AlfalfaGEDB | Msa1466470

M. sativa cultivar zhongmu-4 / Msa1466470

KEGG: K08494
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466470	XP_013457561.1	97.727	44	1	0	1	44	88	131	5.17e-20	90.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466470	sp\|Q944A9\|NPS11_ARATH	68.889	45	12	1	1	43	88	132	1.36e-12	63.2

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466470	A0A072UPG8	97.727	44	1	0	1	44	88	131	2.47e-20	90.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0498450	Msa1466470	0.803690	3.090510e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466470	MtrunA17_Chr4g0055321	97.727	44	1	0	1	44	88	131	4.76e-24	90.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1466470	AT2G35190.1	68.889	45	12	1	1	43	88	132	1.39e-13	63.2

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Find 9 sgRNAs with CRISPR-Local

Find 20 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCGAATTGAACTCTTTGA+GGG	0.501546	tig0047256:-270	Msa1466470:CDS
CTAGCTTCCGGTAAGTATGC+TGG	0.468974	tig0047256:-213	Msa1466470:CDS
CTCTTTGAGGGACCCAATGA+AGG	0.509954	tig0047256:-258	Msa1466470:CDS
GAAAATGTCTTGCTAGCTTC+CGG	0.447441	tig0047256:-225	Msa1466470:CDS
GAAGAAGCCAGCATACTTAC+CGG	0.418150	tig0047256:+206	Msa1466470:intergenic
TAAAGAAGTCAAAGCTTTAG+AGG	0.333294	tig0047256:-670	Msa1466470:five_prime_UTR
TAAGCGAATTGAACTCTTTG+AGG	0.435458	tig0047256:-271	Msa1466470:CDS
TCTTCTGTGTCGCCTTCATT+GGG	0.414766	tig0047256:+246	Msa1466470:intergenic
TTCTTCTGTGTCGCCTTCAT+TGG	0.242708	tig0047256:+245	Msa1466470:intergenic

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CRISPR-GE

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badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
	CATGAAGTAGCAAAATTAAG+GGG	+	tig0047256:303-322	Msa1466470:intergenic	30.0%
	GAACAAAATGAGAGATTCTA+AGG	+	tig0047256:464-483	Msa1466470:intergenic	30.0%
	GAATGAGAAAAAGCAGTCAA+TGG	-	tig0047256:227-246	Msa1466470:CDS	35.0%
	TAAGCGAATTGAACTCTTTG+AGG	-	tig0047256:572-591	Msa1466470:intron	35.0%
	AAGCGAATTGAACTCTTTGA+GGG	-	tig0047256:573-592	Msa1466470:intron	35.0%
	TCTTCTGTGTCGCCTTCATT+GGG	+	tig0047256:600-619	Msa1466470:intergenic	45.0%
	TTCTTCTGTGTCGCCTTCAT+TGG	+	tig0047256:601-620	Msa1466470:intergenic	45.0%
	GAAGAAGCCAGCATACTTAC+CGG	+	tig0047256:640-659	Msa1466470:intergenic	45.0%
	CTAGCTTCCGGTAAGTATGC+TGG	-	tig0047256:630-649	Msa1466470:five_prime_UTR	50.0%
!	ACATGAAGTAGCAAAATTAA+GGG	+	tig0047256:304-323	Msa1466470:intergenic	25.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0047256	gene	158	707	158	ID=Msa1466470;Name=Msa1466470
tig0047256	mRNA	158	707	158	ID=Msa1466470-mRNA-1;Parent=Msa1466470;Name=Msa1466470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=88\|1\|1\|1\|1\|1\|3\|0\|66
tig0047256	exon	158	314	158	ID=Msa1466470-mRNA-1:exon:25079;Parent=Msa1466470-mRNA-1
tig0047256	exon	429	466	429	ID=Msa1466470-mRNA-1:exon:25078;Parent=Msa1466470-mRNA-1
tig0047256	exon	617	707	617	ID=Msa1466470-mRNA-1:exon:25077;Parent=Msa1466470-mRNA-1
tig0047256	five_prime_UTR	620	707	620	ID=Msa1466470-mRNA-1:five_prime_utr;Parent=Msa1466470-mRNA-1
tig0047256	CDS	617	619	617	ID=Msa1466470-mRNA-1:cds;Parent=Msa1466470-mRNA-1
tig0047256	CDS	429	466	429	ID=Msa1466470-mRNA-1:cds;Parent=Msa1466470-mRNA-1
tig0047256	CDS	158	314	158	ID=Msa1466470-mRNA-1:cds;Parent=Msa1466470-mRNA-1

Gene Sequence	>Msa1466470 ATGATCAAAGAATTGAATTCATATGTTGCTTTGAAAAAACAATACGCTTCAAATATTGAGAATAAGCGAATTGAACTCTTTGAGGGACCCAATGAAGGCGACACAGAAGAAAATGTCTTGCTAGCTTCCGGTAAGTATGCTGGCTTCTTCATATCGATTATGCTAATGTTTATGTGTCGCAACATGTTTTCAGTAGTC
Protein sequence	>Msa1466470 MIKELNSYVALKKQYASNIENKRIELFEGPNEGDTEENVLLASGKYAGFFISIMLMFMCRNMFSVV