Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466640 | RHN49322.1 | 81.720 | 93 | 1 | 1 | 1 | 77 | 89 | 181 | 6.49e-41 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466640 | sp|Q3ECP7|ERDL5_ARATH | 70.213 | 94 | 10 | 1 | 1 | 76 | 315 | 408 | 4.59e-34 | 123 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466640 | A0A396H7U6 | 81.720 | 93 | 1 | 1 | 1 | 77 | 89 | 181 | 3.10e-41 | 144 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1128780 | Msa1466640 | 0.803080 | 4.134414e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466640 | MtrunA17_Chr7g0273261 | 81.720 | 93 | 1 | 1 | 1 | 77 | 89 | 181 | 5.97e-45 | 144 |
| Msa1466640 | MtrunA17_Chr7g0273281 | 68.421 | 95 | 12 | 1 | 1 | 77 | 345 | 439 | 7.33e-35 | 123 |
| Msa1466640 | MtrunA17_Chr4g0066581 | 53.191 | 94 | 26 | 1 | 2 | 77 | 337 | 430 | 7.51e-26 | 98.2 |
| Msa1466640 | MtrunA17_Chr2g0286721 | 50.538 | 93 | 28 | 1 | 2 | 76 | 334 | 426 | 8.45e-25 | 95.5 |
| Msa1466640 | MtrunA17_Chr7g0259221 | 46.316 | 95 | 33 | 1 | 1 | 77 | 325 | 419 | 8.10e-24 | 92.4 |
| Msa1466640 | MtrunA17_Chr7g0259471 | 46.316 | 95 | 33 | 1 | 1 | 77 | 323 | 417 | 2.99e-23 | 90.9 |
| Msa1466640 | MtrunA17_Chr1g0155221 | 44.444 | 99 | 32 | 1 | 2 | 77 | 334 | 432 | 2.94e-18 | 77.0 |
| Msa1466640 | MtrunA17_Chr8g0373191 | 41.414 | 99 | 36 | 2 | 1 | 77 | 303 | 401 | 6.62e-15 | 67.4 |
| Msa1466640 | MtrunA17_Chr7g0221631 | 71.053 | 38 | 11 | 0 | 40 | 77 | 57 | 94 | 1.58e-14 | 63.2 |
| Msa1466640 | MtrunA17_Chr8g0373181 | 39.796 | 98 | 37 | 1 | 2 | 77 | 332 | 429 | 6.06e-14 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466640 | AT1G54730.3 | 70.213 | 94 | 10 | 1 | 1 | 76 | 315 | 408 | 3.61e-35 | 123 |
| Msa1466640 | AT1G54730.2 | 70.213 | 94 | 10 | 1 | 1 | 76 | 315 | 408 | 4.66e-35 | 123 |
| Msa1466640 | AT1G54730.9 | 65.854 | 82 | 10 | 1 | 1 | 64 | 315 | 396 | 1.20e-26 | 100 |
| Msa1466640 | AT1G54730.7 | 65.854 | 82 | 10 | 1 | 1 | 64 | 315 | 396 | 1.20e-26 | 100 |
| Msa1466640 | AT5G18840.1 | 52.632 | 95 | 27 | 1 | 1 | 77 | 328 | 422 | 3.96e-24 | 94.0 |
| Msa1466640 | AT2G48020.2 | 46.316 | 95 | 33 | 1 | 1 | 77 | 311 | 405 | 3.63e-23 | 91.3 |
| Msa1466640 | AT2G48020.1 | 46.316 | 95 | 33 | 1 | 1 | 77 | 311 | 405 | 3.63e-23 | 91.3 |
| Msa1466640 | AT3G05150.1 | 52.083 | 96 | 27 | 2 | 1 | 77 | 318 | 413 | 8.98e-23 | 90.1 |
| Msa1466640 | AT3G05150.3 | 52.083 | 96 | 27 | 2 | 1 | 77 | 318 | 413 | 8.98e-23 | 90.1 |
| Msa1466640 | AT3G05150.2 | 52.083 | 96 | 27 | 2 | 1 | 77 | 318 | 413 | 9.22e-23 | 90.1 |
| Msa1466640 | AT1G54730.4 | 65.333 | 75 | 8 | 1 | 20 | 76 | 313 | 387 | 9.32e-23 | 89.7 |
| Msa1466640 | AT1G54730.5 | 65.333 | 75 | 8 | 1 | 20 | 76 | 313 | 387 | 1.03e-22 | 89.7 |
| Msa1466640 | AT5G27360.2 | 48.352 | 91 | 29 | 1 | 4 | 76 | 217 | 307 | 2.18e-21 | 85.5 |
| Msa1466640 | AT5G27360.5 | 48.352 | 91 | 29 | 1 | 4 | 76 | 217 | 307 | 2.18e-21 | 85.5 |
| Msa1466640 | AT5G27360.1 | 48.352 | 91 | 29 | 1 | 4 | 76 | 321 | 411 | 2.62e-21 | 85.9 |
| Msa1466640 | AT5G27360.3 | 48.352 | 91 | 29 | 1 | 4 | 76 | 369 | 459 | 3.46e-21 | 85.9 |
| Msa1466640 | AT5G27350.1 | 46.154 | 91 | 31 | 1 | 4 | 76 | 317 | 407 | 1.09e-19 | 81.3 |
| Msa1466640 | AT4G04750.3 | 48.352 | 91 | 29 | 1 | 4 | 76 | 368 | 458 | 1.28e-19 | 81.3 |
| Msa1466640 | AT4G04750.1 | 48.352 | 91 | 29 | 1 | 4 | 76 | 324 | 414 | 1.38e-19 | 81.3 |
| Msa1466640 | AT4G04750.2 | 48.352 | 91 | 29 | 1 | 4 | 76 | 324 | 414 | 1.38e-19 | 81.3 |
| Msa1466640 | AT3G05160.3 | 49.438 | 89 | 27 | 1 | 4 | 74 | 258 | 346 | 1.92e-19 | 80.5 |
| Msa1466640 | AT3G05160.2 | 49.438 | 89 | 27 | 1 | 4 | 74 | 258 | 346 | 1.92e-19 | 80.5 |
| Msa1466640 | AT3G05160.1 | 49.438 | 89 | 27 | 1 | 4 | 74 | 307 | 395 | 2.47e-19 | 80.5 |
| Msa1466640 | AT3G05165.6 | 49.438 | 89 | 27 | 1 | 4 | 74 | 316 | 404 | 2.66e-19 | 80.5 |
| Msa1466640 | AT3G05165.3 | 49.438 | 89 | 27 | 1 | 4 | 74 | 316 | 404 | 2.76e-19 | 80.1 |
| Msa1466640 | AT3G05165.2 | 49.438 | 89 | 27 | 1 | 4 | 74 | 316 | 404 | 2.76e-19 | 80.1 |
| Msa1466640 | AT3G05165.1 | 49.438 | 89 | 27 | 1 | 4 | 74 | 316 | 404 | 2.76e-19 | 80.1 |
| Msa1466640 | AT3G05165.4 | 49.438 | 89 | 27 | 1 | 4 | 74 | 316 | 404 | 2.90e-19 | 80.1 |
| Msa1466640 | AT3G05165.5 | 49.438 | 89 | 27 | 1 | 4 | 74 | 316 | 404 | 2.90e-19 | 80.1 |
| Msa1466640 | AT1G08900.5 | 47.619 | 84 | 26 | 1 | 9 | 74 | 274 | 357 | 1.03e-18 | 78.6 |
| Msa1466640 | AT1G08900.3 | 47.619 | 84 | 26 | 1 | 9 | 74 | 308 | 391 | 1.06e-18 | 78.6 |
| Msa1466640 | AT1G08900.1 | 47.619 | 84 | 26 | 1 | 9 | 74 | 316 | 399 | 1.16e-18 | 78.6 |
| Msa1466640 | AT1G08900.2 | 47.619 | 84 | 26 | 1 | 9 | 74 | 316 | 399 | 1.16e-18 | 78.6 |
| Msa1466640 | AT1G08900.4 | 45.977 | 87 | 29 | 1 | 6 | 74 | 313 | 399 | 1.23e-18 | 78.6 |
| Msa1466640 | AT4G04760.3 | 45.055 | 91 | 32 | 1 | 4 | 76 | 261 | 351 | 1.71e-18 | 77.8 |
| Msa1466640 | AT4G04760.1 | 45.055 | 91 | 32 | 1 | 4 | 76 | 320 | 410 | 2.05e-18 | 77.8 |
| Msa1466640 | AT1G08890.1 | 46.429 | 84 | 27 | 1 | 9 | 74 | 318 | 401 | 2.15e-17 | 75.1 |
| Msa1466640 | AT3G05400.1 | 40.217 | 92 | 37 | 1 | 4 | 77 | 312 | 403 | 1.80e-16 | 72.4 |
| Msa1466640 | AT3G05400.2 | 40.217 | 92 | 37 | 1 | 4 | 77 | 292 | 383 | 1.89e-16 | 72.4 |
| Msa1466640 | AT3G05155.1 | 39.785 | 93 | 37 | 1 | 4 | 77 | 310 | 402 | 2.09e-15 | 69.3 |
| Msa1466640 | AT3G20460.1 | 39.773 | 88 | 35 | 1 | 2 | 71 | 337 | 424 | 7.80e-15 | 67.8 |
| Msa1466640 | AT1G08930.1 | 42.391 | 92 | 35 | 2 | 4 | 77 | 344 | 435 | 1.20e-14 | 67.0 |
| Msa1466640 | AT1G08930.2 | 42.391 | 92 | 35 | 2 | 4 | 77 | 344 | 435 | 1.20e-14 | 67.0 |
| Msa1466640 | AT1G75220.1 | 38.776 | 98 | 38 | 1 | 2 | 77 | 333 | 430 | 1.35e-14 | 67.0 |
| Msa1466640 | AT1G54730.8 | 58.730 | 63 | 8 | 1 | 20 | 64 | 313 | 375 | 1.68e-14 | 66.6 |
| Msa1466640 | AT1G19450.1 | 37.755 | 98 | 39 | 1 | 2 | 77 | 334 | 431 | 3.31e-14 | 65.9 |
| Msa1466640 | AT1G08920.3 | 46.739 | 92 | 31 | 1 | 4 | 77 | 318 | 409 | 5.66e-14 | 65.1 |
| Msa1466640 | AT1G08920.1 | 46.739 | 92 | 31 | 1 | 4 | 77 | 318 | 409 | 6.66e-14 | 65.1 |
| Msa1466640 | AT1G08920.2 | 43.434 | 99 | 31 | 2 | 4 | 77 | 318 | 416 | 8.30e-12 | 58.9 |
Find 27 sgRNAs with CRISPR-Local
Find 145 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTATTGTTCCAATACTTC+TGG | 0.234236 | tig0047985:-17 | Msa1466640:intergenic |
| AGCAGAACCCTTCACATTGA+TGG | 0.376678 | tig0047985:-959 | Msa1466640:intergenic |
| ATCTTATTCATCATATTAAG+AGG | 0.394596 | tig0047985:-92 | Msa1466640:intergenic |
| ATTACTCCCAAAGCTGTCAT+TGG | 0.396470 | tig0047985:-192 | Msa1466640:intergenic |
| GCTTTGTTACATTTGTTCAC+TGG | 0.446450 | tig0047985:+974 | Msa1466640:CDS |
| ATCAATGTGAAGGGTTCTGC+TGG | 0.456001 | tig0047985:+949 | Msa1466640:CDS |
| CATAATAATCAGGTATATAC+CGG | 0.492927 | tig0047985:+784 | Msa1466640:intron |
| CGGATCTTTCTCACTTGGCA+TGG | 0.497102 | tig0047985:+804 | Msa1466640:CDS |
| TTACTCCCAAAGCTGTCATT+GGG | 0.497965 | tig0047985:-191 | Msa1466640:intergenic |
| TCTGCATCAGGAACATGCTT+AGG | 0.498862 | tig0047985:+332 | Msa1466640:CDS |
| ATTATACAGATCTCTGCATC+AGG | 0.511602 | tig0047985:+320 | Msa1466640:intron |
| GATATTTCCCATCAATGTGA+AGG | 0.523629 | tig0047985:+939 | Msa1466640:intron |
| TTGGCATGGGAGGAATACCC+TGG | 0.527653 | tig0047985:+818 | Msa1466640:CDS |
| GCAGAACCCTTCACATTGAT+GGG | 0.528455 | tig0047985:-958 | Msa1466640:intergenic |
| GGATCTTTCTCACTTGGCAT+GGG | 0.535076 | tig0047985:+805 | Msa1466640:CDS |
| AAATTACTGAACAGTGTGAA+GGG | 0.536601 | tig0047985:-154 | Msa1466640:intergenic |
| TCTTTCTCACTTGGCATGGG+AGG | 0.546522 | tig0047985:+808 | Msa1466640:CDS |
| CATGCCAAGTGAGAAAGATC+CGG | 0.555741 | tig0047985:-803 | Msa1466640:intergenic |
| TATACCGGATCTTTCTCACT+TGG | 0.576596 | tig0047985:+799 | Msa1466640:CDS |
| ACCTCAGACATTATAACCCA+GGG | 0.595175 | tig0047985:-835 | Msa1466640:intergenic |
| ATATTTCCCATCAATGTGAA+GGG | 0.595917 | tig0047985:+940 | Msa1466640:CDS |
| GAAATTACTGAACAGTGTGA+AGG | 0.597512 | tig0047985:-155 | Msa1466640:intergenic |
| TACCTCAGACATTATAACCC+AGG | 0.616486 | tig0047985:-836 | Msa1466640:intergenic |
| AAAAGAATGACAGAGATACA+AGG | 0.644048 | tig0047985:-361 | Msa1466640:intergenic |
| ACCCTGGGTTATAATGTCTG+AGG | 0.647294 | tig0047985:+834 | Msa1466640:CDS |
| TGGCATGGGAGGAATACCCT+GGG | 0.647522 | tig0047985:+819 | Msa1466640:CDS |
| AATTACTGAACAGTGTGAAG+GGG | 0.673821 | tig0047985:-153 | Msa1466630:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTTATTCATCATATTAAG+AGG | - | tig0047985:95-114 | Msa1466640:intergenic | 20.0% |
| !!! | AACTTTCTCTATTTTAAATG+TGG | + | tig0047985:617-636 | Msa1466640:intron | 20.0% |
| !! | ATTTCATGAATGCAAATATA+AGG | - | tig0047985:687-706 | Msa1466640:intergenic | 20.0% |
| !! | TGATTATTATGGTAACTAAA+TGG | - | tig0047985:775-794 | Msa1466640:intergenic | 20.0% |
| !! | ATTTAGTTACCATAATAATC+AGG | + | tig0047985:774-793 | Msa1466640:intron | 20.0% |
| !! | AAAAAATGATTATCAAGATG+AGG | - | tig0047985:913-932 | Msa1466640:intergenic | 20.0% |
| !! | ATCTTATTCATCATATTAAG+AGG | - | tig0047985:95-114 | Msa1466640:intergenic | 20.0% |
| !!! | AACTTTCTCTATTTTAAATG+TGG | + | tig0047985:617-636 | Msa1466640:intron | 20.0% |
| !! | ATTTCATGAATGCAAATATA+AGG | - | tig0047985:687-706 | Msa1466640:intergenic | 20.0% |
| !! | TGATTATTATGGTAACTAAA+TGG | - | tig0047985:775-794 | Msa1466640:intergenic | 20.0% |
| !! | ATTTAGTTACCATAATAATC+AGG | + | tig0047985:774-793 | Msa1466640:intron | 20.0% |
| !! | AAAAAATGATTATCAAGATG+AGG | - | tig0047985:913-932 | Msa1466640:intergenic | 20.0% |
| ! | TATGATGAATAAGATGAGAT+AGG | + | tig0047985:100-119 | Msa1466640:five_prime_UTR | 25.0% |
| !!! | GTAATTTTGATGGATAAATC+TGG | + | tig0047985:210-229 | Msa1466640:CDS | 25.0% |
| !! | TAATCGTTTTACCAGTAAAA+GGG | - | tig0047985:244-263 | Msa1466640:intergenic | 25.0% |
| !! | TTAATCGTTTTACCAGTAAA+AGG | - | tig0047985:245-264 | Msa1466640:intergenic | 25.0% |
| ! | ATTTACAGAATAGCATGAAA+AGG | - | tig0047985:281-300 | Msa1466640:intergenic | 25.0% |
| !!! | AAATCAGAGAAAGTATTAGT+AGG | - | tig0047985:656-675 | Msa1466640:intergenic | 25.0% |
| !! | TGGTAAAGTTAAAAGGTATA+TGG | + | tig0047985:734-753 | Msa1466640:intron | 25.0% |
| ! | CATAATAATCAGGTATATAC+CGG | + | tig0047985:784-803 | Msa1466640:intron | 25.0% |
| ! | TATGATGAATAAGATGAGAT+AGG | + | tig0047985:100-119 | Msa1466640:five_prime_UTR | 25.0% |
| !!! | GTAATTTTGATGGATAAATC+TGG | + | tig0047985:210-229 | Msa1466640:CDS | 25.0% |
| !! | TAATCGTTTTACCAGTAAAA+GGG | - | tig0047985:244-263 | Msa1466640:intergenic | 25.0% |
| !! | TTAATCGTTTTACCAGTAAA+AGG | - | tig0047985:245-264 | Msa1466640:intergenic | 25.0% |
| ! | ATTTACAGAATAGCATGAAA+AGG | - | tig0047985:281-300 | Msa1466640:intergenic | 25.0% |
| !!! | AAATCAGAGAAAGTATTAGT+AGG | - | tig0047985:656-675 | Msa1466640:intergenic | 25.0% |
| !! | TGGTAAAGTTAAAAGGTATA+TGG | + | tig0047985:734-753 | Msa1466640:intron | 25.0% |
| ! | CATAATAATCAGGTATATAC+CGG | + | tig0047985:784-803 | Msa1466640:intron | 25.0% |
| !! | AAGTATTGGAACAATAGCAA+TGG | + | tig0047985:21-40 | Msa1466640:five_prime_UTR | 30.0% |
| AAATTACTGAACAGTGTGAA+GGG | - | tig0047985:157-176 | Msa1466640:intergenic | 30.0% | |
| ! | AATCGTTTTACCAGTAAAAG+GGG | - | tig0047985:243-262 | Msa1466640:intergenic | 30.0% |
| AAAAGAATGACAGAGATACA+AGG | - | tig0047985:364-383 | Msa1466640:intergenic | 30.0% | |
| ! | ATTGTTTTCTTCCAATATGC+AGG | + | tig0047985:459-478 | Msa1466640:intron | 30.0% |
| !! | GACTTATAAATCGGTTTTGT+AGG | - | tig0047985:576-595 | Msa1466640:intergenic | 30.0% |
| CATGAATGCAAATATAAGGT+TGG | - | tig0047985:683-702 | Msa1466640:intergenic | 30.0% | |
| TTGCATTCATGAAATAGACT+TGG | + | tig0047985:692-711 | Msa1466640:intron | 30.0% | |
| CGGTATATACCTGATTATTA+TGG | - | tig0047985:786-805 | Msa1466640:intergenic | 30.0% | |
| ATATTTCCCATCAATGTGAA+GGG | + | tig0047985:940-959 | Msa1466640:CDS | 30.0% | |
| !! | AAGTATTGGAACAATAGCAA+TGG | + | tig0047985:21-40 | Msa1466640:five_prime_UTR | 30.0% |
| AAATTACTGAACAGTGTGAA+GGG | - | tig0047985:157-176 | Msa1466640:intergenic | 30.0% | |
| ! | AATCGTTTTACCAGTAAAAG+GGG | - | tig0047985:243-262 | Msa1466640:intergenic | 30.0% |
| AAAAGAATGACAGAGATACA+AGG | - | tig0047985:364-383 | Msa1466640:intergenic | 30.0% | |
| ! | ATTGTTTTCTTCCAATATGC+AGG | + | tig0047985:459-478 | Msa1466640:intron | 30.0% |
| !! | GACTTATAAATCGGTTTTGT+AGG | - | tig0047985:576-595 | Msa1466640:intergenic | 30.0% |
| CATGAATGCAAATATAAGGT+TGG | - | tig0047985:683-702 | Msa1466640:intergenic | 30.0% | |
| TTGCATTCATGAAATAGACT+TGG | + | tig0047985:692-711 | Msa1466640:intron | 30.0% | |
| CGGTATATACCTGATTATTA+TGG | - | tig0047985:786-805 | Msa1466640:intergenic | 30.0% | |
| ATATTTCCCATCAATGTGAA+GGG | + | tig0047985:940-959 | Msa1466640:CDS | 30.0% | |
| TGCTATTGTTCCAATACTTC+TGG | - | tig0047985:20-39 | None:intergenic | 35.0% | |
| ! | AATAGCAATGGTTGTTGTTC+AGG | + | tig0047985:33-52 | Msa1466640:five_prime_UTR | 35.0% |
| AATTACTGAACAGTGTGAAG+GGG | - | tig0047985:156-175 | Msa1466640:intergenic | 35.0% | |
| GAAATTACTGAACAGTGTGA+AGG | - | tig0047985:158-177 | Msa1466640:intergenic | 35.0% | |
| !!! | AGCTTTGGGAGTAATTTTGA+TGG | + | tig0047985:200-219 | Msa1466640:CDS | 35.0% |
| ACAGAATAGCATGAAAAGGA+AGG | - | tig0047985:277-296 | Msa1466640:intergenic | 35.0% | |
| ATTATACAGATCTCTGCATC+AGG | + | tig0047985:320-339 | Msa1466640:intron | 35.0% | |
| ! | ATCTCTGTCATTCTTTTTGC+AGG | + | tig0047985:367-386 | Msa1466640:CDS | 35.0% |
| TTTATGCAAGTCCTGCATAT+TGG | - | tig0047985:473-492 | Msa1466640:intergenic | 35.0% | |
| ATATGCAGGACTTGCATAAA+TGG | + | tig0047985:473-492 | Msa1466640:intron | 35.0% | |
| ! | CAAAACCGATTTATAAGTCG+AGG | + | tig0047985:577-596 | Msa1466640:intron | 35.0% |
| ACACTCCTCGACTTATAAAT+CGG | - | tig0047985:585-604 | Msa1466640:intergenic | 35.0% | |
| !!! | TTTTAACTTTACCACCATCG+CGG | - | tig0047985:728-747 | Msa1466640:intergenic | 35.0% |
| AAAATTTGCATACCCAGTGA+AGG | - | tig0047985:869-888 | Msa1466640:intergenic | 35.0% | |
| TCACATTGATGGGAAATATC+TGG | - | tig0047985:939-958 | Msa1466640:intergenic | 35.0% | |
| GATATTTCCCATCAATGTGA+AGG | + | tig0047985:939-958 | Msa1466640:intron | 35.0% | |
| TGCTATTGTTCCAATACTTC+TGG | - | tig0047985:20-39 | Msa1466640:intergenic | 35.0% | |
| ! | AATAGCAATGGTTGTTGTTC+AGG | + | tig0047985:33-52 | Msa1466640:five_prime_UTR | 35.0% |
| AATTACTGAACAGTGTGAAG+GGG | - | tig0047985:156-175 | Msa1466640:intergenic | 35.0% | |
| GAAATTACTGAACAGTGTGA+AGG | - | tig0047985:158-177 | Msa1466640:intergenic | 35.0% | |
| !!! | AGCTTTGGGAGTAATTTTGA+TGG | + | tig0047985:200-219 | Msa1466640:CDS | 35.0% |
| ACAGAATAGCATGAAAAGGA+AGG | - | tig0047985:277-296 | Msa1466640:intergenic | 35.0% | |
| ATTATACAGATCTCTGCATC+AGG | + | tig0047985:320-339 | Msa1466640:intron | 35.0% | |
| ! | ATCTCTGTCATTCTTTTTGC+AGG | + | tig0047985:367-386 | Msa1466640:CDS | 35.0% |
| TTTATGCAAGTCCTGCATAT+TGG | - | tig0047985:473-492 | Msa1466640:intergenic | 35.0% | |
| ATATGCAGGACTTGCATAAA+TGG | + | tig0047985:473-492 | Msa1466640:intron | 35.0% | |
| ! | CAAAACCGATTTATAAGTCG+AGG | + | tig0047985:577-596 | Msa1466640:intron | 35.0% |
| ACACTCCTCGACTTATAAAT+CGG | - | tig0047985:585-604 | Msa1466640:intergenic | 35.0% | |
| !!! | TTTTAACTTTACCACCATCG+CGG | - | tig0047985:728-747 | Msa1466640:intergenic | 35.0% |
| AAAATTTGCATACCCAGTGA+AGG | - | tig0047985:869-888 | Msa1466640:intergenic | 35.0% | |
| TCACATTGATGGGAAATATC+TGG | - | tig0047985:939-958 | Msa1466640:intergenic | 35.0% | |
| GATATTTCCCATCAATGTGA+AGG | + | tig0047985:939-958 | Msa1466640:intron | 35.0% | |
| ATAGATCCCAATGACAGCTT+TGG | + | tig0047985:185-204 | Msa1466640:exon | 40.0% | |
| TAGATCCCAATGACAGCTTT+GGG | + | tig0047985:186-205 | Msa1466640:exon | 40.0% | |
| TTACTCCCAAAGCTGTCATT+GGG | - | tig0047985:194-213 | Msa1466640:intergenic | 40.0% | |
| ATTACTCCCAAAGCTGTCAT+TGG | - | tig0047985:195-214 | Msa1466640:intergenic | 40.0% | |
| TAAGATGATCTGCTCTTGCT+AGG | + | tig0047985:402-421 | Msa1466640:intron | 40.0% | |
| GCTAGGTTGTTCTTCACAAT+AGG | + | tig0047985:419-438 | Msa1466640:intron | 40.0% | |
| TTGGTTTAAGAATACCGCGA+TGG | + | tig0047985:711-730 | Msa1466640:intron | 40.0% | |
| ! | GCGATGGTGGTAAAGTTAAA+AGG | + | tig0047985:727-746 | Msa1466640:intron | 40.0% |
| TATACCGGATCTTTCTCACT+TGG | + | tig0047985:799-818 | Msa1466640:CDS | 40.0% | |
| ACCTCAGACATTATAACCCA+GGG | - | tig0047985:838-857 | Msa1466640:intergenic | 40.0% | |
| TACCTCAGACATTATAACCC+AGG | - | tig0047985:839-858 | Msa1466640:intergenic | 40.0% | |
| AGGTAATATGCTCCTTCACT+GGG | + | tig0047985:854-873 | Msa1466640:intron | 40.0% | |
| ATAGATCCCAATGACAGCTT+TGG | + | tig0047985:185-204 | Msa1466640:exon | 40.0% | |
| TAGATCCCAATGACAGCTTT+GGG | + | tig0047985:186-205 | Msa1466640:exon | 40.0% | |
| TTACTCCCAAAGCTGTCATT+GGG | - | tig0047985:194-213 | Msa1466640:intergenic | 40.0% | |
| ATTACTCCCAAAGCTGTCAT+TGG | - | tig0047985:195-214 | Msa1466640:intergenic | 40.0% | |
| TAAGATGATCTGCTCTTGCT+AGG | + | tig0047985:402-421 | Msa1466640:intron | 40.0% | |
| GCTAGGTTGTTCTTCACAAT+AGG | + | tig0047985:419-438 | Msa1466640:intron | 40.0% | |
| TTGGTTTAAGAATACCGCGA+TGG | + | tig0047985:711-730 | Msa1466640:intron | 40.0% | |
| ! | GCGATGGTGGTAAAGTTAAA+AGG | + | tig0047985:727-746 | Msa1466640:intron | 40.0% |
| TATACCGGATCTTTCTCACT+TGG | + | tig0047985:799-818 | Msa1466640:CDS | 40.0% | |
| ACCTCAGACATTATAACCCA+GGG | - | tig0047985:838-857 | Msa1466640:intergenic | 40.0% | |
| TACCTCAGACATTATAACCC+AGG | - | tig0047985:839-858 | Msa1466640:intergenic | 40.0% | |
| AGGTAATATGCTCCTTCACT+GGG | + | tig0047985:854-873 | Msa1466640:intron | 40.0% | |
| TCTGCATCAGGAACATGCTT+AGG | + | tig0047985:332-351 | Msa1466640:CDS | 45.0% | |
| GCAGGACTTGCATAAATGGA+AGG | + | tig0047985:477-496 | Msa1466640:intron | 45.0% | |
| GAAGGAATTCAGTCCCATTC+TGG | + | tig0047985:495-514 | Msa1466640:intron | 45.0% | |
| GTTTAAGAATACCGCGATGG+TGG | + | tig0047985:714-733 | Msa1466640:intron | 45.0% | |
| CATGCCAAGTGAGAAAGATC+CGG | - | tig0047985:806-825 | Msa1466640:intergenic | 45.0% | |
| GGATCTTTCTCACTTGGCAT+GGG | + | tig0047985:805-824 | Msa1466640:CDS | 45.0% | |
| ACCCTGGGTTATAATGTCTG+AGG | + | tig0047985:834-853 | Msa1466640:CDS | 45.0% | |
| GAGGTAATATGCTCCTTCAC+TGG | + | tig0047985:853-872 | Msa1466640:intron | 45.0% | |
| GCAGAACCCTTCACATTGAT+GGG | - | tig0047985:949-968 | Msa1466640:intergenic | 45.0% | |
| AGCAGAACCCTTCACATTGA+TGG | - | tig0047985:950-969 | Msa1466640:intergenic | 45.0% | |
| ATCAATGTGAAGGGTTCTGC+TGG | + | tig0047985:949-968 | Msa1466640:CDS | 45.0% | |
| ! | CCAATACTTCTGGAAAACCC+TGG | - | tig0047985:10-29 | Msa1466640:intergenic | 45.0% |
| TCTGCATCAGGAACATGCTT+AGG | + | tig0047985:332-351 | Msa1466640:CDS | 45.0% | |
| GCAGGACTTGCATAAATGGA+AGG | + | tig0047985:477-496 | Msa1466640:intron | 45.0% | |
| GAAGGAATTCAGTCCCATTC+TGG | + | tig0047985:495-514 | Msa1466640:intron | 45.0% | |
| GTTTAAGAATACCGCGATGG+TGG | + | tig0047985:714-733 | Msa1466640:intron | 45.0% | |
| CATGCCAAGTGAGAAAGATC+CGG | - | tig0047985:806-825 | Msa1466640:intergenic | 45.0% | |
| GGATCTTTCTCACTTGGCAT+GGG | + | tig0047985:805-824 | Msa1466640:CDS | 45.0% | |
| ACCCTGGGTTATAATGTCTG+AGG | + | tig0047985:834-853 | Msa1466640:CDS | 45.0% | |
| GAGGTAATATGCTCCTTCAC+TGG | + | tig0047985:853-872 | Msa1466640:intron | 45.0% | |
| GCAGAACCCTTCACATTGAT+GGG | - | tig0047985:949-968 | Msa1466640:intergenic | 45.0% | |
| AGCAGAACCCTTCACATTGA+TGG | - | tig0047985:950-969 | Msa1466640:intergenic | 45.0% | |
| ATCAATGTGAAGGGTTCTGC+TGG | + | tig0047985:949-968 | Msa1466640:CDS | 45.0% | |
| ! | TGGAAGACGACCCCTTTTAC+TGG | + | tig0047985:230-249 | Msa1466640:CDS | 50.0% |
| CGGATCTTTCTCACTTGGCA+TGG | + | tig0047985:804-823 | Msa1466640:CDS | 50.0% | |
| TCTTTCTCACTTGGCATGGG+AGG | + | tig0047985:808-827 | Msa1466640:CDS | 50.0% | |
| ! | TGGAAGACGACCCCTTTTAC+TGG | + | tig0047985:230-249 | Msa1466640:CDS | 50.0% |
| CGGATCTTTCTCACTTGGCA+TGG | + | tig0047985:804-823 | Msa1466640:CDS | 50.0% | |
| TCTTTCTCACTTGGCATGGG+AGG | + | tig0047985:808-827 | Msa1466640:CDS | 50.0% | |
| AGTCCCATTCTGGCACTCGT+CGG | + | tig0047985:505-524 | Msa1466640:intron | 55.0% | |
| ACACCGACGAGTGCCAGAAT+GGG | - | tig0047985:511-530 | Msa1466640:intergenic | 55.0% | |
| TACACCGACGAGTGCCAGAA+TGG | - | tig0047985:512-531 | Msa1466640:intergenic | 55.0% | |
| TTGGCATGGGAGGAATACCC+TGG | + | tig0047985:818-837 | Msa1466640:CDS | 55.0% | |
| TGGCATGGGAGGAATACCCT+GGG | + | tig0047985:819-838 | Msa1466640:CDS | 55.0% | |
| AGTCCCATTCTGGCACTCGT+CGG | + | tig0047985:505-524 | Msa1466640:intron | 55.0% | |
| ACACCGACGAGTGCCAGAAT+GGG | - | tig0047985:511-530 | Msa1466640:intergenic | 55.0% | |
| TACACCGACGAGTGCCAGAA+TGG | - | tig0047985:512-531 | Msa1466640:intergenic | 55.0% | |
| TTGGCATGGGAGGAATACCC+TGG | + | tig0047985:818-837 | Msa1466640:CDS | 55.0% | |
| TGGCATGGGAGGAATACCCT+GGG | + | tig0047985:819-838 | Msa1466640:CDS | 55.0% | |
| TCTGGCACTCGTCGGTGTAC+TGG | + | tig0047985:513-532 | Msa1466640:intron | 60.0% | |
| TCTGGCACTCGTCGGTGTAC+TGG | + | tig0047985:513-532 | Msa1466640:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0047985 | gene | 8 | 993 | 8 | ID=Msa1466640;Name=Msa1466640 |
| tig0047985 | mRNA | 8 | 993 | 8 | ID=Msa1466640-mRNA-1;Parent=Msa1466640;Name=Msa1466640-mRNA-1;_AED=0.27;_eAED=0.27;_QI=187|0.66|0.75|1|0.66|1|4|0|77 |
| tig0047985 | exon | 8 | 251 | 8 | ID=Msa1466640-mRNA-1:exon:25110;Parent=Msa1466640-mRNA-1 |
| tig0047985 | exon | 329 | 388 | 329 | ID=Msa1466640-mRNA-1:exon:25111;Parent=Msa1466640-mRNA-1 |
| tig0047985 | exon | 796 | 855 | 796 | ID=Msa1466640-mRNA-1:exon:25112;Parent=Msa1466640-mRNA-1 |
| tig0047985 | exon | 940 | 993 | 940 | ID=Msa1466640-mRNA-1:exon:25113;Parent=Msa1466640-mRNA-1 |
| tig0047985 | five_prime_UTR | 8 | 194 | 8 | ID=Msa1466640-mRNA-1:five_prime_utr;Parent=Msa1466640-mRNA-1 |
| tig0047985 | CDS | 195 | 251 | 195 | ID=Msa1466640-mRNA-1:cds;Parent=Msa1466640-mRNA-1 |
| tig0047985 | CDS | 329 | 388 | 329 | ID=Msa1466640-mRNA-1:cds;Parent=Msa1466640-mRNA-1 |
| tig0047985 | CDS | 796 | 855 | 796 | ID=Msa1466640-mRNA-1:cds;Parent=Msa1466640-mRNA-1 |
| tig0047985 | CDS | 940 | 993 | 940 | ID=Msa1466640-mRNA-1:cds;Parent=Msa1466640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
