Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466230 | XP_013463523.1 | 98.585 | 212 | 3 | 0 | 1 | 212 | 812 | 1023 | 1.40e-139 | 427 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466230 | sp|B5X0I6|VIP6_ARATH | 59.346 | 214 | 77 | 4 | 1 | 204 | 812 | 1025 | 2.02e-58 | 201 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466230 | A0A072V869 | 98.585 | 212 | 3 | 0 | 1 | 212 | 812 | 1023 | 6.71e-140 | 427 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1336290 | Msa1466230 | 0.808057 | 3.733192e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466230 | MtrunA17_Chr2g0300501 | 98.585 | 212 | 3 | 0 | 1 | 212 | 812 | 1023 | 1.29e-143 | 427 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 50 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTCGTTCATCTGAGTTT+GGG | 0.246747 | tig0046255:-1681 | Msa1466230:intergenic |
| CATCCTCGTTCATCTGAGTT+TGG | 0.251810 | tig0046255:-1682 | Msa1466230:intergenic |
| CTGAGTTTGGGGCTCCTCTC+TGG | 0.288118 | tig0046255:-1669 | Msa1466230:intergenic |
| GCTTCCAACCTACATATTCA+TGG | 0.349041 | tig0046255:+107 | Msa1466230:CDS |
| TTAGTGAGAGCAACGGTTGC+AGG | 0.351297 | tig0046255:+44 | None:intergenic |
| TGAAGAGCAAAGAAAGATTC+AGG | 0.359712 | tig0046255:+292 | Msa1466230:CDS |
| GGCTGATATGATGGATGAAC+AGG | 0.360374 | tig0046255:+1616 | Msa1466230:CDS |
| GCATGAGGACGAATTGAAAA+TGG | 0.367183 | tig0046255:+425 | Msa1466230:CDS |
| ATACTGCACCCACTTACTTT+CGG | 0.378856 | tig0046255:+163 | Msa1466230:CDS |
| CACGGTCTTCTCGCATTAGC+TGG | 0.405913 | tig0046255:+1716 | Msa1466230:CDS |
| GAGACAGGAACTTGCTCGTC+AGG | 0.417270 | tig0046255:+238 | Msa1466230:CDS |
| ATTGAAAATGGTGCAACAAC+AGG | 0.449547 | tig0046255:+437 | Msa1466230:CDS |
| TATGATGGATGAACAGGAAA+TGG | 0.467895 | tig0046255:+1622 | Msa1466230:CDS |
| AGGTGGAAAGAGGAGGAAGA+AGG | 0.482244 | tig0046255:+1553 | Msa1466230:CDS |
| GGCTGAGGAAGCACGGCGCA+AGG | 0.486164 | tig0046255:+268 | Msa1466230:CDS |
| ACTTGCTCGTCAGGTTGCAT+TGG | 0.490048 | tig0046255:+247 | Msa1466230:CDS |
| AGAGAAGAAAAGGTGGAAAG+AGG | 0.490094 | tig0046255:+1543 | Msa1466230:CDS |
| AGAAACAGAGGCTGATATGA+TGG | 0.492446 | tig0046255:+1607 | Msa1466230:CDS |
| ACAACAAATACGGCAGAGAC+AGG | 0.509727 | tig0046255:+223 | Msa1466230:CDS |
| GAAGAAAAGGTGGAAAGAGG+AGG | 0.522338 | tig0046255:+1546 | Msa1466230:CDS |
| CATCAAATCCATGAATATGT+AGG | 0.524899 | tig0046255:-115 | Msa1466230:intergenic |
| CACATTCAAAACGGAGGGAA+AGG | 0.531936 | tig0046255:+1486 | Msa1466230:CDS |
| AGCTAATGCGAGAAGACCGT+GGG | 0.536949 | tig0046255:-1714 | Msa1466230:intergenic |
| AAATCCATGAATATGTAGGT+TGG | 0.551401 | tig0046255:-111 | Msa1466230:intergenic |
| TCGTCAGGTTGCATTGGCTG+AGG | 0.552322 | tig0046255:+253 | Msa1466230:CDS |
| TCCTCGTTCATCTGAGTTTG+GGG | 0.555015 | tig0046255:-1680 | Msa1466230:intergenic |
| ATTTGCATTTCTAGGAACAA+TGG | 0.555331 | tig0046255:+1453 | Msa1466230:intron |
| AACTCAGATGAACGAGGATG+AGG | 0.558036 | tig0046255:+1685 | Msa1466230:CDS |
| AGTCCCACCGTCTTCATCAT+CGG | 0.558633 | tig0046255:-1510 | Msa1466230:intergenic |
| AACGTGAAGAACAACAAATA+CGG | 0.559581 | tig0046255:+213 | Msa1466230:CDS |
| TTGCATTGGCTGAGGAAGCA+CGG | 0.565516 | tig0046255:+261 | Msa1466230:CDS |
| AAGAAGATTGACACTCATGT+TGG | 0.569285 | tig0046255:+140 | Msa1466230:CDS |
| TCTCGCATTAGCTGGACTTG+AGG | 0.580974 | tig0046255:+1724 | Msa1466230:CDS |
| AGAGCAGCACACATTCAAAA+CGG | 0.586172 | tig0046255:+1477 | Msa1466230:CDS |
| TAGTGAGAGCAACGGTTGCA+GGG | 0.589453 | tig0046255:+45 | None:intergenic |
| GAAAATGGTGCAACAACAGG+AGG | 0.592190 | tig0046255:+440 | Msa1466230:CDS |
| CTAAATGTTAGTGAGAGCAA+CGG | 0.605415 | tig0046255:+37 | None:intergenic |
| CAGCACACATTCAAAACGGA+GGG | 0.615167 | tig0046255:+1481 | Msa1466230:CDS |
| GATGGATGAACAGGAAATGG+AGG | 0.616780 | tig0046255:+1625 | Msa1466230:CDS |
| GAAAGGTCCGATGATGAAGA+CGG | 0.621871 | tig0046255:+1503 | Msa1466230:CDS |
| GGTCCGATGATGAAGACGGT+GGG | 0.641442 | tig0046255:+1507 | Msa1466230:CDS |
| CAGCTAATGCGAGAAGACCG+TGG | 0.652542 | tig0046255:-1715 | Msa1466230:intergenic |
| AGGTCCGATGATGAAGACGG+TGG | 0.655582 | tig0046255:+1506 | Msa1466230:CDS |
| GCAGCACACATTCAAAACGG+AGG | 0.672994 | tig0046255:+1480 | Msa1466230:CDS |
| CAATGACACAGAAGAAACAG+AGG | 0.683420 | tig0046255:+1595 | Msa1466230:CDS |
| GATGGACAGAAGAAAGCATG+AGG | 0.688027 | tig0046255:+410 | Msa1466230:intron |
| GAGGATGAGGAAAATCCCCA+CGG | 0.705879 | tig0046255:+1698 | Msa1466230:CDS |
| GCCCCAAACTCAGATGAACG+AGG | 0.731349 | tig0046255:+1679 | Msa1466230:CDS |
| TGTTGACATGAACTCCAGAG+AGG | 0.734294 | tig0046255:+1655 | Msa1466230:CDS |
| GCTAATGCGAGAAGACCGTG+GGG | 0.786540 | tig0046255:-1713 | Msa1466220:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTCATATCTAATTTAATAT+GGG | - | tig0046255:548-567 | Msa1466230:intergenic | 15.0% |
| !! | AAGTCATATCTAATTTAATA+TGG | - | tig0046255:549-568 | Msa1466230:intergenic | 15.0% |
| !!! | TGTATAGTTTTTAATTTTGA+AGG | + | tig0046255:1081-1100 | Msa1466230:intron | 15.0% |
| !!! | TTAATTTTGAAGGTTATTTT+TGG | + | tig0046255:1091-1110 | Msa1466230:intron | 15.0% |
| !! | AAATTATTATCAATGTGTTA+GGG | - | tig0046255:1172-1191 | Msa1466230:intergenic | 15.0% |
| !!! | TTGATAATAATTTGAGAAAA+TGG | + | tig0046255:1179-1198 | Msa1466230:intron | 15.0% |
| !! | AGTCATATCTAATTTAATAT+GGG | - | tig0046255:548-567 | Msa1466230:intergenic | 15.0% |
| !! | AAGTCATATCTAATTTAATA+TGG | - | tig0046255:549-568 | Msa1466230:intergenic | 15.0% |
| !!! | TGTATAGTTTTTAATTTTGA+AGG | + | tig0046255:1081-1100 | Msa1466230:intron | 15.0% |
| !!! | TTAATTTTGAAGGTTATTTT+TGG | + | tig0046255:1091-1110 | Msa1466230:intron | 15.0% |
| !! | AAATTATTATCAATGTGTTA+GGG | - | tig0046255:1172-1191 | Msa1466230:intergenic | 15.0% |
| !!! | TTGATAATAATTTGAGAAAA+TGG | + | tig0046255:1179-1198 | Msa1466230:intron | 15.0% |
| !!! | TTGTTTTGATTTGAAATAGA+TGG | + | tig0046255:392-411 | Msa1466230:intron | 20.0% |
| !! | AAAAGGAAATATATTCAATG+AGG | - | tig0046255:932-951 | Msa1466230:intergenic | 20.0% |
| !!! | GTAAGATCATTTTCATTAAA+AGG | - | tig0046255:949-968 | Msa1466230:intergenic | 20.0% |
| !! | CAAATTATTATCAATGTGTT+AGG | - | tig0046255:1173-1192 | Msa1466230:intergenic | 20.0% |
| !! | ATTTGAGAAAATGGAAATTA+TGG | + | tig0046255:1188-1207 | Msa1466230:intron | 20.0% |
| !! | TAAAAAAATCTAATGTGCTT+TGG | + | tig0046255:1415-1434 | Msa1466230:intron | 20.0% |
| !!! | TTGTTTTGATTTGAAATAGA+TGG | + | tig0046255:392-411 | Msa1466230:intron | 20.0% |
| !! | AAAAGGAAATATATTCAATG+AGG | - | tig0046255:932-951 | Msa1466230:intergenic | 20.0% |
| !!! | GTAAGATCATTTTCATTAAA+AGG | - | tig0046255:949-968 | Msa1466230:intergenic | 20.0% |
| !! | CAAATTATTATCAATGTGTT+AGG | - | tig0046255:1173-1192 | Msa1466230:intergenic | 20.0% |
| !! | ATTTGAGAAAATGGAAATTA+TGG | + | tig0046255:1188-1207 | Msa1466230:intron | 20.0% |
| !! | TAAAAAAATCTAATGTGCTT+TGG | + | tig0046255:1415-1434 | Msa1466230:intron | 20.0% |
| !! | CTAGCAACATTTTTATAAGT+GGG | - | tig0046255:772-791 | Msa1466230:intergenic | 25.0% |
| !! | TCTAGCAACATTTTTATAAG+TGG | - | tig0046255:773-792 | Msa1466230:intergenic | 25.0% |
| ! | ACTTATAACGAGTTTATAAG+TGG | + | tig0046255:814-833 | Msa1466230:intron | 25.0% |
| ! | CTTATAACGAGTTTATAAGT+GGG | + | tig0046255:815-834 | Msa1466230:intron | 25.0% |
| ! | GTCAACAGTTCTTAAAATTT+GGG | - | tig0046255:892-911 | Msa1466230:intergenic | 25.0% |
| ! | TGTCAACAGTTCTTAAAATT+TGG | - | tig0046255:893-912 | Msa1466230:intergenic | 25.0% |
| ! | GTGCTTCATATATAACAAAT+AGG | - | tig0046255:1117-1136 | Msa1466230:intergenic | 25.0% |
| ! | TTAAATGTAACCATATGTGT+CGG | + | tig0046255:1211-1230 | Msa1466230:intron | 25.0% |
| ! | TTAAGGTTACATTCATAAAG+AGG | - | tig0046255:1332-1351 | Msa1466230:intergenic | 25.0% |
| !! | TTTTTATACAAACGTATGAC+AGG | - | tig0046255:1401-1420 | Msa1466230:intergenic | 25.0% |
| !! | CTAGCAACATTTTTATAAGT+GGG | - | tig0046255:772-791 | Msa1466230:intergenic | 25.0% |
| !! | TCTAGCAACATTTTTATAAG+TGG | - | tig0046255:773-792 | Msa1466230:intergenic | 25.0% |
| ! | ACTTATAACGAGTTTATAAG+TGG | + | tig0046255:814-833 | Msa1466230:intron | 25.0% |
| ! | CTTATAACGAGTTTATAAGT+GGG | + | tig0046255:815-834 | Msa1466230:intron | 25.0% |
| ! | GTCAACAGTTCTTAAAATTT+GGG | - | tig0046255:892-911 | Msa1466230:intergenic | 25.0% |
| ! | TGTCAACAGTTCTTAAAATT+TGG | - | tig0046255:893-912 | Msa1466230:intergenic | 25.0% |
| ! | GTGCTTCATATATAACAAAT+AGG | - | tig0046255:1117-1136 | Msa1466230:intergenic | 25.0% |
| ! | TTAAATGTAACCATATGTGT+CGG | + | tig0046255:1211-1230 | Msa1466230:intron | 25.0% |
| ! | TTAAGGTTACATTCATAAAG+AGG | - | tig0046255:1332-1351 | Msa1466230:intergenic | 25.0% |
| !! | TTTTTATACAAACGTATGAC+AGG | - | tig0046255:1401-1420 | Msa1466230:intergenic | 25.0% |
| AAATCCATGAATATGTAGGT+TGG | - | tig0046255:114-133 | Msa1466230:intergenic | 30.0% | |
| CATCAAATCCATGAATATGT+AGG | - | tig0046255:118-137 | Msa1466230:intergenic | 30.0% | |
| AACGTGAAGAACAACAAATA+CGG | + | tig0046255:213-232 | Msa1466230:CDS | 30.0% | |
| ! | GGAAAATTTTAAGCGTGTTA+AGG | + | tig0046255:461-480 | Msa1466230:CDS | 30.0% |
| GTGGTCTTTCAAAAGTTATT+TGG | + | tig0046255:496-515 | Msa1466230:intron | 30.0% | |
| AAAACCGAATTATAAGGTGA+GGG | - | tig0046255:599-618 | Msa1466230:intergenic | 30.0% | |
| AACCACAAAACCGAATTATA+AGG | - | tig0046255:605-624 | Msa1466230:intergenic | 30.0% | |
| TCTGATACCATCTAAGAATT+TGG | + | tig0046255:709-728 | Msa1466230:intron | 30.0% | |
| TACCATCTAAGAATTTGGAT+AGG | + | tig0046255:714-733 | Msa1466230:intron | 30.0% | |
| ATCCTATCCAAATTCTTAGA+TGG | - | tig0046255:719-738 | Msa1466230:intergenic | 30.0% | |
| ACTCGTTATAAGTTCTACAT+TGG | - | tig0046255:807-826 | Msa1466230:intergenic | 30.0% | |
| ! | CAGTTCTTAAAATTTGGGTT+TGG | - | tig0046255:887-906 | Msa1466230:intergenic | 30.0% |
| TATTCTTGTGATTCAGAACT+AGG | - | tig0046255:1001-1020 | Msa1466230:intergenic | 30.0% | |
| AGTAAATAGAAACAAACCGA+TGG | + | tig0046255:1029-1048 | Msa1466230:intron | 30.0% | |
| AAGCTTCTATTTGCATTTCT+AGG | + | tig0046255:1445-1464 | Msa1466230:intron | 30.0% | |
| ! | ATTTGCATTTCTAGGAACAA+TGG | + | tig0046255:1453-1472 | Msa1466230:intron | 30.0% |
| AAATCCATGAATATGTAGGT+TGG | - | tig0046255:114-133 | Msa1466230:intergenic | 30.0% | |
| CATCAAATCCATGAATATGT+AGG | - | tig0046255:118-137 | Msa1466230:intergenic | 30.0% | |
| AACGTGAAGAACAACAAATA+CGG | + | tig0046255:213-232 | Msa1466230:CDS | 30.0% | |
| ! | GGAAAATTTTAAGCGTGTTA+AGG | + | tig0046255:461-480 | Msa1466230:CDS | 30.0% |
| GTGGTCTTTCAAAAGTTATT+TGG | + | tig0046255:496-515 | Msa1466230:intron | 30.0% | |
| AAAACCGAATTATAAGGTGA+GGG | - | tig0046255:599-618 | Msa1466230:intergenic | 30.0% | |
| AACCACAAAACCGAATTATA+AGG | - | tig0046255:605-624 | Msa1466230:intergenic | 30.0% | |
| TCTGATACCATCTAAGAATT+TGG | + | tig0046255:709-728 | Msa1466230:intron | 30.0% | |
| TACCATCTAAGAATTTGGAT+AGG | + | tig0046255:714-733 | Msa1466230:intron | 30.0% | |
| ATCCTATCCAAATTCTTAGA+TGG | - | tig0046255:719-738 | Msa1466230:intergenic | 30.0% | |
| ACTCGTTATAAGTTCTACAT+TGG | - | tig0046255:807-826 | Msa1466230:intergenic | 30.0% | |
| ! | CAGTTCTTAAAATTTGGGTT+TGG | - | tig0046255:887-906 | Msa1466230:intergenic | 30.0% |
| TATTCTTGTGATTCAGAACT+AGG | - | tig0046255:1001-1020 | Msa1466230:intergenic | 30.0% | |
| AGTAAATAGAAACAAACCGA+TGG | + | tig0046255:1029-1048 | Msa1466230:intron | 30.0% | |
| AAGCTTCTATTTGCATTTCT+AGG | + | tig0046255:1445-1464 | Msa1466230:intron | 30.0% | |
| ! | ATTTGCATTTCTAGGAACAA+TGG | + | tig0046255:1453-1472 | Msa1466230:intron | 30.0% |
| AAGAAGATTGACACTCATGT+TGG | + | tig0046255:140-159 | Msa1466230:CDS | 35.0% | |
| TGAAGAGCAAAGAAAGATTC+AGG | + | tig0046255:292-311 | Msa1466230:CDS | 35.0% | |
| CAGTATCTGTTTCATCACAT+TGG | + | tig0046255:335-354 | Msa1466230:intron | 35.0% | |
| ATTGAAAATGGTGCAACAAC+AGG | + | tig0046255:437-456 | Msa1466230:CDS | 35.0% | |
| ACATCCCTCACCTTATAATT+CGG | + | tig0046255:592-611 | Msa1466230:intron | 35.0% | |
| CAAAACCGAATTATAAGGTG+AGG | - | tig0046255:600-619 | Msa1466230:intergenic | 35.0% | |
| ! | CACCTTATAATTCGGTTTTG+TGG | + | tig0046255:600-619 | Msa1466230:intron | 35.0% |
| TGTGTTAAGAGTCTCACATT+GGG | - | tig0046255:641-660 | Msa1466230:intergenic | 35.0% | |
| !!! | GGATCTGATACTAGCTTTTA+AGG | + | tig0046255:735-754 | Msa1466230:intron | 35.0% |
| GTTCTACATTGGATGAGATA+AGG | - | tig0046255:796-815 | Msa1466230:intergenic | 35.0% | |
| TAACCCAATCTTACTAAAGC+CGG | - | tig0046255:862-881 | Msa1466230:intergenic | 35.0% | |
| ! | GTTATATATGAAGCACCAAC+AGG | + | tig0046255:1121-1140 | Msa1466230:intron | 35.0% |
| AACCTTAACGAGTAACTAGA+TGG | + | tig0046255:1344-1363 | Msa1466230:intron | 35.0% | |
| TACCATCTAGTTACTCGTTA+AGG | - | tig0046255:1349-1368 | Msa1466230:intergenic | 35.0% | |
| GAGTAACTAGATGGTAGTAA+AGG | + | tig0046255:1353-1372 | Msa1466230:intron | 35.0% | |
| TAACTAGATGGTAGTAAAGG+TGG | + | tig0046255:1356-1375 | Msa1466230:intron | 35.0% | |
| GACAGGATAATATACATCAG+TGG | - | tig0046255:1384-1403 | Msa1466230:intergenic | 35.0% | |
| GCTGAGAAAAAGAGAAGAAA+AGG | + | tig0046255:1533-1552 | Msa1466230:CDS | 35.0% | |
| GAGAAAAAGAGAAGAAAAGG+TGG | + | tig0046255:1536-1555 | Msa1466230:CDS | 35.0% | |
| !! | TATGATGGATGAACAGGAAA+TGG | + | tig0046255:1622-1641 | Msa1466230:CDS | 35.0% |
| AAGAAGATTGACACTCATGT+TGG | + | tig0046255:140-159 | Msa1466230:CDS | 35.0% | |
| TGAAGAGCAAAGAAAGATTC+AGG | + | tig0046255:292-311 | Msa1466230:CDS | 35.0% | |
| CAGTATCTGTTTCATCACAT+TGG | + | tig0046255:335-354 | Msa1466230:intron | 35.0% | |
| ATTGAAAATGGTGCAACAAC+AGG | + | tig0046255:437-456 | Msa1466230:CDS | 35.0% | |
| ACATCCCTCACCTTATAATT+CGG | + | tig0046255:592-611 | Msa1466230:intron | 35.0% | |
| CAAAACCGAATTATAAGGTG+AGG | - | tig0046255:600-619 | Msa1466230:intergenic | 35.0% | |
| ! | CACCTTATAATTCGGTTTTG+TGG | + | tig0046255:600-619 | Msa1466230:intron | 35.0% |
| TGTGTTAAGAGTCTCACATT+GGG | - | tig0046255:641-660 | Msa1466230:intergenic | 35.0% | |
| !!! | GGATCTGATACTAGCTTTTA+AGG | + | tig0046255:735-754 | Msa1466230:intron | 35.0% |
| GTTCTACATTGGATGAGATA+AGG | - | tig0046255:796-815 | Msa1466230:intergenic | 35.0% | |
| TAACCCAATCTTACTAAAGC+CGG | - | tig0046255:862-881 | Msa1466230:intergenic | 35.0% | |
| ! | GTTATATATGAAGCACCAAC+AGG | + | tig0046255:1121-1140 | Msa1466230:intron | 35.0% |
| AACCTTAACGAGTAACTAGA+TGG | + | tig0046255:1344-1363 | Msa1466230:intron | 35.0% | |
| TACCATCTAGTTACTCGTTA+AGG | - | tig0046255:1349-1368 | Msa1466230:intergenic | 35.0% | |
| GAGTAACTAGATGGTAGTAA+AGG | + | tig0046255:1353-1372 | Msa1466230:intron | 35.0% | |
| TAACTAGATGGTAGTAAAGG+TGG | + | tig0046255:1356-1375 | Msa1466230:intron | 35.0% | |
| GACAGGATAATATACATCAG+TGG | - | tig0046255:1384-1403 | Msa1466230:intergenic | 35.0% | |
| GCTGAGAAAAAGAGAAGAAA+AGG | + | tig0046255:1533-1552 | Msa1466230:CDS | 35.0% | |
| GAGAAAAAGAGAAGAAAAGG+TGG | + | tig0046255:1536-1555 | Msa1466230:CDS | 35.0% | |
| !! | TATGATGGATGAACAGGAAA+TGG | + | tig0046255:1622-1641 | Msa1466230:CDS | 35.0% |
| GCTTCCAACCTACATATTCA+TGG | + | tig0046255:107-126 | Msa1466230:CDS | 40.0% | |
| ATACTGCACCCACTTACTTT+CGG | + | tig0046255:163-182 | Msa1466230:CDS | 40.0% | |
| ! | TTTTGCAGCCGAAAGTAAGT+GGG | - | tig0046255:174-193 | Msa1466230:intergenic | 40.0% |
| GCATGAGGACGAATTGAAAA+TGG | + | tig0046255:425-444 | Msa1466230:CDS | 40.0% | |
| GTTAAGGTAAGAGTTCATCG+TGG | + | tig0046255:477-496 | Msa1466230:intron | 40.0% | |
| TAAGAGTCTCACATTGGGTT+TGG | - | tig0046255:636-655 | Msa1466230:intergenic | 40.0% | |
| GTGTGTTAAGAGTCTCACAT+TGG | - | tig0046255:642-661 | Msa1466230:intergenic | 40.0% | |
| TTAACACACTGTTAATGCCC+AGG | + | tig0046255:653-672 | Msa1466230:intron | 40.0% | |
| !!! | TGATACTAGCTTTTAAGGCG+AGG | + | tig0046255:740-759 | Msa1466230:intron | 40.0% |
| ! | AAGCCGGCTTTAGTAAGATT+GGG | + | tig0046255:856-875 | Msa1466230:intron | 40.0% |
| ! | GGCTTTAGTAAGATTGGGTT+AGG | + | tig0046255:861-880 | Msa1466230:intron | 40.0% |
| CCAGTAAAACTAGTTACCAG+GGG | - | tig0046255:1057-1076 | Msa1466230:intergenic | 40.0% | |
| GCCAGTAAAACTAGTTACCA+GGG | - | tig0046255:1058-1077 | Msa1466230:intergenic | 40.0% | |
| AGCCAGTAAAACTAGTTACC+AGG | - | tig0046255:1059-1078 | Msa1466230:intergenic | 40.0% | |
| AGAGCAGCACACATTCAAAA+CGG | + | tig0046255:1477-1496 | Msa1466230:CDS | 40.0% | |
| AGAGAAGAAAAGGTGGAAAG+AGG | + | tig0046255:1543-1562 | Msa1466230:CDS | 40.0% | |
| CAATGACACAGAAGAAACAG+AGG | + | tig0046255:1595-1614 | Msa1466230:CDS | 40.0% | |
| AGAAACAGAGGCTGATATGA+TGG | + | tig0046255:1607-1626 | Msa1466230:CDS | 40.0% | |
| ATCCTCGTTCATCTGAGTTT+GGG | - | tig0046255:1684-1703 | Msa1466230:intergenic | 40.0% | |
| GCTTCCAACCTACATATTCA+TGG | + | tig0046255:107-126 | Msa1466230:CDS | 40.0% | |
| ATACTGCACCCACTTACTTT+CGG | + | tig0046255:163-182 | Msa1466230:CDS | 40.0% | |
| ! | TTTTGCAGCCGAAAGTAAGT+GGG | - | tig0046255:174-193 | Msa1466230:intergenic | 40.0% |
| GCATGAGGACGAATTGAAAA+TGG | + | tig0046255:425-444 | Msa1466230:CDS | 40.0% | |
| GTTAAGGTAAGAGTTCATCG+TGG | + | tig0046255:477-496 | Msa1466230:intron | 40.0% | |
| TAAGAGTCTCACATTGGGTT+TGG | - | tig0046255:636-655 | Msa1466230:intergenic | 40.0% | |
| GTGTGTTAAGAGTCTCACAT+TGG | - | tig0046255:642-661 | Msa1466230:intergenic | 40.0% | |
| TTAACACACTGTTAATGCCC+AGG | + | tig0046255:653-672 | Msa1466230:intron | 40.0% | |
| !!! | TGATACTAGCTTTTAAGGCG+AGG | + | tig0046255:740-759 | Msa1466230:intron | 40.0% |
| ! | AAGCCGGCTTTAGTAAGATT+GGG | + | tig0046255:856-875 | Msa1466230:intron | 40.0% |
| ! | GGCTTTAGTAAGATTGGGTT+AGG | + | tig0046255:861-880 | Msa1466230:intron | 40.0% |
| CCAGTAAAACTAGTTACCAG+GGG | - | tig0046255:1057-1076 | Msa1466230:intergenic | 40.0% | |
| GCCAGTAAAACTAGTTACCA+GGG | - | tig0046255:1058-1077 | Msa1466230:intergenic | 40.0% | |
| AGCCAGTAAAACTAGTTACC+AGG | - | tig0046255:1059-1078 | Msa1466230:intergenic | 40.0% | |
| AGAGCAGCACACATTCAAAA+CGG | + | tig0046255:1477-1496 | Msa1466230:CDS | 40.0% | |
| AGAGAAGAAAAGGTGGAAAG+AGG | + | tig0046255:1543-1562 | Msa1466230:CDS | 40.0% | |
| CAATGACACAGAAGAAACAG+AGG | + | tig0046255:1595-1614 | Msa1466230:CDS | 40.0% | |
| AGAAACAGAGGCTGATATGA+TGG | + | tig0046255:1607-1626 | Msa1466230:CDS | 40.0% | |
| ATCCTCGTTCATCTGAGTTT+GGG | - | tig0046255:1684-1703 | Msa1466230:intergenic | 40.0% | |
| ! | CTTTTGCAGCCGAAAGTAAG+TGG | - | tig0046255:175-194 | Msa1466230:intergenic | 45.0% |
| ACAACAAATACGGCAGAGAC+AGG | + | tig0046255:223-242 | Msa1466230:CDS | 45.0% | |
| ! | GATGGACAGAAGAAAGCATG+AGG | + | tig0046255:410-429 | Msa1466230:intron | 45.0% |
| GAAAATGGTGCAACAACAGG+AGG | + | tig0046255:440-459 | Msa1466230:CDS | 45.0% | |
| !! | CTTACTAAAGCCGGCTTGTA+AGG | - | tig0046255:853-872 | Msa1466230:intergenic | 45.0% |
| ! | CAAGCCGGCTTTAGTAAGAT+TGG | + | tig0046255:855-874 | Msa1466230:intron | 45.0% |
| !!! | CCCCTGGTAACTAGTTTTAC+TGG | + | tig0046255:1054-1073 | Msa1466230:intron | 45.0% |
| GACTAGTATTCGTGTCCTGT+TGG | - | tig0046255:1139-1158 | Msa1466230:intergenic | 45.0% | |
| CAGCACACATTCAAAACGGA+GGG | + | tig0046255:1481-1500 | Msa1466230:CDS | 45.0% | |
| CACATTCAAAACGGAGGGAA+AGG | + | tig0046255:1486-1505 | Msa1466230:CDS | 45.0% | |
| GAAAGGTCCGATGATGAAGA+CGG | + | tig0046255:1503-1522 | Msa1466230:CDS | 45.0% | |
| GAAGAAAAGGTGGAAAGAGG+AGG | + | tig0046255:1546-1565 | Msa1466230:CDS | 45.0% | |
| !! | GGCTGATATGATGGATGAAC+AGG | + | tig0046255:1616-1635 | Msa1466230:CDS | 45.0% |
| GATGGATGAACAGGAAATGG+AGG | + | tig0046255:1625-1644 | Msa1466230:CDS | 45.0% | |
| TGTTGACATGAACTCCAGAG+AGG | + | tig0046255:1655-1674 | Msa1466230:CDS | 45.0% | |
| TCCTCGTTCATCTGAGTTTG+GGG | - | tig0046255:1683-1702 | Msa1466230:intergenic | 45.0% | |
| CATCCTCGTTCATCTGAGTT+TGG | - | tig0046255:1685-1704 | Msa1466230:intergenic | 45.0% | |
| AACTCAGATGAACGAGGATG+AGG | + | tig0046255:1685-1704 | Msa1466230:CDS | 45.0% | |
| ! | CTTTTGCAGCCGAAAGTAAG+TGG | - | tig0046255:175-194 | Msa1466230:intergenic | 45.0% |
| ACAACAAATACGGCAGAGAC+AGG | + | tig0046255:223-242 | Msa1466230:CDS | 45.0% | |
| ! | GATGGACAGAAGAAAGCATG+AGG | + | tig0046255:410-429 | Msa1466230:intron | 45.0% |
| GAAAATGGTGCAACAACAGG+AGG | + | tig0046255:440-459 | Msa1466230:CDS | 45.0% | |
| !! | CTTACTAAAGCCGGCTTGTA+AGG | - | tig0046255:853-872 | Msa1466230:intergenic | 45.0% |
| ! | CAAGCCGGCTTTAGTAAGAT+TGG | + | tig0046255:855-874 | Msa1466230:intron | 45.0% |
| !!! | CCCCTGGTAACTAGTTTTAC+TGG | + | tig0046255:1054-1073 | Msa1466230:intron | 45.0% |
| GACTAGTATTCGTGTCCTGT+TGG | - | tig0046255:1139-1158 | Msa1466230:intergenic | 45.0% | |
| CAGCACACATTCAAAACGGA+GGG | + | tig0046255:1481-1500 | Msa1466230:CDS | 45.0% | |
| CACATTCAAAACGGAGGGAA+AGG | + | tig0046255:1486-1505 | Msa1466230:CDS | 45.0% | |
| GAAAGGTCCGATGATGAAGA+CGG | + | tig0046255:1503-1522 | Msa1466230:CDS | 45.0% | |
| GAAGAAAAGGTGGAAAGAGG+AGG | + | tig0046255:1546-1565 | Msa1466230:CDS | 45.0% | |
| !! | GGCTGATATGATGGATGAAC+AGG | + | tig0046255:1616-1635 | Msa1466230:CDS | 45.0% |
| GATGGATGAACAGGAAATGG+AGG | + | tig0046255:1625-1644 | Msa1466230:CDS | 45.0% | |
| TGTTGACATGAACTCCAGAG+AGG | + | tig0046255:1655-1674 | Msa1466230:CDS | 45.0% | |
| TCCTCGTTCATCTGAGTTTG+GGG | - | tig0046255:1683-1702 | Msa1466230:intergenic | 45.0% | |
| CATCCTCGTTCATCTGAGTT+TGG | - | tig0046255:1685-1704 | Msa1466230:intergenic | 45.0% | |
| AACTCAGATGAACGAGGATG+AGG | + | tig0046255:1685-1704 | Msa1466230:CDS | 45.0% | |
| ! | ACTTGCTCGTCAGGTTGCAT+TGG | + | tig0046255:247-266 | Msa1466230:CDS | 50.0% |
| !! | TTGCATTGGCTGAGGAAGCA+CGG | + | tig0046255:261-280 | Msa1466230:CDS | 50.0% |
| CAATCCAGATGCTCAGTCCT+GGG | - | tig0046255:673-692 | Msa1466230:intergenic | 50.0% | |
| ACAATCCAGATGCTCAGTCC+TGG | - | tig0046255:674-693 | Msa1466230:intergenic | 50.0% | |
| ACATCCCTCACCTTACAAGC+CGG | + | tig0046255:840-859 | Msa1466230:intron | 50.0% | |
| !! | AAAGCCGGCTTGTAAGGTGA+GGG | - | tig0046255:847-866 | Msa1466230:intergenic | 50.0% |
| !! | TAAAGCCGGCTTGTAAGGTG+AGG | - | tig0046255:848-867 | Msa1466230:intergenic | 50.0% |
| AAACAAACCGATGGTTCCCC+TGG | + | tig0046255:1038-1057 | Msa1466230:intron | 50.0% | |
| CTAGTTACCAGGGGAACCAT+CGG | - | tig0046255:1048-1067 | Msa1466230:intergenic | 50.0% | |
| TCGTACGACACCGACACATA+TGG | - | tig0046255:1224-1243 | Msa1466230:intergenic | 50.0% | |
| GCTCTGACACTTCGTGTTGA+AGG | - | tig0046255:1267-1286 | Msa1466230:intergenic | 50.0% | |
| ! | ACGAAGTGTCAGAGCTGCAT+AGG | + | tig0046255:1272-1291 | Msa1466230:intron | 50.0% |
| GCAGCACACATTCAAAACGG+AGG | + | tig0046255:1480-1499 | Msa1466230:CDS | 50.0% | |
| AGTCCCACCGTCTTCATCAT+CGG | - | tig0046255:1513-1532 | Msa1466230:intergenic | 50.0% | |
| AGGTGGAAAGAGGAGGAAGA+AGG | + | tig0046255:1553-1572 | Msa1466230:CDS | 50.0% | |
| GAGGATGAGGAAAATCCCCA+CGG | + | tig0046255:1698-1717 | Msa1466230:CDS | 50.0% | |
| AGCTAATGCGAGAAGACCGT+GGG | - | tig0046255:1717-1736 | Msa1466230:intergenic | 50.0% | |
| TCTCGCATTAGCTGGACTTG+AGG | + | tig0046255:1724-1743 | Msa1466230:CDS | 50.0% | |
| ! | ACTTGCTCGTCAGGTTGCAT+TGG | + | tig0046255:247-266 | Msa1466230:CDS | 50.0% |
| !! | TTGCATTGGCTGAGGAAGCA+CGG | + | tig0046255:261-280 | Msa1466230:CDS | 50.0% |
| CAATCCAGATGCTCAGTCCT+GGG | - | tig0046255:673-692 | Msa1466230:intergenic | 50.0% | |
| ACAATCCAGATGCTCAGTCC+TGG | - | tig0046255:674-693 | Msa1466230:intergenic | 50.0% | |
| ACATCCCTCACCTTACAAGC+CGG | + | tig0046255:840-859 | Msa1466230:intron | 50.0% | |
| !! | AAAGCCGGCTTGTAAGGTGA+GGG | - | tig0046255:847-866 | Msa1466230:intergenic | 50.0% |
| !! | TAAAGCCGGCTTGTAAGGTG+AGG | - | tig0046255:848-867 | Msa1466230:intergenic | 50.0% |
| AAACAAACCGATGGTTCCCC+TGG | + | tig0046255:1038-1057 | Msa1466230:intron | 50.0% | |
| CTAGTTACCAGGGGAACCAT+CGG | - | tig0046255:1048-1067 | Msa1466230:intergenic | 50.0% | |
| TCGTACGACACCGACACATA+TGG | - | tig0046255:1224-1243 | Msa1466230:intergenic | 50.0% | |
| GCTCTGACACTTCGTGTTGA+AGG | - | tig0046255:1267-1286 | Msa1466230:intergenic | 50.0% | |
| ! | ACGAAGTGTCAGAGCTGCAT+AGG | + | tig0046255:1272-1291 | Msa1466230:intron | 50.0% |
| GCAGCACACATTCAAAACGG+AGG | + | tig0046255:1480-1499 | Msa1466230:CDS | 50.0% | |
| AGTCCCACCGTCTTCATCAT+CGG | - | tig0046255:1513-1532 | Msa1466230:intergenic | 50.0% | |
| AGGTGGAAAGAGGAGGAAGA+AGG | + | tig0046255:1553-1572 | Msa1466230:CDS | 50.0% | |
| GAGGATGAGGAAAATCCCCA+CGG | + | tig0046255:1698-1717 | Msa1466230:CDS | 50.0% | |
| AGCTAATGCGAGAAGACCGT+GGG | - | tig0046255:1717-1736 | Msa1466230:intergenic | 50.0% | |
| TCTCGCATTAGCTGGACTTG+AGG | + | tig0046255:1724-1743 | Msa1466230:CDS | 50.0% | |
| ! | GAGACAGGAACTTGCTCGTC+AGG | + | tig0046255:238-257 | Msa1466230:CDS | 55.0% |
| !! | TCGTCAGGTTGCATTGGCTG+AGG | + | tig0046255:253-272 | Msa1466230:CDS | 55.0% |
| AATGCCCAGGACTGAGCATC+TGG | + | tig0046255:666-685 | Msa1466230:intron | 55.0% | |
| !! | TGTCGGTGTCGTACGAGTGT+TGG | + | tig0046255:1228-1247 | Msa1466230:intron | 55.0% |
| AGGTCCGATGATGAAGACGG+TGG | + | tig0046255:1506-1525 | Msa1466230:CDS | 55.0% | |
| GGTCCGATGATGAAGACGGT+GGG | + | tig0046255:1507-1526 | Msa1466230:CDS | 55.0% | |
| GCCCCAAACTCAGATGAACG+AGG | + | tig0046255:1679-1698 | Msa1466230:CDS | 55.0% | |
| GCTAATGCGAGAAGACCGTG+GGG | - | tig0046255:1716-1735 | Msa1466230:intergenic | 55.0% | |
| CAGCTAATGCGAGAAGACCG+TGG | - | tig0046255:1718-1737 | Msa1466230:intergenic | 55.0% | |
| CACGGTCTTCTCGCATTAGC+TGG | + | tig0046255:1716-1735 | Msa1466230:CDS | 55.0% | |
| ! | GAGACAGGAACTTGCTCGTC+AGG | + | tig0046255:238-257 | Msa1466230:CDS | 55.0% |
| !! | TCGTCAGGTTGCATTGGCTG+AGG | + | tig0046255:253-272 | Msa1466230:CDS | 55.0% |
| AATGCCCAGGACTGAGCATC+TGG | + | tig0046255:666-685 | Msa1466230:intron | 55.0% | |
| !! | TGTCGGTGTCGTACGAGTGT+TGG | + | tig0046255:1228-1247 | Msa1466230:intron | 55.0% |
| AGGTCCGATGATGAAGACGG+TGG | + | tig0046255:1506-1525 | Msa1466230:CDS | 55.0% | |
| GGTCCGATGATGAAGACGGT+GGG | + | tig0046255:1507-1526 | Msa1466230:CDS | 55.0% | |
| GCCCCAAACTCAGATGAACG+AGG | + | tig0046255:1679-1698 | Msa1466230:CDS | 55.0% | |
| GCTAATGCGAGAAGACCGTG+GGG | - | tig0046255:1716-1735 | Msa1466230:intergenic | 55.0% | |
| CAGCTAATGCGAGAAGACCG+TGG | - | tig0046255:1718-1737 | Msa1466230:intergenic | 55.0% | |
| CACGGTCTTCTCGCATTAGC+TGG | + | tig0046255:1716-1735 | Msa1466230:CDS | 55.0% | |
| ! | CTGAGTTTGGGGCTCCTCTC+TGG | - | tig0046255:1672-1691 | Msa1466230:intergenic | 60.0% |
| ! | CTGAGTTTGGGGCTCCTCTC+TGG | - | tig0046255:1672-1691 | Msa1466230:intergenic | 60.0% |
| ! | GGCTGAGGAAGCACGGCGCA+AGG | + | tig0046255:268-287 | Msa1466230:CDS | 70.0% |
| ! | GGCTGAGGAAGCACGGCGCA+AGG | + | tig0046255:268-287 | Msa1466230:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0046255 | gene | 50 | 1766 | 50 | ID=Msa1466230;Name=Msa1466230 |
| tig0046255 | mRNA | 50 | 1766 | 50 | ID=Msa1466230-mRNA-1;Parent=Msa1466230;Name=Msa1466230-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.33|1|1|0.66|3|0|212 |
| tig0046255 | exon | 50 | 313 | 50 | ID=Msa1466230-mRNA-1:exon:25023;Parent=Msa1466230-mRNA-1 |
| tig0046255 | exon | 411 | 482 | 411 | ID=Msa1466230-mRNA-1:exon:25024;Parent=Msa1466230-mRNA-1 |
| tig0046255 | exon | 1467 | 1766 | 1467 | ID=Msa1466230-mRNA-1:exon:25025;Parent=Msa1466230-mRNA-1 |
| tig0046255 | CDS | 50 | 313 | 50 | ID=Msa1466230-mRNA-1:cds;Parent=Msa1466230-mRNA-1 |
| tig0046255 | CDS | 411 | 482 | 411 | ID=Msa1466230-mRNA-1:cds;Parent=Msa1466230-mRNA-1 |
| tig0046255 | CDS | 1467 | 1766 | 1467 | ID=Msa1466230-mRNA-1:cds;Parent=Msa1466230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
