Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466410 | XP_024637900.2 | 96.815 | 314 | 8 | 1 | 1 | 314 | 1 | 312 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466410 | sp|Q84P24|4CLL6_ARATH | 54.902 | 306 | 129 | 5 | 15 | 314 | 11 | 313 | 6.34e-103 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466410 | A0A396I7Z5 | 96.815 | 314 | 8 | 1 | 1 | 314 | 1 | 312 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1448840 | Msa1466410 | 0.804781 | 1.831735e-49 | -8.615850e-47 |
| Msa0608030 | Msa1466410 | 0.840459 | 8.586910e-58 | -8.615850e-47 |
| Msa0553940 | Msa1466410 | 0.825657 | 4.159720e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466410 | MtrunA17_Chr4g0039791 | 96.815 | 314 | 8 | 1 | 1 | 314 | 1 | 312 | 0.0 | 610 |
| Msa1466410 | MtrunA17_Chr5g0409771 | 78.457 | 311 | 61 | 2 | 4 | 314 | 2 | 306 | 1.03e-173 | 493 |
| Msa1466410 | MtrunA17_Chr5g0409791 | 76.780 | 323 | 58 | 3 | 4 | 314 | 2 | 319 | 8.25e-165 | 470 |
| Msa1466410 | MtrunA17_Chr8g0353341 | 40.667 | 300 | 162 | 5 | 26 | 313 | 17 | 312 | 1.85e-66 | 217 |
| Msa1466410 | MtrunA17_Chr1g0157431 | 40.136 | 294 | 166 | 4 | 26 | 313 | 20 | 309 | 5.87e-62 | 205 |
| Msa1466410 | MtrunA17_Chr1g0157401 | 40.136 | 294 | 166 | 4 | 26 | 313 | 20 | 309 | 1.50e-61 | 204 |
| Msa1466410 | MtrunA17_Chr1g0197391 | 40.199 | 301 | 156 | 9 | 26 | 313 | 27 | 316 | 2.34e-55 | 188 |
| Msa1466410 | MtrunA17_Chr4g0028411 | 39.726 | 292 | 161 | 7 | 31 | 314 | 10 | 294 | 5.27e-54 | 184 |
| Msa1466410 | MtrunA17_Chr1g0180541 | 36.027 | 297 | 179 | 5 | 24 | 313 | 4 | 296 | 2.55e-47 | 167 |
| Msa1466410 | MtrunA17_Chr2g0327341 | 36.082 | 291 | 168 | 6 | 31 | 313 | 10 | 290 | 1.06e-46 | 165 |
| Msa1466410 | MtrunA17_Chr1g0180551 | 35.216 | 301 | 176 | 7 | 26 | 313 | 75 | 369 | 1.46e-43 | 157 |
| Msa1466410 | MtrunA17_Chr3g0116251 | 33.725 | 255 | 151 | 5 | 64 | 314 | 68 | 308 | 2.66e-35 | 134 |
| Msa1466410 | MtrunA17_Chr3g0116271 | 34.510 | 255 | 152 | 6 | 64 | 314 | 67 | 310 | 1.13e-34 | 132 |
| Msa1466410 | MtrunA17_Chr4g0072561 | 33.333 | 255 | 157 | 7 | 65 | 313 | 50 | 297 | 2.02e-33 | 129 |
| Msa1466410 | MtrunA17_Chr3g0102411 | 28.231 | 294 | 193 | 5 | 26 | 313 | 8 | 289 | 3.37e-31 | 122 |
| Msa1466410 | MtrunA17_Chr4g0000461 | 31.560 | 282 | 182 | 7 | 35 | 314 | 18 | 290 | 8.48e-31 | 121 |
| Msa1466410 | MtrunA17_Chr5g0395431 | 32.540 | 252 | 163 | 4 | 65 | 313 | 88 | 335 | 4.31e-28 | 114 |
| Msa1466410 | MtrunA17_Chr1g0186071 | 32.114 | 246 | 137 | 7 | 65 | 302 | 74 | 297 | 1.46e-25 | 106 |
| Msa1466410 | MtrunA17_Chr2g0334121 | 32.530 | 166 | 106 | 3 | 64 | 224 | 44 | 208 | 5.60e-17 | 78.2 |
| Msa1466410 | MtrunA17_Chr6g0471921 | 32.400 | 250 | 134 | 9 | 74 | 307 | 32 | 262 | 9.53e-15 | 74.7 |
| Msa1466410 | MtrunA17_Chr5g0406681 | 26.877 | 253 | 160 | 9 | 75 | 313 | 73 | 314 | 1.13e-12 | 68.6 |
| Msa1466410 | MtrunA17_Chr5g0396331 | 27.668 | 253 | 159 | 9 | 75 | 313 | 41 | 283 | 3.32e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466410 | AT4G19010.1 | 54.902 | 306 | 129 | 5 | 15 | 314 | 11 | 313 | 6.45e-104 | 315 |
| Msa1466410 | AT1G20510.2 | 38.908 | 293 | 169 | 2 | 27 | 313 | 5 | 293 | 6.55e-64 | 209 |
| Msa1466410 | AT1G20510.3 | 38.908 | 293 | 169 | 2 | 27 | 313 | 5 | 293 | 6.84e-64 | 209 |
| Msa1466410 | AT1G20510.1 | 38.908 | 293 | 169 | 2 | 27 | 313 | 5 | 293 | 2.60e-63 | 209 |
| Msa1466410 | AT1G20490.2 | 38.206 | 301 | 167 | 7 | 21 | 313 | 12 | 301 | 2.68e-58 | 194 |
| Msa1466410 | AT1G20490.1 | 38.206 | 301 | 167 | 7 | 21 | 313 | 12 | 301 | 2.68e-58 | 194 |
| Msa1466410 | AT1G20500.1 | 36.877 | 301 | 169 | 6 | 21 | 313 | 12 | 299 | 1.54e-54 | 186 |
| Msa1466410 | AT1G20480.1 | 35.235 | 298 | 173 | 6 | 26 | 313 | 27 | 314 | 5.28e-53 | 182 |
| Msa1466410 | AT4G05160.1 | 35.811 | 296 | 173 | 5 | 29 | 314 | 8 | 296 | 1.10e-48 | 171 |
| Msa1466410 | AT5G38120.4 | 35.880 | 301 | 168 | 7 | 21 | 310 | 13 | 299 | 1.09e-47 | 167 |
| Msa1466410 | AT5G38120.2 | 35.880 | 301 | 168 | 7 | 21 | 310 | 13 | 299 | 1.09e-47 | 167 |
| Msa1466410 | AT5G38120.3 | 35.880 | 301 | 168 | 7 | 21 | 310 | 13 | 299 | 3.19e-47 | 166 |
| Msa1466410 | AT5G38120.1 | 35.880 | 301 | 168 | 7 | 21 | 310 | 13 | 299 | 5.52e-47 | 166 |
| Msa1466410 | AT5G63380.1 | 32.343 | 303 | 180 | 6 | 26 | 313 | 17 | 309 | 2.93e-36 | 137 |
| Msa1466410 | AT1G51680.2 | 32.946 | 258 | 161 | 3 | 65 | 314 | 57 | 310 | 1.17e-32 | 126 |
| Msa1466410 | AT1G65060.2 | 32.432 | 296 | 184 | 7 | 21 | 313 | 30 | 312 | 1.22e-32 | 126 |
| Msa1466410 | AT1G51680.3 | 32.946 | 258 | 161 | 3 | 65 | 314 | 57 | 310 | 1.83e-32 | 126 |
| Msa1466410 | AT1G65060.1 | 32.432 | 296 | 184 | 7 | 21 | 313 | 30 | 312 | 2.15e-32 | 126 |
| Msa1466410 | AT1G51680.1 | 32.946 | 258 | 161 | 3 | 65 | 314 | 57 | 310 | 3.62e-32 | 125 |
| Msa1466410 | AT3G21240.2 | 31.429 | 315 | 191 | 9 | 11 | 313 | 1 | 302 | 7.52e-32 | 124 |
| Msa1466410 | AT3G21240.3 | 31.429 | 315 | 191 | 9 | 11 | 313 | 1 | 302 | 7.52e-32 | 124 |
| Msa1466410 | AT3G21240.1 | 31.329 | 316 | 192 | 9 | 11 | 314 | 1 | 303 | 1.42e-31 | 124 |
| Msa1466410 | AT3G21230.4 | 31.298 | 262 | 171 | 3 | 46 | 299 | 43 | 303 | 9.66e-31 | 120 |
| Msa1466410 | AT3G21230.2 | 29.900 | 301 | 196 | 5 | 7 | 299 | 10 | 303 | 1.94e-30 | 120 |
| Msa1466410 | AT3G21230.3 | 29.900 | 301 | 196 | 5 | 7 | 299 | 10 | 303 | 3.09e-30 | 120 |
| Msa1466410 | AT3G21230.1 | 29.900 | 301 | 196 | 5 | 7 | 299 | 10 | 303 | 3.63e-30 | 120 |
| Msa1466410 | AT1G62940.1 | 30.830 | 253 | 158 | 6 | 63 | 310 | 43 | 283 | 4.24e-29 | 117 |
| Msa1466410 | AT5G16370.1 | 30.328 | 244 | 146 | 9 | 86 | 312 | 53 | 289 | 2.10e-16 | 80.1 |
| Msa1466410 | AT5G16340.1 | 30.488 | 246 | 143 | 9 | 86 | 312 | 53 | 289 | 1.18e-13 | 71.6 |
| Msa1466410 | AT1G21530.1 | 39.806 | 103 | 54 | 3 | 212 | 313 | 191 | 286 | 5.06e-13 | 69.7 |
| Msa1466410 | AT1G21530.2 | 39.806 | 103 | 54 | 3 | 212 | 313 | 191 | 286 | 5.07e-13 | 69.7 |
| Msa1466410 | AT1G64400.1 | 25.385 | 260 | 163 | 8 | 32 | 264 | 27 | 282 | 7.35e-13 | 69.7 |
| Msa1466410 | AT1G77240.1 | 27.203 | 261 | 156 | 11 | 73 | 314 | 43 | 288 | 1.47e-12 | 68.6 |
| Msa1466410 | AT1G65890.1 | 27.347 | 245 | 153 | 10 | 86 | 313 | 52 | 288 | 4.42e-12 | 67.0 |
| Msa1466410 | AT1G65880.1 | 26.721 | 247 | 152 | 9 | 86 | 313 | 52 | 288 | 9.79e-12 | 65.9 |
Find 0 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTTTTAACCTTCTTTA+TGG | - | tig0046876:555-574 | Msa1466410:CDS | 20.0% |
| !! | AATCAAATTTACCATAAAGA+AGG | + | tig0046876:569-588 | Msa1466410:intergenic | 20.0% |
| !!! | TCATAGAAATCTTATTTCTA+TGG | - | tig0046876:680-699 | Msa1466410:CDS | 20.0% |
| !!! | AGTTTTTTTAACCTTCTTTA+TGG | - | tig0046876:555-574 | Msa1466410:CDS | 20.0% |
| !! | AATCAAATTTACCATAAAGA+AGG | + | tig0046876:569-588 | Msa1466410:intergenic | 20.0% |
| !!! | TCATAGAAATCTTATTTCTA+TGG | - | tig0046876:680-699 | Msa1466410:CDS | 20.0% |
| !! | TTTTTGATGAATACCAATGA+GGG | + | tig0046876:71-90 | Msa1466410:intergenic | 25.0% |
| ! | AAGAAACAATGTCAAGAAAA+GGG | + | tig0046876:140-159 | Msa1466410:intergenic | 25.0% |
| ! | AAAGAAACAATGTCAAGAAA+AGG | + | tig0046876:141-160 | Msa1466410:intergenic | 25.0% |
| ! | TAACAACTTTGAGTAAGAAA+TGG | + | tig0046876:223-242 | Msa1466410:intergenic | 25.0% |
| ! | ACAGGGTAATAAATTGAATT+TGG | + | tig0046876:321-340 | Msa1466410:intergenic | 25.0% |
| !!! | TAAATTTGATTTGCCTCAAA+GGG | - | tig0046876:578-597 | Msa1466410:CDS | 25.0% |
| !! | TTTTTGATGAATACCAATGA+GGG | + | tig0046876:71-90 | Msa1466410:intergenic | 25.0% |
| ! | AAGAAACAATGTCAAGAAAA+GGG | + | tig0046876:140-159 | Msa1466410:intergenic | 25.0% |
| ! | AAAGAAACAATGTCAAGAAA+AGG | + | tig0046876:141-160 | Msa1466410:intergenic | 25.0% |
| ! | TAACAACTTTGAGTAAGAAA+TGG | + | tig0046876:223-242 | Msa1466410:intergenic | 25.0% |
| ! | ACAGGGTAATAAATTGAATT+TGG | + | tig0046876:321-340 | Msa1466410:intergenic | 25.0% |
| !!! | TAAATTTGATTTGCCTCAAA+GGG | - | tig0046876:578-597 | Msa1466410:CDS | 25.0% |
| !!! | TTGAGTGATCATGTTGTTTT+GGG | + | tig0046876:40-59 | None:intergenic | 30.0% |
| ! | GTTTTTGATGAATACCAATG+AGG | + | tig0046876:72-91 | Msa1466410:intergenic | 30.0% |
| CATTGGTATTCATCAAAAAC+TGG | - | tig0046876:72-91 | Msa1466410:CDS | 30.0% | |
| TTATTACCCTGTTATACTCT+TGG | - | tig0046876:329-348 | Msa1466410:CDS | 30.0% | |
| !! | TCTAGTTTCTTGACATTTTC+AGG | + | tig0046876:462-481 | Msa1466410:intergenic | 30.0% |
| !! | GTAAATTTGATTTGCCTCAA+AGG | - | tig0046876:577-596 | Msa1466410:CDS | 30.0% |
| TGTTTAATAACTACCCTTTG+AGG | + | tig0046876:594-613 | Msa1466410:intergenic | 30.0% | |
| TCAAAGGGTAGTTATTAAAC+AGG | - | tig0046876:593-612 | Msa1466410:CDS | 30.0% | |
| CTGGTATATTGTATTCATCT+GGG | - | tig0046876:625-644 | Msa1466410:CDS | 30.0% | |
| AAACCATACACATGAAACAT+TGG | + | tig0046876:780-799 | Msa1466410:intergenic | 30.0% | |
| !!! | TTGAGTGATCATGTTGTTTT+GGG | + | tig0046876:40-59 | Msa1466410:intergenic | 30.0% |
| ! | GTTTTTGATGAATACCAATG+AGG | + | tig0046876:72-91 | Msa1466410:intergenic | 30.0% |
| CATTGGTATTCATCAAAAAC+TGG | - | tig0046876:72-91 | Msa1466410:CDS | 30.0% | |
| TTATTACCCTGTTATACTCT+TGG | - | tig0046876:329-348 | Msa1466410:CDS | 30.0% | |
| !! | TCTAGTTTCTTGACATTTTC+AGG | + | tig0046876:462-481 | Msa1466410:intergenic | 30.0% |
| !! | GTAAATTTGATTTGCCTCAA+AGG | - | tig0046876:577-596 | Msa1466410:CDS | 30.0% |
| TGTTTAATAACTACCCTTTG+AGG | + | tig0046876:594-613 | Msa1466410:intergenic | 30.0% | |
| TCAAAGGGTAGTTATTAAAC+AGG | - | tig0046876:593-612 | Msa1466410:CDS | 30.0% | |
| CTGGTATATTGTATTCATCT+GGG | - | tig0046876:625-644 | Msa1466410:CDS | 30.0% | |
| AAACCATACACATGAAACAT+TGG | + | tig0046876:780-799 | Msa1466410:intergenic | 30.0% | |
| !! | GTTGAGTGATCATGTTGTTT+TGG | + | tig0046876:41-60 | None:intergenic | 35.0% |
| !!! | ATTTTTTCACACCCTCATGA+TGG | - | tig0046876:162-181 | Msa1466410:CDS | 35.0% |
| !!! | TTTTTTCACACCCTCATGAT+GGG | - | tig0046876:163-182 | Msa1466410:CDS | 35.0% |
| CCCAGATGAAGAATCAATAA+GGG | + | tig0046876:196-215 | Msa1466410:intergenic | 35.0% | |
| !! | CCCTTATTGATTCTTCATCT+GGG | - | tig0046876:193-212 | Msa1466410:CDS | 35.0% |
| ACCCAGATGAAGAATCAATA+AGG | + | tig0046876:197-216 | Msa1466410:intergenic | 35.0% | |
| GTTACCTTTAGTCAAATCCA+TGG | - | tig0046876:239-258 | Msa1466410:CDS | 35.0% | |
| GCTTCTGCTTTACACAAAAT+GGG | - | tig0046876:261-280 | Msa1466410:CDS | 35.0% | |
| ACACTACTAAGAGGATTCAA+TGG | + | tig0046876:384-403 | Msa1466410:intergenic | 35.0% | |
| TTGAATCCTCTTAGTAGTGT+TGG | - | tig0046876:384-403 | Msa1466410:CDS | 35.0% | |
| ATTTCACCAACACTACTAAG+AGG | + | tig0046876:393-412 | Msa1466410:intergenic | 35.0% | |
| ! | TGTTGGTGAAATTCGTAAAC+AGG | - | tig0046876:401-420 | Msa1466410:CDS | 35.0% |
| GTCAAGAAACTAGAGCTATT+AGG | - | tig0046876:468-487 | Msa1466410:CDS | 35.0% | |
| AAGAAACTAGAGCTATTAGG+TGG | - | tig0046876:471-490 | Msa1466410:CDS | 35.0% | |
| !! | TTTTCTGGCACAGCAATAAT+GGG | + | tig0046876:504-523 | Msa1466410:intergenic | 35.0% |
| !! | ATTTTCTGGCACAGCAATAA+TGG | + | tig0046876:505-524 | Msa1466410:intergenic | 35.0% |
| ! | CTCAAATCCTTCTCATTTTC+TGG | + | tig0046876:519-538 | Msa1466410:intergenic | 35.0% |
| CAGAAAATGAGAAGGATTTG+AGG | - | tig0046876:517-536 | Msa1466410:CDS | 35.0% | |
| ATTAAACAGGAAGATACTGC+TGG | - | tig0046876:606-625 | Msa1466410:CDS | 35.0% | |
| GCTGGTATATTGTATTCATC+TGG | - | tig0046876:624-643 | Msa1466410:CDS | 35.0% | |
| TTGCCAATGTTTCATGTGTA+TGG | - | tig0046876:774-793 | Msa1466410:CDS | 35.0% | |
| !! | GTTGAGTGATCATGTTGTTT+TGG | + | tig0046876:41-60 | Msa1466410:intergenic | 35.0% |
| !!! | ATTTTTTCACACCCTCATGA+TGG | - | tig0046876:162-181 | Msa1466410:CDS | 35.0% |
| !!! | TTTTTTCACACCCTCATGAT+GGG | - | tig0046876:163-182 | Msa1466410:CDS | 35.0% |
| CCCAGATGAAGAATCAATAA+GGG | + | tig0046876:196-215 | Msa1466410:intergenic | 35.0% | |
| !! | CCCTTATTGATTCTTCATCT+GGG | - | tig0046876:193-212 | Msa1466410:CDS | 35.0% |
| ACCCAGATGAAGAATCAATA+AGG | + | tig0046876:197-216 | Msa1466410:intergenic | 35.0% | |
| GTTACCTTTAGTCAAATCCA+TGG | - | tig0046876:239-258 | Msa1466410:CDS | 35.0% | |
| GCTTCTGCTTTACACAAAAT+GGG | - | tig0046876:261-280 | Msa1466410:CDS | 35.0% | |
| ACACTACTAAGAGGATTCAA+TGG | + | tig0046876:384-403 | Msa1466410:intergenic | 35.0% | |
| TTGAATCCTCTTAGTAGTGT+TGG | - | tig0046876:384-403 | Msa1466410:CDS | 35.0% | |
| ATTTCACCAACACTACTAAG+AGG | + | tig0046876:393-412 | Msa1466410:intergenic | 35.0% | |
| ! | TGTTGGTGAAATTCGTAAAC+AGG | - | tig0046876:401-420 | Msa1466410:CDS | 35.0% |
| GTCAAGAAACTAGAGCTATT+AGG | - | tig0046876:468-487 | Msa1466410:CDS | 35.0% | |
| AAGAAACTAGAGCTATTAGG+TGG | - | tig0046876:471-490 | Msa1466410:CDS | 35.0% | |
| !! | TTTTCTGGCACAGCAATAAT+GGG | + | tig0046876:504-523 | Msa1466410:intergenic | 35.0% |
| !! | ATTTTCTGGCACAGCAATAA+TGG | + | tig0046876:505-524 | Msa1466410:intergenic | 35.0% |
| ! | CTCAAATCCTTCTCATTTTC+TGG | + | tig0046876:519-538 | Msa1466410:intergenic | 35.0% |
| CAGAAAATGAGAAGGATTTG+AGG | - | tig0046876:517-536 | Msa1466410:CDS | 35.0% | |
| ATTAAACAGGAAGATACTGC+TGG | - | tig0046876:606-625 | Msa1466410:CDS | 35.0% | |
| GCTGGTATATTGTATTCATC+TGG | - | tig0046876:624-643 | Msa1466410:CDS | 35.0% | |
| TTGCCAATGTTTCATGTGTA+TGG | - | tig0046876:774-793 | Msa1466410:CDS | 35.0% | |
| ATGAATACCAATGAGGGTGA+GGG | + | tig0046876:65-84 | Msa1466410:intergenic | 40.0% | |
| ATGTCAAGAAAAGGGTCAGT+TGG | + | tig0046876:132-151 | Msa1466410:intergenic | 40.0% | |
| ! | TTTTTCACACCCTCATGATG+GGG | - | tig0046876:164-183 | Msa1466410:CDS | 40.0% |
| !! | GCCCTTATTGATTCTTCATC+TGG | - | tig0046876:192-211 | Msa1466410:CDS | 40.0% |
| GAAGCCATGGATTTGACTAA+AGG | + | tig0046876:246-265 | Msa1466410:intergenic | 40.0% | |
| TTTGTGTAAAGCAGAAGCCA+TGG | + | tig0046876:259-278 | Msa1466410:intergenic | 40.0% | |
| GGCTTCTGCTTTACACAAAA+TGG | - | tig0046876:260-279 | Msa1466410:CDS | 40.0% | |
| CACAAAATGGGTGTTTCACA+AGG | - | tig0046876:273-292 | Msa1466410:CDS | 40.0% | |
| ! | GAACAGCCAAGAGTATAACA+GGG | + | tig0046876:338-357 | Msa1466410:intergenic | 40.0% |
| ! | AGAACAGCCAAGAGTATAAC+AGG | + | tig0046876:339-358 | Msa1466410:intergenic | 40.0% |
| CTCTTGGCTGTTCTGTATTT+AGG | - | tig0046876:345-364 | Msa1466410:CDS | 40.0% | |
| ! | TTGTATTCATCTGGGACTAC+AGG | - | tig0046876:633-652 | Msa1466410:CDS | 40.0% |
| AACAGCTAGAAACACACTCT+TGG | + | tig0046876:754-773 | Msa1466410:intergenic | 40.0% | |
| ATTATTGTCGTTGGGCTCTA+CGG | - | tig0046876:818-837 | Msa1466410:CDS | 40.0% | |
| GAGGAAATTTGACATTGACG+AGG | - | tig0046876:851-870 | Msa1466410:CDS | 40.0% | |
| TTGACATTGACGAGGTTATC+AGG | - | tig0046876:859-878 | Msa1466410:CDS | 40.0% | |
| TGACATTGACGAGGTTATCA+GGG | - | tig0046876:860-879 | Msa1466410:CDS | 40.0% | |
| ATGAATACCAATGAGGGTGA+GGG | + | tig0046876:65-84 | Msa1466410:intergenic | 40.0% | |
| ATGTCAAGAAAAGGGTCAGT+TGG | + | tig0046876:132-151 | Msa1466410:intergenic | 40.0% | |
| ! | TTTTTCACACCCTCATGATG+GGG | - | tig0046876:164-183 | Msa1466410:CDS | 40.0% |
| !! | GCCCTTATTGATTCTTCATC+TGG | - | tig0046876:192-211 | Msa1466410:CDS | 40.0% |
| GAAGCCATGGATTTGACTAA+AGG | + | tig0046876:246-265 | Msa1466410:intergenic | 40.0% | |
| TTTGTGTAAAGCAGAAGCCA+TGG | + | tig0046876:259-278 | Msa1466410:intergenic | 40.0% | |
| GGCTTCTGCTTTACACAAAA+TGG | - | tig0046876:260-279 | Msa1466410:CDS | 40.0% | |
| CACAAAATGGGTGTTTCACA+AGG | - | tig0046876:273-292 | Msa1466410:CDS | 40.0% | |
| ! | GAACAGCCAAGAGTATAACA+GGG | + | tig0046876:338-357 | Msa1466410:intergenic | 40.0% |
| ! | AGAACAGCCAAGAGTATAAC+AGG | + | tig0046876:339-358 | Msa1466410:intergenic | 40.0% |
| CTCTTGGCTGTTCTGTATTT+AGG | - | tig0046876:345-364 | Msa1466410:CDS | 40.0% | |
| ! | TTGTATTCATCTGGGACTAC+AGG | - | tig0046876:633-652 | Msa1466410:CDS | 40.0% |
| AACAGCTAGAAACACACTCT+TGG | + | tig0046876:754-773 | Msa1466410:intergenic | 40.0% | |
| ATTATTGTCGTTGGGCTCTA+CGG | - | tig0046876:818-837 | Msa1466410:CDS | 40.0% | |
| GAGGAAATTTGACATTGACG+AGG | - | tig0046876:851-870 | Msa1466410:CDS | 40.0% | |
| TTGACATTGACGAGGTTATC+AGG | - | tig0046876:859-878 | Msa1466410:CDS | 40.0% | |
| TGACATTGACGAGGTTATCA+GGG | - | tig0046876:860-879 | Msa1466410:CDS | 40.0% | |
| GATGAATACCAATGAGGGTG+AGG | + | tig0046876:66-85 | Msa1466410:intergenic | 45.0% | |
| CAAGAAAAGGGTCAGTTGGA+AGG | + | tig0046876:128-147 | Msa1466410:intergenic | 45.0% | |
| CGTAAACAGGTTCAAGAGTG+TGG | - | tig0046876:414-433 | Msa1466410:CDS | 45.0% | |
| TGCTGTGCCAGAAAATGAGA+AGG | - | tig0046876:509-528 | Msa1466410:CDS | 45.0% | |
| TGGTTTATCGCTCTTTGCTG+CGG | - | tig0046876:794-813 | Msa1466410:CDS | 45.0% | |
| TGTTGTTCCACCGATGTTGT+CGG | - | tig0046876:914-933 | Msa1466410:CDS | 45.0% | |
| GATGAATACCAATGAGGGTG+AGG | + | tig0046876:66-85 | Msa1466410:intergenic | 45.0% | |
| CAAGAAAAGGGTCAGTTGGA+AGG | + | tig0046876:128-147 | Msa1466410:intergenic | 45.0% | |
| CGTAAACAGGTTCAAGAGTG+TGG | - | tig0046876:414-433 | Msa1466410:CDS | 45.0% | |
| TGCTGTGCCAGAAAATGAGA+AGG | - | tig0046876:509-528 | Msa1466410:CDS | 45.0% | |
| TGGTTTATCGCTCTTTGCTG+CGG | - | tig0046876:794-813 | Msa1466410:CDS | 45.0% | |
| TGTTGTTCCACCGATGTTGT+CGG | - | tig0046876:914-933 | Msa1466410:CDS | 45.0% | |
| GGGTCAGTTGGAAGGTTTCT+AGG | + | tig0046876:120-139 | Msa1466410:intergenic | 50.0% | |
| GGGCTAAAACCCCATCATGA+GGG | + | tig0046876:176-195 | Msa1466410:intergenic | 50.0% | |
| AGGGCTAAAACCCCATCATG+AGG | + | tig0046876:177-196 | Msa1466410:intergenic | 50.0% | |
| GGGACTACAGGTGTGAGTAA+AGG | - | tig0046876:645-664 | Msa1466410:CDS | 50.0% | |
| GGTTTATCGCTCTTTGCTGC+GGG | - | tig0046876:795-814 | Msa1466410:CDS | 50.0% | |
| TGCTGCGGGATTATTGTCGT+TGG | - | tig0046876:809-828 | Msa1466410:CDS | 50.0% | |
| GCTGCGGGATTATTGTCGTT+GGG | - | tig0046876:810-829 | Msa1466410:CDS | 50.0% | |
| GCTCTACGGTCATTGTAACG+AGG | - | tig0046876:832-851 | Msa1466410:CDS | 50.0% | |
| GACAACATCGGTGGAACAAC+AGG | + | tig0046876:915-934 | Msa1466410:intergenic | 50.0% | |
| GGGTCAGTTGGAAGGTTTCT+AGG | + | tig0046876:120-139 | Msa1466410:intergenic | 50.0% | |
| GGGCTAAAACCCCATCATGA+GGG | + | tig0046876:176-195 | Msa1466410:intergenic | 50.0% | |
| AGGGCTAAAACCCCATCATG+AGG | + | tig0046876:177-196 | Msa1466410:intergenic | 50.0% | |
| GGGACTACAGGTGTGAGTAA+AGG | - | tig0046876:645-664 | Msa1466410:CDS | 50.0% | |
| GGTTTATCGCTCTTTGCTGC+GGG | - | tig0046876:795-814 | Msa1466410:CDS | 50.0% | |
| TGCTGCGGGATTATTGTCGT+TGG | - | tig0046876:809-828 | Msa1466410:CDS | 50.0% | |
| GCTGCGGGATTATTGTCGTT+GGG | - | tig0046876:810-829 | Msa1466410:CDS | 50.0% | |
| GCTCTACGGTCATTGTAACG+AGG | - | tig0046876:832-851 | Msa1466410:CDS | 50.0% | |
| GACAACATCGGTGGAACAAC+AGG | + | tig0046876:915-934 | Msa1466410:intergenic | 50.0% | |
| CTCAACACCCTCACCCTCAT+TGG | - | tig0046876:55-74 | Msa1466410:CDS | 55.0% | |
| GTCAATGCCGACAACATCGG+TGG | + | tig0046876:924-943 | Msa1466410:intergenic | 55.0% | |
| CTCAACACCCTCACCCTCAT+TGG | - | tig0046876:55-74 | Msa1466410:CDS | 55.0% | |
| GTCAATGCCGACAACATCGG+TGG | + | tig0046876:924-943 | Msa1466410:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0046876 | gene | 3 | 944 | 3 | ID=Msa1466410;Name=Msa1466410 |
| tig0046876 | mRNA | 3 | 944 | 3 | ID=Msa1466410-mRNA-1;Parent=Msa1466410;Name=Msa1466410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|314 |
| tig0046876 | exon | 3 | 944 | 3 | ID=Msa1466410-mRNA-1:exon:25067;Parent=Msa1466410-mRNA-1 |
| tig0046876 | CDS | 3 | 944 | 3 | ID=Msa1466410-mRNA-1:cds;Parent=Msa1466410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
