Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466740 | KEH24495.1 | 96.396 | 111 | 3 | 1 | 1 | 111 | 1 | 110 | 7.07e-71 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466740 | sp|Q9QYI7|DNJB8_MOUSE | 60.606 | 66 | 23 | 1 | 17 | 82 | 4 | 66 | 2.57e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466740 | A0A072UFC5 | 96.396 | 111 | 3 | 1 | 1 | 111 | 1 | 110 | 3.38e-71 | 217 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1084030 | Msa1466740 | 0.825977 | 3.491736e-54 | -8.615850e-47 |
| Msa1128260 | Msa1466740 | 0.813231 | 2.842423e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466740 | MtrunA17_Chr7g0271891 | 98.936 | 94 | 1 | 0 | 1 | 94 | 1 | 94 | 3.54e-65 | 194 |
| Msa1466740 | MtrunA17_Chr4g0044331 | 65.000 | 80 | 26 | 1 | 22 | 101 | 18 | 95 | 2.14e-30 | 105 |
| Msa1466740 | MtrunA17_Chr8g0344721 | 50.000 | 88 | 42 | 1 | 8 | 93 | 2 | 89 | 1.18e-25 | 95.9 |
| Msa1466740 | MtrunA17_Chr3g0138471 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 2.78e-19 | 80.9 |
| Msa1466740 | MtrunA17_Chr2g0324921 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 3.77e-18 | 77.8 |
| Msa1466740 | MtrunA17_Chr4g0021141 | 45.946 | 74 | 36 | 1 | 9 | 82 | 15 | 84 | 5.54e-17 | 71.2 |
| Msa1466740 | MtrunA17_Chr2g0282741 | 46.970 | 66 | 32 | 1 | 17 | 82 | 5 | 67 | 6.42e-17 | 74.3 |
| Msa1466740 | MtrunA17_Chr4g0040501 | 48.485 | 66 | 31 | 1 | 17 | 82 | 5 | 67 | 6.42e-17 | 74.3 |
| Msa1466740 | MtrunA17_Chr4g0006391 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 1.04e-16 | 73.9 |
| Msa1466740 | MtrunA17_Chr1g0209551 | 40.000 | 90 | 50 | 1 | 1 | 90 | 1 | 86 | 1.04e-16 | 73.9 |
| Msa1466740 | MtrunA17_Chr2g0282761 | 48.485 | 66 | 31 | 1 | 17 | 82 | 5 | 67 | 1.06e-16 | 73.9 |
| Msa1466740 | MtrunA17_Chr4g0061421 | 45.588 | 68 | 37 | 0 | 16 | 83 | 8 | 75 | 2.16e-16 | 73.6 |
| Msa1466740 | MtrunA17_Chr5g0415731 | 44.286 | 70 | 35 | 1 | 17 | 82 | 6 | 75 | 2.41e-16 | 69.7 |
| Msa1466740 | MtrunA17_Chr7g0258061 | 44.706 | 85 | 42 | 3 | 18 | 101 | 24 | 104 | 2.03e-15 | 69.7 |
| Msa1466740 | MtrunA17_Chr1g0173931 | 44.737 | 76 | 38 | 2 | 7 | 82 | 29 | 100 | 2.68e-15 | 69.3 |
| Msa1466740 | MtrunA17_Chr7g0263971 | 46.250 | 80 | 38 | 2 | 12 | 91 | 365 | 439 | 4.25e-15 | 69.7 |
| Msa1466740 | MtrunA17_Chr3g0123861 | 50.000 | 66 | 28 | 2 | 17 | 82 | 83 | 143 | 4.33e-15 | 69.7 |
| Msa1466740 | MtrunA17_Chr6g0460461 | 44.776 | 67 | 36 | 1 | 17 | 82 | 3 | 69 | 4.70e-15 | 67.8 |
| Msa1466740 | MtrunA17_Chr6g0478651 | 46.970 | 66 | 30 | 2 | 17 | 82 | 69 | 129 | 5.44e-14 | 66.6 |
| Msa1466740 | MtrunA17_Chr7g0269841 | 48.485 | 66 | 30 | 2 | 17 | 82 | 27 | 88 | 1.12e-13 | 65.5 |
| Msa1466740 | MtrunA17_Chr6g0460381 | 43.284 | 67 | 37 | 1 | 17 | 82 | 4 | 70 | 1.50e-13 | 63.5 |
| Msa1466740 | MtrunA17_Chr8g0378161 | 46.970 | 66 | 33 | 1 | 17 | 82 | 61 | 124 | 1.79e-13 | 63.2 |
| Msa1466740 | MtrunA17_Chr6g0460411 | 43.284 | 67 | 37 | 1 | 17 | 82 | 3 | 69 | 2.23e-13 | 63.5 |
| Msa1466740 | MtrunA17_Chr4g0010781 | 47.368 | 76 | 34 | 2 | 7 | 82 | 79 | 148 | 3.25e-13 | 64.3 |
| Msa1466740 | MtrunA17_Chr5g0427221 | 43.836 | 73 | 37 | 1 | 12 | 84 | 44 | 112 | 4.89e-13 | 61.2 |
| Msa1466740 | MtrunA17_Chr2g0333221 | 46.377 | 69 | 32 | 2 | 14 | 82 | 68 | 131 | 6.25e-13 | 63.5 |
| Msa1466740 | MtrunA17_Chr5g0426951 | 43.939 | 66 | 33 | 1 | 17 | 82 | 84 | 145 | 8.30e-13 | 63.2 |
| Msa1466740 | MtrunA17_Chr3g0087741 | 46.970 | 66 | 31 | 1 | 17 | 82 | 90 | 151 | 9.04e-13 | 63.2 |
| Msa1466740 | MtrunA17_Chr5g0399201 | 41.558 | 77 | 40 | 2 | 18 | 90 | 14 | 89 | 2.26e-12 | 62.0 |
| Msa1466740 | MtrunA17_Chr5g0414471 | 37.662 | 77 | 44 | 1 | 18 | 94 | 27 | 99 | 3.58e-12 | 61.2 |
| Msa1466740 | MtrunA17_Chr8g0334811 | 39.080 | 87 | 45 | 1 | 5 | 91 | 3 | 81 | 5.16e-12 | 60.8 |
| Msa1466740 | MtrunA17_Chr4g0038931 | 38.542 | 96 | 35 | 2 | 18 | 97 | 956 | 1043 | 1.59e-11 | 59.7 |
| Msa1466740 | MtrunA17_Chr6g0448791 | 36.111 | 72 | 43 | 1 | 17 | 85 | 12 | 83 | 6.18e-11 | 56.2 |
| Msa1466740 | MtrunA17_Chr1g0159491 | 42.424 | 66 | 34 | 1 | 17 | 82 | 7 | 68 | 6.73e-11 | 53.9 |
| Msa1466740 | MtrunA17_Chr5g0405491 | 38.384 | 99 | 47 | 4 | 18 | 111 | 73 | 162 | 8.68e-11 | 55.8 |
| Msa1466740 | MtrunA17_Chr8g0352451 | 44.286 | 70 | 35 | 1 | 13 | 82 | 69 | 134 | 9.37e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1466740 | AT1G56300.2 | 77.778 | 90 | 17 | 2 | 1 | 90 | 1 | 87 | 4.14e-45 | 142 |
| Msa1466740 | AT1G56300.1 | 77.778 | 90 | 17 | 2 | 1 | 90 | 1 | 87 | 2.58e-44 | 141 |
| Msa1466740 | AT1G71000.2 | 61.446 | 83 | 31 | 1 | 10 | 92 | 3 | 84 | 4.11e-30 | 105 |
| Msa1466740 | AT1G71000.1 | 60.714 | 84 | 32 | 1 | 9 | 92 | 2 | 84 | 8.64e-30 | 105 |
| Msa1466740 | AT3G14200.1 | 50.649 | 77 | 37 | 1 | 18 | 94 | 14 | 89 | 3.77e-22 | 87.0 |
| Msa1466740 | AT1G72416.2 | 45.333 | 75 | 40 | 1 | 18 | 92 | 7 | 80 | 7.54e-19 | 77.8 |
| Msa1466740 | AT1G72416.3 | 45.333 | 75 | 40 | 1 | 18 | 92 | 7 | 80 | 7.79e-19 | 77.8 |
| Msa1466740 | AT1G72416.1 | 45.333 | 75 | 40 | 1 | 18 | 92 | 7 | 80 | 9.06e-19 | 77.4 |
| Msa1466740 | AT1G72416.4 | 45.333 | 75 | 40 | 1 | 18 | 92 | 7 | 80 | 9.54e-19 | 77.4 |
| Msa1466740 | AT5G25530.2 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 4.71e-18 | 77.8 |
| Msa1466740 | AT3G08910.1 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 8.49e-18 | 77.0 |
| Msa1466740 | AT4G28480.2 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 1.09e-17 | 76.3 |
| Msa1466740 | AT1G59725.1 | 52.239 | 67 | 28 | 2 | 17 | 82 | 5 | 68 | 1.99e-17 | 76.3 |
| Msa1466740 | AT4G28480.1 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 2.70e-17 | 75.9 |
| Msa1466740 | AT1G10350.1 | 50.000 | 66 | 30 | 1 | 17 | 82 | 5 | 67 | 3.82e-17 | 75.5 |
| Msa1466740 | AT2G20560.1 | 53.030 | 66 | 28 | 1 | 17 | 82 | 5 | 67 | 3.92e-17 | 75.5 |
| Msa1466740 | AT5G01390.3 | 50.000 | 66 | 30 | 1 | 17 | 82 | 5 | 67 | 8.07e-17 | 73.2 |
| Msa1466740 | AT5G01390.2 | 50.000 | 66 | 30 | 1 | 17 | 82 | 5 | 67 | 1.09e-16 | 73.6 |
| Msa1466740 | AT5G01390.4 | 50.000 | 66 | 30 | 1 | 17 | 82 | 5 | 67 | 1.13e-16 | 72.8 |
| Msa1466740 | AT5G01390.1 | 50.000 | 66 | 30 | 1 | 17 | 82 | 5 | 67 | 2.24e-16 | 73.2 |
| Msa1466740 | AT3G47940.1 | 49.254 | 67 | 30 | 2 | 17 | 82 | 5 | 68 | 9.75e-16 | 71.6 |
| Msa1466740 | AT5G25530.1 | 47.297 | 74 | 28 | 2 | 17 | 82 | 5 | 75 | 2.01e-15 | 70.5 |
| Msa1466740 | AT2G41000.1 | 43.478 | 69 | 38 | 1 | 17 | 84 | 4 | 72 | 2.74e-15 | 68.2 |
| Msa1466740 | AT2G41000.2 | 43.478 | 69 | 38 | 1 | 17 | 84 | 4 | 72 | 4.43e-15 | 68.2 |
| Msa1466740 | AT5G16650.1 | 43.750 | 80 | 40 | 2 | 9 | 87 | 4 | 79 | 5.42e-15 | 66.2 |
| Msa1466740 | AT3G12170.1 | 44.000 | 75 | 38 | 1 | 8 | 82 | 3 | 73 | 5.83e-15 | 68.6 |
| Msa1466740 | AT2G22360.1 | 48.485 | 66 | 29 | 2 | 17 | 82 | 87 | 147 | 1.28e-14 | 68.6 |
| Msa1466740 | AT5G06910.1 | 45.205 | 73 | 36 | 1 | 10 | 82 | 23 | 91 | 1.52e-14 | 67.8 |
| Msa1466740 | AT5G16650.2 | 43.750 | 80 | 40 | 2 | 9 | 87 | 4 | 79 | 1.71e-14 | 65.9 |
| Msa1466740 | AT5G03160.1 | 45.205 | 73 | 37 | 1 | 12 | 84 | 366 | 435 | 1.72e-14 | 68.2 |
| Msa1466740 | AT3G12170.2 | 44.000 | 75 | 38 | 1 | 8 | 82 | 39 | 109 | 1.92e-14 | 67.8 |
| Msa1466740 | AT2G33735.1 | 46.970 | 66 | 31 | 1 | 17 | 82 | 23 | 84 | 3.52e-14 | 63.9 |
| Msa1466740 | AT2G33735.2 | 46.970 | 66 | 31 | 1 | 17 | 82 | 23 | 84 | 3.52e-14 | 63.9 |
| Msa1466740 | AT1G68370.1 | 42.466 | 73 | 38 | 1 | 18 | 90 | 19 | 87 | 5.71e-14 | 66.6 |
| Msa1466740 | AT1G74250.1 | 41.026 | 78 | 45 | 1 | 7 | 83 | 2 | 79 | 7.58e-14 | 66.6 |
| Msa1466740 | AT4G39960.1 | 48.485 | 66 | 29 | 2 | 17 | 82 | 86 | 146 | 2.39e-13 | 65.1 |
| Msa1466740 | AT4G39960.2 | 48.485 | 66 | 29 | 2 | 17 | 82 | 86 | 146 | 2.39e-13 | 65.1 |
| Msa1466740 | AT3G62600.1 | 48.485 | 66 | 30 | 1 | 17 | 82 | 27 | 88 | 4.90e-13 | 63.9 |
| Msa1466740 | AT1G24120.1 | 37.662 | 77 | 44 | 1 | 18 | 94 | 22 | 94 | 7.87e-13 | 63.5 |
| Msa1466740 | AT5G12430.1 | 46.154 | 91 | 27 | 4 | 18 | 92 | 1026 | 1110 | 1.15e-12 | 63.2 |
| Msa1466740 | AT5G48030.1 | 38.667 | 75 | 42 | 1 | 17 | 91 | 95 | 165 | 1.57e-12 | 62.8 |
| Msa1466740 | AT3G17830.1 | 45.205 | 73 | 31 | 3 | 17 | 85 | 64 | 131 | 6.48e-12 | 60.8 |
| Msa1466740 | AT1G59980.2 | 38.372 | 86 | 47 | 2 | 18 | 101 | 25 | 106 | 6.73e-12 | 60.8 |
| Msa1466740 | AT1G28210.3 | 38.272 | 81 | 44 | 2 | 6 | 86 | 40 | 114 | 7.59e-12 | 60.8 |
| Msa1466740 | AT1G28210.1 | 38.272 | 81 | 44 | 2 | 6 | 86 | 40 | 114 | 8.01e-12 | 60.8 |
| Msa1466740 | AT1G80030.4 | 42.424 | 66 | 33 | 2 | 17 | 82 | 76 | 136 | 9.12e-12 | 60.5 |
| Msa1466740 | AT1G28210.2 | 38.272 | 81 | 44 | 2 | 6 | 86 | 40 | 114 | 9.19e-12 | 60.5 |
| Msa1466740 | AT1G59980.1 | 38.372 | 86 | 47 | 2 | 18 | 101 | 25 | 106 | 9.22e-12 | 60.5 |
| Msa1466740 | AT1G80030.2 | 42.424 | 66 | 33 | 2 | 17 | 82 | 76 | 136 | 9.43e-12 | 60.5 |
| Msa1466740 | AT1G80030.3 | 42.424 | 66 | 33 | 2 | 17 | 82 | 76 | 136 | 9.43e-12 | 60.5 |
| Msa1466740 | AT1G80030.1 | 42.424 | 66 | 33 | 2 | 17 | 82 | 76 | 136 | 9.43e-12 | 60.5 |
| Msa1466740 | AT2G21510.5 | 41.429 | 70 | 37 | 1 | 13 | 82 | 3 | 68 | 1.73e-11 | 59.7 |
| Msa1466740 | AT1G61770.1 | 39.726 | 73 | 39 | 2 | 18 | 90 | 36 | 103 | 3.54e-11 | 58.5 |
Find 43 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATATCTTGTCATACTTT+TGG | 0.194600 | tig0048664:-238 | Msa1466740:intergenic |
| TCTTGCTATTACTCTGTTCT+TGG | 0.198681 | tig0048664:+486 | Msa1466740:CDS |
| GGATTTCGAGCGAATTTATC+AGG | 0.209743 | tig0048664:-658 | Msa1466740:intergenic |
| CAAATTCAAGAAGCATATTC+AGG | 0.256213 | tig0048664:+715 | Msa1466740:CDS |
| TTGGCTTCTCCGGCAGTTGT+AGG | 0.330200 | tig0048664:-679 | Msa1466740:intergenic |
| ATAGCAAAAGAAAATGAATT+GGG | 0.392179 | tig0048664:-368 | Msa1466740:intergenic |
| CATAGCAAAAGAAAATGAAT+TGG | 0.393018 | tig0048664:-369 | Msa1466740:intergenic |
| GAGGTAAAACTGTGTCGTTT+TGG | 0.393844 | tig0048664:+975 | Msa1466740:three_prime_UTR |
| AAAGAAAATGAATTGGGGTA+TGG | 0.404353 | tig0048664:-362 | Msa1466740:intergenic |
| TTCGTTTCAGTTGCAGAGCA+TGG | 0.405625 | tig0048664:+921 | Msa1466740:CDS |
| AATTTGCTGAAACCGTCGTT+TGG | 0.414220 | tig0048664:-698 | Msa1466740:intergenic |
| GGAAAGATATAAACAAATTG+TGG | 0.425953 | tig0048664:-340 | Msa1466740:intergenic |
| TCGTTTCAGTTGCAGAGCAT+GGG | 0.437070 | tig0048664:+922 | Msa1466740:CDS |
| AAAATTGTGGAGCGGTGAAG+AGG | 0.470689 | tig0048664:-269 | Msa1466740:intergenic |
| AAGAAAATGAATTGGGGTAT+GGG | 0.476518 | tig0048664:-361 | Msa1466740:intergenic |
| AAACCGTCGTTTGGCTTCTC+CGG | 0.481969 | tig0048664:-689 | Msa1466740:intergenic |
| CCTTCTTGATCCATCACCGT+TGG | 0.486869 | tig0048664:-435 | Msa1466740:intergenic |
| AAAAGATCAATGTACGATGC+TGG | 0.500396 | tig0048664:+848 | Msa1466740:CDS |
| GAAAGATATAAACAAATTGT+GGG | 0.501240 | tig0048664:-339 | Msa1466740:intergenic |
| AAGAAGAAATGTTACGAACT+TGG | 0.502731 | tig0048664:-917 | Msa1466740:intergenic |
| TGCTTACCGCAAACTCGCTA+TGG | 0.507423 | tig0048664:+545 | Msa1466740:CDS |
| CGTTTACCATAGCGAGTTTG+CGG | 0.522874 | tig0048664:-551 | Msa1466740:intergenic |
| GGAGGAGGATCCAACGGTGA+TGG | 0.526876 | tig0048664:+425 | Msa1466740:exon |
| TGAAAGCTTTGTTCATTAGG+AGG | 0.534084 | tig0048664:+407 | Msa1466740:five_prime_UTR |
| AAGCTTTGTTCATTAGGAGG+AGG | 0.550512 | tig0048664:+410 | Msa1466740:five_prime_UTR |
| AGTGCGAATATCAGAGGAGG+AGG | 0.553290 | tig0048664:-523 | Msa1466740:intergenic |
| ACTTGGTCTTCTTCTTCAAG+AGG | 0.556126 | tig0048664:-900 | Msa1466740:intergenic |
| CGTTTCAGTTGCAGAGCATG+GGG | 0.559039 | tig0048664:+923 | Msa1466740:CDS |
| GCTCGAAATCCTACAACTGC+CGG | 0.560164 | tig0048664:+670 | Msa1466740:CDS |
| AGAGAGAGAAAATTGTGGAG+CGG | 0.590996 | tig0048664:-277 | Msa1466740:intergenic |
| AGAAGATCTACTACCACCGT+TGG | 0.599024 | tig0048664:-466 | Msa1466740:intergenic |
| GATTTCGAGCGAATTTATCA+GGG | 0.606606 | tig0048664:-657 | Msa1466740:intergenic |
| CAAGAAGGAGGAGGATCCAA+CGG | 0.620400 | tig0048664:+450 | Msa1466740:CDS |
| TCATTAGGAGGAGGATCCAA+CGG | 0.632193 | tig0048664:+419 | Msa1466740:five_prime_UTR |
| GTAAGCAGTGCGAATATCAG+AGG | 0.644250 | tig0048664:-529 | Msa1466740:intergenic |
| CCAACGGTGATGGATCAAGA+AGG | 0.647408 | tig0048664:+435 | Msa1466740:exon |
| TAGCAAAAGAAAATGAATTG+GGG | 0.650720 | tig0048664:-367 | Msa1466740:intergenic |
| AGATATAAACAAATTGTGGG+AGG | 0.651513 | tig0048664:-336 | Msa1466740:intergenic |
| AGCAGTGCGAATATCAGAGG+AGG | 0.654808 | tig0048664:-526 | Msa1466740:intergenic |
| GTGATGGATCAAGAAGGAGG+AGG | 0.667540 | tig0048664:+441 | Msa1466740:exon |
| ACGGTGATGGATCAAGAAGG+AGG | 0.684880 | tig0048664:+438 | Msa1466740:exon |
| CTGCCGGAGAAGCCAAACGA+CGG | 0.702205 | tig0048664:+686 | Msa1466740:CDS |
| GAAGGAGGAGGATCCAACGG+TGG | 0.737111 | tig0048664:+453 | Msa1466740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATATCTTGTCATACTTTT+GGG | - | tig0048664:240-259 | None:intergenic | 20.0% |
| !!! | AAAATATCTTGTCATACTTT+TGG | - | tig0048664:241-260 | None:intergenic | 20.0% |
| !! | GAAAGATATAAACAAATTGT+GGG | - | tig0048664:342-361 | None:intergenic | 20.0% |
| !! | ATAGCAAAAGAAAATGAATT+GGG | - | tig0048664:371-390 | None:intergenic | 20.0% |
| !! | AATATAAATGAGTAAAACGA+CGG | - | tig0048664:577-596 | Msa1466740:intergenic | 20.0% |
| !! | TTCTATAGATAGTAATGAAT+TGG | + | tig0048664:757-776 | Msa1466740:intron | 20.0% |
| !! | ATATGAGATTGATTATTGAT+TGG | + | tig0048664:785-804 | Msa1466740:intron | 20.0% |
| !!! | AAATATCTTGTCATACTTTT+GGG | - | tig0048664:240-259 | Msa1466740:intergenic | 20.0% |
| !!! | AAAATATCTTGTCATACTTT+TGG | - | tig0048664:241-260 | Msa1466740:intergenic | 20.0% |
| !! | GAAAGATATAAACAAATTGT+GGG | - | tig0048664:342-361 | Msa1466740:intergenic | 20.0% |
| !! | ATAGCAAAAGAAAATGAATT+GGG | - | tig0048664:371-390 | Msa1466740:intergenic | 20.0% |
| !! | AATATAAATGAGTAAAACGA+CGG | - | tig0048664:577-596 | Msa1466740:intergenic | 20.0% |
| !! | TTCTATAGATAGTAATGAAT+TGG | + | tig0048664:757-776 | Msa1466740:intron | 20.0% |
| !! | ATATGAGATTGATTATTGAT+TGG | + | tig0048664:785-804 | Msa1466740:intron | 20.0% |
| ! | GGAAAGATATAAACAAATTG+TGG | - | tig0048664:343-362 | None:intergenic | 25.0% |
| ! | TAGCAAAAGAAAATGAATTG+GGG | - | tig0048664:370-389 | None:intergenic | 25.0% |
| ! | CATAGCAAAAGAAAATGAAT+TGG | - | tig0048664:372-391 | None:intergenic | 25.0% |
| !! | CAATTCATTTTCTTTTGCTA+TGG | + | tig0048664:370-389 | Msa1466740:five_prime_UTR | 25.0% |
| !!! | TTTTGAAAGCTTTGTTCATT+AGG | + | tig0048664:404-423 | Msa1466740:five_prime_UTR | 25.0% |
| ! | TTGTTGAATTTGAAAAGAGA+TGG | + | tig0048664:632-651 | Msa1466740:intron | 25.0% |
| !!! | TTGATTGGTTTTAATGTTGT+TGG | + | tig0048664:800-819 | Msa1466740:intron | 25.0% |
| ! | GGAAAGATATAAACAAATTG+TGG | - | tig0048664:343-362 | Msa1466740:intergenic | 25.0% |
| ! | TAGCAAAAGAAAATGAATTG+GGG | - | tig0048664:370-389 | Msa1466740:intergenic | 25.0% |
| ! | CATAGCAAAAGAAAATGAAT+TGG | - | tig0048664:372-391 | Msa1466740:intergenic | 25.0% |
| !! | CAATTCATTTTCTTTTGCTA+TGG | + | tig0048664:370-389 | Msa1466740:five_prime_UTR | 25.0% |
| !!! | TTTTGAAAGCTTTGTTCATT+AGG | + | tig0048664:404-423 | Msa1466740:five_prime_UTR | 25.0% |
| ! | TTGTTGAATTTGAAAAGAGA+TGG | + | tig0048664:632-651 | Msa1466740:intron | 25.0% |
| !!! | TTGATTGGTTTTAATGTTGT+TGG | + | tig0048664:800-819 | Msa1466740:intron | 25.0% |
| AGATATAAACAAATTGTGGG+AGG | - | tig0048664:339-358 | None:intergenic | 30.0% | |
| AAGAAAATGAATTGGGGTAT+GGG | - | tig0048664:364-383 | None:intergenic | 30.0% | |
| AAAGAAAATGAATTGGGGTA+TGG | - | tig0048664:365-384 | None:intergenic | 30.0% | |
| ! | CAAATTCAAGAAGCATATTC+AGG | + | tig0048664:715-734 | Msa1466740:CDS | 30.0% |
| AAGAAGAAATGTTACGAACT+TGG | - | tig0048664:901-920 | Msa1466740:intergenic | 30.0% | |
| !!! | GTTTTACCTCGTTTTGTTTA+CGG | - | tig0048664:965-984 | Msa1466740:intergenic | 30.0% |
| AGATATAAACAAATTGTGGG+AGG | - | tig0048664:339-358 | Msa1466740:intergenic | 30.0% | |
| AAGAAAATGAATTGGGGTAT+GGG | - | tig0048664:364-383 | Msa1466740:intergenic | 30.0% | |
| AAAGAAAATGAATTGGGGTA+TGG | - | tig0048664:365-384 | Msa1466740:intergenic | 30.0% | |
| ! | CAAATTCAAGAAGCATATTC+AGG | + | tig0048664:715-734 | Msa1466740:CDS | 30.0% |
| AAGAAGAAATGTTACGAACT+TGG | - | tig0048664:901-920 | Msa1466740:intergenic | 30.0% | |
| !!! | GTTTTACCTCGTTTTGTTTA+CGG | - | tig0048664:965-984 | Msa1466740:intergenic | 30.0% |
| TAGAGAGAGAGAGAAAATTG+TGG | - | tig0048664:285-304 | None:intergenic | 35.0% | |
| !! | TGAAAGCTTTGTTCATTAGG+AGG | + | tig0048664:407-426 | Msa1466740:five_prime_UTR | 35.0% |
| !! | TCTTGCTATTACTCTGTTCT+TGG | + | tig0048664:486-505 | Msa1466740:CDS | 35.0% |
| GATTTCGAGCGAATTTATCA+GGG | - | tig0048664:660-679 | Msa1466740:intergenic | 35.0% | |
| AAAAGATCAATGTACGATGC+TGG | + | tig0048664:848-867 | Msa1466740:CDS | 35.0% | |
| ! | ATTTTGCCGTAAACAAAACG+AGG | + | tig0048664:956-975 | Msa1466740:three_prime_UTR | 35.0% |
| TAGAGAGAGAGAGAAAATTG+TGG | - | tig0048664:285-304 | Msa1466740:intergenic | 35.0% | |
| !! | TGAAAGCTTTGTTCATTAGG+AGG | + | tig0048664:407-426 | Msa1466740:five_prime_UTR | 35.0% |
| !! | TCTTGCTATTACTCTGTTCT+TGG | + | tig0048664:486-505 | Msa1466740:CDS | 35.0% |
| GATTTCGAGCGAATTTATCA+GGG | - | tig0048664:660-679 | Msa1466740:intergenic | 35.0% | |
| AAAAGATCAATGTACGATGC+TGG | + | tig0048664:848-867 | Msa1466740:CDS | 35.0% | |
| ! | ATTTTGCCGTAAACAAAACG+AGG | + | tig0048664:956-975 | Msa1466740:three_prime_UTR | 35.0% |
| AGAGAGAGAAAATTGTGGAG+CGG | - | tig0048664:280-299 | None:intergenic | 40.0% | |
| !! | AAGCTTTGTTCATTAGGAGG+AGG | + | tig0048664:410-429 | Msa1466740:five_prime_UTR | 40.0% |
| GGATTTCGAGCGAATTTATC+AGG | - | tig0048664:661-680 | Msa1466740:intergenic | 40.0% | |
| !! | AATTTGCTGAAACCGTCGTT+TGG | - | tig0048664:701-720 | Msa1466740:intergenic | 40.0% |
| ! | ACTTGGTCTTCTTCTTCAAG+AGG | - | tig0048664:884-903 | Msa1466740:intergenic | 40.0% |
| !!! | GAGGTAAAACTGTGTCGTTT+TGG | + | tig0048664:975-994 | Msa1466740:three_prime_UTR | 40.0% |
| AGAGAGAGAAAATTGTGGAG+CGG | - | tig0048664:280-299 | Msa1466740:intergenic | 40.0% | |
| !! | AAGCTTTGTTCATTAGGAGG+AGG | + | tig0048664:410-429 | Msa1466740:five_prime_UTR | 40.0% |
| GGATTTCGAGCGAATTTATC+AGG | - | tig0048664:661-680 | Msa1466740:intergenic | 40.0% | |
| !! | AATTTGCTGAAACCGTCGTT+TGG | - | tig0048664:701-720 | Msa1466740:intergenic | 40.0% |
| ! | ACTTGGTCTTCTTCTTCAAG+AGG | - | tig0048664:884-903 | Msa1466740:intergenic | 40.0% |
| !!! | GAGGTAAAACTGTGTCGTTT+TGG | + | tig0048664:975-994 | Msa1466740:three_prime_UTR | 40.0% |
| AAAATTGTGGAGCGGTGAAG+AGG | - | tig0048664:272-291 | None:intergenic | 45.0% | |
| TCATTAGGAGGAGGATCCAA+CGG | + | tig0048664:419-438 | Msa1466740:five_prime_UTR | 45.0% | |
| AGAAGATCTACTACCACCGT+TGG | - | tig0048664:469-488 | Msa1466740:intergenic | 45.0% | |
| GTAAGCAGTGCGAATATCAG+AGG | - | tig0048664:532-551 | Msa1466740:intergenic | 45.0% | |
| CGTTTACCATAGCGAGTTTG+CGG | - | tig0048664:554-573 | Msa1466740:intergenic | 45.0% | |
| TTCGTTTCAGTTGCAGAGCA+TGG | + | tig0048664:921-940 | Msa1466740:CDS | 45.0% | |
| TCGTTTCAGTTGCAGAGCAT+GGG | + | tig0048664:922-941 | Msa1466740:CDS | 45.0% | |
| AAAATTGTGGAGCGGTGAAG+AGG | - | tig0048664:272-291 | Msa1466740:intergenic | 45.0% | |
| TCATTAGGAGGAGGATCCAA+CGG | + | tig0048664:419-438 | Msa1466740:five_prime_UTR | 45.0% | |
| AGAAGATCTACTACCACCGT+TGG | - | tig0048664:469-488 | Msa1466740:intergenic | 45.0% | |
| GTAAGCAGTGCGAATATCAG+AGG | - | tig0048664:532-551 | Msa1466740:intergenic | 45.0% | |
| CGTTTACCATAGCGAGTTTG+CGG | - | tig0048664:554-573 | Msa1466740:intergenic | 45.0% | |
| TTCGTTTCAGTTGCAGAGCA+TGG | + | tig0048664:921-940 | Msa1466740:CDS | 45.0% | |
| TCGTTTCAGTTGCAGAGCAT+GGG | + | tig0048664:922-941 | Msa1466740:CDS | 45.0% | |
| CCTTCTTGATCCATCACCGT+TGG | - | tig0048664:438-457 | Msa1466740:intergenic | 50.0% | |
| !! | CCAACGGTGATGGATCAAGA+AGG | + | tig0048664:435-454 | Msa1466740:exon | 50.0% |
| !! | ACGGTGATGGATCAAGAAGG+AGG | + | tig0048664:438-457 | Msa1466740:exon | 50.0% |
| !! | GTGATGGATCAAGAAGGAGG+AGG | + | tig0048664:441-460 | Msa1466740:exon | 50.0% |
| CAAGAAGGAGGAGGATCCAA+CGG | + | tig0048664:450-469 | Msa1466740:CDS | 50.0% | |
| AGTGCGAATATCAGAGGAGG+AGG | - | tig0048664:526-545 | Msa1466740:intergenic | 50.0% | |
| AGCAGTGCGAATATCAGAGG+AGG | - | tig0048664:529-548 | Msa1466740:intergenic | 50.0% | |
| TGCTTACCGCAAACTCGCTA+TGG | + | tig0048664:545-564 | Msa1466740:CDS | 50.0% | |
| GCTCGAAATCCTACAACTGC+CGG | + | tig0048664:670-689 | Msa1466740:CDS | 50.0% | |
| ! | AAACCGTCGTTTGGCTTCTC+CGG | - | tig0048664:692-711 | Msa1466740:intergenic | 50.0% |
| CGTTTCAGTTGCAGAGCATG+GGG | + | tig0048664:923-942 | Msa1466740:CDS | 50.0% | |
| CCTTCTTGATCCATCACCGT+TGG | - | tig0048664:438-457 | Msa1466740:intergenic | 50.0% | |
| !! | CCAACGGTGATGGATCAAGA+AGG | + | tig0048664:435-454 | Msa1466740:exon | 50.0% |
| !! | ACGGTGATGGATCAAGAAGG+AGG | + | tig0048664:438-457 | Msa1466740:exon | 50.0% |
| !! | GTGATGGATCAAGAAGGAGG+AGG | + | tig0048664:441-460 | Msa1466740:exon | 50.0% |
| CAAGAAGGAGGAGGATCCAA+CGG | + | tig0048664:450-469 | Msa1466740:CDS | 50.0% | |
| AGTGCGAATATCAGAGGAGG+AGG | - | tig0048664:526-545 | Msa1466740:intergenic | 50.0% | |
| AGCAGTGCGAATATCAGAGG+AGG | - | tig0048664:529-548 | Msa1466740:intergenic | 50.0% | |
| TGCTTACCGCAAACTCGCTA+TGG | + | tig0048664:545-564 | Msa1466740:CDS | 50.0% | |
| GCTCGAAATCCTACAACTGC+CGG | + | tig0048664:670-689 | Msa1466740:CDS | 50.0% | |
| ! | AAACCGTCGTTTGGCTTCTC+CGG | - | tig0048664:692-711 | Msa1466740:intergenic | 50.0% |
| CGTTTCAGTTGCAGAGCATG+GGG | + | tig0048664:923-942 | Msa1466740:CDS | 50.0% | |
| TTGGCTTCTCCGGCAGTTGT+AGG | - | tig0048664:682-701 | Msa1466740:intergenic | 55.0% | |
| TTGGCTTCTCCGGCAGTTGT+AGG | - | tig0048664:682-701 | Msa1466740:intergenic | 55.0% | |
| GGAGGAGGATCCAACGGTGA+TGG | + | tig0048664:425-444 | Msa1466740:exon | 60.0% | |
| GAAGGAGGAGGATCCAACGG+TGG | + | tig0048664:453-472 | Msa1466740:CDS | 60.0% | |
| CTGCCGGAGAAGCCAAACGA+CGG | + | tig0048664:686-705 | Msa1466740:CDS | 60.0% | |
| GGAGGAGGATCCAACGGTGA+TGG | + | tig0048664:425-444 | Msa1466740:exon | 60.0% | |
| GAAGGAGGAGGATCCAACGG+TGG | + | tig0048664:453-472 | Msa1466740:CDS | 60.0% | |
| CTGCCGGAGAAGCCAAACGA+CGG | + | tig0048664:686-705 | Msa1466740:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0048664 | gene | 237 | 1000 | 237 | ID=Msa1466740;Name=Msa1466740 |
| tig0048664 | mRNA | 237 | 1000 | 237 | ID=Msa1466740-mRNA-1;Parent=Msa1466740;Name=Msa1466740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=207|1|1|1|1|1|3|45|111 |
| tig0048664 | exon | 237 | 566 | 237 | ID=Msa1466740-mRNA-1:exon:25131;Parent=Msa1466740-mRNA-1 |
| tig0048664 | exon | 649 | 736 | 649 | ID=Msa1466740-mRNA-1:exon:25132;Parent=Msa1466740-mRNA-1 |
| tig0048664 | exon | 831 | 1000 | 831 | ID=Msa1466740-mRNA-1:exon:25133;Parent=Msa1466740-mRNA-1 |
| tig0048664 | five_prime_UTR | 237 | 443 | 237 | ID=Msa1466740-mRNA-1:five_prime_utr;Parent=Msa1466740-mRNA-1 |
| tig0048664 | CDS | 444 | 566 | 444 | ID=Msa1466740-mRNA-1:cds;Parent=Msa1466740-mRNA-1 |
| tig0048664 | CDS | 649 | 736 | 649 | ID=Msa1466740-mRNA-1:cds;Parent=Msa1466740-mRNA-1 |
| tig0048664 | CDS | 831 | 955 | 831 | ID=Msa1466740-mRNA-1:cds;Parent=Msa1466740-mRNA-1 |
| tig0048664 | three_prime_UTR | 956 | 1000 | 956 | ID=Msa1466740-mRNA-1:three_prime_utr;Parent=Msa1466740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
