAGTTAC+CGG | - | tig0045599:1262-1281 | Msa1465830:intergenic | 20.0% |
| !! | AAAGATAAATAAACATACGA+AGG | - | tig0045599:1285-1304 | Msa1465830:intergenic | 20.0% |
| !! | ATTATTTACACATGAATAGA+AGG | - | tig0045599:1542-1561 | Msa1465830:intergenic | 20.0% |
| !!! | AAACAATACTTTTGATTCAA+AGG | - | tig0045599:2007-2026 | Msa1465830:intergenic | 20.0% |
| !!! | TTTGAATCAAAAGTATTGTT+TGG | + | tig0045599:2006-2025 | Msa1465830:intron | 20.0% |
| !!! | GTATCTAAAATCATAGAAAA+TGG | - | tig0045599:2200-2219 | Msa1465830:intergenic | 20.0% |
| !!! | AATAACTAATAGCTTTACTA+AGG | - | tig0045599:2339-2358 | Msa1465830:intergenic | 20.0% |
| !! | TAAAGCTATTAGTTATTGAT+AGG | + | tig0045599:2342-2361 | Msa1465830:intron | 20.0% |
| !!! | TTTATGTGTTGTTTTTTGCT+TGG | + | tig0045599:1771-1790 | Msa1465830:intron | 25.0% |
| !!! | TGATTTTTTGTTTTGTAGAG+TGG | + | tig0045599:1796-1815 | Msa1465830:intron | 25.0% |
| !!! | ATCAAAAGTATTGTTTGGTT+TGG | + | tig0045599:2011-2030 | Msa1465830:intron | 25.0% |
| ! | AATTTGATTCTGCTTGTTTA+TGG | + | tig0045599:2047-2066 | Msa1465830:intron | 25.0% |
| ! | TCCAAATCATATCTGTAATT+CGG | - | tig0045599:2119-2138 | Msa1465830:intergenic | 25.0% |
| !!! | TTTATGTGTTGTTTTTTGCT+TGG | + | tig0045599:1771-1790 | Msa1465830:intron | 25.0% |
| !!! | TGATTTTTTGTTTTGTAGAG+TGG | + | tig0045599:1796-1815 | Msa1465830:intron | 25.0% |
| !!! | ATCAAAAGTATTGTTTGGTT+TGG | + | tig0045599:2011-2030 | Msa1465830:intron | 25.0% |
| ! | AATTTGATTCTGCTTGTTTA+TGG | + | tig0045599:2047-2066 | Msa1465830:intron | 25.0% |
| ! | TCCAAATCATATCTGTAATT+CGG | - | tig0045599:2119-2138 | Msa1465830:intergenic | 25.0% |
| !!! | TTTAGGGTTTTTTTGGGAAA+TGG | - | tig0045599:959-978 | None:intergenic | 30.0% |
| ATGATGAAATGAGAGGTTTA+GGG | - | tig0045599:975-994 | None:intergenic | 30.0% | |
| ! | TTTGCATTGTTGTTGGATAA+GGG | - | tig0045599:1163-1182 | Msa1465830:intergenic | 30.0% |
| ! | ATTTGCATTGTTGTTGGATA+AGG | - | tig0045599:1164-1183 | Msa1465830:intergenic | 30.0% |
| TTTAAATGAAGTTACCGGTA+GGG | - | tig0045599:1257-1276 | Msa1465830:intergenic | 30.0% | |
| ATTTAAATGAAGTTACCGGT+AGG | - | tig0045599:1258-1277 | Msa1465830:intergenic | 30.0% | |
| TCATCTCTTCAACTTATTAC+GGG | - | tig0045599:1386-1405 | Msa1465830:intergenic | 30.0% | |
| GTCATCTCTTCAACTTATTA+CGG | - | tig0045599:1387-1406 | Msa1465830:intergenic | 30.0% | |
| ATTCATTCATGTTCTCATTG+AGG | - | tig0045599:1825-1844 | Msa1465830:intergenic | 30.0% | |
| TCAATGAGAACATGAATGAA+TGG | + | tig0045599:1824-1843 | Msa1465830:CDS | 30.0% | |
| ! | TTTCTAGGGAGAAAAAAGAT+AGG | + | tig0045599:1896-1915 | Msa1465830:CDS | 30.0% |
| !! | TTTTGATGACATTGCAGTTT+TGG | + | tig0045599:1924-1943 | Msa1465830:CDS | 30.0% |
| TCCGAATTACAGATATGATT+TGG | + | tig0045599:2115-2134 | Msa1465830:CDS | 30.0% | |
| ATAGAAAATGGGATAGTAGA+TGG | - | tig0045599:2188-2207 | Msa1465830:intergenic | 30.0% | |
| TAGATACTATACAAAAGCTC+AGG | + | tig0045599:2213-2232 | Msa1465830:intron | 30.0% | |
| AGATACTATACAAAAGCTCA+GGG | + | tig0045599:2214-2233 | Msa1465830:intron | 30.0% | |
| AAGCAGAAGAATAGTAGAAA+GGG | - | tig0045599:2269-2288 | Msa1465830:intergenic | 30.0% | |
| !!! | TTTAGGGTTTTTTTGGGAAA+TGG | - | tig0045599:959-978 | Msa1465830:intergenic | 30.0% |
| ATGATGAAATGAGAGGTTTA+GGG | - | tig0045599:975-994 | Msa1465830:intergenic | 30.0% | |
| ! | TTTGCATTGTTGTTGGATAA+GGG | - | tig0045599:1163-1182 | Msa1465830:intergenic | 30.0% |
| ! | ATTTGCATTGTTGTTGGATA+AGG | - | tig0045599:1164-1183 | Msa1465830:intergenic | 30.0% |
| TTTAAATGAAGTTACCGGTA+GGG | - | tig0045599:1257-1276 | Msa1465830:intergenic | 30.0% | |
| ATTTAAATGAAGTTACCGGT+AGG | - | tig0045599:1258-1277 | Msa1465830:intergenic | 30.0% | |
| TCATCTCTTCAACTTATTAC+GGG | - | tig0045599:1386-1405 | Msa1465830:intergenic | 30.0% | |
| GTCATCTCTTCAACTTATTA+CGG | - | tig0045599:1387-1406 | Msa1465830:intergenic | 30.0% | |
| ATTCATTCATGTTCTCATTG+AGG | - | tig0045599:1825-1844 | Msa1465830:intergenic | 30.0% | |
| TCAATGAGAACATGAATGAA+TGG | + | tig0045599:1824-1843 | Msa1465830:CDS | 30.0% | |
| ! | TTTCTAGGGAGAAAAAAGAT+AGG | + | tig0045599:1896-1915 | Msa1465830:CDS | 30.0% |
| !! | TTTTGATGACATTGCAGTTT+TGG | + | tig0045599:1924-1943 | Msa1465830:CDS | 30.0% |
| TCCGAATTACAGATATGATT+TGG | + | tig0045599:2115-2134 | Msa1465830:CDS | 30.0% | |
| ATAGAAAATGGGATAGTAGA+TGG | - | tig0045599:2188-2207 | Msa1465830:intergenic | 30.0% | |
| TAGATACTATACAAAAGCTC+AGG | + | tig0045599:2213-2232 | Msa1465830:intron | 30.0% | |
| AGATACTATACAAAAGCTCA+GGG | + | tig0045599:2214-2233 | Msa1465830:intron | 30.0% | |
| AAGCAGAAGAATAGTAGAAA+GGG | - | tig0045599:2269-2288 | Msa1465830:intergenic | 30.0% | |
| !!! | GAGAGGTTTAGGGTTTTTTT+GGG | - | tig0045599:965-984 | None:intergenic | 35.0% |
| !!! | TGAGAGGTTTAGGGTTTTTT+TGG | - | tig0045599:966-985 | None:intergenic | 35.0% |
| GATGATGAAATGAGAGGTTT+AGG | - | tig0045599:976-995 | None:intergenic | 35.0% | |
| !!! | TTGATTTTGGCTGAGTTTGA+CGG | - | tig0045599:1113-1132 | Msa1465830:intergenic | 35.0% |
| ! | TTGCATTGTTGTTGGATAAG+GGG | - | tig0045599:1162-1181 | Msa1465830:intergenic | 35.0% |
| ATATGTGTAAGTGTAGTCTC+AGG | - | tig0045599:1358-1377 | Msa1465830:intergenic | 35.0% | |
| TAACGACATGTATCTTGTGA+CGG | + | tig0045599:1428-1447 | Msa1465830:intron | 35.0% | |
| ! | ATACCTTCTATCAGAAGTGT+CGG | + | tig0045599:1684-1703 | Msa1465830:intron | 35.0% |
| TGTAATTCAAAGTGTAACCG+TGG | + | tig0045599:1709-1728 | Msa1465830:intron | 35.0% | |
| GTAATTCAAAGTGTAACCGT+GGG | + | tig0045599:1710-1729 | Msa1465830:intron | 35.0% | |
| CACTACTATACAAAAACCCA+CGG | - | tig0045599:1729-1748 | Msa1465830:intergenic | 35.0% | |
| AGAACATGAATGAATGGAAG+AGG | + | tig0045599:1830-1849 | Msa1465830:CDS | 35.0% | |
| GAATGATAAGAGTAAGCAAG+AGG | + | tig0045599:1870-1889 | Msa1465830:CDS | 35.0% | |
| TAAGCAAGAGGTGATTTCTA+GGG | + | tig0045599:1882-1901 | Msa1465830:CDS | 35.0% | |
| CAACAACCTTCGAATACTTA+TGG | - | tig0045599:2076-2095 | Msa1465830:intergenic | 35.0% | |
| GAAGGTTGTTGTCTTTAGTA+AGG | + | tig0045599:2085-2104 | Msa1465830:CDS | 35.0% | |
| TCATATCTGTAATTCGGAAG+TGG | - | tig0045599:2113-2132 | Msa1465830:intergenic | 35.0% | |
| ! | GATATGATTTGGACGAAAGA+CGG | + | tig0045599:2126-2145 | Msa1465830:CDS | 35.0% |
| AGCAGAAGAATAGTAGAAAG+GGG | - | tig0045599:2268-2287 | Msa1465830:intergenic | 35.0% | |
| CAAGCAGAAGAATAGTAGAA+AGG | - | tig0045599:2270-2289 | Msa1465830:intergenic | 35.0% | |
| ! | TTTTCTTTACCCTGGACTTT+TGG | - | tig0045599:2426-2445 | Msa1465830:intergenic | 35.0% |
| ! | TGAAAAGCTTTTCTTTACCC+TGG | - | tig0045599:2434-2453 | Msa1465830:intergenic | 35.0% |
| ATAAGTCAAAATAACCTGCC+AGG | - | tig0045599:2605-2624 | Msa1465830:intergenic | 35.0% | |
| !!! | GAGAGGTTTAGGGTTTTTTT+GGG | - | tig0045599:965-984 | Msa1465830:intergenic | 35.0% |
| !!! | TGAGAGGTTTAGGGTTTTTT+TGG | - | tig0045599:966-985 | Msa1465830:intergenic | 35.0% |
| GATGATGAAATGAGAGGTTT+AGG | - | tig0045599:976-995 | Msa1465830:intergenic | 35.0% | |
| !!! | TTGATTTTGGCTGAGTTTGA+CGG | - | tig0045599:1113-1132 | Msa1465830:intergenic | 35.0% |
| ! | TTGCATTGTTGTTGGATAAG+GGG | - | tig0045599:1162-1181 | Msa1465830:intergenic | 35.0% |
| ATATGTGTAAGTGTAGTCTC+AGG | - | tig0045599:1358-1377 | Msa1465830:intergenic | 35.0% | |
| TAACGACATGTATCTTGTGA+CGG | + | tig0045599:1428-1447 | Msa1465830:intron | 35.0% | |
| ! | ATACCTTCTATCAGAAGTGT+CGG | + | tig0045599:1684-1703 | Msa1465830:intron | 35.0% |
| TGTAATTCAAAGTGTAACCG+TGG | + | tig0045599:1709-1728 | Msa1465830:intron | 35.0% | |
| GTAATTCAAAGTGTAACCGT+GGG | + | tig0045599:1710-1729 | Msa1465830:intron | 35.0% | |
| CACTACTATACAAAAACCCA+CGG | - | tig0045599:1729-1748 | Msa1465830:intergenic | 35.0% | |
| AGAACATGAATGAATGGAAG+AGG | + | tig0045599:1830-1849 | Msa1465830:CDS | 35.0% | |
| GAATGATAAGAGTAAGCAAG+AGG | + | tig0045599:1870-1889 | Msa1465830:CDS | 35.0% | |
| TAAGCAAGAGGTGATTTCTA+GGG | + | tig0045599:1882-1901 | Msa1465830:CDS | 35.0% | |
| CAACAACCTTCGAATACTTA+TGG | - | tig0045599:2076-2095 | Msa1465830:intergenic | 35.0% | |
| GAAGGTTGTTGTCTTTAGTA+AGG | + | tig0045599:2085-2104 | Msa1465830:CDS | 35.0% | |
| TCATATCTGTAATTCGGAAG+TGG | - | tig0045599:2113-2132 | Msa1465830:intergenic | 35.0% | |
| ! | GATATGATTTGGACGAAAGA+CGG | + | tig0045599:2126-2145 | Msa1465830:CDS | 35.0% |
| AGCAGAAGAATAGTAGAAAG+GGG | - | tig0045599:2268-2287 | Msa1465830:intergenic | 35.0% | |
| CAAGCAGAAGAATAGTAGAA+AGG | - | tig0045599:2270-2289 | Msa1465830:intergenic | 35.0% | |
| ! | TTTTCTTTACCCTGGACTTT+TGG | - | tig0045599:2426-2445 | Msa1465830:intergenic | 35.0% |
| ! | TGAAAAGCTTTTCTTTACCC+TGG | - | tig0045599:2434-2453 | Msa1465830:intergenic | 35.0% |
| ATAAGTCAAAATAACCTGCC+AGG | - | tig0045599:2605-2624 | Msa1465830:intergenic | 35.0% | |
| ! | CAATGCAAGGTTCGGTAAAA+CGG | - | tig0045599:906-925 | None:intergenic | 40.0% |
| ATGCAATGCAATGCAAGGTT+CGG | - | tig0045599:914-933 | None:intergenic | 40.0% | |
| !! | AATGGTGATGATGATGGAGT+TGG | - | tig0045599:941-960 | None:intergenic | 40.0% |
| ! | TTGGGAAATGGTGATGATGA+TGG | - | tig0045599:947-966 | None:intergenic | 40.0% |
| ATTTCATCATCTCGCCATGA+AGG | + | tig0045599:985-1004 | Msa1465830:CDS | 40.0% | |
| ! | TGCATTGTTGTTGGATAAGG+GGG | - | tig0045599:1161-1180 | Msa1465830:intergenic | 40.0% |
| GCGAGAATTTGCATTGTTGT+TGG | - | tig0045599:1170-1189 | Msa1465830:intergenic | 40.0% | |
| ! | TTGATGATTGGAGCAATCCT+CGG | - | tig0045599:1221-1240 | Msa1465830:intergenic | 40.0% |
| !! | AGGAACGTGAAGTTGATGAT+TGG | - | tig0045599:1233-1252 | Msa1465830:intergenic | 40.0% |
| !! | CTACTTAGTACTGATACCTC+TGG | - | tig0045599:1487-1506 | Msa1465830:intergenic | 40.0% |
| ! | CGTGGGTTTTTGTATAGTAG+TGG | + | tig0045599:1727-1746 | Msa1465830:intron | 40.0% |
| GTAAGCAAGAGGTGATTTCT+AGG | + | tig0045599:1881-1900 | Msa1465830:CDS | 40.0% | |
| !! | TGCAGTTTTGGCAACTAGAA+TGG | + | tig0045599:1936-1955 | Msa1465830:CDS | 40.0% |
| !! | GCAGTTTTGGCAACTAGAAT+GGG | + | tig0045599:1937-1956 | Msa1465830:CDS | 40.0% |
| CAACTAGAATGGGACTGTAT+AGG | + | tig0045599:1947-1966 | Msa1465830:CDS | 40.0% | |
| ATGACATATACCTCTCTCTG+AGG | - | tig0045599:2152-2171 | Msa1465830:intergenic | 40.0% | |
| CAGAAGAATAGTAGAAAGGG+GGG | - | tig0045599:2266-2285 | Msa1465830:intergenic | 40.0% | |
| GCAGAAGAATAGTAGAAAGG+GGG | - | tig0045599:2267-2286 | Msa1465830:intergenic | 40.0% | |
| AATACCTTAGCCAAAAGTCC+AGG | + | tig0045599:2413-2432 | Msa1465830:CDS | 40.0% | |
| ATACCTTAGCCAAAAGTCCA+GGG | + | tig0045599:2414-2433 | Msa1465830:CDS | 40.0% | |
| TTTGCAAGATCAAGCAGTGA+TGG | + | tig0045599:2463-2482 | Msa1465830:CDS | 40.0% | |
| TTTCTCCACAACAGACTTAC+TGG | - | tig0045599:2539-2558 | Msa1465830:intergenic | 40.0% | |
| CATTTGTAAGCTTATCTGCC+GGG | - | tig0045599:2566-2585 | Msa1465830:intergenic | 40.0% | |
| GCATTTGTAAGCTTATCTGC+CGG | - | tig0045599:2567-2586 | Msa1465830:intergenic | 40.0% | |
| ! | CAATGCAAGGTTCGGTAAAA+CGG | - | tig0045599:906-925 | Msa1465830:intergenic | 40.0% |
| ATGCAATGCAATGCAAGGTT+CGG | - | tig0045599:914-933 | Msa1465830:intergenic | 40.0% | |
| !! | AATGGTGATGATGATGGAGT+TGG | - | tig0045599:941-960 | Msa1465830:intergenic | 40.0% |
| ! | TTGGGAAATGGTGATGATGA+TGG | - | tig0045599:947-966 | Msa1465830:intergenic | 40.0% |
| ATTTCATCATCTCGCCATGA+AGG | + | tig0045599:985-1004 | Msa1465830:CDS | 40.0% | |
| ! | TGCATTGTTGTTGGATAAGG+GGG | - | tig0045599:1161-1180 | Msa1465830:intergenic | 40.0% |
| GCGAGAATTTGCATTGTTGT+TGG | - | tig0045599:1170-1189 | Msa1465830:intergenic | 40.0% | |
| ! | TTGATGATTGGAGCAATCCT+CGG | - | tig0045599:1221-1240 | Msa1465830:intergenic | 40.0% |
| !! | AGGAACGTGAAGTTGATGAT+TGG | - | tig0045599:1233-1252 | Msa1465830:intergenic | 40.0% |
| !! | CTACTTAGTACTGATACCTC+TGG | - | tig0045599:1487-1506 | Msa1465830:intergenic | 40.0% |
| ! | CGTGGGTTTTTGTATAGTAG+TGG | + | tig0045599:1727-1746 | Msa1465830:intron | 40.0% |
| GTAAGCAAGAGGTGATTTCT+AGG | + | tig0045599:1881-1900 | Msa1465830:CDS | 40.0% | |
| !! | TGCAGTTTTGGCAACTAGAA+TGG | + | tig0045599:1936-1955 | Msa1465830:CDS | 40.0% |
| !! | GCAGTTTTGGCAACTAGAAT+GGG | + | tig0045599:1937-1956 | Msa1465830:CDS | 40.0% |
| CAACTAGAATGGGACTGTAT+AGG | + | tig0045599:1947-1966 | Msa1465830:CDS | 40.0% | |
| ATGACATATACCTCTCTCTG+AGG | - | tig0045599:2152-2171 | Msa1465830:intergenic | 40.0% | |
| CAGAAGAATAGTAGAAAGGG+GGG | - | tig0045599:2266-2285 | Msa1465830:intergenic | 40.0% | |
| GCAGAAGAATAGTAGAAAGG+GGG | - | tig0045599:2267-2286 | Msa1465830:intergenic | 40.0% | |
| AATACCTTAGCCAAAAGTCC+AGG | + | tig0045599:2413-2432 | Msa1465830:CDS | 40.0% | |
| ATACCTTAGCCAAAAGTCCA+GGG | + | tig0045599:2414-2433 | Msa1465830:CDS | 40.0% | |
| TTTGCAAGATCAAGCAGTGA+TGG | + | tig0045599:2463-2482 | Msa1465830:CDS | 40.0% | |
| TTTCTCCACAACAGACTTAC+TGG | - | tig0045599:2539-2558 | Msa1465830:intergenic | 40.0% | |
| CATTTGTAAGCTTATCTGCC+GGG | - | tig0045599:2566-2585 | Msa1465830:intergenic | 40.0% | |
| GCATTTGTAAGCTTATCTGC+CGG | - | tig0045599:2567-2586 | Msa1465830:intergenic | 40.0% | |
| GAAGCATGCAATGCAATGCA+AGG | - | tig0045599:919-938 | None:intergenic | 45.0% | |
| TGGCGAGATGATGAAATGAG+AGG | - | tig0045599:982-1001 | None:intergenic | 45.0% | |
| TGGCTGAGTTTGACGGAAAT+GGG | - | tig0045599:1106-1125 | Msa1465830:intergenic | 45.0% | |
| TTGGCTGAGTTTGACGGAAA+TGG | - | tig0045599:1107-1126 | Msa1465830:intergenic | 45.0% | |
| TGTTGTTGGATAAGGGGGTT+TGG | - | tig0045599:1156-1175 | Msa1465830:intergenic | 45.0% | |
| ATTGGAGCAATCCTCGGAAA+TGG | - | tig0045599:1215-1234 | Msa1465830:intergenic | 45.0% | |
| AATGAAGTTACCGGTAGGGA+AGG | - | tig0045599:1253-1272 | Msa1465830:intergenic | 45.0% | |
| CATGTATCTTGTGACGGTGT+TGG | + | tig0045599:1434-1453 | Msa1465830:intron | 45.0% | |
| AGACCGACACTTCTGATAGA+AGG | - | tig0045599:1690-1709 | Msa1465830:intergenic | 45.0% | |
| TGGCAGCCATAAGTATTCGA+AGG | + | tig0045599:2067-2086 | Msa1465830:intron | 45.0% | |
| GTAGAAAGGGGGGAGTAAAA+AGG | - | tig0045599:2256-2275 | Msa1465830:intergenic | 45.0% | |
| !! | TTACCCTGGACTTTTGGCTA+AGG | - | tig0045599:2420-2439 | Msa1465830:intergenic | 45.0% |
| GCAGTCTTGGTACAGATGAA+GGG | + | tig0045599:2485-2504 | Msa1465830:CDS | 45.0% | |
| TTACTGGATGCTAGTGGTTC+AGG | - | tig0045599:2523-2542 | Msa1465830:intergenic | 45.0% | |
| ACAGACTTACTGGATGCTAG+TGG | - | tig0045599:2529-2548 | Msa1465830:intergenic | 45.0% | |
| AGCATCCAGTAAGTCTGTTG+TGG | + | tig0045599:2531-2550 | Msa1465830:CDS | 45.0% | |
| CTGTTGTGGAGAAAATTGCC+CGG | + | tig0045599:2545-2564 | Msa1465830:CDS | 45.0% | |
| GAAGCATGCAATGCAATGCA+AGG | - | tig0045599:919-938 | Msa1465830:intergenic | 45.0% | |
| TGGCGAGATGATGAAATGAG+AGG | - | tig0045599:982-1001 | Msa1465830:intergenic | 45.0% | |
| TGGCTGAGTTTGACGGAAAT+GGG | - | tig0045599:1106-1125 | Msa1465830:intergenic | 45.0% | |
| TTGGCTGAGTTTGACGGAAA+TGG | - | tig0045599:1107-1126 | Msa1465830:intergenic | 45.0% | |
| TGTTGTTGGATAAGGGGGTT+TGG | - | tig0045599:1156-1175 | Msa1465830:intergenic | 45.0% | |
| ATTGGAGCAATCCTCGGAAA+TGG | - | tig0045599:1215-1234 | Msa1465830:intergenic | 45.0% | |
| AATGAAGTTACCGGTAGGGA+AGG | - | tig0045599:1253-1272 | Msa1465830:intergenic | 45.0% | |
| CATGTATCTTGTGACGGTGT+TGG | + | tig0045599:1434-1453 | Msa1465830:intron | 45.0% | |
| AGACCGACACTTCTGATAGA+AGG | - | tig0045599:1690-1709 | Msa1465830:intergenic | 45.0% | |
| TGGCAGCCATAAGTATTCGA+AGG | + | tig0045599:2067-2086 | Msa1465830:intron | 45.0% | |
| GTAGAAAGGGGGGAGTAAAA+AGG | - | tig0045599:2256-2275 | Msa1465830:intergenic | 45.0% | |
| !! | TTACCCTGGACTTTTGGCTA+AGG | - | tig0045599:2420-2439 | Msa1465830:intergenic | 45.0% |
| GCAGTCTTGGTACAGATGAA+GGG | + | tig0045599:2485-2504 | Msa1465830:CDS | 45.0% | |
| TTACTGGATGCTAGTGGTTC+AGG | - | tig0045599:2523-2542 | Msa1465830:intergenic | 45.0% | |
| ACAGACTTACTGGATGCTAG+TGG | - | tig0045599:2529-2548 | Msa1465830:intergenic | 45.0% | |
| AGCATCCAGTAAGTCTGTTG+TGG | + | tig0045599:2531-2550 | Msa1465830:CDS | 45.0% | |
| CTGTTGTGGAGAAAATTGCC+CGG | + | tig0045599:2545-2564 | Msa1465830:CDS | 45.0% | |
| AGTTTGACGGAAATGGGAGC+GGG | - | tig0045599:1100-1119 | Msa1465830:intergenic | 50.0% | |
| GAGTTTGACGGAAATGGGAG+CGG | - | tig0045599:1101-1120 | Msa1465830:intergenic | 50.0% | |
| !! | TAGGTGGCGGTGGTTGATTT+TGG | - | tig0045599:1126-1145 | Msa1465830:intergenic | 50.0% |
| ! | TTACGACGATGCCATTTCCG+AGG | + | tig0045599:1201-1220 | Msa1465830:CDS | 50.0% |
| ACTTCACGTTCCTTCCCTAC+CGG | + | tig0045599:1240-1259 | Msa1465830:CDS | 50.0% | |
| GTAGTCTCAGGTGTCTGTGT+CGG | - | tig0045599:1346-1365 | Msa1465830:intergenic | 50.0% | |
| TGCCTCTCACCGTATTCAAG+CGG | + | tig0045599:2371-2390 | Msa1465830:CDS | 50.0% | |
| TGCACCAACCCGCTTGAATA+CGG | - | tig0045599:2383-2402 | Msa1465830:intergenic | 50.0% | |
| !!! | GCGGGTTGGTGCATATTTTG+AGG | + | tig0045599:2390-2409 | Msa1465830:CDS | 50.0% |
| TCAAGCAGTGATGGCAGTCT+TGG | + | tig0045599:2472-2491 | Msa1465830:CDS | 50.0% | |
| GGCAGTCTTGGTACAGATGA+AGG | + | tig0045599:2484-2503 | Msa1465830:CDS | 50.0% | |
| TGCGTGATCAACAACAAGCC+TGG | + | tig0045599:2584-2603 | Msa1465830:CDS | 50.0% | |
| TGATCAACAACAAGCCTGGC+AGG | + | tig0045599:2588-2607 | Msa1465830:CDS | 50.0% | |
| AGTTTGACGGAAATGGGAGC+GGG | - | tig0045599:1100-1119 | Msa1465830:intergenic | 50.0% | |
| GAGTTTGACGGAAATGGGAG+CGG | - | tig0045599:1101-1120 | Msa1465830:intergenic | 50.0% | |
| !! | TAGGTGGCGGTGGTTGATTT+TGG | - | tig0045599:1126-1145 | Msa1465830:intergenic | 50.0% |
| ! | TTACGACGATGCCATTTCCG+AGG | + | tig0045599:1201-1220 | Msa1465830:CDS | 50.0% |
| ACTTCACGTTCCTTCCCTAC+CGG | + | tig0045599:1240-1259 | Msa1465830:CDS | 50.0% | |
| GTAGTCTCAGGTGTCTGTGT+CGG | - | tig0045599:1346-1365 | Msa1465830:intergenic | 50.0% | |
| TGCCTCTCACCGTATTCAAG+CGG | + | tig0045599:2371-2390 | Msa1465830:CDS | 50.0% | |
| TGCACCAACCCGCTTGAATA+CGG | - | tig0045599:2383-2402 | Msa1465830:intergenic | 50.0% | |
| !!! | GCGGGTTGGTGCATATTTTG+AGG | + | tig0045599:2390-2409 | Msa1465830:CDS | 50.0% |
| TCAAGCAGTGATGGCAGTCT+TGG | + | tig0045599:2472-2491 | Msa1465830:CDS | 50.0% | |
| GGCAGTCTTGGTACAGATGA+AGG | + | tig0045599:2484-2503 | Msa1465830:CDS | 50.0% | |
| TGCGTGATCAACAACAAGCC+TGG | + | tig0045599:2584-2603 | Msa1465830:CDS | 50.0% | |
| TGATCAACAACAAGCCTGGC+AGG | + | tig0045599:2588-2607 | Msa1465830:CDS | 50.0% | |
| AGGAACGTAGATGGCGCCAT+GGG | - | tig0045599:1029-1048 | Msa1465830:intergenic | 55.0% | |
| GTGGTGAGGAGGAACGTAGA+TGG | - | tig0045599:1038-1057 | Msa1465830:intergenic | 55.0% | |
| TTTGACGGAAATGGGAGCGG+GGG | - | tig0045599:1098-1117 | Msa1465830:intergenic | 55.0% | |
| GTTTGACGGAAATGGGAGCG+GGG | - | tig0045599:1099-1118 | Msa1465830:intergenic | 55.0% | |
| GTTTGGAGAGTGGTAGGTGG+CGG | - | tig0045599:1139-1158 | Msa1465830:intergenic | 55.0% | |
| AAGGGGGTTTGGAGAGTGGT+AGG | - | tig0045599:1145-1164 | Msa1465830:intergenic | 55.0% | |
| GGATAAGGGGGTTTGGAGAG+TGG | - | tig0045599:1149-1168 | Msa1465830:intergenic | 55.0% | |
| ! | TCAGGTGTCTGTGTCGGTGT+CGG | - | tig0045599:1340-1359 | Msa1465830:intergenic | 55.0% |
| ! | GGTGTTGGACACTGACACAC+CGG | + | tig0045599:1449-1468 | Msa1465830:intron | 55.0% |
| GTGTTGGACACTGACACACC+GGG | + | tig0045599:1450-1469 | Msa1465830:intron | 55.0% | |
| GCCTCTCACCGTATTCAAGC+GGG | + | tig0045599:2372-2391 | Msa1465830:CDS | 55.0% | |
| ACCCGCTTGAATACGGTGAG+AGG | - | tig0045599:2376-2395 | Msa1465830:intergenic | 55.0% | |
| CTCACCGTATTCAAGCGGGT+TGG | + | tig0045599:2376-2395 | Msa1465830:CDS | 55.0% | |
| AGGAACGTAGATGGCGCCAT+GGG | - | tig0045599:1029-1048 | Msa1465830:intergenic | 55.0% | |
| GTGGTGAGGAGGAACGTAGA+TGG | - | tig0045599:1038-1057 | Msa1465830:intergenic | 55.0% | |
| TTTGACGGAAATGGGAGCGG+GGG | - | tig0045599:1098-1117 | Msa1465830:intergenic | 55.0% | |
| GTTTGACGGAAATGGGAGCG+GGG | - | tig0045599:1099-1118 | Msa1465830:intergenic | 55.0% | |
| GTTTGGAGAGTGGTAGGTGG+CGG | - | tig0045599:1139-1158 | Msa1465830:intergenic | 55.0% | |
| AAGGGGGTTTGGAGAGTGGT+AGG | - | tig0045599:1145-1164 | Msa1465830:intergenic | 55.0% | |
| GGATAAGGGGGTTTGGAGAG+TGG | - | tig0045599:1149-1168 | Msa1465830:intergenic | 55.0% | |
| ! | TCAGGTGTCTGTGTCGGTGT+CGG | - | tig0045599:1340-1359 | Msa1465830:intergenic | 55.0% |
| ! | GGTGTTGGACACTGACACAC+CGG | + | tig0045599:1449-1468 | Msa1465830:intron | 55.0% |
| GTGTTGGACACTGACACACC+GGG | + | tig0045599:1450-1469 | Msa1465830:intron | 55.0% | |
| GCCTCTCACCGTATTCAAGC+GGG | + | tig0045599:2372-2391 | Msa1465830:CDS | 55.0% | |
| ACCCGCTTGAATACGGTGAG+AGG | - | tig0045599:2376-2395 | Msa1465830:intergenic | 55.0% | |
| CTCACCGTATTCAAGCGGGT+TGG | + | tig0045599:2376-2395 | Msa1465830:CDS | 55.0% | |
| TCGGTAAAACGGCGTCGTGC+TGG | - | tig0045599:895-914 | None:intergenic | 60.0% | |
| AACGTAGATGGCGCCATGGG+AGG | - | tig0045599:1026-1045 | Msa1465830:intergenic | 60.0% | |
| GAGGAACGTAGATGGCGCCA+TGG | - | tig0045599:1030-1049 | Msa1465830:intergenic | 60.0% | |
| AGGTAACGACGGAGCGGAGA+CGG | - | tig0045599:1060-1079 | Msa1465830:intergenic | 60.0% | |
| AATGGGAGCGGGGGAGTTAG+CGG | - | tig0045599:1089-1108 | Msa1465830:intergenic | 60.0% | |
| GGGGTTTGGAGAGTGGTAGG+TGG | - | tig0045599:1142-1161 | Msa1465830:intergenic | 60.0% | |
| !! | GCTTCAGGTGTCGGTGCTTC+AGG | - | tig0045599:1316-1335 | Msa1465830:intergenic | 60.0% |
| !! | GGTGTCGGTGCTTCAGGTGT+CGG | - | tig0045599:1325-1344 | Msa1465830:intergenic | 60.0% |
| !! | TGTGTCGGTGTCGGTGCTTC+AGG | - | tig0045599:1331-1350 | Msa1465830:intergenic | 60.0% |
| CCTCTGGTAGAAGCTGTGCC+CGG | - | tig0045599:1471-1490 | Msa1465830:intergenic | 60.0% | |
| CGAAAGACGGCCTCAGAGAG+AGG | + | tig0045599:2139-2158 | Msa1465830:CDS | 60.0% | |
| TCGGTAAAACGGCGTCGTGC+TGG | - | tig0045599:895-914 | Msa1465830:intergenic | 60.0% | |
| AACGTAGATGGCGCCATGGG+AGG | - | tig0045599:1026-1045 | Msa1465830:intergenic | 60.0% | |
| GAGGAACGTAGATGGCGCCA+TGG | - | tig0045599:1030-1049 | Msa1465830:intergenic | 60.0% | |
| AGGTAACGACGGAGCGGAGA+CGG | - | tig0045599:1060-1079 | Msa1465830:intergenic | 60.0% | |
| AATGGGAGCGGGGGAGTTAG+CGG | - | tig0045599:1089-1108 | Msa1465830:intergenic | 60.0% | |
| GGGGTTTGGAGAGTGGTAGG+TGG | - | tig0045599:1142-1161 | Msa1465830:intergenic | 60.0% | |
| !! | GCTTCAGGTGTCGGTGCTTC+AGG | - | tig0045599:1316-1335 | Msa1465830:intergenic | 60.0% |
| !! | GGTGTCGGTGCTTCAGGTGT+CGG | - | tig0045599:1325-1344 | Msa1465830:intergenic | 60.0% |
| !! | TGTGTCGGTGTCGGTGCTTC+AGG | - | tig0045599:1331-1350 | Msa1465830:intergenic | 60.0% |
| CCTCTGGTAGAAGCTGTGCC+CGG | - | tig0045599:1471-1490 | Msa1465830:intergenic | 60.0% | |
| CGAAAGACGGCCTCAGAGAG+AGG | + | tig0045599:2139-2158 | Msa1465830:CDS | 60.0% | |
| CAGCGAAGGGCGGTCCTTCA+TGG | - | tig0045599:1002-1021 | Msa1465830:intergenic | 65.0% | |
| CATGGGAGGACAGCGAAGGG+CGG | - | tig0045599:1012-1031 | Msa1465830:intergenic | 65.0% | |
| CGCCATGGGAGGACAGCGAA+GGG | - | tig0045599:1015-1034 | Msa1465830:intergenic | 65.0% | |
| TAACGACGGAGCGGAGACGG+TGG | - | tig0045599:1057-1076 | Msa1465830:intergenic | 65.0% | |
| ! | TGGAGAGTGGTAGGTGGCGG+TGG | - | tig0045599:1136-1155 | Msa1465830:intergenic | 65.0% |
| CCGGGCACAGCTTCTACCAG+AGG | + | tig0045599:1468-1487 | Msa1465830:intron | 65.0% | |
| CAGCGAAGGGCGGTCCTTCA+TGG | - | tig0045599:1002-1021 | Msa1465830:intergenic | 65.0% | |
| CATGGGAGGACAGCGAAGGG+CGG | - | tig0045599:1012-1031 | Msa1465830:intergenic | 65.0% | |
| CGCCATGGGAGGACAGCGAA+GGG | - | tig0045599:1015-1034 | Msa1465830:intergenic | 65.0% | |
| TAACGACGGAGCGGAGACGG+TGG | - | tig0045599:1057-1076 | Msa1465830:intergenic | 65.0% | |
| ! | TGGAGAGTGGTAGGTGGCGG+TGG | - | tig0045599:1136-1155 | Msa1465830:intergenic | 65.0% |
| CCGGGCACAGCTTCTACCAG+AGG | + | tig0045599:1468-1487 | Msa1465830:intron | 65.0% | |
| CGCCCTTCGCTGTCCTCCCA+TGG | + | tig0045599:1010-1029 | Msa1465830:CDS | 70.0% | |
| GCGCCATGGGAGGACAGCGA+AGG | - | tig0045599:1016-1035 | Msa1465830:intergenic | 70.0% | |
| GAGCGGAGACGGTGGTGAGG+AGG | - | tig0045599:1049-1068 | Msa1465830:intergenic | 70.0% | |
| ACGGAGCGGAGACGGTGGTG+AGG | - | tig0045599:1052-1071 | Msa1465830:intergenic | 70.0% | |
| CGGCGGAGGTAACGACGGAG+CGG | - | tig0045599:1066-1085 | Msa1465830:intergenic | 70.0% | |
| AGCGGCGGCGGAGGTAACGA+CGG | - | tig0045599:1071-1090 | Msa1465830:intergenic | 70.0% | |
| CGCCCTTCGCTGTCCTCCCA+TGG | + | tig0045599:1010-1029 | Msa1465830:CDS | 70.0% | |
| GCGCCATGGGAGGACAGCGA+AGG | - | tig0045599:1016-1035 | Msa1465830:intergenic | 70.0% | |
| GAGCGGAGACGGTGGTGAGG+AGG | - | tig0045599:1049-1068 | Msa1465830:intergenic | 70.0% | |
| ACGGAGCGGAGACGGTGGTG+AGG | - | tig0045599:1052-1071 | Msa1465830:intergenic | 70.0% | |
| CGGCGGAGGTAACGACGGAG+CGG | - | tig0045599:1066-1085 | Msa1465830:intergenic | 70.0% | |
| AGCGGCGGCGGAGGTAACGA+CGG | - | tig0045599:1071-1090 | Msa1465830:intergenic | 70.0% | |
| AGCGGGGGAGTTAGCGGCGG+CGG | - | tig0045599:1083-1102 | Msa1465830:intergenic | 75.0% | |
| GGGAGCGGGGGAGTTAGCGG+CGG | - | tig0045599:1086-1105 | Msa1465830:intergenic | 75.0% | |
| AGCGGGGGAGTTAGCGGCGG+CGG | - | tig0045599:1083-1102 | Msa1465830:intergenic | 75.0% | |
| GGGAGCGGGGGAGTTAGCGG+CGG | - | tig0045599:1086-1105 | Msa1465830:intergenic | 75.0% | |
| ! | GGGGGAGTTAGCGGCGGCGG+AGG | - | tig0045599:1080-1099 | Msa1465830:intergenic | 80.0% |
| ! | GGGGGAGTTAGCGGCGGCGG+AGG | - | tig0045599:1080-1099 | Msa1465830:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0045599 | gene | 837 | 2657 | 837 | ID=Msa1465830;Name=Msa1465830 |
| tig0045599 | mRNA | 837 | 2657 | 837 | ID=Msa1465830-mRNA-1;Parent=Msa1465830;Name=Msa1465830-mRNA-1;_AED=0.00;_eAED=0.00;_QI=95|1|1|1|1|1|4|30|278 |
| tig0045599 | exon | 837 | 1261 | 837 | ID=Msa1465830-mRNA-1:exon:24904;Parent=Msa1465830-mRNA-1 |
| tig0045599 | exon | 1814 | 1968 | 1814 | ID=Msa1465830-mRNA-1:exon:24905;Parent=Msa1465830-mRNA-1 |
| tig0045599 | exon | 2073 | 2160 | 2073 | ID=Msa1465830-mRNA-1:exon:24906;Parent=Msa1465830-mRNA-1 |
| tig0045599 | exon | 2364 | 2657 | 2364 | ID=Msa1465830-mRNA-1:exon:24907;Parent=Msa1465830-mRNA-1 |
| tig0045599 | five_prime_UTR | 837 | 931 | 837 | ID=Msa1465830-mRNA-1:five_prime_utr;Parent=Msa1465830-mRNA-1 |
| tig0045599 | CDS | 932 | 1261 | 932 | ID=Msa1465830-mRNA-1:cds;Parent=Msa1465830-mRNA-1 |
| tig0045599 | CDS | 1814 | 1968 | 1814 | ID=Msa1465830-mRNA-1:cds;Parent=Msa1465830-mRNA-1 |
| tig0045599 | CDS | 2073 | 2160 | 2073 | ID=Msa1465830-mRNA-1:cds;Parent=Msa1465830-mRNA-1 |
| tig0045599 | CDS | 2364 | 2627 | 2364 | ID=Msa1465830-mRNA-1:cds;Parent=Msa1465830-mRNA-1 |
| tig0045599 | three_prime_UTR | 2628 | 2657 | 2628 | ID=Msa1465830-mRNA-1:three_prime_utr;Parent=Msa1465830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
